data_3RKQ # _entry.id 3RKQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RKQ pdb_00003rkq 10.2210/pdb3rkq/pdb NDB NA1097 ? ? RCSB RCSB065052 ? ? WWPDB D_1000065052 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-09 2 'Structure model' 1 1 2014-05-14 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RKQ _pdbx_database_status.recvd_initial_deposition_date 2011-04-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Genis, C.' 1 'Scone, P.' 2 'Kasahara, H.' 3 'Nam, H.-J.' 4 # _citation.id primary _citation.title 'Crystal structure of the human NKX2.5 homeodomain in complex with DNA target.' _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 6312 _citation.page_last 6319 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22849347 _citation.pdbx_database_id_DOI 10.1021/bi300849c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pradhan, L.' 1 ? primary 'Genis, C.' 2 ? primary 'Scone, P.' 3 ? primary 'Weinberg, E.O.' 4 ? primary 'Kasahara, H.' 5 ? primary 'Nam, H.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein Nkx-2.5' 7129.262 2 ? C193S 'Homeodomain, UNP residues 138-194' ? 2 polymer syn 'ANF-242 DNA' 5916.819 1 ? ? ? ? 3 polymer syn 'ANF-242 DNA' 5734.727 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 170 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cardiac-specific homeobox, Homeobox protein CSX, Homeobox protein NK-2 homolog E' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK GRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK A,B ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DA)(DA)(DG)(DT)(DG)(DG)(DG)(DG)(DG)(DC)(DC)(DT)(DC)(DT)(DT)(DG)(DA)' TGAAGTGGGGGCCTCTTGA C ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DA)(DG)(DA)(DG)(DG)(DC)(DC)(DC)(DC)(DC)(DA)(DC)(DT)(DT)(DC)(DA)' TCAAGAGGCCCCCACTTCA D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ARG n 1 4 LYS n 1 5 PRO n 1 6 ARG n 1 7 VAL n 1 8 LEU n 1 9 PHE n 1 10 SER n 1 11 GLN n 1 12 ALA n 1 13 GLN n 1 14 VAL n 1 15 TYR n 1 16 GLU n 1 17 LEU n 1 18 GLU n 1 19 ARG n 1 20 ARG n 1 21 PHE n 1 22 LYS n 1 23 GLN n 1 24 GLN n 1 25 ARG n 1 26 TYR n 1 27 LEU n 1 28 SER n 1 29 ALA n 1 30 PRO n 1 31 GLU n 1 32 ARG n 1 33 ASP n 1 34 GLN n 1 35 LEU n 1 36 ALA n 1 37 SER n 1 38 VAL n 1 39 LEU n 1 40 LYS n 1 41 LEU n 1 42 THR n 1 43 SER n 1 44 THR n 1 45 GLN n 1 46 VAL n 1 47 LYS n 1 48 ILE n 1 49 TRP n 1 50 PHE n 1 51 GLN n 1 52 ASN n 1 53 ARG n 1 54 ARG n 1 55 TYR n 1 56 LYS n 1 57 SER n 1 58 LYS n 2 1 DT n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DG n 2 9 DG n 2 10 DG n 2 11 DG n 2 12 DC n 2 13 DC n 2 14 DT n 2 15 DC n 2 16 DT n 2 17 DT n 2 18 DG n 2 19 DA n 3 1 DT n 3 2 DC n 3 3 DA n 3 4 DA n 3 5 DG n 3 6 DA n 3 7 DG n 3 8 DG n 3 9 DC n 3 10 DC n 3 11 DC n 3 12 DC n 3 13 DC n 3 14 DA n 3 15 DC n 3 16 DT n 3 17 DT n 3 18 DC n 3 19 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NKX2-5, CSX, NKX2.5, NKX2E' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 137 137 GLY GLY A . n A 1 2 ARG 2 138 138 ARG ARG A . n A 1 3 ARG 3 139 139 ARG ARG A . n A 1 4 LYS 4 140 140 LYS LYS A . n A 1 5 PRO 5 141 141 PRO PRO A . n A 1 6 ARG 6 142 142 ARG ARG A . n A 1 7 VAL 7 143 143 VAL VAL A . n A 1 8 LEU 8 144 144 LEU LEU A . n A 1 9 PHE 9 145 145 PHE PHE A . n A 1 10 SER 10 146 146 SER SER A . n A 1 11 GLN 11 147 147 GLN GLN A . n A 1 12 ALA 12 148 148 ALA ALA A . n A 1 13 GLN 13 149 149 GLN GLN A . n A 1 14 VAL 14 150 150 VAL VAL A . n A 1 15 TYR 15 151 151 TYR TYR A . n A 1 16 GLU 16 152 152 GLU GLU A . n A 1 17 LEU 17 153 153 LEU LEU A . n A 1 18 GLU 18 154 154 GLU GLU A . n A 1 19 ARG 19 155 155 ARG ARG A . n A 1 20 ARG 20 156 156 ARG ARG A . n A 1 21 PHE 21 157 157 PHE PHE A . n A 1 22 LYS 22 158 158 LYS LYS A . n A 1 23 GLN 23 159 159 GLN GLN A . n A 1 24 GLN 24 160 160 GLN GLN A . n A 1 25 ARG 25 161 161 ARG ARG A . n A 1 26 TYR 26 162 162 TYR TYR A . n A 1 27 LEU 27 163 163 LEU LEU A . n A 1 28 SER 28 164 164 SER SER A . n A 1 29 ALA 29 165 165 ALA ALA A . n A 1 30 PRO 30 166 166 PRO PRO A . n A 1 31 GLU 31 167 167 GLU GLU A . n A 1 32 ARG 32 168 168 ARG ARG A . n A 1 33 ASP 33 169 169 ASP ASP A . n A 1 34 GLN 34 170 170 GLN GLN A . n A 1 35 LEU 35 171 171 LEU LEU A . n A 1 36 ALA 36 172 172 ALA ALA A . n A 1 37 SER 37 173 173 SER SER A . n