data_3SUY # _entry.id 3SUY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SUY pdb_00003suy 10.2210/pdb3suy/pdb NDB NA1225 ? ? RCSB RCSB066683 ? ? WWPDB D_1000066683 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SUH 'same RNA' unspecified PDB 3SUX 'same RNA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SUY _pdbx_database_status.recvd_initial_deposition_date 2011-07-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Serganov, A.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 14801 _citation.page_last 14806 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21873197 _citation.pdbx_database_id_DOI 10.1073/pnas.1111701108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Ishibe-Murakami, S.' 2 ? primary 'Patel, D.J.' 3 ? primary 'Serganov, A.' 4 ? # _cell.entry_id 3SUY _cell.length_a 124.172 _cell.length_b 124.172 _cell.length_c 150.428 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SUY _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description riboswitch _entity.formula_weight 32837.461 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'RNA (101-MER)' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUUC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 G n 1 7 A n 1 8 G n 1 9 U n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 A n 1 15 A n 1 16 A n 1 17 C n 1 18 G n 1 19 U n 1 20 G n 1 21 C n 1 22 G n 1 23 U n 1 24 A n 1 25 A n 1 26 A n 1 27 G n 1 28 U n 1 29 G n 1 30 C n 1 31 C n 1 32 U n 1 33 G n 1 34 A n 1 35 G n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 G n 1 41 G n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 U n 1 47 U n 1 48 G n 1 49 U n 1 50 C n 1 51 C n 1 52 U n 1 53 C n 1 54 A n 1 55 G n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 A n 1 61 A n 1 62 C n 1 63 A n 1 64 C n 1 65 C n 1 66 G n 1 67 A n 1 68 A n 1 69 A n 1 70 G n 1 71 G n 1 72 U n 1 73 G n 1 74 G n 1 75 C n 1 76 G n 1 77 G n 1 78 U n 1 79 A n 1 80 C n 1 81 G n 1 82 U n 1 83 U n 1 84 U n 1 85 A n 1 86 C n 1 87 C n 1 88 G n 1 89 C n 1 90 A n 1 91 U n 1 92 C n 1 93 U n 1 94 C n 1 95 G n 1 96 C n 1 97 U n 1 98 G n 1 99 U n 1 100 U n 1 101 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Eubacterium siraeum V10Sc8a' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 717961 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SUY _struct_ref.pdbx_db_accession 3SUY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SUY _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3SUY _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3SUY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.40 _exptl_crystal.density_percent_sol 63.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.1 M Tris-HCl, pH 7.0 4.2 M Na-formate, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-04-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3SUY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 3.20 _reflns.number_obs 7451 _reflns.number_all 7473 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.31 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.74 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 738 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SUY _refine.ls_number_reflns_obs 7084 _refine.ls_number_reflns_all 7105 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.21 _refine.ls_percent_reflns_obs 99.70 _refine.ls_R_factor_obs 0.22499 _refine.ls_R_factor_all 0.22499 _refine.ls_R_factor_R_work 0.22281 _refine.ls_R_factor_R_free 0.26906 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 341 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.B_iso_mean 103.080 _refine.aniso_B[1][1] 1.00 _refine.aniso_B[2][2] 1.00 _refine.aniso_B[3][3] -1.50 _refine.aniso_B[1][2] 0.50 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 3SUX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.487 _refine.overall_SU_ML 0.373 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 21.152 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2176 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2176 _refine_hist.d_res_high 3.21 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.021 ? 