data_3PTJ # _entry.id 3PTJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PTJ RCSB RCSB062794 WWPDB D_1000062794 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3PVH . unspecified PDB 3PW9 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PTJ _pdbx_database_status.recvd_initial_deposition_date 2010-12-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wu, H.Y.' 1 'Liu, M.S.' 2 'Lin, T.P.' 3 'Cheng, Y.S.' 4 # _citation.id primary _citation.title 'Structural and functional assays of AtTLP18.3 identify its novel acid phosphatase activity in thylakoid lumen' _citation.journal_abbrev 'Plant Physiol.' _citation.journal_volume 157 _citation.page_first 1015 _citation.page_last 1025 _citation.year 2011 _citation.journal_id_ASTM PLPHAY _citation.country US _citation.journal_id_ISSN 0032-0889 _citation.journal_id_CSD 0765 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21908686 _citation.pdbx_database_id_DOI 10.1104/pp.111.184739 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wu, H.Y.' 1 primary 'Liu, M.S.' 2 primary 'Lin, T.P.' 3 primary 'Cheng, Y.S.' 4 # _cell.entry_id 3PTJ _cell.length_a 46.977 _cell.length_b 49.839 _cell.length_c 76.672 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PTJ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0603 protein At1g54780, chloroplastic' 16779.549 1 ? 'L128M, I159M' 'Phosphatase domain, UNP residues 84-235' ? 2 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AtTLP18.3, Thylakoid lumen 18.3 kDa protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKK(MSE)RLNFITVRKLTSKADAFEYADQVLEKWYPS (MSE)EEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGG P ; _entity_poly.pdbx_seq_one_letter_code_can ;SASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKMRLNFITVRKLTSKADAFEYADQVLEKWYPSMEEG NNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 SER n 1 4 GLU n 1 5 PHE n 1 6 ASN n 1 7 ILE n 1 8 LEU n 1 9 ASN n 1 10 ASP n 1 11 GLY n 1 12 PRO n 1 13 PRO n 1 14 LYS n 1 15 GLU n 1 16 THR n 1 17 TYR n 1 18 VAL n 1 19 VAL n 1 20 ASP n 1 21 ASP n 1 22 ALA n 1 23 GLY n 1 24 VAL n 1 25 LEU n 1 26 SER n 1 27 ARG n 1 28 VAL n 1 29 THR n 1 30 LYS n 1 31 SER n 1 32 ASP n 1 33 LEU n 1 34 LYS n 1 35 LYS n 1 36 LEU n 1 37 LEU n 1 38 SER n 1 39 ASP n 1 40 LEU n 1 41 GLU n 1 42 TYR n 1 43 ARG n 1 44 LYS n 1 45 LYS n 1 46 MSE n 1 47 ARG n 1 48 LEU n 1 49 ASN n 1 50 PHE n 1 51 ILE n 1 52 THR n 1 53 VAL n 1 54 ARG n 1 55 LYS n 1 56 LEU n 1 57 THR n 1 58 SER n 1 59 LYS n 1 60 ALA n 1 61 ASP n 1 62 ALA n 1 63 PHE n 1 64 GLU n 1 65 TYR n 1 66 ALA n 1 67 ASP n 1 68 GLN n 1 69 VAL n 1 70 LEU n 1 71 GLU n 1 72 LYS n 1 73 TRP n 1 74 TYR n 1 75 PRO n 1 76 SER n 1 77 MSE n 1 78 GLU n 1 79 GLU n 1 80 GLY n 1 81 ASN n 1 82 ASN n 1 83 LYS n 1 84 GLY n 1 85 ILE n 1 86 VAL n 1 87 VAL n 1 88 LEU n 1 89 ILE n 1 90 THR n 1 91 SER n 1 92 GLN n 1 93 LYS n 1 94 GLU n 1 95 GLY n 1 96 ALA n 1 97 ILE n 1 98 THR n 1 99 GLY n 1 100 GLY n 1 101 PRO n 1 102 ALA n 1 103 PHE n 1 104 ILE n 1 105 GLU n 1 106 ALA n 1 107 VAL n 1 