data_3TGT # _entry.id 3TGT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TGT RCSB RCSB067459 WWPDB D_1000067459 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3TGQ . unspecified PDB 3TGR . unspecified PDB 3TGS . unspecified PDB 3TIH . unspecified # _pdbx_database_status.entry_id 3TGT _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-17 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kwon, Y.D.' 1 'Kwong, P.D.' 2 # _citation.id primary _citation.title ;Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 5663 _citation.page_last 5668 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22451932 _citation.pdbx_database_id_DOI 10.1073/pnas.1112391109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwon, Y.D.' 1 ? primary 'Finzi, A.' 2 ? primary 'Wu, X.' 3 ? primary 'Dogo-Isonagie, C.' 4 ? primary 'Lee, L.K.' 5 ? primary 'Moore, L.R.' 6 ? primary 'Schmidt, S.D.' 7 ? primary 'Stuckey, J.' 8 ? primary 'Yang, Y.' 9 ? primary 'Zhou, T.' 10 ? primary 'Zhu, J.' 11 ? primary 'Vicic, D.A.' 12 ? primary 'Debnath, A.K.' 13 ? primary 'Shapiro, L.' 14 ? primary 'Bewley, C.A.' 15 ? primary 'Mascola, J.R.' 16 ? primary 'Sodroski, J.G.' 17 ? primary 'Kwong, P.D.' 18 ? # _cell.entry_id 3TGT _cell.length_a 63.556 _cell.length_b 66.944 _cell.length_c 88.029 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TGT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 clade A/E 93TH057 gp120' 39211.434 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 10 ? ? ? ? 3 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 4 water nat water 18.015 148 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLT GGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN LTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITM HHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGG ANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE ; _entity_poly.pdbx_seq_one_letter_code_can ;VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLT GGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN LTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITM HHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGG ANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 TRP n 1 3 LYS n 1 4 ASP n 1 5 ALA n 1 6 ASP n 1 7 THR n 1 8 THR n 1 9 LEU n 1 10 PHE n 1 11 CYS n 1 12 ALA n 1 13 SER n 1 14 ASP n 1 15 ALA n 1 16 LYS n 1 17 ALA n 1 18 HIS n 1 19 GLU n 1 20 THR n 1 21 GLU n 1 22 VAL n 1 23 HIS n 1 24 ASN n 1 25 VAL n 1 26 TRP n 1 27 ALA n 1 28 THR n 1 29 HIS n 1 30 ALA n 1 31 CYS n 1 32 VAL n 1 33 PRO n 1 34 THR n 1 35 ASP n 1 36 PRO n 1 37 ASN n 1 38 PRO n 1 39 GLN n 1 40 GLU n 1 41 ILE n 1 42 HIS n 1 43 LEU n 1 44 GLU n 1 45 ASN n 1 46 VAL n 1 47 THR n 1 48 GLU n 1 49 ASN n 1 50 PHE n 1 51 ASN n 1 52 MET n 1 53 TRP n 1 54 LYS n 1 55 ASN n 1 56 ASN n 1 57 MET n 1 58 VAL n 1 59 GLU n 1 60 GLN n 1 61 MET n 1 62 GLN n 1 63 GLU n 1 64 ASP n 1 65 VAL n 1 66 ILE n 1 67 SER n 1 68 LEU n 1 69 TRP