data_3O6E # _entry.id 3O6E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3O6E pdb_00003o6e 10.2210/pdb3o6e/pdb NDB NA0648 ? ? RCSB RCSB060722 ? ? WWPDB D_1000060722 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O3I ;Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OH at its 3'-end ; unspecified PDB 3O7V ;Crystal Structure of human Hiwi1 (V361M) PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end ; unspecified PDB 3O7X 'Crystal structure of human Hili PAZ domain (residues 277-399)' unspecified # _pdbx_database_status.entry_id 3O6E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tian, Y.' 1 'Simanshu, D.K.' 2 'Ma, J.-B.' 3 'Patel, D.J.' 4 # _citation.id primary _citation.title ;Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 903 _citation.page_last 910 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21193640 _citation.pdbx_database_id_DOI 10.1073/pnas.1017762108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tian, Y.' 1 ? primary 'Simanshu, D.K.' 2 ? primary 'Ma, J.B.' 3 ? primary 'Patel, D.J.' 4 ? # _cell.length_a 44.013 _cell.length_b 44.013 _cell.length_c 147.024 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3O6E _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 3O6E _symmetry.Int_Tables_number 91 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Piwi-like protein 1' 14625.195 1 ? ? 'PAZ domain (UNP Residues 277-399)' ? 2 polymer syn ;RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3') ; 4438.678 1 ? ? ? ? 3 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SETVLDF(MSE)FNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYN QEITDLKQPVLVSQPKRRRGPGGTLPGPA(MSE)LIPELCYLTGLTDKMRND ; ;SETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT DLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND ; X ? 2 polyribonucleotide no yes 'GCGAAUAUUCGCU(OMU)' GCGAAUAUUCGCUU A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 THR n 1 4 VAL n 1 5 LEU n 1 6 ASP n 1 7 PHE n 1 8 MSE n 1 9 PHE n 1 10 ASN n 1 11 PHE n 1 12 TYR n 1 13 HIS n 1 14 GLN n 1 15 THR n 1 16 GLU n 1 17 GLU n 1 18 HIS n 1 19 LYS n 1 20 PHE n 1 21 GLN n 1 22 GLU n 1 23 GLN n 1 24 VAL n 1 25 SER n 1 26 LYS n 1 27 GLU n 1 28 LEU n 1 29 ILE n 1 30 GLY n 1 31 LEU n 1 32 VAL n 1 33 VAL n 1 34 LEU n 1 35 THR n 1 36 LYS n 1 37 TYR n 1 38 ASN n 1 39 ASN n 1 40 LYS n 1 41 THR n 1 42 TYR n 1 43 ARG n 1 44 VAL n 1 45 ASP n 1 46 ASP n 1 47 ILE n 1 48 ASP n 1 49 TRP n 1 50 ASP n 1 51 GLN n 1 52 ASN n 1 53 PRO n 1 54 LYS n 1 55 SER n 1 56 THR n 1 57 PHE n 1 58 LYS n 1 59 LYS n 1 60 ALA n 1 61 ASP n 1 62 GLY n 1 63 SER n 1 64 GLU n 1 65 VAL n 1 66 SER n 1 67 PHE n 1 68 LEU n 1 69 GLU n 1 70 TYR n 1 71 TYR n 1 72 ARG n 1 73 LYS n 1 74 GLN n 1 75 TYR n 1 76 ASN n 1 77 GLN n 1 78 GLU n 1 79 ILE n 1 80 THR n 1 81 ASP n 1 82 LEU n 1 83 LYS n 1 84 GLN n 1 85 PRO n 1 86 VAL n 1 87 LEU n 1 88 VAL n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 LYS n 1 93 ARG n 1 94 ARG n 1 95 ARG n 1 96 GLY n 1 97 PRO n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LEU n 1 102 PRO n 1 103 GLY n 1 104 PRO n 1 105 ALA n 1 106 MSE n 1 107 LEU n 1 108 ILE n 1 109 PRO n 1 110 GLU n 1 111 LEU n 1 112 CYS n 1 113 TYR n 1 114 LEU n 1 115 THR n 1 116 GLY n 1 117 LEU n 1 118 THR n 1 119 ASP n 1 120 LYS n 1 121 MET n 1 122 ARG n 1 123 ASN n 1 124 ASP n 2 1 G n 2 2 C n 2 3 G n 2 4 A n 2 5 A n 2 6 U n 2 7 A n 2 8 U n 2 9 U n 2 10 C n 2 11 G n 2 12 C n 2 13 U n 2 14 OMU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HIWI, Piwi-like protein 1, PIWIL1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PIWL1_HUMAN Q96J94 1 ;ETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITD LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND ; 277 ? 2 PDB 3O6E 3O6E 2 GCGAAUAUUCGCUU 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O6E X 2 ? 124 ? Q96J94 277 ? 399 ? 277 399 2 2 3O6E A 1 ? 14 ? 3O6E 1 ? 14 ? 