data_3RA0 # _entry.id 3RA0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RA0 pdb_00003ra0 10.2210/pdb3ra0/pdb NDB NA1040 ? ? RCSB RCSB064676 ? ? WWPDB D_1000064676 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R9Y 'StWhy2 K67A (form I)' unspecified PDB 3R9Z 'StWhy2 K67A (form II)' unspecified PDB 3N1H 'Same protein without K67A mutation' unspecified PDB 3N1I 'Same protein without K67A mutation' unspecified PDB 3N1J 'Same protein without K67A mutation' unspecified PDB 3N1K 'Same protein without K67A mutation' unspecified PDB 3N1L 'Same protein without K67A mutation' unspecified PDB 1L3A 'Paralogue protein' unspecified # _pdbx_database_status.entry_id 3RA0 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cappadocia, L.' 1 'Brisson, N.' 2 'Sygusch, J.' 3 # _citation.id primary _citation.title ;A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 258 _citation.page_last 269 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21911368 _citation.pdbx_database_id_DOI 10.1093/nar/gkr740 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cappadocia, L.' 1 ? primary 'Parent, J.S.' 2 ? primary 'Zampini, E.' 3 ? primary 'Lepage, E.' 4 ? primary 'Sygusch, J.' 5 ? primary 'Brisson, N.' 6 ? # _cell.length_a 166.465 _cell.length_b 166.465 _cell.length_c 166.465 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3RA0 _cell.pdbx_unique_axis ? _cell.Z_PDB 96 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'F 4 3 2' _symmetry.entry_id 3RA0 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 209 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Why2 protein' 19942.613 1 ? K67A 'Residues 48-216' ? 2 polymer syn 'DNA 32-mer dT32' 9689.213 1 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; ;MADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; A ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) ; TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 ALA n 1 5 GLY n 1 6 LYS n 1 7 ARG n 1 8 GLU n 1 9 GLY n 1 10 ARG n 1 11 VAL n 1 12 PHE n 1 13 ALA n 1 14 PRO n 1 15 TYR n 1 16 SER n 1 17 VAL n 1 18 PHE n 1 19 LYS n 1 20 GLY n 1 21 ALA n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 SER n 1 26 ALA n 1 27 GLU n 1 28 PRO n 1 29 ARG n 1 30 LEU n 1 31 PRO n 1 32 THR n 1 33 PHE n 1 34 ASN n 1 35 ARG n 1 36 LEU n 1 37 ASP n 1 38 SER n 1 39 GLY n 1 40 GLY n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 ASN n 1 45 ARG n 1 46 ARG n 1 47 GLY n 1 48 VAL n 1 49 ILE n 1 50 MET n 1 51 LEU n 1 52 THR n 1 53 PHE n 1 54 TRP n 1 55 PRO n 1 56 SER n 1 57 VAL n 1 58 GLY n 1 59 GLU n 1 60 ARG n 1 61 LYS n 1 62 TYR n 1 63 ASP n 1 64 TRP n 1 65 GLU n 1 66 LYS n 1 67 ARG n 1 68 GLN n 1 69 LEU n 1 70 PHE n 1 71 ALA n 1 72 LEU n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 GLU n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 LEU n 1 81 ILE n 1 82 SER n 1 83 MET n 1 84 GLY n 1 85 THR n 1 86 ARG n 1 87 ASP n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 PHE n 1 92 PHE n 1 93 HIS n 1 94 ASP n 1 95 PRO n 1 96 SER n 1 97 MET n 1 98 LEU n 1 99 SER n 1 100 SER n 1 101 ASN n 1 102 ALA n 1 103 GLY n 1 104 GLN n 1 105 VAL n 1 106 ARG n 1 107 LYS n 1 108 SER n 1 109 LEU n 1 110 SER n 1 111 ILE n 1 112 LYS n 1 113 PRO n 1 114 ASN n 1 115 ALA n 1 116 ASP n 1 117 GLY n 1 118 SER n 1 119 GLY n 1 120 TYR n 1 121 PHE n 1 122 ILE n 1 123 SER n 1 124 LEU n 1 125 SER n 1 126 VAL n 1 127 VAL n 1 128 ASN n 1 129 ASN n 1 130 ASN n 1 131 LEU n 1 132 LYS n 1 133 THR n 1 134 ASN n 1 135 ASP n 1 136 ARG n 1 137 PHE n 1 138 THR n 1 139 VAL n 1 140 PRO n 1 141 VAL n 1 142 THR n 1 143 THR n 1 144 ALA n 1 145 GLU n 1 146 PHE n 1 147 ALA n 