n 1 70 ASP n 1 71 GLN n 1 72 SER n 1 73 LEU n 1 74 GLN n 1 75 PRO n 1 76 CYS n 1 77 VAL n 1 78 LYS n 1 79 LEU n 1 80 THR n 1 81 GLY n 1 82 GLY n 1 83 SER n 1 84 VAL n 1 85 ILE n 1 86 LYS n 1 87 GLN n 1 88 ALA n 1 89 CYS n 1 90 PRO n 1 91 LYS n 1 92 ILE n 1 93 SER n 1 94 PHE n 1 95 ASP n 1 96 PRO n 1 97 ILE n 1 98 PRO n 1 99 ILE n 1 100 HIS n 1 101 TYR n 1 102 CYS n 1 103 THR n 1 104 PRO n 1 105 ALA n 1 106 GLY n 1 107 TYR n 1 108 VAL n 1 109 ILE n 1 110 LEU n 1 111 LYS n 1 112 CYS n 1 113 ASN n 1 114 ASP n 1 115 LYS n 1 116 ASN n 1 117 PHE n 1 118 ASN n 1 119 GLY n 1 120 THR n 1 121 GLY n 1 122 PRO n 1 123 CYS n 1 124 LYS n 1 125 ASN n 1 126 VAL n 1 127 SER n 1 128 SER n 1 129 VAL n 1 130 GLN n 1 131 CYS n 1 132 THR n 1 133 HIS n 1 134 GLY n 1 135 ILE n 1 136 LYS n 1 137 PRO n 1 138 VAL n 1 139 VAL n 1 140 SER n 1 141 THR n 1 142 GLN n 1 143 LEU n 1 144 LEU n 1 145 LEU n 1 146 ASN n 1 147 GLY n 1 148 SER n 1 149 LEU n 1 150 ALA n 1 151 GLU n 1 152 GLU n 1 153 GLU n 1 154 ILE n 1 155 ILE n 1 156 ILE n 1 157 ARG n 1 158 SER n 1 159 GLU n 1 160 ASN n 1 161 LEU n 1 162 THR n 1 163 ASN n 1 164 ASN n 1 165 ALA n 1 166 LYS n 1 167 THR n 1 168 ILE n 1 169 ILE n 1 170 VAL n 1 171 HIS n 1 172 LEU n 1 173 ASN n 1 174 LYS n 1 175 SER n 1 176 VAL n 1 177 GLU n 1 178 ILE n 1 179 ASN n 1 180 CYS n 1 181 THR n 1 182 ARG n 1 183 PRO n 1 184 SER n 1 185 ASN n 1 186 GLY n 1 187 GLY n 1 188 SER n 1 189 GLY n 1 190 SER n 1 191 GLY n 1 192 GLY n 1 193 ASP n 1 194 ILE n 1 195 ARG n 1 196 LYS n 1 197 ALA n 1 198 TYR n 1 199 CYS n 1 200 GLU n 1 201 ILE n 1 202 ASN n 1 203 GLY n 1 204 THR n 1 205 LYS n 1 206 TRP n 1 207 ASN n 1 208 LYS n 1 209 VAL n 1 210 LEU n 1 211 LYS n 1 212 GLN n 1 213 VAL n 1 214 THR n 1 215 GLU n 1 216 LYS n 1 217 LEU n 1 218 LYS n 1 219 GLU n 1 220 HIS n 1 221 PHE n 1 222 ASN n 1 223 ASN n 1 224 LYS n 1 225 THR n 1 226 ILE n 1 227 ILE n 1 228 PHE n 1 229 GLN n 1 230 PRO n 1 231 PRO n 1 232 SER n 1 233 GLY n 1 234 GLY n 1 235 ASP n 1 236 LEU n 1 237 GLU n 1 238 ILE n 1 239 THR n 1 240 MET n 1 241 HIS n 1 242 HIS n 1 243 PHE n 1 244 ASN n 1 245 CYS n 1 246 ARG n 1 247 GLY n 1 248 GLU n 1 249 PHE n 1 250 PHE n 1 251 TYR n 1 252 CYS n 1 253 ASN n 1 254 THR n 1 255 THR n 1 256 GLN n 1 257 LEU n 1 258 PHE n 1 259 ASN n 1 260 ASN n 1 261 THR n 1 262 CYS n 1 263 ILE n 1 264 GLY n 1 265 ASN n 1 266 GLU n 1 267 THR n 1 268 MET n 1 269 LYS n 1 270 GLY n 1 271 CYS n 1 272 ASN n 1 273 GLY n 1 274 THR n 1 275 ILE n 1 276 THR n 1 277 LEU n 1 278 PRO n 1 279 CYS n 1 280 LYS n 1 281 ILE n 1 282 LYS n 1 283 GLN n 1 284 ILE n 1 285 ILE n 1 286 ASN n 1 287 MET n 1 288 TRP n 1 289 GLN n 1 290 GLY n 1 291 THR n 1 292 GLY n 1 293 GLN n 1 294 ALA n 1 295 MET n 1 296 TYR n 1 297 ALA n 1 298 PRO n 1 299 PRO n 1 300 ILE n 1 301 ASP n 1 302 GLY n 1 303 LYS n 1 304 ILE n 1 305 ASN n 1 306 CYS n 1 307 VAL n 1 308 SER n 1 309 ASN n 1 310 ILE n 1 311 THR n 1 312 GLY n 1 313 ILE n 1 314 LEU n 1 315 LEU n 1 