2437 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.361 3.000 ? 3803 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.057 0.200 ? 504 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.003 0.020 ? 1066 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined 0.162 0.200 ? 828 ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.276 0.200 ? 1488 ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.184 0.200 ? 65 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.146 0.200 ? 54 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.148 0.200 ? 20 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 0.795 3.000 ? 3504 ? 'X-RAY DIFFRACTION' r_scangle_it 1.525 4.500 ? 3803 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.211 _refine_ls_shell.d_res_low 3.292 _refine_ls_shell.number_reflns_R_work 495 _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.percent_reflns_obs 98.29 _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SUY _struct.title 'Crystal structure of THF riboswitch, unbound status' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SUY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'three-way junction, pseudoknot, gene regulator, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 100 "O3'" ? ? ? 1_555 A CCC 101 P ? ? X U 100 X CCC 101 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? A A 10 N1 ? ? ? 1_555 A G 88 N1 ? ? X A 10 X G 88 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A A 10 N6 ? ? ? 1_555 A G 88 O6 ? ? X A 10 X G 88 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 87 N3 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 87 O2 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 87 N4 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 86 N3 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 86 O2 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 86 N4 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 85 N1 ? ? X U 13 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 85 N6 ? ? X U 13 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 84 N3 ? ? X A 14 X U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 84 O4 ? ? X A 14 X U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 83 N3 ? ? X A 15 X U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 83 O4 ? ? X A 15 X U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 82 N3 ? ? X A 16 X U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 82 O4 ? ? X A 16 X U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 81 N1 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 81 O6 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 81 N2 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 80 N3 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 80 O2 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 80 N4 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 79 N1 ? ? X U 19 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 79 N6 ? ? X U 19 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 20 N1 ? ? ? 