A 1 38 VAL 38 174 174 VAL VAL A . n A 1 39 LEU 39 175 175 LEU LEU A . n A 1 40 LYS 40 176 176 LYS LYS A . n A 1 41 LEU 41 177 177 LEU LEU A . n A 1 42 THR 42 178 178 THR THR A . n A 1 43 SER 43 179 179 SER SER A . n A 1 44 THR 44 180 180 THR THR A . n A 1 45 GLN 45 181 181 GLN GLN A . n A 1 46 VAL 46 182 182 VAL VAL A . n A 1 47 LYS 47 183 183 LYS LYS A . n A 1 48 ILE 48 184 184 ILE ILE A . n A 1 49 TRP 49 185 185 TRP TRP A . n A 1 50 PHE 50 186 186 PHE PHE A . n A 1 51 GLN 51 187 187 GLN GLN A . n A 1 52 ASN 52 188 188 ASN ASN A . n A 1 53 ARG 53 189 189 ARG ARG A . n A 1 54 ARG 54 190 190 ARG ARG A . n A 1 55 TYR 55 191 191 TYR TYR A . n A 1 56 LYS 56 192 192 LYS LYS A . n A 1 57 SER 57 193 193 SER SER A . n A 1 58 LYS 58 194 194 LYS LYS A . n B 1 1 GLY 1 137 137 GLY GLY B . n B 1 2 ARG 2 138 138 ARG ARG B . n B 1 3 ARG 3 139 139 ARG ARG B . n B 1 4 LYS 4 140 140 LYS LYS B . n B 1 5 PRO 5 141 141 PRO PRO B . n B 1 6 ARG 6 142 142 ARG ARG B . n B 1 7 VAL 7 143 143 VAL VAL B . n B 1 8 LEU 8 144 144 LEU LEU B . n B 1 9 PHE 9 145 145 PHE PHE B . n B 1 10 SER 10 146 146 SER SER B . n B 1 11 GLN 11 147 147 GLN GLN B . n B 1 12 ALA 12 148 148 ALA ALA B . n B 1 13 GLN 13 149 149 GLN GLN B . n B 1 14 VAL 14 150 150 VAL VAL B . n B 1 15 TYR 15 151 151 TYR TYR B . n B 1 16 GLU 16 152 152 GLU GLU B . n B 1 17 LEU 17 153 153 LEU LEU B . n B 1 18 GLU 18 154 154 GLU GLU B . n B 1 19 ARG 19 155 155 ARG ARG B . n B 1 20 ARG 20 156 156 ARG ARG B . n B 1 21 PHE 21 157 157 PHE PHE B . n B 1 22 LYS 22 158 158 LYS LYS B . n B 1 23 GLN 23 159 159 GLN GLN B . n B 1 24 GLN 24 160 160 GLN GLN B . n B 1 25 ARG 25 161 161 ARG ARG B . n B 1 26 TYR 26 162 162 TYR TYR B . n B 1 27 LEU 27 163 163 LEU LEU B . n B 1 28 SER 28 164 164 SER SER B . n B 1 29 ALA 29 165 165 ALA ALA B . n B 1 30 PRO 30 166 166 PRO PRO B . n B 1 31 GLU 31 167 167 GLU GLU B . n B 1 32 ARG 32 168 168 ARG ARG B . n B 1 33 ASP 33 169 169 ASP ASP B . n B 1 34 GLN 34 170 170 GLN GLN B . n B 1 35 LEU 35 171 171 LEU LEU B . n B 1 36 ALA 36 172 172 ALA ALA B . n B 1 37 SER 37 173 173 SER SER B . n B 1 38 VAL 38 174 174 VAL VAL B . n B 1 39 LEU 39 175 175 LEU LEU B . n B 1 40 LYS 40 176 176 LYS LYS B . n B 1 41 LEU 41 177 177 LEU LEU B . n B 1 42 THR 42 178 178 THR THR B . n B 1 43 SER 43 179 179 SER SER B . n B 1 44 THR 44 180 180 THR THR B . n B 1 45 GLN 45 181 181 GLN GLN B . n B 1 46 VAL 46 182 182 VAL VAL B . n B 1 47 LYS 47 183 183 LYS LYS B . n B 1 48 ILE 48 184 184 ILE ILE B . n B 1 49 TRP 49 185 185 TRP TRP B . n B 1 50 PHE 50 186 186 PHE PHE B . n B 1 51 GLN 51 187 187 GLN GLN B . n B 1 52 ASN 52 188 188 ASN ASN B . n B 1 53 ARG 53 189 189 ARG ARG B . n B 1 54 ARG 54 190 190 ARG ARG B . n B 1 55 TYR 55 191 191 TYR TYR B . n B 1 56 LYS 56 192 192 LYS LYS B . n B 1 57 SER 57 193 193 SER SER B . n B 1 58 LYS 58 194 ? ? ? B . n C 2 1 DT 1 1 1 DT THY C . n C 2 2 DG 2 2 2 DG GUA C . n C 2 3 DA 3 3 3 DA ADE C . n C 2 4 DA 4 4 4 DA ADE C . n C 2 5 DG 5 5 5 DG GUA C . n C 2 6 DT 6 6 6 DT THY C . n C 2 7 DG 7 7 7 DG GUA C . n C 2 8 DG 8 8 8 DG GUA C . n C 2 9 DG 9 9 9 DG GUA C . n C 2 10 DG 10 10 10 DG GUA C . n C 2 11 DG 11 11 11 DG GUA C . n C 2 12 DC 12 12 12 DC CYT C . n C 2 13 DC 13 13 13 DC CYT C . n C 2 14 DT 14 14 14 DT THY C . n C 2 15 DC 15 15 15 DC CYT C . n C 2 16 DT 16 16 16 DT THY C . n C 2 17 DT 17 17 17 DT THY C . n C 2 18 DG 18 18 18 DG GUA C . n C 2 19 DA 19 19 19 DA ADE C . n D 3 1 DT 1 1 1 DT THY D . n D 3 2 DC 2 2 2 DC CYT D . n D 3 3 DA 3 3 3 DA ADE D . n D 3 4 DA 4 4 4 DA ADE D . n D 3 5 DG 5 5 5 DG GUA D . n D 3 6 DA 6 6 6 DA ADE D . n D 3 7 DG 7 7 7 DG GUA D . n D 3 8 DG 8 8 8 DG GUA D . n D 3 9 DC 9 9 9 DC CYT D . n D 3 10 DC 10 10 10 DC CYT D . n D 3 11 DC 11 11 11 DC CYT D . n D 3 12 DC 12 12 12 DC CYT D . n D 3 13 DC 13 13 13 DC CYT D . n D 3 14 DA 14 14 14 DA ADE D . n D 3 15 DC 15 15 15 DC CYT D . n D 3 16 DT 16 16 16 DT THY D . n D 3 17 DT 17 17 17 DT THY D . n D 3 18 DC 18 18 18 DC CYT D . n D 3 19 DA 19 19 19 DA ADE D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG 1 1 1 MG MG B . F 5 HOH 1 1 1 HOH TIP A . F 5 HOH 2 2 2 HOH TIP A . F 5 HOH 3 4 4 HOH TIP A . F 5 HOH 4 9 9 HOH TIP A . F 5 HOH 5 16 16 HOH TIP A . F 5 HOH 6 17 17 HOH TIP A . F 5 HOH 7 20 20 HOH TIP A . F 5 HOH 8 22 12 