316 THR n 1 317 ARG n 1 318 ASP n 1 319 GLY n 1 320 GLY n 1 321 ALA n 1 322 ASN n 1 323 ASN n 1 324 THR n 1 325 SER n 1 326 ASN n 1 327 GLU n 1 328 THR n 1 329 PHE n 1 330 ARG n 1 331 PRO n 1 332 GLY n 1 333 GLY n 1 334 GLY n 1 335 ASN n 1 336 ILE n 1 337 LYS n 1 338 ASP n 1 339 ASN n 1 340 TRP n 1 341 ARG n 1 342 SER n 1 343 GLU n 1 344 LEU n 1 345 TYR n 1 346 LYS n 1 347 TYR n 1 348 LYS n 1 349 VAL n 1 350 VAL n 1 351 GLN n 1 352 ILE n 1 353 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HIV-1 env' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK 293' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pVRC8400 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3TGT _struct_ref.pdbx_db_accession 3TGT _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TGT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 353 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3TGT _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 492 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 492 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TGT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '14% PEG 1500, 12% PEG 400, 0.1M HEPES, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2010-07-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TGT _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 30907 _reflns.number_all 32465 _reflns.percent_possible_obs 95.2 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 38.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.90 1.93 86.5 0.615 0.555 2.1 5.5 ? ? ? ? ? ? 1 2 1.93 1.97 89.9 0.498 0.452 2.7 5.8 ? ? ? ? ? ? 1 3 1.97 2.01 95.2 0.479 0.416 3.1 6.0 ? ? ? ? ? ? 1 4 2.01 2.05 97.8 0.419 0.368 3.7 6.4 ? ? ? ? ? ? 1 5 2.05 2.09 99.5 0.377 0.339 4.9 6.7 ? ? ? ? ? ? 1 6 2.09 2.14 99.8 0.327 0.269 6.3 6.9 ? ? ? ? ? ? 1 7 2.14 2.19 100.0 0.296 0.265 7.3 7.1 ? ? ? ? ? ? 1 8 2.19 2.25 100.0 0.257 0.226 9.6 7.2 ? ? ? ? ? ? 1 9 2.25 2.32 100.0 0.219 0.197 11.9 7.3 ? ? ? ? ? ? 1 10 2.32 2.39 99.9 0.190 0.172 15.5 7.3 ? ? ? ? ? ? 1 11 2.39 2.48 100.0 0.171 0.155 16.5 7.2 ? ? ? ? ? ? 1 12 2.48 2.58 100.0 0.144 0.137 20.9 7.2 ? ? ? ? ? ? 1 13 2.58 2.70 100.0 0.129 0.126 24.6 7.2 ? ? ? ? ? ? 1 14 2.70 2.84 99.9 0.115 0.116 28.7 7.1 ? ? ? ? ? ? 1 15 2.84 3.02 100.0 0.101 0.103 34.5 7.1 ? ? ? ? ? ? 1 16 3.02 3.25 99.9 0.091 0.093 41.9 6.9 ? ? ? ? ? ? 1 17 3.25 3.58 100.0 0.085 0.090 46.2 6.6 ? ? ? ? ? ? 1 18 3.58 4.09 99.9 0.075 0.081 51.3 6.3 ? ? ? ? ? ? 1 19 4.09 5.16 99.9 0.067 0.075 57.3 6.6 ? ? ? ? ? ? 