1 14 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3O6E _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q96J94 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 276 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3O6E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1-5% PEG3350, 50 mM NaCl, 50 mM Na-acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-09-15 _diffrn_detector.details 'vertical focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Rosenbaum-Rock double crystal sagittal focusing monochromator' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3O6E _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 30.000 _reflns.number_obs 3451 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_netI_over_sigmaI 32.5 _reflns.pdbx_chi_squared 1.290 _reflns.pdbx_redundancy 10.400 _reflns.percent_possible_obs 95.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.900 3.000 ? ? ? 0.209 4.8 ? 0.521 6.200 ? 245 72.300 ? 1 3.000 3.120 ? ? ? 0.188 ? ? 0.625 7.200 ? 315 90.000 ? 2 3.120 3.270 ? ? ? 0.146 ? ? 0.714 9.500 ? 320 92.800 ? 3 3.270 3.440 ? ? ? 0.133 ? ? 0.807 10.500 ? 336 96.300 ? 4 3.440 3.650 ? ? ? 0.122 ? ? 0.974 11.400 ? 363 100.000 ? 5 3.650 3.930 ? ? ? 0.098 ? ? 1.164 12.200 ? 346 100.000 ? 6 3.930 4.330 ? ? ? 0.083 ? ? 1.397 12.200 ? 353 100.000 ? 7 4.330 4.950 ? ? ? 0.075 ? ? 1.697 11.900 ? 370 100.000 ? 8 4.950 6.230 ? ? ? 0.079 ? ? 1.738 11.400 ? 380 100.000 ? 9 6.230 30.000 ? ? ? 0.057 ? ? 2.136 10.100 ? 423 99.500 ? 10 # _refine.entry_id 3O6E _refine.ls_d_res_high 2.9040 _refine.ls_d_res_low 15.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.2700 _refine.ls_number_reflns_obs 3384 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2562 _refine.ls_R_factor_R_work 0.2515 _refine.ls_wR_factor_R_work 0.2279 _refine.ls_R_factor_R_free 0.3051 _refine.ls_wR_factor_R_free 0.2717 _refine.ls_percent_reflns_R_free 9.0000 _refine.ls_number_reflns_R_free 305 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 61.5548 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.5500 _refine.aniso_B[2][2] 2.5500 _refine.aniso_B[3][3] -5.1000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9110 _refine.correlation_coeff_Fo_to_Fc_free 0.8660 _refine.overall_SU_R_Cruickshank_DPI 0.4752 _refine.overall_SU_R_free 0.5689 _refine.pdbx_overall_ESU_R_Free 0.5690 _refine.overall_SU_ML 0.4180 _refine.overall_SU_B 51.5530 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3O7V' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7753 _refine.B_iso_max 101.650 _refine.B_iso_min 33.310 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 855 _refine_hist.pdbx_number_atoms_nucleic_acid 293 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 1154 _refine_hist.d_res_high 2.9040 _refine_hist.d_res_low 15.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1200 0.005 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1691 0.842 2.271 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 105 4.211 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41 35.208 25.366 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 147 13.429 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 2.725 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 202 0.050 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 800 0.003 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 534 0.131 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 863 0.258 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 666 0.338 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 828 0.522 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.9040 _refine_ls_shell.d_res_low 2.9770 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 67.7600 _refine_ls_shell.number_reflns_R_work 154 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3320 _refine_ls_shell.R_factor_R_free 0.3690 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 166 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3O6E _struct.title ;Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O6E _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Piwi, PAZ, RNA silencing, pi-RNA, Hiwi1, Hili, PAZ domain, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? PHE A 9 ? THR X 278 PHE X 284 1 ? 