1 148 VAL n 1 149 MET n 1 150 ARG n 1 151 THR n 1 152 ALA n 1 153 PHE n 1 154 SER n 1 155 PHE n 1 156 ALA n 1 157 LEU n 1 158 PRO n 1 159 HIS n 1 160 ILE n 1 161 MET n 1 162 GLY n 1 163 TRP n 1 164 ASP n 1 165 ARG n 1 166 PHE n 1 167 THR n 1 168 ASN n 1 169 ARG n 1 170 PRO n 1 171 LEU n 1 172 GLU n 1 173 HIS n 1 174 HIS n 1 175 HIS n 1 176 HIS n 1 177 HIS n 1 178 HIS n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DT n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DT n 2 19 DT n 2 20 DT n 2 21 DT n 2 22 DT n 2 23 DT n 2 24 DT n 2 25 DT n 2 26 DT n 2 27 DT n 2 28 DT n 2 29 DT n 2 30 DT n 2 31 DT n 2 32 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name potatoes _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene StWhy2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain kennebec _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Solanum tuberosum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4113 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP D9J034_SOLTU D9J034 1 ;ADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIM GWDRFTNRP ; 48 ? 2 PDB 3RA0 3RA0 2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RA0 A 2 ? 170 ? D9J034 48 ? 216 ? 48 216 2 2 3RA0 B 1 ? 32 ? 3RA0 1 ? 32 ? 1 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RA0 MET A 1 ? UNP D9J034 ? ? 'initiating methionine' 47 1 1 3RA0 ALA A 21 ? UNP D9J034 LYS 67 'engineered mutation' 67 2 1 3RA0 LEU A 171 ? UNP D9J034 ? ? 'expression tag' 217 3 1 3RA0 GLU A 172 ? UNP D9J034 ? ? 'expression tag' 218 4 1 3RA0 HIS A 173 ? UNP D9J034 ? ? 'expression tag' 219 5 1 3RA0 HIS A 174 ? UNP D9J034 ? ? 'expression tag' 220 6 1 3RA0 HIS A 175 ? UNP D9J034 ? ? 'expression tag' 221 7 1 3RA0 HIS A 176 ? UNP D9J034 ? ? 'expression tag' 222 8 1 3RA0 HIS A 177 ? UNP D9J034 ? ? 'expression tag' 223 9 1 3RA0 HIS A 178 ? UNP D9J034 ? ? 'expression tag' 224 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3RA0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '100mM Tris pH8.0, 15% PEG6000, 1200mM LiCl, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-08-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 1.08 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3RA0 _reflns.B_iso_Wilson_estimate 67.510 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.45 _reflns.d_resolution_low 50 _reflns.number_all 7712 _reflns.number_obs 7685 _reflns.percent_possible_obs 99.65 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 24.5 _reflns.pdbx_redundancy 17.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3RA0 _refine.ls_d_res_high 2.4510 _refine.ls_d_res_low 29.4270 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.7700 _refine.ls_number_reflns_obs 7540 _refine.ls_number_reflns_all 7712 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2514 _refine.ls_R_factor_R_work 0.2498 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2673 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 7.8900 _refine.ls_number_reflns_R_free 595 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 68.9694 _refine.solvent_model_param_bsol 57.8010 _refine.solvent_model_param_ksol 0.3280 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] -0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4000 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.6100 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB 3N1J' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7179 _refine.B_iso_max 109.490 _refine.B_iso_min 45.410 _refine.occupancy_max 1.000 _refine.occupancy_min 0.740 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1262 _refine_hist.pdbx_number_atoms_nucleic_acid 180 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1472 _refine_hist.d_res_high 2.4510 _refine_hist.d_res_low 29.4270 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1491 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2052 0.705 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 225 0.040 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 236 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 557 16.718 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.4512 2.6977 4 93.0000 1590 . 