1 20 5.16 50.00 98.1 0.053 0.062 57.9 6.4 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TGT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29250 _refine.ls_number_reflns_all 31824 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.11 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.571 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 91.91 _refine.ls_R_factor_obs 0.1910 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1890 _refine.ls_R_factor_R_free 0.2307 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.91 _refine.ls_number_reflns_R_free 1437 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 10.7220 _refine.aniso_B[2][2] -4.9969 _refine.aniso_B[3][3] -5.7251 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.329 _refine.solvent_model_param_bsol 36.441 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 23.44 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2677 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 155 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 2980 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 24.571 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2921 'X-RAY DIFFRACTION' ? f_angle_d 1.198 ? ? 3960 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.937 ? ? 1105 'X-RAY DIFFRACTION' ? f_chiral_restr 0.069 ? ? 462 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 492 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8676 1.9343 1817 0.2349 61.00 0.2307 . . 83 . . . . 'X-RAY DIFFRACTION' . 1.9343 2.0117 2475 0.2176 84.00 0.2760 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.0117 2.1032 2717 0.2093 92.00 0.3130 . . 166 . . . . 'X-RAY DIFFRACTION' . 2.1032 2.2140 2814 0.2029 94.00 0.2610 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.2140 2.3526 2858 0.1970 95.00 0.2560 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.3526 2.5341 2896 0.2037 97.00 0.2440 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.5341 2.7888 2953 0.1966 98.00 0.2692 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.7888 3.1916 3038 0.1973 99.00 0.2095 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.1916 4.0182 3055 0.1776 99.00 0.2326 . . 145 . . . . 'X-RAY DIFFRACTION' . 4.0182 24.5735 3190 0.1747 99.00 0.1972 . . 154 . . . . # _struct.entry_id 3TGT _struct.title 'Crystal structure of unliganded HIV-1 clade A/E strain 93TH057 gp120 core' _struct.pdbx_descriptor 'HIV-1 clade A/E 93TH057 gp120' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TGT _struct_keywords.text 'HIV-1 gp120, unliganded structure, clade A/E 93TH057, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 21 ? CYS A 31 ? GLU A 64 CYS A 74 1 ? 11 HELX_P HELX_P2 2 ASN A 55 ? LEU A 73 ? ASN A 98 LEU A 116 1 ? 19 HELX_P HELX_P3 3 GLY A 203 ? PHE A 221 ? GLY A 335 PHE A 353 1 ? 19 HELX_P HELX_P4 4 ASP A 235 ? MET A 240 ? ASP A 368 MET A 373 1 ? 6 HELX_P HELX_P5 5 THR A 254 ? ILE A 263 ? THR A 387 ILE A 396 5 ? 10 HELX_P HELX_P6 6 GLY A 320 ? THR A 324 ? GLY A 459 THR A 463 5 ? 5 HELX_P HELX_P7 7 ASN A 335 ? TYR A 345 ? ASN A 474 TYR A 484 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? 2.058 ? ? disulf2 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 119 A CYS 205 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 218 A CYS 247 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf4 disulf ? ? A CYS 112 SG ? ? ? 