7 HELX_P HELX_P2 2 GLU A 16 ? ILE A 29 ? GLU X 291 ILE X 304 1 ? 14 HELX_P HELX_P3 3 PHE A 67 ? GLN A 74 ? PHE X 342 GLN X 349 1 ? 8 HELX_P HELX_P4 4 ILE A 108 ? GLU A 110 ? ILE X 383 GLU X 385 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 7 C ? ? ? 1_555 A MSE 8 N ? ? X PHE 282 X MSE 283 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A PHE 9 N ? ? X MSE 283 X PHE 284 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A ALA 105 C ? ? ? 1_555 A MSE 106 N ? ? X ALA 380 X MSE 381 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 106 C ? ? ? 1_555 A LEU 107 N ? ? X MSE 381 X LEU 382 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? B U 13 "O3'" ? ? ? 1_555 B OMU 14 P ? ? A U 13 A OMU 14 1_555 ? ? ? ? ? ? ? 1.602 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 4 A U 9 7_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog11 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 5 A U 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 5 A U 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 6 A A 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 6 A A 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 7 A U 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 7 A U 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 8 A A 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 8 A A 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 9 A A 4 7_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog20 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 41 ? ARG A 43 ? THR X 316 ARG X 318 A 2 VAL A 32 ? THR A 35 ? VAL X 307 THR X 310 A 3 CYS A 112 ? LEU A 114 ? CYS X 387 LEU X 389 B 1 ASP A 46 ? ASP A 48 ? ASP X 321 ASP X 323 B 2 VAL A 86 ? SER A 89 ? VAL X 361 SER X 364 B 3 ALA A 105 ? LEU A 107 ? ALA X 380 LEU X 382 C 1 THR A 56 ? LYS A 58 ? THR X 331 LYS X 333 C 2 GLU A 64 ? SER A 66 ? GLU X 339 SER X 341 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 42 ? O TYR X 317 N VAL A 33 ? N VAL X 308 A 2 3 N LEU A 34 ? N LEU X 309 O TYR A 113 ? O TYR X 388 B 1 2 N ASP A 46 ? N ASP X 321 O VAL A 88 ? O VAL X 363 B 2 3 N LEU A 87 ? N LEU X 362 O LEU A 107 ? O LEU X 382 C 1 2 N PHE A 57 ? N PHE X 332 O VAL A 65 ? O VAL X 340 # _atom_sites.entry_id 3O6E _atom_sites.fract_transf_matrix[1][1] 0.022721 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022721 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006802 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 276 ? ? ? X . n A 1 2 GLU 2 277 277 GLU GLU X . n A 1 3 THR 3 278 278 THR THR X . n A 1 4 VAL 4 279 279 VAL VAL X . n A 1 5 LEU 5 280 280 LEU LEU X . n A 1 6 ASP 6 281 281 ASP ASP X . n A 1 7 PHE 7 282 282 PHE PHE X . n A 1 8 MSE 8 283 283 MSE MSE X . n A 1 9 PHE 9 284 284 PHE PHE X . n A 1 10 ASN 10 285 285 ASN ASN X . n A 1 11 PHE 11 286 286 PHE PHE X . n A 1 12 TYR 12 287 287 TYR TYR X . n A 1 13 HIS 13 288 288 HIS HIS X . n A 1 14 GLN 14 289 289 GLN GLN X . n A 1 15 THR 15 290 290 THR THR X . n A 1 16 GLU 16 291 291 GLU GLU X . n A 1 17 GLU 17 292 292 GLU GLU X . n A 1 18 HIS 18 293 293 HIS HIS X . n A 1 19 LYS 19 294 294 LYS LYS X . n A 1 20 PHE 20 295 295 PHE PHE X . n A 1 21 GLN 21 296 296 GLN GLN X . n A 1 22 GLU 22 297 297 GLU GLU X . n A 1 23 GLN 23 298 298 GLN GLN X . n A 1 24 VAL 24 299 299 VAL VAL X . n A 1 25 SER 25 300 300 SER SER X . n A 1 26 LYS 26 301 301 LYS LYS X . n A 1 27 GLU 27 302 302 GLU GLU X . n A 1 28 LEU 28 303 303 LEU LEU X . n A 1 29 ILE 29 304 304 ILE ILE X . n A 1 30 GLY 30 305 305 GLY GLY X . n A 1 31 LEU 31 306 306 LEU LEU X . n A 1 32 VAL 32 307 307 VAL VAL X . n A 1 33 VAL 33 308 308 VAL VAL X . n A 1 34 LEU 34 309 309 LEU LEU X . n A 1 35 THR 35 310 310 THR THR X . n A 1 36 LYS 36 311 311 LYS LYS X . n A 1 37 TYR 37 312 312 TYR TYR X . n A 1 38 ASN 38 313 313 ASN ASN X . n A 1 39 ASN 39 314 314 ASN ASN X . n A 1 40 LYS 40 