1_555 A U 78 O2 ? ? X G 20 X U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 78 N3 ? ? X G 20 X U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 76 N1 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 76 O6 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 76 N2 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 22 N2 ? ? ? 1_555 A A 25 N1 ? ? X G 22 X A 25 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 75 N3 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 75 O2 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 75 N4 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 23 N3 ? ? ? 1_555 A G 74 O6 ? ? X U 23 X G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 23 O2 ? ? ? 1_555 A G 74 N1 ? ? X U 23 X G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A A 26 N6 ? ? ? 1_555 A A 60 N1 ? ? X A 26 X A 60 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? A A 26 N7 ? ? ? 1_555 A A 60 N6 ? ? X A 26 X A 60 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog38 hydrog ? ? A A 26 N1 ? ? ? 1_555 A G 76 N2 ? ? X A 26 X G 76 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 27 O6 ? ? ? 1_555 A G 59 N1 ? ? X G 27 X G 59 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog40 hydrog ? ? A U 28 O4 ? ? ? 1_555 A C 58 N4 ? ? X U 28 X C 58 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 29 N1 ? ? ? 1_555 A A 57 N1 ? ? X G 29 X A 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A G 29 O6 ? ? ? 1_555 A A 57 N6 ? ? X G 29 X A 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 56 N1 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 56 O6 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 56 N2 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 55 N1 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 55 O6 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 55 N2 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 54 N1 ? ? X U 32 X A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 54 N6 ? ? X U 32 X A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 53 N3 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 53 O2 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 53 N4 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 34 N1 ? ? ? 1_555 A U 52 N3 ? ? X A 34 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 34 N6 ? ? ? 1_555 A U 52 O4 ? ? X A 34 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 51 N3 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 51 O2 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 51 N4 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 50 N3 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 50 O2 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 50 N4 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 37 N1 ? ? ? 1_555 A U 49 O2 ? ? X G 37 X U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A G 37 O6 ? ? ? 1_555 A U 49 N3 ? ? X G 37 X U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 47 N3 ? ? X A 38 X U 47 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog65 hydrog ? ? A C 39 O2 ? ? ? 1_555 A U 46 N3 ? ? X C 39 X U 46 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog66 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 94 N3 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 94 O2 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 94 N4 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 42 N1 ? ? ? 1_555 A U 93 O2 ? ? X G 42 X U 93 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 92 N3 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 92 O2 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 92 N4 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 91 N3 ? ? X A 44 X U 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 91 O4 ? ? X A 44 X U 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 45 N2 ? ? ? 