HOH TIP A . F 5 HOH 9 24 24 HOH TIP A . F 5 HOH 10 31 31 HOH TIP A . F 5 HOH 11 38 38 HOH TIP A . F 5 HOH 12 40 40 HOH TIP A . F 5 HOH 13 46 46 HOH TIP A . F 5 HOH 14 47 47 HOH TIP A . F 5 HOH 15 48 48 HOH TIP A . F 5 HOH 16 54 54 HOH TIP A . F 5 HOH 17 59 59 HOH TIP A . F 5 HOH 18 61 61 HOH TIP A . F 5 HOH 19 62 62 HOH TIP A . F 5 HOH 20 65 65 HOH TIP A . F 5 HOH 21 67 67 HOH TIP A . F 5 HOH 22 68 68 HOH TIP A . F 5 HOH 23 78 78 HOH TIP A . F 5 HOH 24 80 80 HOH TIP A . F 5 HOH 25 85 85 HOH TIP A . F 5 HOH 26 89 89 HOH TIP A . F 5 HOH 27 90 90 HOH TIP A . F 5 HOH 28 93 93 HOH TIP A . F 5 HOH 29 99 99 HOH TIP A . F 5 HOH 30 103 103 HOH TIP A . F 5 HOH 31 121 121 HOH TIP A . F 5 HOH 32 126 126 HOH TIP A . F 5 HOH 33 134 134 HOH TIP A . F 5 HOH 34 195 138 HOH TIP A . F 5 HOH 35 196 139 HOH TIP A . F 5 HOH 36 197 150 HOH TIP A . F 5 HOH 37 198 156 HOH TIP A . F 5 HOH 38 199 157 HOH TIP A . F 5 HOH 39 200 159 HOH TIP A . F 5 HOH 40 201 160 HOH TIP A . F 5 HOH 41 202 166 HOH TIP A . F 5 HOH 42 203 168 HOH TIP A . F 5 HOH 43 204 171 HOH TIP A . F 5 HOH 44 205 172 HOH TIP A . F 5 HOH 45 206 173 HOH TIP A . F 5 HOH 46 207 181 HOH TIP A . F 5 HOH 47 208 185 HOH TIP A . F 5 HOH 48 209 192 HOH TIP A . G 5 HOH 1 6 6 HOH TIP B . G 5 HOH 2 8 8 HOH TIP B . G 5 HOH 3 10 10 HOH TIP B . G 5 HOH 4 14 14 HOH TIP B . G 5 HOH 5 15 15 HOH TIP B . G 5 HOH 6 26 26 HOH TIP B . G 5 HOH 7 27 27 HOH TIP B . G 5 HOH 8 30 30 HOH TIP B . G 5 HOH 9 33 33 HOH TIP B . G 5 HOH 10 36 36 HOH TIP B . G 5 HOH 11 37 37 HOH TIP B . G 5 HOH 12 41 41 HOH TIP B . G 5 HOH 13 44 44 HOH TIP B . G 5 HOH 14 52 52 HOH TIP B . G 5 HOH 15 55 55 HOH TIP B . G 5 HOH 16 64 64 HOH TIP B . G 5 HOH 17 66 66 HOH TIP B . G 5 HOH 18 71 71 HOH TIP B . G 5 HOH 19 73 73 HOH TIP B . G 5 HOH 20 75 75 HOH TIP B . G 5 HOH 21 82 82 HOH TIP B . G 5 HOH 22 83 83 HOH TIP B . G 5 HOH 23 84 84 HOH TIP B . G 5 HOH 24 86 86 HOH TIP B . G 5 HOH 25 94 94 HOH TIP B . G 5 HOH 26 98 98 HOH TIP B . G 5 HOH 27 100 100 HOH TIP B . G 5 HOH 28 102 102 HOH TIP B . G 5 HOH 29 105 105 HOH TIP B . G 5 HOH 30 112 112 HOH TIP B . G 5 HOH 31 115 115 HOH TIP B . G 5 HOH 32 116 116 HOH TIP B . G 5 HOH 33 122 122 HOH TIP B . G 5 HOH 34 133 133 HOH TIP B . G 5 HOH 35 195 151 HOH TIP B . G 5 HOH 36 196 196 HOH TIP B . G 5 HOH 37 197 162 HOH TIP B . G 5 HOH 38 198 175 HOH TIP B . G 5 HOH 39 199 177 HOH TIP B . G 5 HOH 40 200 182 HOH TIP B . G 5 HOH 41 201 184 HOH TIP B . G 5 HOH 42 202 187 HOH TIP B . G 5 HOH 43 203 190 HOH TIP B . H 5 HOH 1 20 7 HOH TIP C . H 5 HOH 2 21 11 HOH TIP C . H 5 HOH 3 22 18 HOH TIP C . H 5 HOH 4 23 13 HOH TIP C . H 5 HOH 5 24 19 HOH TIP C . H 5 HOH 6 32 32 HOH TIP C . H 5 HOH 7 34 34 HOH TIP C . H 5 HOH 8 42 42 HOH TIP C . H 5 HOH 9 43 43 HOH TIP C . H 5 HOH 10 45 45 HOH TIP C . H 5 HOH 11 50 50 HOH TIP C . H 5 HOH 12 51 51 HOH TIP C . H 5 HOH 13 58 58 HOH TIP C . H 5 HOH 14 72 72 HOH TIP C . H 5 HOH 15 76 76 HOH TIP C . H 5 HOH 16 87 87 HOH TIP C . H 5 HOH 17 92 92 HOH TIP C . H 5 HOH 18 101 101 HOH TIP C . H 5 HOH 19 113 113 HOH TIP C . H 5 HOH 20 120 120 HOH TIP C . H 5 HOH 21 124 124 HOH TIP C . H 5 HOH 22 131 131 HOH TIP C . H 5 HOH 23 140 140 HOH TIP C . H 5 HOH 24 146 146 HOH TIP C . H 5 HOH 25 147 147 HOH TIP C . H 5 HOH 26 148 148 HOH TIP C . H 5 HOH 27 149 149 HOH TIP C . H 5 HOH 28 154 154 HOH TIP C . H 5 HOH 29 161 161 HOH TIP C . H 5 HOH 30 167 167 HOH TIP C . H 5 HOH 31 170 170 HOH TIP C . H 5 HOH 32 174 174 HOH TIP C . H 5 HOH 33 176 176 HOH TIP C . H 5 HOH 34 178 178 HOH TIP C . H 5 HOH 35 179 179 HOH TIP C . H 5 HOH 36 180 180 HOH TIP C . H 5 HOH 37 194 194 HOH TIP C . H 5 HOH 38 195 195 HOH TIP C . I 5 HOH 1 20 3 HOH TIP D . I 5 HOH 2 21 21 HOH TIP D . I 5 HOH 3 22 5 HOH TIP D . I 5 HOH 4 23 23 HOH TIP D . I 5 HOH 5 25 25 HOH TIP D . I 5 HOH 6 28 28 HOH TIP D . I 5 HOH 7 29 29 HOH TIP D . I 5 HOH 8 35 35 HOH TIP D . I 5 HOH 9 39 39 HOH TIP D . I 5 HOH 10 49 49 HOH TIP D . I 5 HOH 11 53 53 HOH TIP D . I 5 HOH 12 57 57 HOH TIP D . I 5 HOH 13 70 70 HOH TIP D . I 5 HOH 14 88 88 HOH TIP D . I 5 HOH 15 95 95 HOH TIP D . I 5 HOH 16 96 96 HOH TIP D . I 5 HOH 17 104 104 HOH TIP D . I 5 HOH 18 106 106 HOH TIP D . I 5 HOH 19 107 107 HOH TIP D . I 5 HOH 20 108 108 HOH TIP D . I 5 HOH 21 110 110 HOH TIP D . I 5 HOH 22 111 111 