315 315 LYS LYS X . n A 1 41 THR 41 316 316 THR THR X . n A 1 42 TYR 42 317 317 TYR TYR X . n A 1 43 ARG 43 318 318 ARG ARG X . n A 1 44 VAL 44 319 319 VAL VAL X . n A 1 45 ASP 45 320 320 ASP ASP X . n A 1 46 ASP 46 321 321 ASP ASP X . n A 1 47 ILE 47 322 322 ILE ILE X . n A 1 48 ASP 48 323 323 ASP ASP X . n A 1 49 TRP 49 324 324 TRP TRP X . n A 1 50 ASP 50 325 325 ASP ASP X . n A 1 51 GLN 51 326 326 GLN GLN X . n A 1 52 ASN 52 327 327 ASN ASN X . n A 1 53 PRO 53 328 328 PRO PRO X . n A 1 54 LYS 54 329 329 LYS LYS X . n A 1 55 SER 55 330 330 SER SER X . n A 1 56 THR 56 331 331 THR THR X . n A 1 57 PHE 57 332 332 PHE PHE X . n A 1 58 LYS 58 333 333 LYS LYS X . n A 1 59 LYS 59 334 334 LYS LYS X . n A 1 60 ALA 60 335 335 ALA ALA X . n A 1 61 ASP 61 336 336 ASP ASP X . n A 1 62 GLY 62 337 337 GLY GLY X . n A 1 63 SER 63 338 338 SER SER X . n A 1 64 GLU 64 339 339 GLU GLU X . n A 1 65 VAL 65 340 340 VAL VAL X . n A 1 66 SER 66 341 341 SER SER X . n A 1 67 PHE 67 342 342 PHE PHE X . n A 1 68 LEU 68 343 343 LEU LEU X . n A 1 69 GLU 69 344 344 GLU GLU X . n A 1 70 TYR 70 345 345 TYR TYR X . n A 1 71 TYR 71 346 346 TYR TYR X . n A 1 72 ARG 72 347 347 ARG ARG X . n A 1 73 LYS 73 348 348 LYS LYS X . n A 1 74 GLN 74 349 349 GLN GLN X . n A 1 75 TYR 75 350 350 TYR TYR X . n A 1 76 ASN 76 351 351 ASN ASN X . n A 1 77 GLN 77 352 352 GLN GLN X . n A 1 78 GLU 78 353 353 GLU GLU X . n A 1 79 ILE 79 354 354 ILE ILE X . n A 1 80 THR 80 355 355 THR THR X . n A 1 81 ASP 81 356 356 ASP ASP X . n A 1 82 LEU 82 357 357 LEU LEU X . n A 1 83 LYS 83 358 358 LYS LYS X . n A 1 84 GLN 84 359 359 GLN GLN X . n A 1 85 PRO 85 360 360 PRO PRO X . n A 1 86 VAL 86 361 361 VAL VAL X . n A 1 87 LEU 87 362 362 LEU LEU X . n A 1 88 VAL 88 363 363 VAL VAL X . n A 1 89 SER 89 364 364 SER SER X . n A 1 90 GLN 90 365 365 GLN GLN X . n A 1 91 PRO 91 366 366 PRO PRO X . n A 1 92 LYS 92 367 367 LYS LYS X . n A 1 93 ARG 93 368 ? ? ? X . n A 1 94 ARG 94 369 ? ? ? X . n A 1 95 ARG 95 370 ? ? ? X . n A 1 96 GLY 96 371 ? ? ? X . n A 1 97 PRO 97 372 ? ? ? X . n A 1 98 GLY 98 373 ? ? ? X . n A 1 99 GLY 99 374 ? ? ? X . n A 1 100 THR 100 375 ? ? ? X . n A 1 101 LEU 101 376 ? ? ? X . n A 1 102 PRO 102 377 ? ? ? X . n A 1 103 GLY 103 378 378 GLY GLY X . n A 1 104 PRO 104 379 379 PRO PRO X . n A 1 105 ALA 105 380 380 ALA ALA X . n A 1 106 MSE 106 381 381 MSE MSE X . n A 1 107 LEU 107 382 382 LEU LEU X . n A 1 108 ILE 108 383 383 ILE ILE X . n A 1 109 PRO 109 384 384 PRO PRO X . n A 1 110 GLU 110 385 385 GLU GLU X . n A 1 111 LEU 111 386 386 LEU LEU X . n A 1 112 CYS 112 387 387 CYS CYS X . n A 1 113 TYR 113 388 388 TYR TYR X . n A 1 114 LEU 114 389 389 LEU LEU X . n A 1 115 THR 115 390 390 THR THR X . n A 1 116 GLY 116 391 391 GLY GLY X . n A 1 117 LEU 117 392 392 LEU LEU X . n A 1 118 THR 118 393 393 THR THR X . n A 1 119 ASP 119 394 ? ? ? X . n A 1 120 LYS 120 395 ? ? ? X . n A 1 121 MET 121 396 ? ? ? X . n A 1 122 ARG 122 397 ? ? ? X . n A 1 123 ASN 123 398 ? ? ? X . n A 1 124 ASP 124 399 ? ? ? X . n B 2 1 G 1 1 1 G G A . n B 2 2 C 2 2 2 C C A . n B 2 3 G 3 3 3 G G A . n B 2 4 A 4 4 4 A A A . n B 2 5 A 5 5 5 A A A . n B 2 6 U 6 6 6 U U A . n B 2 7 A 7 7 7 A A A . n B 2 8 U 8 8 8 U U A . n B 2 9 U 9 9 9 U U A . n B 2 10 C 10 10 10 C C A . n B 2 11 G 11 11 11 G G A . n B 2 12 C 12 12 12 C C A . n B 2 13 U 13 13 13 U U A . n B 2 14 OMU 14 14 14 OMU OMU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH X . C 3 HOH 2 2 2 HOH HOH X . C 3 HOH 3 4 4 HOH HOH X . C 3 HOH 4 5 5 HOH HOH X . C 3 HOH 5 6 6 HOH HOH X . D 3 HOH 1 15 3 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 X MSE 283 ? MET SELENOMETHIONINE 2 A MSE 106 X MSE 381 ? MET SELENOMETHIONINE 3 B OMU 14 A OMU 14 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5940 ? 1 MORE -31 ? 