1_555 A CYS 123 SG ? ? A CYS 228 A CYS 239 1_555 ? ? ? ? ? ? ? 2.079 ? ? disulf5 disulf ? ? A CYS 180 SG ? ? ? 1_555 A CYS 199 SG ? ? A CYS 296 A CYS 331 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf6 disulf ? ? A CYS 245 SG ? ? ? 1_555 A CYS 306 SG ? ? A CYS 378 A CYS 445 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf7 disulf ? ? A CYS 252 SG ? ? ? 1_555 A CYS 279 SG ? ? A CYS 385 A CYS 418 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf8 disulf ? ? A CYS 262 SG ? ? ? 1_555 A CYS 271 SG ? ? A CYS 395 A CYS 410 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale one ? A ASN 118 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 234 A NAG 734 1_555 ? ? ? ? ? ? ? 1.309 ? N-Glycosylation covale2 covale one ? A ASN 125 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 241 A NAG 741 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale3 covale one ? A ASN 146 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 262 A NAG 762 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation covale4 covale one ? A ASN 160 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 276 A NAG 776 1_555 ? ? ? ? ? ? ? 1.491 ? N-Glycosylation covale5 covale one ? A ASN 173 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 289 A NAG 789 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale6 covale one ? A ASN 179 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 295 A NAG 795 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale7 covale one ? A ASN 202 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 334 A NAG 834 1_555 ? ? ? ? ? ? ? 1.434 ? N-Glycosylation covale8 covale one ? A ASN 253 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 386 A NAG 886 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale9 covale one ? A ASN 259 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 392 A NAG 892 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale10 covale one ? A ASN 309 ND2 ? ? ? 1_555 K NAG . C1 ? ? A ASN 448 A NAG 948 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? D ? 4 ? E ? 5 ? F ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 4 5 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel F 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 2 ? ASP A 4 ? TRP A 45 ASP A 47 A 2 TYR A 347 ? ILE A 352 ? TYR A 486 ILE A 491 A 3 TYR A 107 ? CYS A 112 ? TYR A 223 CYS A 228 A 4 VAL A 126 ? VAL A 129 ? VAL A 242 VAL A 245 A 5 GLU A 40 ? HIS A 42 ? GLU A 83 HIS A 85 B 1 VAL A 32 ? PRO A 33 ? VAL A 75 PRO A 76 B 2 PHE A 10 ? SER A 13 ? PHE A 53 SER A 56 B 3 HIS A 100 ? CYS A 102 ? HIS A 216 CYS A 218 C 1 GLU A 48 ? ASN A 51 ? GLU A 91 ASN A 94 C 2 THR A 120 ? CYS A 123 ? THR A 236 CYS A 239 D 1 SER A 83 ? LYS A 86 ? SER A 199 LYS A 202 D 2 VAL A 77 ? THR A 80 ? VAL A 120 THR A 123 D 3 GLN A 293 ? MET A 295 ? GLN A 432 MET A 434 D 4 ILE A 284 ? ASN A 286 ? ILE A 423 ASN A 425 E 1 LEU A 143 ? LEU A 145 ? LEU A 259 LEU A 261 E 2 ILE