HOH TIP D . I 5 HOH 23 114 114 HOH TIP D . I 5 HOH 24 118 118 HOH TIP D . I 5 HOH 25 119 119 HOH TIP D . I 5 HOH 26 128 128 HOH TIP D . I 5 HOH 27 130 130 HOH TIP D . I 5 HOH 28 136 136 HOH TIP D . I 5 HOH 29 141 141 HOH TIP D . I 5 HOH 30 153 153 HOH TIP D . I 5 HOH 31 155 155 HOH TIP D . I 5 HOH 32 165 165 HOH TIP D . I 5 HOH 33 169 169 HOH TIP D . I 5 HOH 34 183 183 HOH TIP D . I 5 HOH 35 186 186 HOH TIP D . I 5 HOH 36 188 188 HOH TIP D . I 5 HOH 37 189 189 HOH TIP D . I 5 HOH 38 191 191 HOH TIP D . I 5 HOH 39 193 193 HOH TIP D . I 5 HOH 40 198 198 HOH TIP D . I 5 HOH 41 199 199 HOH TIP D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3RKQ _cell.length_a 71.450 _cell.length_b 71.450 _cell.length_c 94.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RKQ _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3RKQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '50mM Tris pH 7.0, 5mM MgCl2, 15% polyethylene glycol monomethyl ether 550 , VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (III)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 3RKQ _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.7 _reflns.number_obs 29800 _reflns.number_all 30032 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 30.94 _refine.pdbx_ls_sigma_F 103.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.4000 _refine.ls_number_reflns_obs 29538 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2109 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2570 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.2000 _refine.ls_number_reflns_R_free 1266 _refine.ls_number_reflns_R_work 28272 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.9407 _refine.solvent_model_param_bsol 40.8257 _refine.solvent_model_param_ksol ? _refine.aniso_B[1][1] -1.2270 _refine.aniso_B[2][2] -1.2270 _refine.aniso_B[3][3] 2.4530 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 50.870 _refine.B_iso_min 3.240 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.entry_id 3RKQ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 998 _refine_hist.pdbx_number_atoms_nucleic_acid 773 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 1942 _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 30.94 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_mcbond_it ? 1.023 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 1.784 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 1.572 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.655 2.500 ? ? # _database_PDB_matrix.entry_id 3RKQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3RKQ _struct.title 'NKX2.5 Homeodomain dimer bound to ANF-242 DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RKQ _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'Helix-turn-Helix, DNA binding, Nucleus, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NKX25_HUMAN P52952 1 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCK 138 ? 2 PDB 3RKQ 3RKQ 2 TGAAGTGGGGGCCTCTTGA ? ? 3 PDB 3RKQ 3RKQ 3 TCAAGAGGCCCCCACTTCA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RKQ A 2 ? 58 ? P52952 138 ? 194 ? 138 194 2 1 3RKQ B 2 ? 58 ? P52952 138 ? 194 ? 138 194 3 2 3RKQ C 1 ? 19 ? 3RKQ 1 ? 19 ? 1 19 4 3 3RKQ D 1 ? 19 ? 3RKQ 1 ? 19 ? 1 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RKQ GLY A 1 ? UNP P52952 ? ? 'expression tag' 137 1 1 3RKQ SER A 57 ? UNP P52952 CYS 193 'engineered mutation' 193 2 2 3RKQ GLY B 1 ? UNP P52952 ? ? 'expression tag' 137 3 2 3RKQ SER B 57 ? UNP P52952 CYS 193 'engineered mutation' 193 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5080 ? 1 MORE -33 ? 1 'SSA (A^2)' 13490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? LYS A 22 ? SER A 146 LYS A 158 1 ? 13 HELX_P HELX_P2 2 SER A 28 ? LYS A 40 ? SER A 164 LYS A 176 1 ? 13 HELX_P HELX_P3 3 THR A 42 ? LYS A 58 ? THR A 178 LYS A 194 1 ? 17 HELX_P HELX_P4 4 SER B 10 ? LYS B 22 ? SER B 146 LYS B 158 1 ? 13 HELX_P HELX_P5 5 SER B 28 ? LYS B 40 ? SER B 164 LYS B 176 1 ? 