108 GLY n 1 109 GLU n 1 110 ASN n 1 111 ILE n 1 112 LEU n 1 113 ASP n 1 114 ALA n 1 115 THR n 1 116 VAL n 1 117 SER n 1 118 GLU n 1 119 ASN n 1 120 LEU n 1 121 PRO n 1 122 VAL n 1 123 LEU n 1 124 ALA n 1 125 THR n 1 126 ASP n 1 127 GLU n 1 128 LYS n 1 129 TYR n 1 130 ASN n 1 131 GLU n 1 132 ALA n 1 133 VAL n 1 134 TYR n 1 135 SER n 1 136 SER n 1 137 ALA n 1 138 LYS n 1 139 ARG n 1 140 LEU n 1 141 VAL n 1 142 ALA n 1 143 ALA n 1 144 ILE n 1 145 ASP n 1 146 GLY n 1 147 GLN n 1 148 PRO n 1 149 ASP n 1 150 PRO n 1 151 GLY n 1 152 GLY n 1 153 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At1g54780, T22H22.19' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'cv. Columbia' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code U603_ARATH _struct_ref.pdbx_db_accession Q9ZVL6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGN NKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP ; _struct_ref.pdbx_align_begin 84 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PTJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ZVL6 _struct_ref_seq.db_align_beg 84 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 235 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 84 _struct_ref_seq.pdbx_auth_seq_align_end 235 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PTJ SER A 1 ? UNP Q9ZVL6 ? ? 'EXPRESSION TAG' 83 1 1 3PTJ MSE A 46 ? UNP Q9ZVL6 LEU 128 'ENGINEERED MUTATION' 128 2 1 3PTJ MSE A 77 ? UNP Q9ZVL6 ILE 159 'ENGINEERED MUTATION' 159 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PTJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 54.01 _exptl_crystal.description 'THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;0.2M Sodium acetate trihydrate, 0.1M Sodium cacodylate, 25-30% (w/v) Polyethylene glycol 4000, 2mM TCEP , pH 6.0, VAPOR DIFFUSION, temperature 296K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-12-21 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111) Double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97884 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97884 # _reflns.entry_id 3PTJ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.60 _reflns.number_obs 11594 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 30.8 _reflns.B_iso_Wilson_estimate 33.5 _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_rejects _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.60 2.69 99.6 0.055 0.062 38.4 10.2 ? 567 ? ? ? ? ? ? ? ? ? ? ? ? ? 1 1 2.69 2.80 99.8 0.060 0.062 38.2 10.2 ? 584 ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 2.80 2.93 99.3 0.057 0.056 39.1 10.2 ? 579 ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 2.93 3.08 99.5 0.048 0.049 40.5 10.1 ? 560 ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 3.08 3.28 99.1 0.044 0.043 45.2 10.2 ? 582 ? ? ? ? ? ? ? ? ? ? ? ? ? 5 1 3.28 3.53 98.1 0.045 0.042 41.5 9.9 ? 569 ? ? ? ? ? ? ? ? ? ? ? ? ? 6 1 3.53 3.88 98.1 0.048 0.043 36.4 9.7 ? 579 ? ? ? ? ? ? ? ? ? ? ? ? ? 7 1 3.88 4.44 95.8 0.049 0.045 29.9 9.4 ? 