1_555 A U 91 O4 ? ? X G 45 X U 91 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog76 hydrog ? ? A A 61 N3 ? ? ? 1_555 A G 74 N2 ? ? X A 61 X G 74 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog77 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 73 N1 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 73 O6 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 73 N2 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 63 N1 ? ? ? 1_555 A U 72 N3 ? ? X A 63 X U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A A 63 N6 ? ? ? 1_555 A U 72 O4 ? ? X A 63 X U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 64 N3 ? ? ? 1_555 A G 71 N1 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 64 N4 ? ? ? 1_555 A G 71 O6 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 64 O2 ? ? ? 1_555 A G 71 N2 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 70 N1 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 70 O6 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 70 N2 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 66 N2 ? ? ? 1_555 A A 69 N7 ? ? X G 66 X A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 3SUY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SUY _atom_sites.fract_transf_matrix[1][1] 0.008053 _atom_sites.fract_transf_matrix[1][2] 0.004650 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009299 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006648 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 C 4 4 4 C C X . n A 1 5 A 5 5 5 A A X . n A 1 6 G 6 6 6 G G X . n A 1 7 A 7 7 7 A A X . n A 1 8 G 8 8 8 G G X . n A 1 9 U 9 9 9 U U X . n A 1 10 A 10 10 10 A A X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 U 13 13 13 U U X . n A 1 14 A 14 14 14 A A X . n A 1 15 A 15 15 15 A A X . n A 1 16 A 16 16 16 A A X . n A 1 17 C 17 17 17 C C X . n A 1 18 G 18 18 18 G G X . n A 1 19 U 19 19 19 U U X . n A 1 20 G 20 20 20 G G X . n A 1 21 C 21 21 21 C C X . n A 1 22 G 22 22 22 G G X . n A 1 23 U 23 23 23 U U X . n A 1 24 A 24 24 24 A A X . n A 1 25 A 25 25 25 A A X . n A 1 26 A 26 26 26 A A X . n A 1 27 G 27 27 27 G G X . n A 1 28 U 28 28 28 U U X . n A 1 29 G 29 29 29 G G X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 U 32 32 32 U U X . n A 1 33 G 33 33 33 G G X . n A 1 34 A 34 34 34 A A X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 G 37 37 37 G G X . n A 1 38 A 38 38 38 A A X . n A 1 39 C 39 39 39 C C X . n A 1 40 G 40 40 40 G G X . n A 1 41 G 41 41 41 G G X . n A 1 42 G 42 42 42 G G X . n A 1 43 G 43 43 43 G G X . n A 1 44 A 44 44 44 A A X . n A 1 45 G 45 45 45 G G X . n A 1 46 U 46 46 46 U U X . n A 1 47 U 47 47 47 U U X . n A 1 48 G 48 48 48 G G X . n A 1 49 U 49 49 49 U U X . n A 1 50 C 50 50 50 C C X . n A 1 51 C 51 51 51 C C X . n A 1 52 U 52 52 52 U U X . n A 1 53 C 53 53 53 C C X . n A 1 54 A 54 54 54 A A X . n A 1 55 G 55 55 55 G G X . n A 1 56 G 56 56 56 G G X . n A 1 57 A 57 57 57 A A X . n A 1 58 C 58 58 58 C C X . n A 1 59 G 59 59 59 G G X . n A 1 60 A 60 60 60 A A X . n A 1 61 A 61 61 61 A A X . n A 1 62 C 62 62 62 C C X . n A 1 63 A 63 63 63 A A X . n A 1 64 C 64 64 64 C C X . n A 1 65 C 65 65 65 C C X . n A 1 66 G 66 66 66 G G X . n A 1 67 A 67 67 67 A A X . n A 1 68 A 68 68 68 A A X . n A 1 69 A 69 69 69 A A X . n A 1 70 G 70 70 70 G G X . n A 1 71 G 71 71 71 G G X . n A 1 72 U 72 72 72 U U X . n A 1 73 G 73 73 73 G G X . n A 1 74 G 74 74 74 G G X . n A 1 75 C 75 75 75 C C X . n A 1 76 G 76 76 76 