13 HELX_P HELX_P6 6 THR B 42 ? SER B 57 ? THR B 178 SER B 193 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 19 N1 ? ? C DT 1 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 19 N6 ? ? C DT 1 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 18 N3 ? ? C DG 2 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 18 O2 ? ? C DG 2 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 18 N4 ? ? C DG 2 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 17 N3 ? ? C DA 3 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 17 O4 ? ? C DA 3 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 4 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 4 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 15 N3 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 15 O2 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 15 N4 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 6 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 6 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 13 N3 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 13 O2 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 13 N4 ? ? C DG 7 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 9 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 9 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 9 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 10 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 10 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 10 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 11 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 11 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 11 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 13 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 13 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 13 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 14 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 14 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 16 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 16 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 17 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DT 17 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 17 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 18 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 18 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 18 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 19 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 19 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DA 19 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 19 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE MG B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG B 6 ? ARG B 142 . ? 1_555 ? 2 AC1 4 ARG B 25 ? ARG B 161 . ? 5_555 ? 3 AC1 4 TYR B 26 ? TYR B 162 . ? 5_555 ? 4 AC1 4 HOH H . ? HOH C 32 . ? 1_555 ? # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG C 8 ? ? 0.055 'SIDE CHAIN' 2 1 DG C 10 ? ? 0.065 'SIDE CHAIN' 3 1 DC D 11 ? ? 0.066 'SIDE CHAIN' # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id LYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 194 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id LYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 58 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HOH O O N N 280 HOH H1 H N N 281 HOH H2 H N N 282 ILE N N N N 283 ILE CA C N S 284 ILE C C N N 285 ILE O O N N 286 ILE CB C N S 287 ILE CG1 C N N 288 ILE CG2 C N N 289 ILE CD1 C N N 290 ILE OXT O N N 291 ILE H H N N 292 ILE H2 H N N 293 ILE HA H N N 294 ILE HB H N N 295 ILE HG12 H N N 296 ILE HG13 H N N 297 ILE HG21 H N N 298 ILE HG22 H N N 299 ILE HG23 H N N 300 ILE HD11 H N N 301 ILE HD12 H N N 302 ILE HD13 H N N 303 ILE HXT H N N 304 LEU N N N N 305 LEU CA C N S 306 LEU C C N N 307 LEU O O N N 308 LEU CB C N N 309 LEU CG C N N 310 LEU CD1 C N N 311 LEU CD2 C N N 312 LEU OXT O N N 313 LEU H H N N 314 LEU H2 H N N 315 LEU HA H N N 316 LEU HB2 H N N 317 LEU HB3 H N N 318 LEU HG H N N 319 LEU HD11 H N N 320 LEU HD12 H N N 321 LEU HD13 H N N 322 LEU HD21 H N N 323 LEU HD22 H N N 324 LEU HD23 H N N 325 LEU HXT H N N 326 LYS N N N N 327 LYS CA C N S 328 LYS C C N N 329 LYS O O N N 330 LYS CB C N N 331 LYS CG C N N 332 LYS CD C N N 333 LYS CE C N N 334 LYS NZ N N N 335 LYS OXT O N N 336 LYS H H N N 337 LYS H2 H N N 338 LYS HA H N N 339 LYS HB2 H N N 340 LYS HB3 H N N 341 LYS HG2 H N N 342 LYS HG3 H N N 343 LYS HD2 H N N 344 LYS HD3 H N N 345 LYS HE2 H N N 346 LYS HE3 H N