570 ? ? ? ? ? ? ? ? ? ? ? ? ? 8 1 4.44 5.59 95.1 0.044 0.044 26.5 9.2 ? 586 ? ? ? ? ? ? ? ? ? ? ? ? ? 9 1 5.59 30.00 94.4 0.049 0.049 22.9 9.4 ? 621 ? ? ? ? ? ? ? ? ? ? ? ? ? 10 1 # _refine.entry_id 3PTJ _refine.ls_number_reflns_obs 10497 _refine.ls_number_reflns_all 10699 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.269 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 552 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 32.44 _refine.aniso_B[1][1] 0.843 _refine.aniso_B[2][2] -8.148 _refine.aniso_B[3][3] 7.305 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_bsol 36.1400 _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'SF file contains Friedel pairs' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3PTJ _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1174 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1241 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_torsion_deg 22.5 ? ? ? 'X-RAY DIFFRACTION' ? c_torsion_impr_deg 1.17 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.429 1.500 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.351 2.000 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.382 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.473 2.500 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' . 2.60 2.72 . 0.211 98.4 0.304 0.035 . 74 . . 1307 . 'X-RAY DIFFRACTION' . 2.72 2.86 . 0.221 98.8 0.369 0.051 . 52 . . 1353 . 'X-RAY DIFFRACTION' . 2.86 3.04 . 0.224 99.5 0.323 0.037 . 78 . . 1307 . 'X-RAY DIFFRACTION' . 3.04 3.27 . 0.194 99.2 0.234 0.028 . 68 . . 1335 . 'X-RAY DIFFRACTION' . 3.27 3.60 . 0.177 97.9 0.236 0.027 . 79 . . 1311 . 'X-RAY DIFFRACTION' . 3.60 4.12 . 0.181 98.2 0.293 0.036 . 65 . . 1318 . 'X-RAY DIFFRACTION' . 4.12 5.19 . 0.183 95.6 0.210 0.024 . 75 . . 1267 . 'X-RAY DIFFRACTION' . 5.19 30.00 . 0.234 97.1 0.308 0.039 . 61 . . 1299 . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 glycerol.param glycerol.top # _struct.entry_id 3PTJ _struct.title 'Structural and functional Analysis of Arabidopsis thaliana thylakoid lumen protein AtTLP18.3' _struct.pdbx_descriptor 'UPF0603 protein At1g54780, chloroplastic' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PTJ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'TAP domain, Rossmann fold, Acid Phosphatase, Arabidopsis thaliana thylakoid lumen, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ASP A 10 ? SER A 83 ASP A 92 1 ? 10 HELX_P HELX_P2 2 SER A 26 ? LYS A 45 ? SER A 108 LYS A 127 1 ? 20 HELX_P HELX_P3 3 ASP A 61 ? TYR A 74 ? ASP A 143 TYR A 156 1 ? 14 HELX_P HELX_P4 4 SER A 76 ? ASN A 81 ? SER A 158 ASN A 163 1 ? 6 HELX_P HELX_P5 5 GLY A 100 ? GLY A 108 ? GLY A 182 GLY A 190 1 ? 9 HELX_P HELX_P6 6 GLY A 108 ? GLU A 118 ? GLY A 190 GLU A 200 1 ? 11 HELX_P HELX_P7 7 GLU A 118 ? ASP A 126 ? GLU A 200 ASP A 208 1 ? 9 HELX_P HELX_P8 8 LYS A 128 ? ASP A 145 ? LYS A 210 ASP A 227 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 45 C ? ? ? 1_555 A MSE 46 N ? ? A LYS 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 46 C ? ? ? 