0.3724 0.4157 . 132 . 1722 . . 'X-RAY DIFFRACTION' 2.6977 3.0877 4 98.0000 1733 . 0.3104 0.4117 . 123 . 1856 . . 'X-RAY DIFFRACTION' 3.0877 3.8888 4 100.0000 1735 . 0.2402 0.2733 . 170 . 1905 . . 'X-RAY DIFFRACTION' 3.8888 29.4292 4 100.0000 1887 . 0.2296 0.2314 . 170 . 2057 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3RA0 _struct.title 'Crystal Structure of a StWhy2 K67A-dT32 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RA0 _struct_keywords.text ;StWhy2, single-stranded DNA binding protein, Plant, Potato, Whirly, protein-DNA complex, Mitochondria, DNA BINDING PROTEIN-DNA complex ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ;Authors state that the biological unit is a tetramer protein plus a 32-mer DNA molecule, as indicated as pentamer in remark 350. Please refer to remark 999 for more details on the sequences specificity of this crystal structure. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 63 ? ARG A 67 ? ASP A 109 ARG A 113 5 ? 5 HELX_P HELX_P2 2 SER A 73 ? SER A 82 ? SER A 119 SER A 128 1 ? 10 HELX_P HELX_P3 3 THR A 142 ? MET A 161 ? THR A 188 MET A 207 1 ? 20 HELX_P HELX_P4 4 GLY A 162 ? PHE A 166 ? GLY A 208 PHE A 212 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 15 ? PHE A 18 ? TYR A 61 PHE A 64 A 2 ALA A 22 ? ARG A 29 ? ALA A 68 ARG A 75 A 3 VAL A 48 ? PRO A 55 ? VAL A 94 PRO A 101 A 4 GLN A 68 ? LEU A 72 ? GLN A 114 LEU A 118 B 1 PHE A 33 ? ARG A 35 ? PHE A 79 ARG A 81 B 2 VAL A 41 ? LEU A 43 ? VAL A 87 LEU A 89 C 1 SER A 89 ? HIS A 93 ? SER A 135 HIS A 139 C 2 VAL A 105 ? PRO A 113 ? VAL A 151 PRO A 159 C 3 TYR A 120 ? ASN A 128 ? TYR A 166 ASN A 174 C 4 THR A 133 ? VAL A 141 ? THR A 179 VAL A 187 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 17 ? N VAL A 63 O LEU A 24 ? O LEU A 70 A 2 3 N ARG A 29 ? N ARG A 75 O VAL A 48 ? O VAL A 94 A 3 4 N LEU A 51 ? N LEU A 97 O PHE A 70 ? O PHE A 116 B 1 2 N ASN A 34 ? N ASN A 80 O LYS A 42 ? O LYS A 88 C 1 2 N HIS A 93 ? N HIS A 139 O LYS A 107 ? O LYS A 153 C 2 3 N LYS A 112 ? N LYS A 158 O PHE A 121 ? O PHE A 167 C 3 4 N VAL A 126 ? N VAL A 172 O ASP A 135 ? O ASP A 181 # _atom_sites.entry_id 3RA0 _atom_sites.fract_transf_matrix[1][1] 0.006007 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006007 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006007 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 47 ? ? ? A . n A 1 2 ALA 2 48 ? ? ? A . n A 1 3 ASP 3 49 ? ? ? A . n A 1 4 ALA 4 50 ? ? ? A . n A 1 5 GLY 5 51 ? ? ? A . n A 1 6 LYS 6 52 ? ? ? A . n A 1 7 ARG 7 53 ? ? ? A . n A 1 8 GLU 8 54 ? ? ? A . n A 1 9 GLY 9 55 55 GLY GLY A . n A 1 10 ARG 10 56 56 ARG ARG A . n A 1 11 VAL 11 57 57 VAL VAL A . n A 1 12 PHE 12 58 58 PHE PHE A . n A 1 13 ALA 13 59 59 ALA ALA A . n A 1 14 PRO 14 60 60 PRO PRO A . n A 1 15 TYR 15 61 61 TYR TYR A . n A 1 16 SER 16 62 62 SER SER A . n A 1 17 VAL 17 63 63 VAL VAL A . n A 1 18 PHE 18 64 64 PHE PHE A . n A 1 19 LYS 19 65 65 LYS LYS A . n A 1 20 GLY 20 66 66 GLY GLY A . n A 1 21 ALA 21 67 67 ALA ALA A . n A 1 22 ALA 22 68 68 ALA ALA A . n A 1 23 ALA 23 69 69 ALA ALA A . n