N 347 LYS HZ1 H N N 348 LYS HZ2 H N N 349 LYS HZ3 H N N 350 LYS HXT H N N 351 MG MG MG N N 352 PHE N N N N 353 PHE CA C N S 354 PHE C C N N 355 PHE O O N N 356 PHE CB C N N 357 PHE CG C Y N 358 PHE CD1 C Y N 359 PHE CD2 C Y N 360 PHE CE1 C Y N 361 PHE CE2 C Y N 362 PHE CZ C Y N 363 PHE OXT O N N 364 PHE H H N N 365 PHE H2 H N N 366 PHE HA H N N 367 PHE HB2 H N N 368 PHE HB3 H N N 369 PHE HD1 H N N 370 PHE HD2 H N N 371 PHE HE1 H N N 372 PHE HE2 H N N 373 PHE HZ H N N 374 PHE HXT H N N 375 PRO N N N N 376 PRO CA C N S 377 PRO C C N N 378 PRO O O N N 379 PRO CB C N N 380 PRO CG C N N 381 PRO CD C N N 382 PRO OXT O N N 383 PRO H H N N 384 PRO HA H N N 385 PRO HB2 H N N 386 PRO HB3 H N N 387 PRO HG2 H N N 388 PRO HG3 H N N 389 PRO HD2 H N N 390 PRO HD3 H N N 391 PRO HXT H N N 392 SER N N N N 393 SER CA C N S 394 SER C C N N 395 SER O O N N 396 SER CB C N N 397 SER OG O N N 398 SER OXT O N N 399 SER H H N N 400 SER H2 H N N 401 SER HA H N N 402 SER HB2 H N N 403 SER HB3 H N N 404 SER HG H N N 405 SER HXT H N N 406 THR N N N N 407 THR CA C N S 408 THR C C N N 409 THR O O N N 410 THR CB C N R 411 THR OG1 O N N 412 THR CG2 C N N 413 THR OXT O N N 414 THR H H N N 415 THR H2 H N N 416 THR HA H N N 417 THR HB H N N 418 THR HG1 H N N 419 THR HG21 H N N 420 THR HG22 H N N 421 THR HG23 H N N 422 THR HXT H N N 423 TRP N N N N 424 TRP CA C N S 425 TRP C C N N 426 TRP O O N N 427 TRP CB C N N 428 TRP CG C Y N 429 TRP CD1 C Y N 430 TRP CD2 C Y N 431 TRP NE1 N Y N 432 TRP CE2 C Y N 433 TRP CE3 C Y N 434 TRP CZ2 C Y N 435 TRP CZ3 C Y N 436 TRP CH2 C Y N 437 TRP OXT O N N 438 TRP H H N N 439 TRP H2 H N N 440 TRP HA H N N 441 TRP HB2 H N N 442 TRP HB3 H N N 443 TRP HD1 H N N 444 TRP HE1 H N N 445 TRP HE3 H N N 446 TRP HZ2 H N N 447 TRP HZ3 H N N 448 TRP HH2 H N N 449 TRP HXT H N N 450 TYR N N N N 451 TYR CA C N S 452 TYR C C N N 453 TYR O O N N 454 TYR CB C N N 455 TYR CG C Y N 456 TYR CD1 C Y N 457 TYR CD2 C Y N 458 TYR CE1 C Y N 459 TYR CE2 C Y N 460 TYR CZ C Y N 461 TYR OH O N N 462 TYR OXT O N N 463 TYR H H N N 464 TYR H2 H N N 465 TYR HA H N N 466 TYR HB2 H N N 467 TYR HB3 H N N 468 TYR HD1 H N N 469 TYR HD2 H N N 470 TYR HE1 H N N 471 TYR HE2 H N N 472 TYR HH H N N 473 TYR HXT H N N 474 VAL N N N N 475 VAL CA C N S 476 VAL C C N N 477 VAL O O N N 478 VAL CB C N N 479 VAL CG1 C N N 480 VAL CG2 C N N 481 VAL OXT O N N 482 VAL H H N N 483 VAL H2 H N N 484 VAL HA H N N 485 VAL HB H N N 486 VAL HG11 H N N 487 VAL HG12 H N N 488 VAL HG13 H N N 489 VAL HG21 H N N 490 VAL HG22 H N N 491 VAL HG23 H N N 492 VAL HXT H N N 493 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HOH O H1 sing N N 278 HOH O H2 sing N N 279 ILE N CA sing N N 280 ILE N H sing N N 281 ILE N H2 sing N N 282 ILE CA C sing N N 283 ILE CA CB sing N N 284 ILE CA HA sing N N 285 ILE C O doub N N 286 ILE C OXT sing N N 287 ILE CB CG1 sing N N 288 ILE CB CG2 sing N N 289 ILE CB HB sing N N 290 ILE CG1 CD1 sing N N 291 ILE CG1 HG12 sing N N 292 ILE CG1 HG13 sing N N 293 ILE CG2 HG21 sing N N 294 ILE CG2 HG22 sing N N 295 ILE CG2 HG23 sing N N 296 ILE CD1 HD11 sing N N 297 ILE CD1 HD12 sing N N 298 ILE CD1 HD13 sing N N 299 ILE OXT HXT sing N N 300 LEU N CA sing N N 301 LEU N H sing N N 302 LEU N H2 sing N N 303 LEU CA C sing N N 304 LEU CA CB sing N N 305 LEU CA HA sing N N 306 LEU C O doub N N 307 LEU C OXT sing N N 308 LEU CB CG sing N N 309 LEU CB HB2 sing N N 310 LEU CB HB3 sing N N 311 LEU CG CD1 sing N N 312 LEU CG CD2 sing N N 313 LEU CG HG sing N N 314 LEU CD1 HD11 sing N N 315 LEU CD1 HD12 sing N N 316 LEU CD1 HD13 sing N N 317 LEU CD2 HD21 sing N N 318 LEU CD2 HD22 sing N N 319 LEU CD2 HD23 sing N N 320 LEU OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 PHE N CA sing N N 346 PHE N H sing N N 347 PHE N H2 sing N N 348 PHE CA C sing N N 349 PHE CA CB sing N N 350 PHE CA HA sing N N 351 PHE C O doub N N 352 PHE C OXT sing N N 353 PHE CB CG sing N N 354 PHE CB HB2 sing N N 355 PHE CB HB3 sing N N 356 PHE CG CD1 doub Y N 357 PHE CG CD2 sing Y N 358 PHE CD1 CE1 sing Y N 359 PHE CD1 HD1 sing N N 360 PHE CD2 CE2 doub Y N 361 PHE CD2 HD2 sing N N 362 PHE CE1 CZ doub Y N 363 PHE CE1 HE1 sing N N 364 PHE CE2 CZ sing Y N 365 PHE CE2 HE2 sing N N 366 PHE CZ HZ sing N N 367 PHE OXT HXT sing N N 368 PRO N CA sing