G G X . n A 1 77 G 77 77 77 G G X . n A 1 78 U 78 78 78 U U X . n A 1 79 A 79 79 79 A A X . n A 1 80 C 80 80 80 C C X . n A 1 81 G 81 81 81 G G X . n A 1 82 U 82 82 82 U U X . n A 1 83 U 83 83 83 U U X . n A 1 84 U 84 84 84 U U X . n A 1 85 A 85 85 85 A A X . n A 1 86 C 86 86 86 C C X . n A 1 87 C 87 87 87 C C X . n A 1 88 G 88 88 88 G G X . n A 1 89 C 89 89 89 C C X . n A 1 90 A 90 90 90 A A X . n A 1 91 U 91 91 91 U U X . n A 1 92 C 92 92 92 C C X . n A 1 93 U 93 93 93 U U X . n A 1 94 C 94 94 94 C C X . n A 1 95 G 95 95 95 G G X . n A 1 96 C 96 96 96 C C X . n A 1 97 U 97 97 97 U U X . n A 1 98 G 98 98 98 G G X . n A 1 99 U 99 99 99 U U X . n A 1 100 U 100 100 100 U U X . n A 1 101 CCC 101 101 101 CCC CCC X . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CCC _pdbx_struct_mod_residue.label_seq_id 101 _pdbx_struct_mod_residue.auth_asym_id X _pdbx_struct_mod_residue.auth_comp_id CCC _pdbx_struct_mod_residue.auth_seq_id 101 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id C _pdbx_struct_mod_residue.details ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 2 1,2 A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3820 ? 2 MORE -27.4 ? 2 'SSA (A^2)' 31840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 71.6907376258 0.0000000000 0.0000000000 -1.0000000000 100.2853333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-14 2 'Structure model' 1 1 2012-03-14 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 REFMAC refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 REFMAC phasing . ? 5 # _pdbx_entry_details.entry_id 3SUY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE DATABASE REFERENCE CLOSEST TO THE CRYSTALLIZED SEQUENCE IS GB 291556121 (NUCLEOTIDES RANGE: 95183-95281). TO FACILITATE CRYSTALLIZATION, NONCANONICAL BASE PAIRS WERE CONVERTED TO THEIR WATSON CRICK COUNTERPARTS BY U14A, U65C, AND U85A MUTATIONS. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X A 7 ? ? "C1'" X A 7 ? ? N9 X A 7 ? ? 112.80 108.50 4.30 0.70 N 2 1 "C1'" X A 25 ? ? "O4'" X A 25 ? ? "C4'" X A 25 ? ? 103.87 109.70 -5.83 0.70 N 3 1 "O4'" X C 58 ? ? "C1'" X C 58 ? ? N1 X C 58 ? ? 113.40 108.50 4.90 0.70 N 4 1 "C4'" X G 59 ? ? "C3'" X G 59 ? ? "C2'" X G 59 ? ? 94.69 102.60 -7.91 1.00 N 5 1 "O4'" X G 59 ? ? "C1'" X G 59 ? ? N9 X G 59 ? ? 112.73 108.50 4.23 0.70 N 6 1 "O4'" X A 60 ? ? "C1'" X A 60 ? ? N9 X A 60 ? ? 113.17 108.50 4.67 0.70 N 7 1 "C3'" X A 90 ? ? "O3'" X A 90 ? ? P X U 91 ? ? 128.99 119.70 9.29 1.20 Y 8 1 "O4'" X U 93 ? ? "C1'" X U 93 ? ? N1 X U 93 ? ? 112.99 108.50 4.49 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 U OP3 O N N 148 U P P N N 149 U OP1 O N N 150 U OP2 O N N 151 U "O5'" O N N 152 U "C5'" C N N 153 U "C4'" C N R 154 U "O4'" O N N 155 U "C3'" C N S 156 U "O3'" O N N 157 U "C2'" C N R 158 U "O2'" O N N 159 U "C1'" C N R 160 U N1 N N N 161 U C2 C N N 162 U O2 O N N 163 U N3 N N N 164 U C4 C N N 165 U O4 O N N 166 U C5 C N N 167 U C6 C N N 168 U HOP3 H N N 169 U HOP2 H N N 170 U "H5'" H N N 171 U "H5''" H N N 172 U "H4'" H N N 173 U "H3'" H N N 174 U "HO3'" H N N 175 U "H2'" H N N 176 U "HO2'" H N N 177 U "H1'" H N N 178 U H3 H N N 179 U H5 H N N 180 U H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 U OP3 P sing N N 155 U OP3 HOP3 sing N N 156 U P OP1 doub N N 157 U P OP2 sing N N 158 U P "O5'" sing N N 159 U OP2 HOP2 sing N N 160 U "O5'" "C5'" sing N N 161 U "C5'" "C4'" sing N N 162 U "C5'" "H5'" sing N N 163 U "C5'" "H5''" sing N N 164 U "C4'" "O4'" sing N N 165 U "C4'" "C3'" sing N N 166 U "C4'" "H4'" sing N N 167 U "O4'" "C1'" sing N N 168 U "C3'" "O3'" sing N N 169 U "C3'" "C2'" sing N N 170 U "C3'" "H3'" sing N N 171 U "O3'" "HO3'" sing N N 172 U "C2'" "O2'" sing N N 173 U "C2'" "C1'" sing N N 174 U "C2'" "H2'" sing N N 175 U "O2'" "HO2'" sing N N 176 U "C1'" N1 sing N N 177 U "C1'" "H1'" sing N N 178 U N1 C2 sing N N 179 U N1 C6 sing N N 180 U C2 O2 doub N N 181 U C2 N3 sing N N 182 U N3 C4 sing N N 183 U N3 H3 sing N N 184 U C4 O4 doub N N 185 U C4 C5 sing N N 186 U C5 C6 doub N N 187 U C5 H5 sing N N 188 U C6 H6 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SUY 'double helix' 3SUY 'a-form double helix' 3SUY 'bulge loop' 3SUY 'mismatched base pair' 3SUY 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 10 1_555 A G 88 1_555 -0.483 1.540 -0.068 12.929 0.615 -21.828 1 X_A10:G88_X X 10 ? X 88 ? 8 1 1 A G 11 1_555 A C 87 1_555 -0.279 0.186 0.212 4.893 -10.663 1.742 2 X_G11:C87_X X 11 ? X 87 ? 19 1 1 A G 12 1_555 A C 86 1_555 -0.319 -0.193 -0.207 -8.553 -9.788 0.674 3 X_G12:C86_X X 12 ? X 86 ? 19 1 1 A U 13 1_555 A A 85 1_555 -0.199 -0.172 0.092 -3.001 -14.449 -1.769 4 X_U13:A85_X X 13 ? X 85 ? 20 1 1 A A 14 1_555 A U 84 1_555 0.693 -0.190 0.177 -3.845 -14.346 -0.478 5 X_A14:U84_X X 14 ? X 84 ? 20 1 1 A A 15 1_555 A U 83 1_555 -0.165 -0.448 0.554 6.158 -9.056 -2.499 6 X_A15:U83_X X 15 ? X 83 ? 20 1 1 A A 16 1_555 A U 82 1_555 0.345 -0.060 -0.170 -2.089 -27.630 -1.010 7 X_A16:U82_X X 16 ? X 82 ? 20 1 1 A C 17 1_555 A G 81 1_555 0.669 -0.267 0.381 -3.791 -16.911 1.168 8 X_C17:G81_X X 17 ? X 81 ? 19 1 1 A G 18 1_555 A C 80 1_555 -0.098 0.091 0.234 -2.804 -6.297 1.773 9 X_G18:C80_X X 18 ? X 80 ? 19 1 1 A U 19 1_555 A A 79 1_555 -0.287 -0.150 0.297 3.521 3.730 4.458 10 X_U19:A79_X X 19 ? X 79 ? 20 1 1 A G 20 1_555 A U 78 1_555 -2.223 -0.637 -0.317 -3.096 -6.943 2.524 11 X_G20:U78_X X 20 ? X 78 ? 28 1 1 A C 21 1_555 A G 76 1_555 -0.245 -0.007 -0.151 0.731 -9.785 1.665 12 X_C21:G76_X X 21 ? X 76 ? 19 1 1 A G 22 1_555 A C 75 1_555 0.470 -0.287 0.137 -7.801 -23.490 -2.989 13 X_G22:C75_X X 22 ? X 75 ? 19 1 1 A U 23 1_555 A G 74 1_555 2.509 -0.765 0.142 -5.400 -5.984 -17.146 14 X_U23:G74_X X 23 ? X 74 ? 28 1 1 A C 62 1_555 A G 73 1_555 0.406 -0.168 0.155 0.203 3.448 6.620 15 X_C62:G73_X X 62 ? X 73 ? 19 1 1 A A 63 1_555 A U 72 1_555 0.430 -0.272 -0.084 8.591 -4.605 -10.709 16 X_A63:U72_X X 63 ? X 72 ? 20 1 1 A C 64 1_555 A G 71 1_555 -0.131 -0.168 -0.562 11.800 -11.452 1.466 17 X_C64:G71_X X 64 ? X 71 ? 19 1 1 A C 65 1_555 A G 70 1_555 -0.243 -0.190 -0.479 14.559 -3.403 -3.244 18 X_C65:G70_X X 65 ? X 70 ? 19 1 1 A G 66 1_555 A A 69 1_555 7.338 -5.437 1.107 19.881 -6.867 -42.273 19 X_G66:A69_X X 66 ? X 69 ? ? ? 1 A A 26 1_555 A A 60 1_555 -3.600 1.947 -0.695 -15.649 -11.309 -114.281 20 X_A26:A60_X X 26 ? X 60 ? 5 4 1 A G 27 1_555 A G 59 1_555 -3.598 1.015 0.217 12.237 -7.411 -62.563 21 X_G27:G59_X X 27 ? X 59 ? ? 1 1 A U 28 1_555 A C 58 1_555 -1.007 1.312 -0.792 11.090 -10.871 -52.659 22 X_U28:C58_X X 28 ? X 58 ? ? ? 1 A G 29 1_555 A A 57 1_555 -0.389 1.379 -0.489 15.798 -16.227 -4.578 23 X_G29:A57_X X 29 ? X 57 ? 8 1 1 A C 30 1_555 A G 56 1_555 -0.783 0.069 -0.863 29.759 -25.668 -5.428 24 X_C30:G56_X X 30 ? X 56 ? 19 1 1 A C 31 1_555 A G 55 1_555 0.712 -0.480 -0.268 11.868 -9.301 1.589 25 X_C31:G55_X X 31 ? X 55 ? 19 1 1 A U 32 1_555 A A 54 1_555 0.204 -0.252 -0.468 3.306 -4.836 3.786 26 X_U32:A54_X X 32 ? X 54 ? 20 1 1 A G 33 1_555 A C 53 1_555 -1.024 -0.227 -0.100 -2.558 -7.359 3.251 27 X_G33:C53_X X 33 ? X 53 ? 19 1 1 A A 34 1_555 A U 52 1_555 -0.330 -0.010 0.133 -3.983 -9.683 5.315 28 X_A34:U52_X X 34 ? X 52 ? 20 1 1 A G 35 1_555 A C 51 1_555 -0.410 -0.446 0.118 -5.288 -7.660 -2.568 29 X_G35:C51_X X 35 ? X 51 ? 