A 1 24 LEU 24 70 70 LEU LEU A . n A 1 25 SER 25 71 71 SER SER A . n A 1 26 ALA 26 72 72 ALA ALA A . n A 1 27 GLU 27 73 73 GLU GLU A . n A 1 28 PRO 28 74 74 PRO PRO A . n A 1 29 ARG 29 75 75 ARG ARG A . n A 1 30 LEU 30 76 76 LEU LEU A . n A 1 31 PRO 31 77 77 PRO PRO A . n A 1 32 THR 32 78 78 THR THR A . n A 1 33 PHE 33 79 79 PHE PHE A . n A 1 34 ASN 34 80 80 ASN ASN A . n A 1 35 ARG 35 81 81 ARG ARG A . n A 1 36 LEU 36 82 82 LEU LEU A . n A 1 37 ASP 37 83 83 ASP ASP A . n A 1 38 SER 38 84 84 SER SER A . n A 1 39 GLY 39 85 85 GLY GLY A . n A 1 40 GLY 40 86 86 GLY GLY A . n A 1 41 VAL 41 87 87 VAL VAL A . n A 1 42 LYS 42 88 88 LYS LYS A . n A 1 43 LEU 43 89 89 LEU LEU A . n A 1 44 ASN 44 90 90 ASN ASN A . n A 1 45 ARG 45 91 91 ARG ARG A . n A 1 46 ARG 46 92 92 ARG ARG A . n A 1 47 GLY 47 93 93 GLY GLY A . n A 1 48 VAL 48 94 94 VAL VAL A . n A 1 49 ILE 49 95 95 ILE ILE A . n A 1 50 MET 50 96 96 MET MET A . n A 1 51 LEU 51 97 97 LEU LEU A . n A 1 52 THR 52 98 98 THR THR A . n A 1 53 PHE 53 99 99 PHE PHE A . n A 1 54 TRP 54 100 100 TRP TRP A . n A 1 55 PRO 55 101 101 PRO PRO A . n A 1 56 SER 56 102 102 SER SER A . n A 1 57 VAL 57 103 103 VAL VAL A . n A 1 58 GLY 58 104 104 GLY GLY A . n A 1 59 GLU 59 105 105 GLU GLU A . n A 1 60 ARG 60 106 106 ARG ARG A . n A 1 61 LYS 61 107 107 LYS LYS A . n A 1 62 TYR 62 108 108 TYR TYR A . n A 1 63 ASP 63 109 109 ASP ASP A . n A 1 64 TRP 64 110 110 TRP TRP A . n A 1 65 GLU 65 111 111 GLU GLU A . n A 1 66 LYS 66 112 112 LYS LYS A . n A 1 67 ARG 67 113 113 ARG ARG A . n A 1 68 GLN 68 114 114 GLN GLN A . n A 1 69 LEU 69 115 115 LEU LEU A . n A 1 70 PHE 70 116 116 PHE PHE A . n A 1 71 ALA 71 117 117 ALA ALA A . n A 1 72 LEU 72 118 118 LEU LEU A . n A 1 73 SER 73 119 119 SER SER A . n A 1 74 ALA 74 120 120 ALA ALA A . n A 1 75 THR 75 121 121 THR THR A . n A 1 76 GLU 76 122 122 GLU GLU A . n A 1 77 VAL 77 123 123 VAL VAL A . n A 1 78 GLY 78 124 124 GLY GLY A . n A 1 79 SER 79 125 125 SER SER A . n A 1 80 LEU 80 126 126 LEU LEU A . n A 1 81 ILE 81 127 127 ILE ILE A . n A 1 82 SER 82 128 128 SER SER A . n A 1 83 MET 83 129 129 MET MET A . n A 1 84 GLY 84 130 130 GLY GLY A . n A 1 85 THR 85 131 131 THR THR A . n A 1 86 ARG 86 132 132 ARG ARG A . n A 1 87 ASP 87 133 133 ASP ASP A . n A 1 88 SER 88 134 134 SER SER A . n A 1 89 SER 89 135 135 SER SER A . n A 1 90 GLU 90 136 136 GLU GLU A . n A 1 91 PHE 91 137 137 PHE PHE A . n A 1 92 PHE 92 138 138 PHE PHE A . n A 1 93 HIS 93 139 139 HIS HIS A . n A 1 94 ASP 94 140 140 ASP ASP A . n A 1 95 PRO 95 141 141 PRO PRO A . n A 1 96 SER 96 142 142 SER SER A . n A 1 97 MET 97 143 143 MET MET A . n A 1 98 LEU 98 144 144 LEU LEU A . n A 1 99 SER 99 145 145 SER SER A . n A 1 100 SER 100 146 146 SER SER A . n A 1 101 ASN 101 147 147 ASN ASN A . n A 1 102 ALA 102 148 148 ALA ALA A . n A 1 103 GLY 103 149 149 GLY GLY A . n A 1 104 GLN 104 150 150 GLN GLN A . n A 1 105 VAL 105 151 151 VAL VAL A . n A 1 106 ARG 106 152 152 ARG ARG A . n A 1 107 LYS 107 153 153 LYS LYS A . n A 1 108 SER 108 154 154 SER SER A . n A 1 109 LEU 109 155 155 LEU LEU A . n A 1 110 SER 110 156 156 SER SER A . n A 1 111 ILE 111 157 157 ILE ILE A . n A 1 112 LYS 112 158 158 LYS LYS A . n A 1 113 PRO 113 159 159 PRO PRO A . n A 1 114 ASN 114 160 160 ASN ASN A . n A 1 115 ALA 115 161 161 ALA ALA A . n A 1 116 ASP 116 162 162 ASP ASP A . n A 1 117 GLY 117 163 163 GLY GLY A . n A 1 118 SER 118 164 164 SER SER A . n A 1 119 GLY 119 165 165 GLY GLY A . n A 1 120 TYR 120 166 166 TYR TYR A . n A 1 121 PHE 121 167 167 PHE PHE A . n A 1 122 ILE 122 168 168 ILE ILE A . n A 1 123 SER 123 169 169 SER SER A . n A 1 124 LEU 124 