N N 369 PRO N CD sing N N 370 PRO N H sing N N 371 PRO CA C sing N N 372 PRO CA CB sing N N 373 PRO CA HA sing N N 374 PRO C O doub N N 375 PRO C OXT sing N N 376 PRO CB CG sing N N 377 PRO CB HB2 sing N N 378 PRO CB HB3 sing N N 379 PRO CG CD sing N N 380 PRO CG HG2 sing N N 381 PRO CG HG3 sing N N 382 PRO CD HD2 sing N N 383 PRO CD HD3 sing N N 384 PRO OXT HXT sing N N 385 SER N CA sing N N 386 SER N H sing N N 387 SER N H2 sing N N 388 SER CA C sing N N 389 SER CA CB sing N N 390 SER CA HA sing N N 391 SER C O doub N N 392 SER C OXT sing N N 393 SER CB OG sing N N 394 SER CB HB2 sing N N 395 SER CB HB3 sing N N 396 SER OG HG sing N N 397 SER OXT HXT sing N N 398 THR N CA sing N N 399 THR N H sing N N 400 THR N H2 sing N N 401 THR CA C sing N N 402 THR CA CB sing N N 403 THR CA HA sing N N 404 THR C O doub N N 405 THR C OXT sing N N 406 THR CB OG1 sing N N 407 THR CB CG2 sing N N 408 THR CB HB sing N N 409 THR OG1 HG1 sing N N 410 THR CG2 HG21 sing N N 411 THR CG2 HG22 sing N N 412 THR CG2 HG23 sing N N 413 THR OXT HXT sing N N 414 TRP N CA sing N N 415 TRP N H sing N N 416 TRP N H2 sing N N 417 TRP CA C sing N N 418 TRP CA CB sing N N 419 TRP CA HA sing N N 420 TRP C O doub N N 421 TRP C OXT sing N N 422 TRP CB CG sing N N 423 TRP CB HB2 sing N N 424 TRP CB HB3 sing N N 425 TRP CG CD1 doub Y N 426 TRP CG CD2 sing Y N 427 TRP CD1 NE1 sing Y N 428 TRP CD1 HD1 sing N N 429 TRP CD2 CE2 doub Y N 430 TRP CD2 CE3 sing Y N 431 TRP NE1 CE2 sing Y N 432 TRP NE1 HE1 sing N N 433 TRP CE2 CZ2 sing Y N 434 TRP CE3 CZ3 doub Y N 435 TRP CE3 HE3 sing N N 436 TRP CZ2 CH2 doub Y N 437 TRP CZ2 HZ2 sing N N 438 TRP CZ3 CH2 sing Y N 439 TRP CZ3 HZ3 sing N N 440 TRP CH2 HH2 sing N N 441 TRP OXT HXT sing N N 442 TYR N CA sing N N 443 TYR N H sing N N 444 TYR N H2 sing N N 445 TYR CA C sing N N 446 TYR CA CB sing N N 447 TYR CA HA sing N N 448 TYR C O doub N N 449 TYR C OXT sing N N 450 TYR CB CG sing N N 451 TYR CB HB2 sing N N 452 TYR CB HB3 sing N N 453 TYR CG CD1 doub Y N 454 TYR CG CD2 sing Y N 455 TYR CD1 CE1 sing Y N 456 TYR CD1 HD1 sing N N 457 TYR CD2 CE2 doub Y N 458 TYR CD2 HD2 sing N N 459 TYR CE1 CZ doub Y N 460 TYR CE1 HE1 sing N N 461 TYR CE2 CZ sing Y N 462 TYR CE2 HE2 sing N N 463 TYR CZ OH sing N N 464 TYR OH HH sing N N 465 TYR OXT HXT sing N N 466 VAL N CA sing N N 467 VAL N H sing N N 468 VAL N H2 sing N N 469 VAL CA C sing N N 470 VAL CA CB sing N N 471 VAL CA HA sing N N 472 VAL C O doub N N 473 VAL C OXT sing N N 474 VAL CB CG1 sing N N 475 VAL CB CG2 sing N N 476 VAL CB HB sing N N 477 VAL CG1 HG11 sing N N 478 VAL CG1 HG12 sing N N 479 VAL CG1 HG13 sing N N 480 VAL CG2 HG21 sing N N 481 VAL CG2 HG22 sing N N 482 VAL CG2 HG23 sing N N 483 VAL OXT HXT sing N N 484 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3RKQ 'double helix' 3RKQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 1 1_555 D DA 19 1_555 -0.617 0.013 0.390 -25.837 -36.461 1.026 1 C_DT1:DA19_D C 1 ? D 19 ? 20 1 1 C DG 2 1_555 D DC 18 1_555 -0.249 -0.026 -0.655 -15.927 -3.919 1.488 2 C_DG2:DC18_D C 2 ? D 18 ? 19 1 1 C DA 3 1_555 D DT 17 1_555 -0.168 -0.018 -0.270 -4.619 -20.298 1.725 3 C_DA3:DT17_D C 3 ? D 17 ? 20 1 1 C DA 4 1_555 D DT 16 1_555 -0.588 0.143 0.143 3.960 -14.471 3.733 4 C_DA4:DT16_D C 4 ? D 16 ? 20 1 1 C DG 5 1_555 D DC 15 1_555 0.045 -0.116 -0.354 -4.342 -8.163 -0.061 5 C_DG5:DC15_D C 5 ? D 15 ? 19 1 1 C DT 6 1_555 D DA 14 1_555 -0.143 -0.031 0.057 6.596 -10.010 4.878 6 C_DT6:DA14_D C 6 ? D 14 ? 20 1 1 C DG 7 1_555 D DC 13 1_555 0.861 -0.217 -0.193 7.455 -2.331 -6.308 7 C_DG7:DC13_D C 7 ? D 13 ? 19 1 1 C DG 8 1_555 D DC 12 1_555 -0.476 -0.455 -0.157 7.000 -2.592 -6.093 8 C_DG8:DC12_D C 8 ? D 12 ? 19 1 1 C DG 9 1_555 D DC 11 1_555 -0.663 -0.489 -0.654 -12.941 1.216 -6.612 9 C_DG9:DC11_D C 9 ? D 11 ? 19 1 1 C DG 10 1_555 D DC 10 1_555 -0.767 -0.493 -0.888 -4.932 6.505 -6.395 10 C_DG10:DC10_D C 10 ? D 10 ? 19 1 1 C DG 11 1_555 D DC 9 1_555 -0.130 -0.419 -0.766 -7.514 5.980 -1.087 11 C_DG11:DC9_D C 11 ? D 9 ? 19 1 1 C DC 12 1_555 D DG 8 1_555 -0.056 -0.080 -0.349 1.570 -5.720 -2.870 12 C_DC12:DG8_D C 12 ? D 8 ? 19 1 1 C DC 13 1_555 D DG 7 1_555 0.608 -0.087 0.173 -6.681 -6.165 -0.011 13 C_DC13:DG7_D C 13 ? D 7 ? 19 1 1 C DT 14 1_555 D DA 6 1_555 -0.386 -0.157 -0.150 -1.704 -11.989 2.569 14 C_DT14:DA6_D C 14 ? D 6 ? 