1 'SSA (A^2)' 14860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+3/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 110.2680000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 5 'Structure model' 1 4 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_ref_seq_dif.details' 14 5 'Structure model' '_chem_comp_atom.atom_id' 15 5 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 11.2839 24.3383 63.0024 0.1334 0.2500 0.1342 0.0243 -0.0134 0.0023 2.9781 4.8142 3.8322 0.0899 0.4285 0.6699 0.1470 -0.1001 -0.0468 -0.2495 -0.0741 0.3432 0.3084 0.1743 -0.4318 'X-RAY DIFFRACTION' 2 ? refined 32.0514 36.5411 58.4970 0.2757 0.2757 0.4162 0.0068 0.0015 -0.0854 2.6964 2.3205 0.7537 -1.8196 -1.4253 0.9672 -0.1590 0.3628 -0.2038 -0.2986 0.4047 -0.5886 0.1759 0.0919 0.1599 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X -10 X 9999 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A -10 A 9999 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN X 285 ? ? -120.65 -53.53 2 1 PRO X 366 ? ? -94.29 -157.61 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X PHE 284 ? CG ? A PHE 9 CG 2 1 Y 1 X PHE 284 ? CD1 ? A PHE 9 CD1 3 1 Y 1 X PHE 284 ? CD2 ? A PHE 9 CD2 4 1 Y 1 X PHE 284 ? CE1 ? A PHE 9 CE1 5 1 Y 1 X PHE 284 ? CE2 ? A PHE 9 CE2 6 1 Y 1 X PHE 284 ? CZ ? A PHE 9 CZ 7 1 Y 1 X GLN 289 ? CG ? A GLN 14 CG 8 1 Y 1 X GLN 289 ? CD ? A GLN 14 CD 9 1 Y 1 X GLN 289 ? OE1 ? A GLN 14 OE1 10 1 Y 1 X GLN 289 ? NE2 ? A GLN 14 NE2 11 1 Y 1 X LYS 294 ? CG ? A LYS 19 CG 12 1 Y 1 X LYS 294 ? CD ? A LYS 19 CD 13 1 Y 1 X LYS 294 ? CE ? A LYS 19 CE 14 1 Y 1 X LYS 294 ? NZ ? A LYS 19 NZ 15 1 Y 1 X GLN 298 ? OE1 ? A GLN 23 OE1 16 1 Y 1 X GLN 298 ? NE2 ? A GLN 23 NE2 17 1 Y 1 X LYS 301 ? CG ? A LYS 26 CG 18 1 Y 1 X LYS 301 ? CD ? A LYS 26 CD 19 1 Y 1 X LYS 301 ? CE ? A LYS 26 CE 20 1 Y 1 X LYS 301 ? NZ ? A LYS 26 NZ 21 1 Y 1 X GLU 302 ? CG ? A GLU 27 CG 22 1 Y 1 X GLU 302 ? CD ? A GLU 27 CD 23 1 Y 1 X GLU 302 ? OE1 ? A GLU 27 OE1 24 1 Y 1 X GLU 302 ? OE2 ? A GLU 27 OE2 25 1 Y 1 X GLU 339 ? CG ? A GLU 64 CG 26 1 Y 1 X GLU 339 ? CD ? A GLU 64 CD 27 1 Y 1 X GLU 339 ? OE1 ? A GLU 64 OE1 28 1 Y 1 X GLU 339 ? OE2 ? A GLU 64 OE2 29 1 Y 1 X GLU 353 ? CG ? A GLU 78 CG 30 1 Y 1 X GLU 353 ? CD ? A GLU 78 CD 31 1 Y 1 X GLU 353 ? OE1 ? A GLU 78 OE1 32 1 Y 1 X GLU 353 ? OE2 ? A GLU 78 OE2 33 1 Y 1 X LEU 392 ? CG ? A LEU 117 CG 34 1 Y 1 X LEU 392 ? CD1 ? A LEU 117 CD1 35 1 Y 1 X LEU 392 ? CD2 ? A LEU 117 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X SER 276 ? A SER 1 2 1 Y 1 X ARG 368 ? A ARG 93 3 1 Y 1 X ARG 369 ? A ARG 94 4 1 Y 1 X ARG 370 ? A ARG 95 5 1 Y 1 X GLY 371 ? A GLY 96 6 1 Y 1 X PRO 372 ? A PRO 97 7 1 Y 1 X GLY 373 ? A GLY 98 8 1 Y 1 X GLY 374 ? A GLY 99 9 1 Y 1 X THR 375 ? A THR 100 10 1 Y 1 X LEU 376 ? A LEU 101 11 1 Y 1 X PRO 377 ? A PRO 102 12 1 Y 1 X ASP 394 ? A ASP 119 13 1 Y 1 X LYS 395 ? A LYS 120 14 1 Y 1 X MET 396 ? A MET 121 15 1 Y 1 X ARG 397 ? A ARG 122 16 1 Y 1 X ASN 398 ? A ASN 123 17 1 Y 1 X ASP 399 ? A ASP 124 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 MSE N N N N 360 MSE CA C N S 361 MSE C C N N 362 MSE O O N N 363 MSE OXT O N N 364 MSE CB C N N 365 MSE CG C N N 366 MSE SE SE N N 367 MSE CE C N N 368 MSE H H N N 369 MSE H2 H N N 370 MSE HA H N N 371 MSE HXT H N N 372 MSE HB2 H N N 373 MSE HB3 H N N 374 MSE HG2 H N N 375 MSE HG3 H N N 376 MSE HE1 H N N 377 MSE HE2 H N N 378 MSE HE3 H N N 379 OMU N1 N N N 380 OMU C2 C N N 381 OMU N3 N N N 382 OMU C4 C N N 383 OMU C5 C N N 384 OMU C6 C N N 385 OMU O2 O N N 386 OMU O4 O N N 387 OMU "C1'" C N R 388 OMU "C2'" C N R 389 OMU "O2'" O N N 390 OMU CM2 C N N 391 OMU "C3'" C N R 392 OMU "C4'" C N R 393 OMU "O3'" O N N 394 OMU "O4'" O N N 395 OMU "C5'" C N N 396 OMU "O5'" O N N 397 OMU P P N N 398 OMU OP1 O N N 399 OMU OP2 O N N 400 OMU OP3 O N N 401 OMU HN3 H N N 402 OMU H5 H N N 403 OMU H6 H N N 404 OMU "H1'" H N N 405 OMU "H2'" H N N 406 OMU HM21 H N N 407 OMU HM22 H N N 408 OMU HM23 H N N 409 OMU "H3'" H N N 410 OMU "H4'" H N N 411 OMU "HO3'" H N N 412 OMU "H5'" H N N 413 OMU "H5''" H N N 414 OMU HOP2 H N N 415 OMU HOP3 H N N 416 PHE N N N N 417 PHE CA C N S 418 PHE C C N N 419 PHE O O N N 420 PHE CB C N N 421 PHE CG C Y N 422 PHE CD1 C Y N 423 PHE CD2 C Y N 424 