1_555 A ARG 47 N ? ? A MSE 128 A ARG 129 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A SER 76 C ? ? ? 1_555 A MSE 77 N ? ? A SER 158 A MSE 159 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 77 C ? ? ? 1_555 A GLU 78 N ? ? A MSE 159 A GLU 160 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 18 ? ASP A 20 ? VAL A 100 ASP A 102 A 2 ARG A 47 ? VAL A 53 ? ARG A 129 VAL A 135 A 3 LYS A 83 ? ILE A 89 ? LYS A 165 ILE A 171 A 4 GLU A 94 ? GLY A 99 ? GLU A 176 GLY A 181 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 19 ? N VAL A 101 O THR A 52 ? O THR A 134 A 2 3 N ASN A 49 ? N ASN A 131 O GLY A 84 ? O GLY A 166 A 3 4 N ILE A 89 ? N ILE A 171 O GLU A 94 ? O GLU A 176 # _database_PDB_matrix.entry_id 3PTJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PTJ _atom_sites.fract_transf_matrix[1][1] 0.021287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020065 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013043 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 83 83 SER SER A . n A 1 2 ALA 2 84 84 ALA ALA A . n A 1 3 SER 3 85 85 SER SER A . n A 1 4 GLU 4 86 86 GLU GLU A . n A 1 5 PHE 5 87 87 PHE PHE A . n A 1 6 ASN 6 88 88 ASN ASN A . n A 1 7 ILE 7 89 89 ILE ILE A . n A 1 8 LEU 8 90 90 LEU LEU A . n A 1 9 ASN 9 91 91 ASN ASN A . n A 1 10 ASP 10 92 92 ASP ASP A . n A 1 11 GLY 11 93 93 GLY GLY A . n A 1 12 PRO 12 94 94 PRO PRO A . n A 1 13 PRO 13 95 95 PRO PRO A . n A 1 14 LYS 14 96 96 LYS LYS A . n A 1 15 GLU 15 97 97 GLU GLU A . n A 1 16 THR 16 98 98 THR THR A . n A 1 17 TYR 17 99 99 TYR TYR A . n A 1 18 VAL 18 100 100 VAL VAL A . n A 1 19 VAL 19 101 101 VAL VAL A . n A 1 20 ASP 20 102 102 ASP ASP A . n A 1 21 ASP 21 103 103 ASP ASP A . n A 1 22 ALA 22 104 104 ALA ALA A . n A 1 23 GLY 23 105 105 GLY GLY A . n A 1 24 VAL 24 106 106 VAL VAL A . n A 1 25 LEU 25 107 107 LEU LEU A . n A 1 26 SER 26 108 108 SER SER A . n A 1 27 ARG 27 109 109 ARG ARG A . n A 1 28 VAL 28 110 110 VAL VAL A . n A 1 29 THR 29 111 111 THR THR A . n A 1 30 LYS 30 112 112 LYS LYS A . n A 1 31 SER 31 113 113 SER SER A . n A 1 32 ASP 32 114 114 ASP ASP A . n A 1 33 LEU 33 115 115 LEU LEU A . n A 1 34 LYS 34 116 116 LYS LYS A . n A 1 35 LYS 35 117 117 LYS LYS A . n A 1 36 LEU 36 118 118 LEU LEU A . n A 1 37 LEU 37 119 119 LEU LEU A . n A 1 38 SER 38 120 120 SER SER A . n A 1 39 ASP 39 121 121 ASP ASP A . n A 1 40 LEU 40 122 122 LEU LEU A . n A 1 41 GLU 41 123 123 GLU GLU A . n A 1 42 TYR 42 124 124 TYR TYR A . n A 1 43 ARG 43 125 125 ARG ARG A . n A 1 44 LYS 44 126 126 LYS LYS A . n A 1 45 LYS 45 127 127 LYS LYS A . n A 1 46 MSE 46 128 128 MSE MSE A . n A 1 47 ARG 47 129 129 ARG ARG A . n A 1 48 LEU 48 130 130 LEU LEU A . n A 1 49 ASN 49 131 131 ASN ASN A . n A 1 50 PHE 50 132 132 PHE PHE A . n A 1 51 ILE 51 133 133 ILE ILE A . n A 1 52 THR 52 134 134 THR THR A . n A 1 53 VAL 53 135 135 VAL VAL A . n A 1 54 ARG 54 136 136 ARG ARG A . n A 1 55 LYS 55 137 137 LYS LYS A . n A 1 56 LEU 56 138 138 LEU LEU