20 1 1 C DC 15 1_555 D DG 5 1_555 0.516 -0.036 -0.023 4.458 -7.984 -0.354 15 C_DC15:DG5_D C 15 ? D 5 ? 19 1 1 C DT 16 1_555 D DA 4 1_555 -0.291 -0.247 -0.251 0.616 -12.398 1.482 16 C_DT16:DA4_D C 16 ? D 4 ? 20 1 1 C DT 17 1_555 D DA 3 1_555 -0.207 -0.116 -0.087 -3.570 -11.707 -4.272 17 C_DT17:DA3_D C 17 ? D 3 ? 20 1 1 C DG 18 1_555 D DC 2 1_555 0.225 -0.245 -0.345 8.965 0.994 -3.083 18 C_DG18:DC2_D C 18 ? D 2 ? 19 1 1 C DA 19 1_555 D DT 1 1_555 0.268 -0.079 0.283 31.194 -21.075 -8.387 19 C_DA19:DT1_D C 19 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 1 1_555 D DA 19 1_555 C DG 2 1_555 D DC 18 1_555 1.109 2.599 3.167 3.291 -0.541 39.007 3.942 -1.270 3.211 -0.808 -4.917 39.144 1 CC_DT1DG2:DC18DA19_DD C 1 ? D 19 ? C 2 ? D 18 ? 1 C DG 2 1_555 D DC 18 1_555 C DA 3 1_555 D DT 17 1_555 -0.896 2.132 3.004 -6.303 4.602 35.083 2.810 0.567 3.353 7.520 10.299 35.914 2 CC_DG2DA3:DT17DC18_DD C 2 ? D 18 ? C 3 ? D 17 ? 1 C DA 3 1_555 D DT 17 1_555 C DA 4 1_555 D DT 16 1_555 0.677 -0.020 3.088 -5.468 0.370 32.283 -0.094 -2.076 2.936 0.659 9.746 32.732 3 CC_DA3DA4:DT16DT17_DD C 3 ? D 17 ? C 4 ? D 16 ? 1 C DA 4 1_555 D DT 16 1_555 C DG 5 1_555 D DC 15 1_555 -0.890 -0.347 3.500 0.944 3.591 39.855 -0.944 1.415 3.437 5.254 -1.381 40.020 4 CC_DA4DG5:DC15DT16_DD C 4 ? D 16 ? C 5 ? D 15 ? 1 C DG 5 1_555 D DC 15 1_555 C DT 6 1_555 D DA 14 1_555 -0.154 -0.570 3.099 -3.762 2.946 25.409 -2.047 -0.642 3.006 6.623 8.458 25.847 5 CC_DG5DT6:DA14DC15_DD C 5 ? D 15 ? C 6 ? D 14 ? 1 C DT 6 1_555 D DA 14 1_555 C DG 7 1_555 D DC 13 1_555 0.215 0.037 3.413 3.738 8.420 35.011 -1.186 0.206 3.337 13.704 -6.085 36.166 6 CC_DT6DG7:DC13DA14_DD C 6 ? D 14 ? C 7 ? D 13 ? 1 C DG 7 1_555 D DC 13 1_555 C DG 8 1_555 D DC 12 1_555 0.104 -0.376 3.354 -1.306 10.510 28.881 -2.786 -0.454 3.027 20.233 2.515 30.723 7 CC_DG7DG8:DC12DC13_DD C 7 ? D 13 ? C 8 ? D 12 ? 1 C DG 8 1_555 D DC 12 1_555 C DG 9 1_555 D DC 11 1_555 -0.102 -1.646 3.829 -1.388 9.764 33.210 -4.427 -0.064 3.231 16.633 2.364 34.604 8 CC_DG8DG9:DC11DC12_DD C 8 ? D 12 ? C 9 ? D 11 ? 1 C DG 9 1_555 D DC 11 1_555 C DG 10 1_555 D DC 10 1_555 0.627 -1.096 3.321 2.166 11.257 27.216 -4.457 -0.788 2.705 22.688 -4.366 29.490 9 CC_DG9DG10:DC10DC11_DD C 9 ? D 11 ? C 10 ? D 10 ? 1 C DG 10 1_555 D DC 10 1_555 C DG 11 1_555 D DC 9 1_555 0.630 -1.497 3.623 -1.449 4.777 35.119 -3.210 -1.262 3.369 7.868 2.386 35.461 10 CC_DG10DG11:DC9DC10_DD C 10 ? D 10 ? C 11 ? D 9 ? 1 C DG 11 1_555 D DC 9 1_555 C DC 12 1_555 D DG 8 1_555 -0.647 -0.559 3.095 -3.618 8.037 30.925 -2.361 0.562 2.917 14.702 6.618 32.127 11 CC_DG11DC12:DG8DC9_DD C 11 ? D 9 ? C 12 ? D 8 ? 1 C DC 12 1_555 D DG 8 1_555 C DC 13 1_555 D DG 7 1_555 0.119 -0.881 3.503 -1.242 10.548 34.826 -2.932 -0.369 3.109 17.137 2.019 36.361 12 CC_DC12DC13:DG7DG8_DD C 12 ? D 8 ? C 13 ? D 7 ? 1 C DC 13 1_555 D DG 7 1_555 C DT 14 1_555 D DA 6 1_555 0.547 -0.190 3.069 6.386 3.656 32.330 -0.919 0.064 3.079 6.462 -11.286 33.135 13 CC_DC13DT14:DA6DG7_DD C 13 ? D 7 ? C 14 ? D 6 ? 1 C DT 14 1_555 D DA 6 1_555 C DC 15 1_555 D DG 5 1_555 -0.158 0.162 3.279 -0.907 8.588 30.080 -1.344 0.120 3.205 16.133 1.704 31.268 14 CC_DT14DC15:DG5DA6_DD C 14 ? D 6 ? C 15 ? D 5 ? 1 C DC 15 1_555 D DG 5 1_555 C DT 16 1_555 D DA 4 1_555 0.569 -0.402 3.416 5.676 7.998 33.677 -1.925 -0.053 3.288 13.454 -9.549 35.036 15 CC_DC15DT16:DA4DG5_DD C 15 ? D 5 ? C 16 ? D 4 ? 1 C DT 16 1_555 D DA 4 1_555 C DT 17 1_555 D DA 3 1_555 -0.708 -0.154 3.464 -3.439 -3.615 34.001 0.345 0.622 3.514 -6.140 5.842 34.354 16 CC_DT16DT17:DA3DA4_DD C 16 ? D 4 ? C 17 ? D 3 ? 1 C DT 17 1_555 D DA 3 1_555 C DG 18 1_555 D DC 2 1_555 1.106 2.086 3.164 7.087 2.061 36.543 2.987 -0.775 3.420 3.246 -11.162 37.256 17 CC_DT17DG18:DC2DA3_DD C 17 ? D 3 ? C 18 ? D 2 ? 1 C DG 18 1_555 D DC 2 1_555 C DA 19 1_555 D DT 1 1_555 -0.973 2.320 2.884 -1.301 -2.294 34.432 4.216 1.465 2.762 -3.868 2.194 34.530 18 CC_DG18DA19:DT1DC2_DD C 18 ? D 2 ? C 19 ? D 1 ? # _atom_sites.entry_id 3RKQ _atom_sites.fract_transf_matrix[1][1] 0.013996 _atom_sites.fract_transf_matrix[1][2] 0.008080 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016161 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010601 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_