170 170 LEU LEU A . n A 1 125 SER 125 171 171 SER SER A . n A 1 126 VAL 126 172 172 VAL VAL A . n A 1 127 VAL 127 173 173 VAL VAL A . n A 1 128 ASN 128 174 174 ASN ASN A . n A 1 129 ASN 129 175 175 ASN ASN A . n A 1 130 ASN 130 176 176 ASN ASN A . n A 1 131 LEU 131 177 177 LEU LEU A . n A 1 132 LYS 132 178 178 LYS LYS A . n A 1 133 THR 133 179 179 THR THR A . n A 1 134 ASN 134 180 180 ASN ASN A . n A 1 135 ASP 135 181 181 ASP ASP A . n A 1 136 ARG 136 182 182 ARG ARG A . n A 1 137 PHE 137 183 183 PHE PHE A . n A 1 138 THR 138 184 184 THR THR A . n A 1 139 VAL 139 185 185 VAL VAL A . n A 1 140 PRO 140 186 186 PRO PRO A . n A 1 141 VAL 141 187 187 VAL VAL A . n A 1 142 THR 142 188 188 THR THR A . n A 1 143 THR 143 189 189 THR THR A . n A 1 144 ALA 144 190 190 ALA ALA A . n A 1 145 GLU 145 191 191 GLU GLU A . n A 1 146 PHE 146 192 192 PHE PHE A . n A 1 147 ALA 147 193 193 ALA ALA A . n A 1 148 VAL 148 194 194 VAL VAL A . n A 1 149 MET 149 195 195 MET MET A . n A 1 150 ARG 150 196 196 ARG ARG A . n A 1 151 THR 151 197 197 THR THR A . n A 1 152 ALA 152 198 198 ALA ALA A . n A 1 153 PHE 153 199 199 PHE PHE A . n A 1 154 SER 154 200 200 SER SER A . n A 1 155 PHE 155 201 201 PHE PHE A . n A 1 156 ALA 156 202 202 ALA ALA A . n A 1 157 LEU 157 203 203 LEU LEU A . n A 1 158 PRO 158 204 204 PRO PRO A . n A 1 159 HIS 159 205 205 HIS HIS A . n A 1 160 ILE 160 206 206 ILE ILE A . n A 1 161 MET 161 207 207 MET MET A . n A 1 162 GLY 162 208 208 GLY GLY A . n A 1 163 TRP 163 209 209 TRP TRP A . n A 1 164 ASP 164 210 210 ASP ASP A . n A 1 165 ARG 165 211 211 ARG ARG A . n A 1 166 PHE 166 212 212 PHE PHE A . n A 1 167 THR 167 213 213 THR THR A . n A 1 168 ASN 168 214 214 ASN ASN A . n A 1 169 ARG 169 215 215 ARG ARG A . n A 1 170 PRO 170 216 ? ? ? A . n A 1 171 LEU 171 217 ? ? ? A . n A 1 172 GLU 172 218 ? ? ? A . n A 1 173 HIS 173 219 ? ? ? A . n A 1 174 HIS 174 220 ? ? ? A . n A 1 175 HIS 175 221 ? ? ? A . n A 1 176 HIS 176 222 ? ? ? A . n A 1 177 HIS 177 223 ? ? ? A . n A 1 178 HIS 178 224 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DT 10 10 ? ? ? B . n B 2 11 DT 11 11 ? ? ? B . n B 2 12 DT 12 12 ? ? ? B . n B 2 13 DT 13 13 ? ? ? B . n B 2 14 DT 14 14 ? ? ? B . n B 2 15 DT 15 15 ? ? ? B . n B 2 16 DT 16 16 ? ? ? B . n B 2 17 DT 17 17 ? ? ? B . n B 2 18 DT 18 18 ? ? ? B . n B 2 19 DT 19 19 ? ? ? B . n B 2 20 DT 20 20 ? ? ? B . n B 2 21 DT 21 21 ? ? ? B . n B 2 22 DT 22 22 ? ? ? B . n B 2 23 DT 23 23 ? ? ? B . n B 2 24 DT 24 24 ? ? ? B . n B 2 25 DT 25 25 ? ? ? B . n B 2 26 DT 26 26 ? ? ? B . n B 2 27 DT 27 27 ? ? ? B . n B 2 28 DT 28 28 ? ? ? B . n B 2 29 DT 29 29 ? ? ? B . n B 2 30 DT 30 30 ? ? ? B . n B 2 31 DT 31 31 ? ? ? B . n B 2 32 DT 32 32 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 6 6 HOH HOH A . C 3 HOH 5 7 7 HOH HOH A . C 3 HOH 6 8 8 HOH HOH A . C 3 HOH 7 9 9 HOH HOH A . C 3 HOH 8 11 11 HOH HOH A . C 3 HOH 9 12 12 HOH HOH A . C 3 HOH 10 13 13 HOH HOH A . C 3 HOH 11 14 14 HOH HOH A . C 3 HOH 12 15 15 HOH HOH A . C 3 HOH 13 16 16 HOH HOH A . C 3 HOH 14 17 17 HOH HOH A . C 3 HOH 15 18 18 HOH HOH A . C 3 HOH 16 19 19 HOH HOH A . C 3 HOH 17 20 20 HOH HOH A . C 3 HOH 18 21 21 HOH HOH A . C 3 HOH 19 22 22 HOH HOH A . C 3 HOH 20 23 23 HOH HOH A . C 3 HOH 21 24 24 HOH HOH A . C 3 HOH 22 26 26 HOH HOH A . C 3 HOH 23 27 27 HOH HOH A . C 3 HOH 24 29 29 HOH HOH A . C 3 HOH 25 30 30 HOH HOH A . C 3 HOH 26 31 31 HOH HOH A . C 3 HOH 27 225 4 HOH HOH A . D 3 HOH 1 33 25 HOH HOH B . D 3 HOH 2 34 5 HOH HOH B . D 3 HOH 3 35 28 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA octameric 8 2 author_and_software_defined_assembly PISA 48-meric 48 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D 2 1,5,2,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,3,23,4,24 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16820 ? 