PHE CE1 C Y N 425 PHE CE2 C Y N 426 PHE CZ C Y N 427 PHE OXT O N N 428 PHE H H N N 429 PHE H2 H N N 430 PHE HA H N N 431 PHE HB2 H N N 432 PHE HB3 H N N 433 PHE HD1 H N N 434 PHE HD2 H N N 435 PHE HE1 H N N 436 PHE HE2 H N N 437 PHE HZ H N N 438 PHE HXT H N N 439 PRO N N N N 440 PRO CA C N S 441 PRO C C N N 442 PRO O O N N 443 PRO CB C N N 444 PRO CG C N N 445 PRO CD C N N 446 PRO OXT O N N 447 PRO H H N N 448 PRO HA H N N 449 PRO HB2 H N N 450 PRO HB3 H N N 451 PRO HG2 H N N 452 PRO HG3 H N N 453 PRO HD2 H N N 454 PRO HD3 H N N 455 PRO HXT H N N 456 SER N N N N 457 SER CA C N S 458 SER C C N N 459 SER O O N N 460 SER CB C N N 461 SER OG O N N 462 SER OXT O N N 463 SER H H N N 464 SER H2 H N N 465 SER HA H N N 466 SER HB2 H N N 467 SER HB3 H N N 468 SER HG H N N 469 SER HXT H N N 470 THR N N N N 471 THR CA C N S 472 THR C C N N 473 THR O O N N 474 THR CB C N R 475 THR OG1 O N N 476 THR CG2 C N N 477 THR OXT O N N 478 THR H H N N 479 THR H2 H N N 480 THR HA H N N 481 THR HB H N N 482 THR HG1 H N N 483 THR HG21 H N N 484 THR HG22 H N N 485 THR HG23 H N N 486 THR HXT H N N 487 TRP N N N N 488 TRP CA C N S 489 TRP C C N N 490 TRP O O N N 491 TRP CB C N N 492 TRP CG C Y N 493 TRP CD1 C Y N 494 TRP CD2 C Y N 495 TRP NE1 N Y N 496 TRP CE2 C Y N 497 TRP CE3 C Y N 498 TRP CZ2 C Y N 499 TRP CZ3 C Y N 500 TRP CH2 C Y N 501 TRP OXT O N N 502 TRP H H N N 503 TRP H2 H N N 504 TRP HA H N N 505 TRP HB2 H N N 506 TRP HB3 H N N 507 TRP HD1 H N N 508 TRP HE1 H N N 509 TRP HE3 H N N 510 TRP HZ2 H N N 511 TRP HZ3 H N N 512 TRP HH2 H N N 513 TRP HXT H N N 514 TYR N N N N 515 TYR CA C N S 516 TYR C C N N 517 TYR O O N N 518 TYR CB C N N 519 TYR CG C Y N 520 TYR CD1 C Y N 521 TYR CD2 C Y N 522 TYR CE1 C Y N 523 TYR CE2 C Y N 524 TYR CZ C Y N 525 TYR OH O N N 526 TYR OXT O N N 527 TYR H H N N 528 TYR H2 H N N 529 TYR HA H N N 530 TYR HB2 H N N 531 TYR HB3 H N N 532 TYR HD1 H N N 533 TYR HD2 H N N 534 TYR HE1 H N N 535 TYR HE2 H N N 536 TYR HH H N N 537 TYR HXT H N N 538 U OP3 O N N 539 U P P N N 540 U OP1 O N N 541 U OP2 O N N 542 U "O5'" O N N 543 U "C5'" C N N 544 U "C4'" C N R 545 U "O4'" O N N 546 U "C3'" C N S 547 U "O3'" O N N 548 U "C2'" C N R 549 U "O2'" O N N 550 U "C1'" C N R 551 U N1 N N N 552 U C2 C N N 553 U O2 O N N 554 U N3 N N N 555 U C4 C N N 556 U O4 O N N 557 U C5 C N N 558 U C6 C N N 559 U HOP3 H N N 560 U HOP2 H N N 561 U "H5'" H N N 562 U "H5''" H N N 563 U "H4'" H N N 564 U "H3'" H N N 565 U "HO3'" H N N 566 U "H2'" H N N 567 U "HO2'" H N N 568 U "H1'" H N N 569 U H3 H N N 570 U H5 H N N 571 U H6 H N N 572 VAL N N N N 573 VAL CA C N S 574 VAL C C N N 575 VAL O O N N 576 VAL CB C N N 577 VAL CG1 C N N 578 VAL CG2 C N N 579 VAL OXT O N N 580 VAL H H N N 581 VAL H2 H N N 582 VAL HA H N N 583 VAL HB H N N 584 VAL HG11 H N N 585 VAL HG12 H N N 586 VAL HG13 H N N 587 VAL HG21 H N N 588 VAL HG22 H N N 589 VAL HG23 H N N 590 VAL HXT H N N 591 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 MSE N CA sing N N 352 MSE N H sing N N 353 MSE N H2 sing N N 354 MSE CA C sing N N 355 MSE CA CB sing N N 356 MSE CA HA sing N N 357 MSE C O doub N N 358 MSE C OXT sing N N 359 MSE OXT HXT sing N N 360 MSE CB CG sing N N 361 MSE CB HB2 sing N N 362 MSE CB HB3 sing N N 363 MSE CG SE sing N N 364 MSE CG HG2 sing N N 365 MSE CG HG3 sing N N 366 MSE SE CE sing N N 367 MSE CE HE1 sing N N 368 MSE CE HE2 sing N N 369 MSE CE HE3 sing N N 370 OMU N1 C2 sing N N 371 OMU N1 C6 sing N N 372 OMU N1 "C1'" sing N N 373 OMU C2 N3 sing N N 374 OMU C2 O2 doub N N 375 OMU N3 C4 sing N N 376 OMU N3 HN3 sing N N 377 OMU C4 C5 sing N N 378 OMU C4 O4 doub N N 379 OMU C5 C6 doub N N 380 OMU C5 H5 sing N N 381 OMU C6 H6 sing N N 382 OMU "C1'" "C2'" sing N N 383 OMU "C1'" "O4'" sing N N 384 OMU "C1'" "H1'" sing N N 385 OMU "C2'" "O2'" sing N N 386 OMU "C2'" "C3'" sing N N 387 OMU "C2'" "H2'" sing N N 388 OMU "O2'" CM2 sing N N 389 OMU CM2 HM21 sing N N 390 OMU CM2 HM22 sing N N 391 OMU CM2 HM23 sing N N 392 OMU "C3'" "C4'" sing N N 393 OMU "C3'" "O3'" sing