19 1 1 A G 36 1_555 A C 50 1_555 -0.081 -0.416 -0.203 -7.522 -10.014 -4.990 30 X_G36:C50_X X 36 ? X 50 ? 19 1 1 A G 37 1_555 A U 49 1_555 -2.122 -0.531 -1.009 -27.150 -22.851 -8.067 31 X_G37:U49_X X 37 ? X 49 ? 28 1 1 A A 38 1_555 A U 47 1_555 -0.560 0.432 0.552 30.172 7.181 14.322 32 X_A38:U47_X X 38 ? X 47 ? ? 1 1 A C 39 1_555 A U 46 1_555 0.798 -1.362 0.129 -8.151 -1.122 24.495 33 X_C39:U46_X X 39 ? X 46 ? ? 1 1 A G 41 1_555 A C 94 1_555 -0.610 -0.334 -0.161 3.102 -6.872 -0.064 34 X_G41:C94_X X 41 ? X 94 ? 19 1 1 A G 42 1_555 A U 93 1_555 -1.585 0.001 0.425 -4.142 -12.220 12.254 35 X_G42:U93_X X 42 ? X 93 ? ? 1 1 A G 43 1_555 A C 92 1_555 -0.674 -0.510 -0.394 -8.702 -7.790 -4.875 36 X_G43:C92_X X 43 ? X 92 ? 19 1 1 A A 44 1_555 A U 91 1_555 1.248 0.308 -1.134 -27.731 -8.625 -19.531 37 X_A44:U91_X X 44 ? X 91 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 10 1_555 A G 88 1_555 A G 11 1_555 A C 87 1_555 0.900 -2.912 3.358 -9.136 5.503 31.972 -5.853 -2.924 2.493 9.660 16.037 33.660 1 XX_A10G11:C87G88_XX X 10 ? X 88 ? X 11 ? X 87 ? 1 A G 11 1_555 A C 87 1_555 A G 12 1_555 A C 86 1_555 -0.042 -1.776 3.564 -0.226 5.947 35.009 -3.823 0.035 3.229 9.799 0.373 35.496 2 XX_G11G12:C86C87_XX X 11 ? X 87 ? X 12 ? X 86 ? 1 A G 12 1_555 A C 86 1_555 A U 13 1_555 A A 85 1_555 -0.060 -1.809 3.162 0.158 -1.961 31.457 -2.971 0.140 3.266 -3.613 -0.291 31.517 3 XX_G12U13:A85C86_XX X 12 ? X 86 ? X 13 ? X 85 ? 1 A U 13 1_555 A A 85 1_555 A A 14 1_555 A U 84 1_555 -0.179 -1.287 3.169 -0.226 12.291 34.916 -3.533 0.254 2.586 19.743 0.363 36.953 4 XX_U13A14:U84A85_XX X 13 ? X 85 ? X 14 ? X 84 ? 1 A A 14 1_555 A U 84 1_555 A A 15 1_555 A U 83 1_555 -0.185 -1.420 2.837 -2.400 1.921 26.837 -3.458 -0.126 2.736 4.122 5.149 27.009 5 XX_A14A15:U83U84_XX X 14 ? X 84 ? X 15 ? X 83 ? 1 A A 15 1_555 A U 83 1_555 A A 16 1_555 A U 82 1_555 -0.158 -1.486 3.554 5.225 4.819 35.056 -3.153 1.052 3.271 7.900 -8.565 35.747 6 XX_A15A16:U82U83_XX X 15 ? X 83 ? X 16 ? X 82 ? 1 A A 16 1_555 A U 82 1_555 A C 17 1_555 A G 81 1_555 0.487 -1.115 3.190 -2.682 9.542 34.578 -3.070 -1.145 2.751 15.659 4.401 35.929 7 XX_A16C17:G81U82_XX X 16 ? X 82 ? X 17 ? X 81 ? 1 A C 17 1_555 A G 81 1_555 A G 18 1_555 A C 80 1_555 0.470 -1.770 3.003 2.062 7.673 28.005 -4.959 -0.551 2.469 15.466 -4.157 29.089 8 XX_C17G18:C80G81_XX X 17 ? X 81 ? X 18 ? X 80 ? 1 A G 18 1_555 A C 80 1_555 A U 19 1_555 A A 79 1_555 0.338 -1.693 3.201 -1.446 4.870 27.409 -4.601 -1.024 2.842 10.168 3.018 27.867 9 XX_G18U19:A79C80_XX X 18 ? X 80 ? X 19 ? X 79 ? 1 A U 19 1_555 A A 79 1_555 A G 20 1_555 A U 78 1_555 1.383 -2.571 3.389 3.284 6.839 23.550 -7.993 -2.274 2.710 16.225 -7.791 24.725 10 XX_U19G20:U78A79_XX X 19 ? X 79 ? X 20 ? X 78 ? 1 A G 20 1_555 A U 78 1_555 A C 21 1_555 A G 76 1_555 -0.501 -1.505 3.228 -2.672 -1.967 40.949 -1.931 0.423 3.319 -2.807 3.812 41.077 11 XX_G20C21:G76U78_XX X 20 ? X 78 ? X 21 ? X 76 ? 1 A C 21 1_555 A G 76 1_555 A G 22 1_555 A C 75 1_555 -0.350 -1.653 3.401 -2.250 16.990 38.996 -3.918 0.266 2.517 24.087 3.191 42.462 12 XX_C21G22:C75G76_XX X 21 ? X 76 ? X 22 ? X 75 ? 1 A G 22 1_555 A C 75 1_555 A U 23 1_555 A G 74 1_555 -0.543 -1.072 3.053 1.025 4.207 44.831 -1.746 0.794 2.933 5.501 -1.340 45.029 13 XX_G22U23:G74C75_XX X 22 ? X 75 ? X 23 ? X 74 ? 1 A U 23 1_555 A G 74 1_555 A C 62 1_555 A G 73 1_555 -1.490 -2.060 3.034 0.536 1.283 33.479 -3.765 2.664 2.932 2.226 -0.929 33.507 14 XX_U23C62:G73G74_XX X 23 ? X 74 ? X 62 ? X 73 ? 1 A C 62 1_555 A G 73 1_555 A A 63 1_555 A U 72 1_555 -1.166 -1.429 2.994 2.098 8.934 28.191 -4.378 2.652 2.350 17.756 -4.170 29.618 15 XX_C62A63:U72G73_XX X 62 ? X 73 ? X 63 ? X 72 ? 