A 304 ? ARG A 317 ? ILE A 443 ARG A 456 E 3 ILE A 168 ? ARG A 182 ? ILE A 284 ARG A 298 E 4 ASN A 326 ? PRO A 331 ? ASN A 465 PRO A 470 E 5 THR A 225 ? PHE A 228 ? THR A 358 PHE A 361 F 1 ILE A 155 ? ARG A 157 ? ILE A 271 ARG A 273 F 2 ILE A 168 ? ARG A 182 ? ILE A 284 ARG A 298 F 3 ILE A 304 ? ARG A 317 ? ILE A 443 ARG A 456 F 4 LYS A 196 ? ASN A 202 ? LYS A 328 ASN A 334 F 5 THR A 274 ? ILE A 281 ? THR A 413 ILE A 420 F 6 GLU A 248 ? CYS A 252 ? GLU A 381 CYS A 385 F 7 HIS A 241 ? CYS A 245 ? HIS A 374 CYS A 378 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 3 ? N LYS A 46 O GLN A 351 ? O GLN A 490 A 2 3 O LYS A 348 ? O LYS A 487 N LEU A 110 ? N LEU A 226 A 3 4 N LYS A 111 ? N LYS A 227 O SER A 127 ? O SER A 243 A 4 5 O SER A 128 ? O SER A 244 N ILE A 41 ? N ILE A 84 B 1 2 O VAL A 32 ? O VAL A 75 N CYS A 11 ? N CYS A 54 B 2 3 N ALA A 12 ? N ALA A 55 O HIS A 100 ? O HIS A 216 C 1 2 N PHE A 50 ? N PHE A 93 O GLY A 121 ? O GLY A 237 D 1 2 O SER A 83 ? O SER A 199 N THR A 80 ? N THR A 123 D 2 3 N LEU A 79 ? N LEU A 122 O GLN A 293 ? O GLN A 432 D 3 4 O ALA A 294 ? O ALA A 433 N ILE A 285 ? N ILE A 424 E 1 2 N LEU A 144 ? N LEU A 260 O THR A 311 ? O THR A 450 E 2 3 O ILE A 313 ? O ILE A 452 N VAL A 170 ? N VAL A 286 E 4 5 O PHE A 329 ? O PHE A 468 N ILE A 227 ? N ILE A 360 F 1 2 N ILE A 155 ? N ILE A 271 O HIS A 171 ? O HIS A 287 F 2 3 N VAL A 170 ? N VAL A 286 O ILE A 313 ? O ILE A 452 F 4 5 N ILE A 201 ? N ILE A 333 O ILE A 275 ? O ILE A 414 F 5 6 O LYS A 280 ? O LYS A 419 N TYR A 251 ? N TYR A 384 F 6 7 O PHE A 250 ? O PHE A 383 N PHE A 243 ? N PHE A 376 # _atom_sites.entry_id 3TGT _atom_sites.fract_transf_matrix[1][1] 0.015734 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014938 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011360 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 44 44 VAL VAL A . n A 1 2 TRP 2 45 45 TRP TRP A . n A 1 3 LYS 3 46 46 LYS LYS A . n A 1 4 ASP 4 47 47 ASP ASP A . n A 1 5 ALA 5 48 48 ALA ALA A . n A 1 6 ASP 6 49 49 ASP ASP A . n A 1 7 THR 7 50 50 THR THR A . n A 1 8 THR 8 51 51 THR THR A . n A 1 9 LEU 9 52 52 LEU LEU A . n A 1 10 PHE 10 53 53 PHE PHE A . n A 1 11 CYS 11 54 54 CYS CYS A . n A 1 12 ALA 12 55 55 ALA ALA A . n A 1 13 SER 13 56 56 SER SER A . n A 1 14 ASP 14 57 57 ASP ASP A . n A 1 15 ALA 15 58 58 ALA ALA A . n A 1 16 LYS 16 59 59 LYS LYS A . n A 1 17 ALA 17 60 60 ALA ALA A . n A 1 18 HIS 18 61 61 HIS HIS A . n A 1 19 GLU 19 62 62 GLU GLU A . n A 1 20 THR 20 63 63 THR THR A . n A 1 21 GLU 21 64 64 GLU GLU A . n A 1 22 VAL 22 65 65 VAL VAL A . n A 1 23 HIS 23 66 66 HIS HIS A . n A 1 24 ASN 24 67 67 ASN ASN A . n A 1 25 VAL 25 68 68 VAL VAL A . n A 1 26 TRP 26 69 69 TRP TRP A . n A 1 27 ALA 27 70 70 ALA ALA A . n A 1 28 THR 28 71 71 THR THR A . n A 1 29 HIS 29 72 72 HIS HIS A . n A 1 30 ALA 30 73 73 ALA ALA A . n A 1 31 CYS 31 74 74 CYS CYS A . n A 1 32 VAL 32 75 75 VAL VAL A . n A 1 33 PRO 33 76 76 PRO PRO A . n