N N 394 OMU "C3'" "H3'" sing N N 395 OMU "C4'" "O4'" sing N N 396 OMU "C4'" "C5'" sing N N 397 OMU "C4'" "H4'" sing N N 398 OMU "O3'" "HO3'" sing N N 399 OMU "C5'" "O5'" sing N N 400 OMU "C5'" "H5'" sing N N 401 OMU "C5'" "H5''" sing N N 402 OMU "O5'" P sing N N 403 OMU P OP1 doub N N 404 OMU P OP2 sing N N 405 OMU P OP3 sing N N 406 OMU OP2 HOP2 sing N N 407 OMU OP3 HOP3 sing N N 408 PHE N CA sing N N 409 PHE N H sing N N 410 PHE N H2 sing N N 411 PHE CA C sing N N 412 PHE CA CB sing N N 413 PHE CA HA sing N N 414 PHE C O doub N N 415 PHE C OXT sing N N 416 PHE CB CG sing N N 417 PHE CB HB2 sing N N 418 PHE CB HB3 sing N N 419 PHE CG CD1 doub Y N 420 PHE CG CD2 sing Y N 421 PHE CD1 CE1 sing Y N 422 PHE CD1 HD1 sing N N 423 PHE CD2 CE2 doub Y N 424 PHE CD2 HD2 sing N N 425 PHE CE1 CZ doub Y N 426 PHE CE1 HE1 sing N N 427 PHE CE2 CZ sing Y N 428 PHE CE2 HE2 sing N N 429 PHE CZ HZ sing N N 430 PHE OXT HXT sing N N 431 PRO N CA sing N N 432 PRO N CD sing N N 433 PRO N H sing N N 434 PRO CA C sing N N 435 PRO CA CB sing N N 436 PRO CA HA sing N N 437 PRO C O doub N N 438 PRO C OXT sing N N 439 PRO CB CG sing N N 440 PRO CB HB2 sing N N 441 PRO CB HB3 sing N N 442 PRO CG CD sing N N 443 PRO CG HG2 sing N N 444 PRO CG HG3 sing N N 445 PRO CD HD2 sing N N 446 PRO CD HD3 sing N N 447 PRO OXT HXT sing N N 448 SER N CA sing N N 449 SER N H sing N N 450 SER N H2 sing N N 451 SER CA C sing N N 452 SER CA CB sing N N 453 SER CA HA sing N N 454 SER C O doub N N 455 SER C OXT sing N N 456 SER CB OG sing N N 457 SER CB HB2 sing N N 458 SER CB HB3 sing N N 459 SER OG HG sing N N 460 SER OXT HXT sing N N 461 THR N CA sing N N 462 THR N H sing N N 463 THR N H2 sing N N 464 THR CA C sing N N 465 THR CA CB sing N N 466 THR CA HA sing N N 467 THR C O doub N N 468 THR C OXT sing N N 469 THR CB OG1 sing N N 470 THR CB CG2 sing N N 471 THR CB HB sing N N 472 THR OG1 HG1 sing N N 473 THR CG2 HG21 sing N N 474 THR CG2 HG22 sing N N 475 THR CG2 HG23 sing N N 476 THR OXT HXT sing N N 477 TRP N CA sing N N 478 TRP N H sing N N 479 TRP N H2 sing N N 480 TRP CA C sing N N 481 TRP CA CB sing N N 482 TRP CA HA sing N N 483 TRP C O doub N N 484 TRP C OXT sing N N 485 TRP CB CG sing N N 486 TRP CB HB2 sing N N 487 TRP CB HB3 sing N N 488 TRP CG CD1 doub Y N 489 TRP CG CD2 sing Y N 490 TRP CD1 NE1 sing Y N 491 TRP CD1 HD1 sing N N 492 TRP CD2 CE2 doub Y N 493 TRP CD2 CE3 sing Y N 494 TRP NE1 CE2 sing Y N 495 TRP NE1 HE1 sing N N 496 TRP CE2 CZ2 sing Y N 497 TRP CE3 CZ3 doub Y N 498 TRP CE3 HE3 sing N N 499 TRP CZ2 CH2 doub Y N 500 TRP CZ2 HZ2 sing N N 501 TRP CZ3 CH2 sing Y N 502 TRP CZ3 HZ3 sing N N 503 TRP CH2 HH2 sing N N 504 TRP OXT HXT sing N N 505 TYR N CA sing N N 506 TYR N H sing N N 507 TYR N H2 sing N N 508 TYR CA C sing N N 509 TYR CA CB sing N N 510 TYR CA HA sing N N 511 TYR C O doub N N 512 TYR C OXT sing N N 513 TYR CB CG sing N N 514 TYR CB HB2 sing N N 515 TYR CB HB3 sing N N 516 TYR CG CD1 doub Y N 517 TYR CG CD2 sing Y N 518 TYR CD1 CE1 sing Y N 519 TYR CD1 HD1 sing N N 520 TYR CD2 CE2 doub Y N 521 TYR CD2 HD2 sing N N 522 TYR CE1 CZ doub Y N 523 TYR CE1 HE1 sing N N 524 TYR CE2 CZ sing Y N 525 TYR CE2 HE2 sing N N 526 TYR CZ OH sing N N 527 TYR OH HH sing N N 528 TYR OXT HXT sing N N 529 U OP3 P sing N N 530 U OP3 HOP3 sing N N 531 U P OP1 doub N N 532 U P OP2 sing N N 533 U P "O5'" sing N N 534 U OP2 HOP2 sing N N 535 U "O5'" "C5'" sing N N 536 U "C5'" "C4'" sing N N 537 U "C5'" "H5'" sing N N 538 U "C5'" "H5''" sing N N 539 U "C4'" "O4'" sing N N 540 U "C4'" "C3'" sing N N 541 U "C4'" "H4'" sing N N 542 U "O4'" "C1'" sing N N 543 U "C3'" "O3'" sing N N 544 U "C3'" "C2'" sing N N 545 U "C3'" "H3'" sing N N 546 U "O3'" "HO3'" sing N N 547 U "C2'" "O2'" sing N N 548 U "C2'" "C1'" sing N N 549 U "C2'" "H2'" sing N N 550 U "O2'" "HO2'" sing N N 551 U "C1'" N1 sing N N 552 U "C1'" "H1'" sing N N 553 U N1 C2 sing N N 554 U N1 C6 sing N N 555 U C2 O2 doub N N 556 U C2 N3 sing N N 557 U N3 C4 sing N N 558 U N3 H3 sing N N 