1 MORE -159 ? 1 'SSA (A^2)' 33800 ? 2 'ABSA (A^2)' 128320 ? 2 MORE -982 ? 2 'SSA (A^2)' 175390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -166.4650000000 3 'crystal symmetry operation' 21_655 z+1,y,-x 0.0000000000 0.0000000000 1.0000000000 166.4650000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 23_554 -z,y,x-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -166.4650000000 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_564 x,-y+1,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 -1.0000000000 -166.4650000000 7 'crystal symmetry operation' 5_654 z+1,x,y-1 0.0000000000 0.0000000000 1.0000000000 166.4650000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -166.4650000000 8 'crystal symmetry operation' 6_665 z+1,-x+1,-y 0.0000000000 0.0000000000 1.0000000000 166.4650000000 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 9 'crystal symmetry operation' 7_564 -z,-x+1,y-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 1.0000000000 0.0000000000 -166.4650000000 10 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 9_564 y,z+1,x-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 166.4650000000 1.0000000000 0.0000000000 0.0000000000 -166.4650000000 12 'crystal symmetry operation' 10_665 -y+1,z+1,-x 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 1.0000000000 166.4650000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 13 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 14 'crystal symmetry operation' 12_654 -y+1,-z,x-1 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -166.4650000000 15 'crystal symmetry operation' 13_554 y,x,-z-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -166.4650000000 16 'crystal symmetry operation' 14_664 -y+1,-x+1,-z-1 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 -1.0000000000 -166.4650000000 17 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 18 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19 'crystal symmetry operation' 17_565 x,z+1,-y 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 166.4650000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 20 'crystal symmetry operation' 18_664 -x+1,z+1,y-1 -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 1.0000000000 166.4650000000 0.0000000000 1.0000000000 0.0000000000 -166.4650000000 21 'crystal symmetry operation' 19_655 -x+1,-z,-y -1.0000000000 0.0000000000 0.0000000000 166.4650000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 22 'crystal symmetry operation' 20_554 x,-z,y-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -166.4650000000 23 'crystal symmetry operation' 22_664 z+1,-y+1,x-1 0.0000000000 0.0000000000 1.0000000000 166.4650000000 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 1.0000000000 0.0000000000 0.0000000000 -166.4650000000 24 'crystal symmetry operation' 24_565 -z,-y+1,-x 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 166.4650000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-28 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3RA0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE OF THE CRYSTALLIZED DNA IS A 32-MER OLIGONUCLEOTIDE WITH SEQUENCE TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT. ONLY 9 RESIDUES WERE MODELED IN THE COORDINATES OF THE ASYMMETRIC UNIT. ACCORDING TO THE AUTHORS, THE 32-MER DNA BINDS A TETRAMER THAT INCLUDE FOUR MONOMERS OF FOUR ASYMMETRIC UNITS; THE STWHY2-DNA BINDING IS NOT SEQUENCE SPECIFIC THUS EACH TETRAMERIC PROTEIN BINDS A 32-MER DNA IN DIFFERENT SEQUENCE REGISTERS; AS A RESULT ONLY THREE OF THE FOUR DNA-BINDING SITES OF EACH TETRAMER WOULD BE PHYSICALLY OCCUPIED BY THE DNA. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 90 ? ? -105.52 -82.34 2 1 GLU A 105 ? ? -47.53 106.77 3 1 LYS A 107 ? ? -160.92 113.83 4 1 LYS A 112 ? ? -96.58 41.80 5 1 SER A 142 ? ? -109.42 48.53 6 1 ASN A 147 ? ? -115.19 62.38 7 1 SER A 164 ? ? -79.24 43.26 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 47 ? A MET 1 2 1 Y 1 A ALA 48 ? A ALA 2 3 1 Y 1 A ASP 49 ? A ASP 3 4 1 Y 1 A ALA 50 ? A ALA 4 5 1 Y 1 A GLY 51 ? A GLY 5 6 1 Y 1 A LYS 52 ? A LYS 6 7 1 Y 1 A ARG 53 ? A ARG 7 8 1 Y 1 A GLU 54 ? A GLU 8 9 1 Y 1 A PRO 216 ? A PRO 170 10 1 Y 1 A LEU 217 ? A LEU 171 11 1 Y 1 A GLU 218 ? A GLU 172 12 1 Y 1 A HIS 219 ? A HIS 173 13 1 Y 1 A HIS 220 ? A HIS 174 14 1 Y 1 A HIS 221 ? A HIS 175 15 1 Y 1 A HIS 222 ? A HIS 176 16 1 Y 1 A HIS 223 ? A HIS 177 17 1 Y 1 A HIS 224 ? A HIS 178 18 1 Y 1 B DT 10 ? B DT 10 19 1 Y 1 B DT 11 ? B DT 11 20 1 Y 1 B DT 12 ? B DT 12 21 1 Y 1 B DT 13 ? B DT 13 22 1 Y 1 B DT 14 ? B DT 14 23 1 Y 1 B DT 15 ? B DT 15 24 1 Y 1 B DT 16 ? B DT 16 25 1 Y 1 B DT 17 ? B DT 17 26 1 Y 1 B DT 18 ? B DT 18 27 1 Y 1 B DT 19 ? B DT 19 28 1 Y 1 B DT 20 ? B DT 20 29 1 Y 1 B DT 21 ? B DT 21 30 1 Y 1 B DT 22 ? B DT 22 31 1 Y 1 B DT 23 ? B DT 23 32 1 Y 1 B DT 24 ? B DT 24 33 1 Y 1 B DT 25 ? B DT 25 34 1 Y 1 B DT 26 ? B DT 26 35 1 Y 1 B DT 27 ? B DT 27 36 1 Y 1 B DT 28 ? B DT 28 37 1 Y 1 B DT 29 ? B DT 29 38 1 Y 1 B DT 30 ? B DT 30 39 1 Y 1 B DT 31 ? B DT 31 40 1 Y 1 B DT 32 ? B DT 32 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 GLN N N N N 110 GLN CA C N S 111 GLN C C N N 112 GLN O O N N 113 GLN CB C N N 114 GLN CG C N N 115 GLN CD C N N 116 GLN OE1 O N N 117 GLN NE2 N N N 118 GLN OXT O N N 119 GLN H H N N 120 GLN H2 H N N 121 GLN HA H N N 122 GLN HB2 H N N 123 GLN HB3 H N N 124 GLN HG2 H N N 125 GLN HG3 H N N 126 GLN HE21 H N N 127 GLN HE22 H N N 128 GLN HXT H N N 129 GLU N N N N 130 GLU CA C N S 131 GLU C C N N 132 GLU O O N N 133 GLU CB C N N 134 GLU CG C N N 135 GLU CD C N N 136 GLU OE1 O N N 137 GLU OE2 O N N 138 GLU OXT O N N 139 GLU H H N N 140 GLU H2 H N N 141 GLU HA H N N 142 GLU HB2 H N N 143 GLU HB3 H N N 144 GLU HG2 H N N 145 GLU HG3 H N N 146 GLU HE2 H N N 147 GLU HXT H N N 148 GLY N N N N 149 GLY CA C N N 150 GLY C C N N 151 GLY O O N N 152 GLY OXT O N N 153 GLY H H N N 154 GLY H2 H N N 155 GLY HA2 H N N 156 GLY HA3 H N N 157 GLY HXT H N N 158 HIS N N N N 159 HIS CA C N S 160 HIS C C N N 161 HIS O O N N 162 HIS CB C N N 163 HIS CG C Y N 164 HIS ND1 N Y N 165 HIS CD2 C Y N 166 HIS CE1 C Y N 167 HIS NE2 N Y N 168 HIS OXT O N N 169 HIS H H N N 170 HIS H2 H N N 171 HIS HA H N N 172 HIS HB2 H N N 173 HIS HB3 H N N 174 HIS HD1 H N N 175 HIS HD2 H N N 176 HIS HE1 H N N 177 HIS HE2 H N N 178 HIS HXT H N N 179 HOH O O N N 180 HOH H1 H N N 181 HOH H2 H N N 182 ILE N N N N 183 ILE CA C N S 184 ILE C C N N 185 ILE O O N N 186 ILE CB C N S 187 ILE CG1 C N N 188 ILE CG2 C N N 189 ILE CD1 C N N 190 ILE OXT O N N 191 ILE H H N N 192 ILE H2 H N N 193 ILE HA H N N 194 ILE HB H N N 195 ILE HG12 H N N 196 ILE HG13 H N N 197 ILE HG21 H N N 198 ILE HG22 H N N 199 ILE HG23 H N N 200 ILE HD11 H N N 201 ILE HD12 H N N 202 ILE HD13 H N N 203 ILE HXT H N N 204 LEU N N N N 205 LEU CA C N S 206 LEU C C N N 207 LEU O O N N 208 LEU CB C N N 209 LEU CG C N N 210 LEU CD1 C N N 211 LEU CD2 C N N 212 LEU OXT O N N 213 LEU H H N N 214 LEU H2 H N N 215 LEU HA H N N 216 LEU HB2 H N N 217 LEU HB3 H N N 218 LEU HG H N N 219 LEU HD11 H N N 220 LEU HD12 H N N 