A 1 34 THR 34 77 77 THR THR A . n A 1 35 ASP 35 78 78 ASP ASP A . n A 1 36 PRO 36 79 79 PRO PRO A . n A 1 37 ASN 37 80 80 ASN ASN A . n A 1 38 PRO 38 81 81 PRO PRO A . n A 1 39 GLN 39 82 82 GLN GLN A . n A 1 40 GLU 40 83 83 GLU GLU A . n A 1 41 ILE 41 84 84 ILE ILE A . n A 1 42 HIS 42 85 85 HIS HIS A . n A 1 43 LEU 43 86 86 LEU LEU A . n A 1 44 GLU 44 87 87 GLU GLU A . n A 1 45 ASN 45 88 88 ASN ASN A . n A 1 46 VAL 46 89 89 VAL VAL A . n A 1 47 THR 47 90 90 THR THR A . n A 1 48 GLU 48 91 91 GLU GLU A . n A 1 49 ASN 49 92 92 ASN ASN A . n A 1 50 PHE 50 93 93 PHE PHE A . n A 1 51 ASN 51 94 94 ASN ASN A . n A 1 52 MET 52 95 95 MET MET A . n A 1 53 TRP 53 96 96 TRP TRP A . n A 1 54 LYS 54 97 97 LYS LYS A . n A 1 55 ASN 55 98 98 ASN ASN A . n A 1 56 ASN 56 99 99 ASN ASN A . n A 1 57 MET 57 100 100 MET MET A . n A 1 58 VAL 58 101 101 VAL VAL A . n A 1 59 GLU 59 102 102 GLU GLU A . n A 1 60 GLN 60 103 103 GLN GLN A . n A 1 61 MET 61 104 104 MET MET A . n A 1 62 GLN 62 105 105 GLN GLN A . n A 1 63 GLU 63 106 106 GLU GLU A . n A 1 64 ASP 64 107 107 ASP ASP A . n A 1 65 VAL 65 108 108 VAL VAL A . n A 1 66 ILE 66 109 109 ILE ILE A . n A 1 67 SER 67 110 110 SER SER A . n A 1 68 LEU 68 111 111 LEU LEU A . n A 1 69 TRP 69 112 112 TRP TRP A . n A 1 70 ASP 70 113 113 ASP ASP A . n A 1 71 GLN 71 114 114 GLN GLN A . n A 1 72 SER 72 115 115 SER SER A . n A 1 73 LEU 73 116 116 LEU LEU A . n A 1 74 GLN 74 117 117 GLN GLN A . n A 1 75 PRO 75 118 118 PRO PRO A . n A 1 76 CYS 76 119 119 CYS CYS A . n A 1 77 VAL 77 120 120 VAL VAL A . n A 1 78 LYS 78 121 121 LYS LYS A . n A 1 79 LEU 79 122 122 LEU LEU A . n A 1 80 THR 80 123 123 THR THR A . n A 1 81 GLY 81 124 124 GLY GLY A . n A 1 82 GLY 82 198 198 GLY GLY A . n A 1 83 SER 83 199 199 SER SER A . n A 1 84 VAL 84 200 200 VAL VAL A . n A 1 85 ILE 85 201 201 ILE ILE A . n A 1 86 LYS 86 202 202 LYS LYS A . n A 1 87 GLN 87 203 203 GLN GLN A . n A 1 88 ALA 88 204 204 ALA ALA A . n A 1 89 CYS 89 205 205 CYS CYS A . n A 1 90 PRO 90 206 206 PRO PRO A . n A 1 91 LYS 91 207 207 LYS LYS A . n A 1 92 ILE 92 208 208 ILE ILE A . n A 1 93 SER 93 209 209 SER SER A . n A 1 94 PHE 94 210 210 PHE PHE A . n A 1 95 ASP 95 211 211 ASP ASP A . n A 1 96 PRO 96 212 212 PRO PRO A . n A 1 97 ILE 97 213 213 ILE ILE A . n A 1 98 PRO 98 214 214 PRO PRO A . n A 1 99 ILE 99 215 215 ILE ILE A . n A 1 100 HIS 100 216 216 HIS HIS A . n A 1 101 TYR 101 217 217 TYR TYR A . n A 1 102 CYS 102 218 218 CYS CYS A . n A 1 103 THR 103 219 219 THR THR A . n A 1 104 PRO 104 220 220 PRO PRO A . n A 1 105 ALA 105 221 221 ALA ALA A . n A 1 106 GLY 106 222 222 GLY GLY A . n A 1 107 TYR 107 223 223 TYR TYR A . n A 1 108 VAL 108 224 224 VAL VAL A . n A 1 109 ILE 109 225 225 ILE ILE A . n A 1 110 LEU 110 226 226 LEU LEU A . n A 1 111 LYS 111 227 227 LYS LYS A . n A 1 112 CYS 112 228 228 CYS CYS A . n A 1 113 ASN 113 229 229 ASN ASN A . n A 1 114 ASP 114 230 230 ASP ASP A . n A 1 115 LYS 115 231 231 LYS