559 U C4 O4 doub N N 560 U C4 C5 sing N N 561 U C5 C6 doub N N 562 U C5 H5 sing N N 563 U C6 H6 sing N N 564 VAL N CA sing N N 565 VAL N H sing N N 566 VAL N H2 sing N N 567 VAL CA C sing N N 568 VAL CA CB sing N N 569 VAL CA HA sing N N 570 VAL C O doub N N 571 VAL C OXT sing N N 572 VAL CB CG1 sing N N 573 VAL CB CG2 sing N N 574 VAL CB HB sing N N 575 VAL CG1 HG11 sing N N 576 VAL CG1 HG12 sing N N 577 VAL CG1 HG13 sing N N 578 VAL CG2 HG21 sing N N 579 VAL CG2 HG22 sing N N 580 VAL CG2 HG23 sing N N 581 VAL OXT HXT sing N N 582 # _ndb_struct_conf_na.entry_id 3O6E _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 12 7_555 -0.245 -0.192 -0.133 -17.067 -2.101 0.765 1 A_G1:C12_A A 1 ? A 12 ? 19 1 1 B C 2 1_555 B G 11 7_555 0.382 -0.250 -0.148 4.149 -6.820 -4.297 2 A_C2:G11_A A 2 ? A 11 ? 19 1 1 B G 3 1_555 B C 10 7_555 0.079 -0.235 -0.063 3.878 -8.537 -1.580 3 A_G3:C10_A A 3 ? A 10 ? 19 1 1 B A 4 1_555 B U 9 7_555 -0.059 0.189 -0.073 -4.243 -4.853 10.113 4 A_A4:U9_A A 4 ? A 9 ? ? 1 1 B A 5 1_555 B U 8 7_555 -0.031 -0.196 -0.168 -4.469 -19.428 4.843 5 A_A5:U8_A A 5 ? A 8 ? 20 1 1 B U 6 1_555 B A 7 7_555 -0.144 0.124 -0.138 3.600 -12.010 5.111 6 A_U6:A7_A A 6 ? A 7 ? 20 1 1 B A 7 1_555 B U 6 7_555 0.144 0.124 -0.138 -3.600 -12.010 5.111 7 A_A7:U6_A A 7 ? A 6 ? 20 1 1 B U 8 1_555 B A 5 7_555 0.031 -0.196 -0.168 4.469 -19.428 4.843 8 A_U8:A5_A A 8 ? A 5 ? 20 1 1 B U 9 1_555 B A 4 7_555 0.059 0.189 -0.073 4.243 -4.853 10.113 9 A_U9:A4_A A 9 ? A 4 ? ? 1 1 B C 10 1_555 B G 3 7_555 -0.079 -0.235 -0.063 -3.878 -8.537 -1.580 10 A_C10:G3_A A 10 ? A 3 ? 19 1 1 B G 11 1_555 B C 2 7_555 -0.382 -0.250 -0.148 -4.149 -6.819 -4.297 11 A_G11:C2_A A 11 ? A 2 ? 19 1 1 B C 12 1_555 B G 1 7_555 0.245 -0.192 -0.133 17.067 -2.101 0.765 12 A_C12:G1_A A 12 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 12 7_555 B C 2 1_555 B G 11 7_555 -0.947 -1.242 2.952 -0.065 3.023 29.424 -2.999 1.844 2.815 5.933 0.127 29.576 1 AA_G1C2:G11C12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 B C 2 1_555 B G 11 7_555 B G 3 1_555 B C 10 7_555 1.537 -2.036 3.423 0.032 5.150 24.770 -6.123 -3.501 2.948 11.842 -0.074 25.291 2 AA_C2G3:C10G11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 B G 3 1_555 B C 10 7_555 B A 4 1_555 B U 9 7_555 -0.601 -2.250 3.354 -4.005 6.625 29.200 -5.618 0.369 2.841 12.858 7.774 30.187 3 AA_G3A4:U9C10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 B A 4 1_555 B U 9 7_555 B A 5 1_555 B U 8 7_555 -0.560 -1.389 3.442 1.380 6.837 29.991 -3.957 1.327 3.030 12.991 -2.623 30.774 4 AA_A4A5:U8U9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 B A 5 1_555 B U 8 7_555 B U 6 1_555 B A 7 7_555 -0.059 -1.020 3.044 -0.272 13.524 29.432 -3.908 0.065 2.361 25.021 0.504 32.329 5 AA_A5U6:A7U8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 B U 6 1_555 B A 7 7_555 B A 7 1_555 B U 6 7_555 0.000 -1.412 3.292 0.000 20.961 27.451 -5.238 0.000 1.797 37.941 0.000 34.416 6 AA_U6A7:U6A7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 B A 7 1_555 B U 6 7_555 B U 8 1_555 B A 5 7_555 0.059 -1.020 3.044 0.272 13.524 29.432 -3.908 -0.065 2.361 25.021 -0.504 32.329 7 AA_A7U8:A5U6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 B U 8 1_555 B A 5 7_555 B U 9 1_555 B A 4 7_555 0.560 -1.389 3.442 -1.380 6.837 29.991 -3.957 -1.327 3.030 12.991 2.623 30.774 8 AA_U8U9:A4A5_AA A 8 ? A 5 ? A 9 ? A 4 ? 1 B U 9 1_555 B A 4 7_555 B C 10 1_555 B G 3 7_555 0.601 -2.250 3.354 4.005 6.625 29.200 -5.618 -0.369 2.841 12.858 -7.774 30.187 9 AA_U9C10:G3A4_AA A 9 ? A 4 ? A 10 ? A 3 ? 1 B C 10 1_555 B G 3 7_555 B G 11 1_555 B C 2 7_555 -1.537 -2.036 3.423 -0.032 5.150 24.770 -6.123 3.501 2.948 11.842 0.074 25.291 10 AA_C10G11:C2G3_AA A 10 ? A 3 ? A 11 ? A 2 ? 1 B G 11 1_555 B C 2 7_555 B C 12 1_555 B G 1 7_555 0.947 -1.242 2.952 0.065 3.023 29.424 -2.999 -1.844 2.815 5.932 -0.127 29.576 11 AA_G11C12:G1C2_AA A 11 ? A 2 ? A 12 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3O7V _pdbx_initial_refinement_model.details 'PDB ENTRY 3O7V' #