A . n A 1 57 THR 57 139 139 THR THR A . n A 1 58 SER 58 140 140 SER SER A . n A 1 59 LYS 59 141 141 LYS LYS A . n A 1 60 ALA 60 142 142 ALA ALA A . n A 1 61 ASP 61 143 143 ASP ASP A . n A 1 62 ALA 62 144 144 ALA ALA A . n A 1 63 PHE 63 145 145 PHE PHE A . n A 1 64 GLU 64 146 146 GLU GLU A . n A 1 65 TYR 65 147 147 TYR TYR A . n A 1 66 ALA 66 148 148 ALA ALA A . n A 1 67 ASP 67 149 149 ASP ASP A . n A 1 68 GLN 68 150 150 GLN GLN A . n A 1 69 VAL 69 151 151 VAL VAL A . n A 1 70 LEU 70 152 152 LEU LEU A . n A 1 71 GLU 71 153 153 GLU GLU A . n A 1 72 LYS 72 154 154 LYS LYS A . n A 1 73 TRP 73 155 155 TRP TRP A . n A 1 74 TYR 74 156 156 TYR TYR A . n A 1 75 PRO 75 157 157 PRO PRO A . n A 1 76 SER 76 158 158 SER SER A . n A 1 77 MSE 77 159 159 MSE MSE A . n A 1 78 GLU 78 160 160 GLU GLU A . n A 1 79 GLU 79 161 161 GLU GLU A . n A 1 80 GLY 80 162 162 GLY GLY A . n A 1 81 ASN 81 163 163 ASN ASN A . n A 1 82 ASN 82 164 164 ASN ASN A . n A 1 83 LYS 83 165 165 LYS LYS A . n A 1 84 GLY 84 166 166 GLY GLY A . n A 1 85 ILE 85 167 167 ILE ILE A . n A 1 86 VAL 86 168 168 VAL VAL A . n A 1 87 VAL 87 169 169 VAL VAL A . n A 1 88 LEU 88 170 170 LEU LEU A . n A 1 89 ILE 89 171 171 ILE ILE A . n A 1 90 THR 90 172 172 THR THR A . n A 1 91 SER 91 173 173 SER SER A . n A 1 92 GLN 92 174 174 GLN GLN A . n A 1 93 LYS 93 175 175 LYS LYS A . n A 1 94 GLU 94 176 176 GLU GLU A . n A 1 95 GLY 95 177 177 GLY GLY A . n A 1 96 ALA 96 178 178 ALA ALA A . n A 1 97 ILE 97 179 179 ILE ILE A . n A 1 98 THR 98 180 180 THR THR A . n A 1 99 GLY 99 181 181 GLY GLY A . n A 1 100 GLY 100 182 182 GLY GLY A . n A 1 101 PRO 101 183 183 PRO PRO A . n A 1 102 ALA 102 184 184 ALA ALA A . n A 1 103 PHE 103 185 185 PHE PHE A . n A 1 104 ILE 104 186 186 ILE ILE A . n A 1 105 GLU 105 187 187 GLU GLU A . n A 1 106 ALA 106 188 188 ALA ALA A . n A 1 107 VAL 107 189 189 VAL VAL A . n A 1 108 GLY 108 190 190 GLY GLY A . n A 1 109 GLU 109 191 191 GLU GLU A . n A 1 110 ASN 110 192 192 ASN ASN A . n A 1 111 ILE 111 193 193 ILE ILE A . n A 1 112 LEU 112 194 194 LEU LEU A . n A 1 113 ASP 113 195 195 ASP ASP A . n A 1 114 ALA 114 196 196 ALA ALA A . n A 1 115 THR 115 197 197 THR THR A . n A 1 116 VAL 116 198 198 VAL VAL A . n A 1 117 SER 117 199 199 SER SER A . n A 1 118 GLU 118 200 200 GLU GLU A . n A 1 119 ASN 119 201 201 ASN ASN A . n A 1 120 LEU 120 202 202 LEU LEU A . n A 1 121 PRO 121 203 203 PRO PRO A . n A 1 122 VAL 122 204 204 VAL VAL A . n A 1 123 LEU 123 205 205 LEU LEU A . n A 1 124 ALA 124 206 206 ALA ALA A . n A 1 125 THR 125 207 207 THR THR A . n A 1 126 ASP 126 208 208 ASP ASP A . n A 1 127 GLU 127 209 209 GLU GLU A . n A 1 128 LYS 128 210 210 LYS LYS A . n A 1 129 TYR 129 211 211 TYR TYR A . n A 1 130 ASN 130 212 212 ASN ASN A . n A 1 131 GLU 131 213 213 GLU GLU A . n A 1 132 ALA 132 214 214 ALA ALA A . n A 1 133 VAL 133 215 215 VAL VAL A . n A 1 134 TYR 134 216 216 TYR TYR A . n A 1 135 SER 135 217 217 SER SER A . n A 1 136 SER 136 218 218 SER SER A . n A 1 137 ALA 137 219 219 ALA ALA A . n A 1 138 LYS 138 220 220 LYS LYS A . n A 1 139 ARG 139 221 221 ARG ARG A . n A 1 140 LEU 140 222 222 LEU LEU A . n A 1 141 VAL 141 223 223 VAL VAL A . n A 1 142 ALA 142 224 224 ALA ALA A . n A 1 143 ALA 143 225 225 ALA ALA A . n A 1 144 ILE 144 226 226 ILE ILE A . n A 1 145 ASP 145 227 227 ASP ASP A . n A 1 146 GLY 146 228 228 GLY GLY A . n A 1 147 GLN 147 229 229 GLN GLN A . n A 1 148 PRO 148 230 230 PRO PRO A . n A 1 149 ASP 149 231 231 ASP ASP A . n A 1 150 PRO 150 232 232 PRO PRO A . n A 1 151 GLY 151 233 233 GLY GLY A . n A 1 152 GLY 152 234 234 GLY GLY A . n A 1 153 PRO 153 235 235 PRO PRO A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 46 A MSE 128 ? MET SELENOMETHIONINE 2 A MSE 77 A MSE 159 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-26 2 'Structure model' 1 1 2012-01-25 3 'Structure model' 1 2 2014-11-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 92 ? ? -88.48 37.30 2 1 ASP A 102 ? ? -91.94 56.74 3 1 PRO A 157 ? ? -57.83 1.77 4 1 GLU A 200 ? ? -115.50 -85.19 5 1 LYS A 210 ? ? -104.36 61.08 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH WAT A . B 2 HOH 2 2 2 HOH WAT A . B 2 HOH 3 3 3 HOH WAT A . B 2 HOH 4 4 4 HOH WAT A . B 2 HOH 5 5 5 HOH WAT A . B 2 HOH 6 6 6 HOH WAT A . B 2 HOH 7 7 7 HOH WAT A . B 2 HOH 8 8 8 HOH WAT A . B 2 HOH 9 9 9 HOH WAT A . B 2 HOH 10 10 10 HOH WAT A . B 2 HOH 11 11 11 HOH WAT A . B 2 HOH 12 12 12 HOH WAT A . B 2 HOH 13 13 13 HOH WAT A . B 2 HOH 14 14 14 HOH WAT A . B 2 HOH 15 15 15 HOH WAT A . B 2 HOH 16 16 16 HOH WAT A . B 2 HOH 17 17 17 HOH WAT A . B 2 HOH 18 18 18 HOH WAT A . B 2 HOH 19 19 19 HOH WAT A . B 2 HOH 20 20 20 HOH WAT A . B 2 HOH 21 21 21 HOH WAT A . B 2 HOH 22 22 22 HOH WAT A . B 2 HOH 23 23 23 HOH WAT A . B 2 HOH 24 24 24 HOH WAT A . B 2 HOH 25 25 25 HOH WAT A . B 2 HOH 26 26 26 HOH WAT A . B 2 HOH 27 27 27 HOH WAT A . B 2 HOH 28 28 28 HOH WAT A . B 2 HOH 29 29 29 HOH WAT A . B 2 HOH 30 30 30 HOH WAT A . B 2 HOH 31 31 31 HOH WAT A . B 2 HOH 32 32 32 HOH WAT A . B 2 HOH 33 33 33 HOH WAT A . B 2 HOH 34 34 34 HOH WAT A . B 2 HOH 35 35 35 HOH WAT A . B 2 HOH 36 36 36 HOH WAT A . B 2 HOH 37 37 37 HOH WAT A . B 2 HOH 38 38 38 HOH WAT A . B 2 HOH 39 39 39 HOH WAT A . B 2 HOH 40 40 40 HOH WAT A . B 2 HOH 41 41 41 HOH WAT A . B 2 HOH 42 42 42 HOH WAT A . B 2 HOH 43 43 43 HOH WAT A . B 2 HOH 44 44 44 HOH WAT A . B 2 HOH 45 45 45 HOH WAT A . B 2 HOH 46 46 46 HOH WAT A . B 2 HOH 47 47 47 HOH WAT A . B 2 HOH 48 48 48 HOH WAT A . B 2 HOH 49 49 49 HOH WAT A . B 2 HOH 50 50 50 HOH WAT A . B 2 HOH 51 51 51 HOH WAT A . B 2 HOH 52 52 52 HOH WAT A . B 2 HOH 53 53 53 HOH WAT A . B 2 HOH 54 54 54 HOH WAT A . B 2 HOH 55 55 55 HOH WAT A . B 2 HOH 56 56 56 HOH WAT A . B 2 HOH 57 57 57 HOH WAT A . B 2 HOH 58 58 58 HOH WAT A . B 2 HOH 59 59 59 HOH WAT A . B 2 HOH 60 60 60 HOH WAT A . B 2 HOH 61 61 61 HOH WAT A . B 2 HOH 62 62 62 HOH WAT A . B 2 HOH 63 63 63 HOH WAT A . B 2 HOH 64 64 64 HOH WAT A . B 2 HOH 65 65 65 HOH WAT A . B 2 HOH 66 66 66 HOH WAT A . B 2 HOH 67 67 67 HOH WAT A . #