221 LEU HD13 H N N 222 LEU HD21 H N N 223 LEU HD22 H N N 224 LEU HD23 H N N 225 LEU HXT H N N 226 LYS N N N N 227 LYS CA C N S 228 LYS C C N N 229 LYS O O N N 230 LYS CB C N N 231 LYS CG C N N 232 LYS CD C N N 233 LYS CE C N N 234 LYS NZ N N N 235 LYS OXT O N N 236 LYS H H N N 237 LYS H2 H N N 238 LYS HA H N N 239 LYS HB2 H N N 240 LYS HB3 H N N 241 LYS HG2 H N N 242 LYS HG3 H N N 243 LYS HD2 H N N 244 LYS HD3 H N N 245 LYS HE2 H N N 246 LYS HE3 H N N 247 LYS HZ1 H N N 248 LYS HZ2 H N N 249 LYS HZ3 H N N 250 LYS HXT H N N 251 MET N N N N 252 MET CA C N S 253 MET C C N N 254 MET O O N N 255 MET CB C N N 256 MET CG C N N 257 MET SD S N N 258 MET CE C N N 259 MET OXT O N N 260 MET H H N N 261 MET H2 H N N 262 MET HA H N N 263 MET HB2 H N N 264 MET HB3 H N N 265 MET HG2 H N N 266 MET HG3 H N N 267 MET HE1 H N N 268 MET HE2 H N N 269 MET HE3 H N N 270 MET HXT H N N 271 PHE N N N N 272 PHE CA C N S 273 PHE C C N N 274 PHE O O N N 275 PHE CB C N N 276 PHE CG C Y N 277 PHE CD1 C Y N 278 PHE CD2 C Y N 279 PHE CE1 C Y N 280 PHE CE2 C Y N 281 PHE CZ C Y N 282 PHE OXT O N N 283 PHE H H N N 284 PHE H2 H N N 285 PHE HA H N N 286 PHE HB2 H N N 287 PHE HB3 H N N 288 PHE HD1 H N N 289 PHE HD2 H N N 290 PHE HE1 H N N 291 PHE HE2 H N N 292 PHE HZ H N N 293 PHE HXT H N N 294 PRO N N N N 295 PRO CA C N S 296 PRO C C N N 297 PRO O O N N 298 PRO CB C N N 299 PRO CG C N N 300 PRO CD C N N 301 PRO OXT O N N 302 PRO H H N N 303 PRO HA H N N 304 PRO HB2 H N N 305 PRO HB3 H N N 306 PRO HG2 H N N 307 PRO HG3 H N N 308 PRO HD2 H N N 309 PRO HD3 H N N 310 PRO HXT H N N 311 SER N N N N 312 SER CA C N S 313 SER C C N N 314 SER O O N N 315 SER CB C N N 316 SER OG O N N 317 SER OXT O N N 318 SER H H N N 319 SER H2 H N N 320 SER HA H N N 321 SER HB2 H N N 322 SER HB3 H N N 323 SER HG H N N 324 SER HXT H N N 325 THR N N N N 326 THR CA C N S 327 THR C C N N 328 THR O O N N 329 THR CB C N R 330 THR OG1 O N N 331 THR CG2 C N N 332 THR OXT O N N 333 THR H H N N 334 THR H2 H N N 335 THR HA H N N 336 THR HB H N N 337 THR HG1 H N N 338 THR HG21 H N N 339 THR HG22 H N N 340 THR HG23 H N N 341 THR HXT H N N 342 TRP N N N N 343 TRP CA C N S 344 TRP C C N N 345 TRP O O N N 346 TRP CB C N N 347 TRP CG C Y N 348 TRP CD1 C Y N 349 TRP CD2 C Y N 350 TRP NE1 N Y N 351 TRP CE2 C Y N 352 TRP CE3 C Y N 353 TRP CZ2 C Y N 354 TRP CZ3 C Y N 355 TRP CH2 C Y N 356 TRP OXT O N N 357 TRP H H N N 358 TRP H2 H N N 359 TRP HA H N N 360 TRP HB2 H N N 361 TRP HB3 H N N 362 TRP HD1 H N N 363 TRP HE1 H N N 364 TRP HE3 H N N 365 TRP HZ2 H N N 366 TRP HZ3 H N N 367 TRP HH2 H N N 368 TRP HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DT OP3 P sing N N 70 DT OP3 HOP3 sing N N 71 DT P OP1 doub N N 72 DT P OP2 sing N N 73 DT P "O5'" sing N N 74 DT OP2 HOP2 sing N N 75 DT "O5'" "C5'" sing N N 76 DT "C5'" "C4'" sing N N 77 DT "C5'" "H5'" sing N N 78 DT "C5'" "H5''" sing N N 79 DT "C4'" "O4'" sing N N 80 DT "C4'" "C3'" sing N N 81 DT "C4'" "H4'" sing N N 82 DT "O4'" "C1'" sing N N 83 DT "C3'" "O3'" sing N N 84 DT "C3'" "C2'" sing N N 85 DT "C3'" "H3'" sing N N 86 DT "O3'" "HO3'" sing N N 87 DT "C2'" "C1'" sing N N 88 DT "C2'" "H2'" sing N N 89 DT "C2'" "H2''" sing N N 90 DT "C1'" N1 sing N N 91 DT "C1'" "H1'" sing N N 92 DT N1 C2 sing N N 93 DT N1 C6 sing N N 94 DT C2 O2 doub N N 95 DT C2 N3 sing N N 96 DT N3 C4 sing N N 97 DT N3 H3 sing N N 98 DT C4 O4 doub N N 99 DT C4 C5 sing N N 100 DT C5 C7 sing N N 101 DT C5 C6 doub N N 102 DT C7 H71 sing N N 103 DT C7 H72 sing N N 104 DT C7 H73 sing N N 105 DT C6 H6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N1J _pdbx_initial_refinement_model.details 'PDB 3N1J' #