1 A A 63 1_555 A U 72 1_555 A C 64 1_555 A G 71 1_555 1.034 -1.164 3.166 3.726 13.319 31.310 -3.919 -1.218 2.576 23.308 -6.520 34.158 16 XX_A63C64:G71U72_XX X 63 ? X 72 ? X 64 ? X 71 ? 1 A C 64 1_555 A G 71 1_555 A C 65 1_555 A G 70 1_555 -0.172 -1.565 3.356 3.400 16.023 31.356 -4.760 0.745 2.283 27.428 -5.821 35.281 17 XX_C64C65:G70G71_XX X 64 ? X 71 ? X 65 ? X 70 ? 1 A C 65 1_555 A G 70 1_555 A G 66 1_555 A A 69 1_555 -2.983 -1.846 3.540 1.443 24.158 59.688 -2.771 2.877 2.631 23.266 -1.390 63.986 18 XX_C65G66:A69G70_XX X 65 ? X 70 ? X 66 ? X 69 ? 1 A A 26 1_555 A A 60 1_555 A G 27 1_555 A G 59 1_555 2.339 -1.958 2.878 -8.076 -0.878 34.204 -3.138 -4.850 2.330 -1.467 13.495 35.127 19 XX_A26G27:G59A60_XX X 26 ? X 60 ? X 27 ? X 59 ? 1 A G 27 1_555 A G 59 1_555 A U 28 1_555 A C 58 1_555 -0.022 -2.317 3.665 -0.924 10.555 40.666 -4.373 -0.069 2.999 14.885 1.303 41.967 20 XX_G27U28:C58G59_XX X 27 ? X 59 ? X 28 ? X 58 ? 1 A U 28 1_555 A C 58 1_555 A G 29 1_555 A A 57 1_555 1.937 -2.024 3.173 -4.665 6.625 29.533 -4.962 -4.464 2.347 12.698 8.940 30.601 21 XX_U28G29:A57C58_XX X 28 ? X 58 ? X 29 ? X 57 ? 1 A G 29 1_555 A A 57 1_555 A C 30 1_555 A G 56 1_555 0.582 -0.974 2.735 1.734 4.567 31.837 -2.424 -0.796 2.601 8.265 -3.138 32.200 22 XX_G29C30:G56A57_XX X 29 ? X 57 ? X 30 ? X 56 ? 1 A C 30 1_555 A G 56 1_555 A C 31 1_555 A G 55 1_555 0.267 -1.702 3.830 -3.936 15.673 43.032 -3.663 -0.714 3.032 20.523 5.154 45.831 23 XX_C30C31:G55G56_XX X 30 ? X 56 ? X 31 ? X 55 ? 1 A C 31 1_555 A G 55 1_555 A U 32 1_555 A A 54 1_555 -0.050 -1.811 3.313 1.896 15.607 30.190 -5.317 0.355 2.139 27.727 -3.368 33.954 24 XX_C31U32:A54G55_XX X 31 ? X 55 ? X 32 ? X 54 ? 1 A U 32 1_555 A A 54 1_555 A G 33 1_555 A C 53 1_555 -0.263 -1.798 3.346 -2.468 10.099 21.921 -7.197 -0.085 2.317 24.840 6.069 24.234 25 XX_U32G33:C53A54_XX X 32 ? X 54 ? X 33 ? X 53 ? 1 A G 33 1_555 A C 53 1_555 A A 34 1_555 A U 52 1_555 0.645 -1.513 3.313 -0.986 5.775 34.388 -3.377 -1.223 3.008 9.680 1.652 34.868 26 XX_G33A34:U52C53_XX X 33 ? X 53 ? X 34 ? X 52 ? 1 A A 34 1_555 A U 52 1_555 A G 35 1_555 A C 51 1_555 -0.092 -1.838 3.220 1.152 4.907 31.079 -4.252 0.372 2.897 9.084 -2.132 31.475 27 XX_A34G35:C51U52_XX X 34 ? X 52 ? X 35 ? X 51 ? 1 A G 35 1_555 A C 51 1_555 A G 36 1_555 A C 50 1_555 0.603 -2.147 3.385 5.128 2.654 29.700 -4.665 -0.094 3.241 5.117 -9.886 30.244 28 XX_G35G36:C50C51_XX X 35 ? X 51 ? X 36 ? X 50 ? 1 A G 36 1_555 A C 50 1_555 A G 37 1_555 A U 49 1_555 0.291 -2.124 3.849 4.113 14.839 27.013 -6.901 0.268 2.402 28.972 -8.031 31.023 29 XX_G36G37:U49C50_XX X 36 ? X 50 ? X 37 ? X 49 ? 1 A G 37 1_555 A U 49 1_555 A A 38 1_555 A U 47 1_555 1.397 -1.390 2.746 -31.263 -8.411 39.074 -1.181 -3.329 1.550 -10.641 39.553 50.336 30 XX_G37A38:U47U49_XX X 37 ? X 49 ? X 38 ? X 47 ? 1 A A 38 1_555 A U 47 1_555 A C 39 1_555 A U 46 1_555 0.246 -1.993 4.540 -1.601 14.250 36.400 -5.185 -0.616 3.531 21.800 2.449 39.033 31 XX_A38C39:U46U47_XX X 38 ? X 47 ? X 39 ? X 46 ? 1 A G 41 1_555 A C 94 1_555 A G 42 1_555 A U 93 1_555 0.344 -1.899 3.024 -7.173 10.261 37.687 -3.813 -1.215 2.347 15.375 10.748 39.640 32 XX_G41G42:U93C94_XX X 41 ? X 94 ? X 42 ? X 93 ? 1 A G 42 1_555 A U 93 1_555 A G 43 1_555 A C 92 1_555 -0.686 -1.874 3.261 4.639 7.994 35.262 -4.024 1.693 2.678 12.924 -7.499 36.415 33 XX_G42G43:C92U93_XX X 42 ? X 93 ? X 43 ? X 92 ? 1 A G 43 1_555 A C 92 1_555 A A 44 1_555 A U 91 1_555 -0.427 -2.192 3.991 5.228 13.892 39.490 -4.645 1.194 3.009 19.734 -7.426 42.083 34 XX_G43A44:U91C92_XX X 43 ? X 92 ? X 44 ? X 91 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3SUX _pdbx_initial_refinement_model.details 'pdb entry 3SUX' #