LYS A . n A 1 116 ASN 116 232 232 ASN ASN A . n A 1 117 PHE 117 233 233 PHE PHE A . n A 1 118 ASN 118 234 234 ASN ASN A . n A 1 119 GLY 119 235 235 GLY GLY A . n A 1 120 THR 120 236 236 THR THR A . n A 1 121 GLY 121 237 237 GLY GLY A . n A 1 122 PRO 122 238 238 PRO PRO A . n A 1 123 CYS 123 239 239 CYS CYS A . n A 1 124 LYS 124 240 240 LYS LYS A . n A 1 125 ASN 125 241 241 ASN ASN A . n A 1 126 VAL 126 242 242 VAL VAL A . n A 1 127 SER 127 243 243 SER SER A . n A 1 128 SER 128 244 244 SER SER A . n A 1 129 VAL 129 245 245 VAL VAL A . n A 1 130 GLN 130 246 246 GLN GLN A . n A 1 131 CYS 131 247 247 CYS CYS A . n A 1 132 THR 132 248 248 THR THR A . n A 1 133 HIS 133 249 249 HIS HIS A . n A 1 134 GLY 134 250 250 GLY GLY A . n A 1 135 ILE 135 251 251 ILE ILE A . n A 1 136 LYS 136 252 252 LYS LYS A . n A 1 137 PRO 137 253 253 PRO PRO A . n A 1 138 VAL 138 254 254 VAL VAL A . n A 1 139 VAL 139 255 255 VAL VAL A . n A 1 140 SER 140 256 256 SER SER A . n A 1 141 THR 141 257 257 THR THR A . n A 1 142 GLN 142 258 258 GLN GLN A . n A 1 143 LEU 143 259 259 LEU LEU A . n A 1 144 LEU 144 260 260 LEU LEU A . n A 1 145 LEU 145 261 261 LEU LEU A . n A 1 146 ASN 146 262 262 ASN ASN A . n A 1 147 GLY 147 263 263 GLY GLY A . n A 1 148 SER 148 264 264 SER SER A . n A 1 149 LEU 149 265 265 LEU LEU A . n A 1 150 ALA 150 266 266 ALA ALA A . n A 1 151 GLU 151 267 267 GLU GLU A . n A 1 152 GLU 152 268 268 GLU GLU A . n A 1 153 GLU 153 269 269 GLU GLU A . n A 1 154 ILE 154 270 270 ILE ILE A . n A 1 155 ILE 155 271 271 ILE ILE A . n A 1 156 ILE 156 272 272 ILE ILE A . n A 1 157 ARG 157 273 273 ARG ARG A . n A 1 158 SER 158 274 274 SER SER A . n A 1 159 GLU 159 275 275 GLU GLU A . n A 1 160 ASN 160 276 276 ASN ASN A . n A 1 161 LEU 161 277 277 LEU LEU A . n A 1 162 THR 162 278 278 THR THR A . n A 1 163 ASN 163 279 279 ASN ASN A . n A 1 164 ASN 164 280 280 ASN ASN A . n A 1 165 ALA 165 281 281 ALA ALA A . n A 1 166 LYS 166 282 282 LYS LYS A . n A 1 167 THR 167 283 283 THR THR A . n A 1 168 ILE 168 284 284 ILE ILE A . n A 1 169 ILE 169 285 285 ILE ILE A . n A 1 170 VAL 170 286 286 VAL VAL A . n A 1 171 HIS 171 287 287 HIS HIS A . n A 1 172 LEU 172 288 288 LEU LEU A . n A 1 173 ASN 173 289 289 ASN ASN A . n A 1 174 LYS 174 290 290 LYS LYS A . n A 1 175 SER 175 291 291 SER SER A . n A 1 176 VAL 176 292 292 VAL VAL A . n A 1 177 GLU 177 293 293 GLU GLU A . n A 1 178 ILE 178 294 294 ILE ILE A . n A 1 179 ASN 179 295 295 ASN ASN A . n A 1 180 CYS 180 296 296 CYS CYS A . n A 1 181 THR 181 297 297 THR THR A . n A 1 182 ARG 182 298 298 ARG ARG A . n A 1 183 PRO 183 299 299 PRO PRO A . n A 1 184 SER 184 300 300 SER SER A . n A 1 185 ASN 185 301 301 ASN ASN A . n A 1 186 GLY 186 318 ? ? ? A . n A 1 187 GLY 187 319 ? ? ? A . n A 1 188 SER 188 320 ? ? ? A . n A 1 189 GLY 189 321 ? ? ? A . n A 1 190 SER 190 322 ? ? ? A . n A 1 191 GLY 191 323 ? ? ? A . n A 1 192 GLY 192 324 324 GLY GLY A . n A 1 193 ASP 193 325 325 ASP ASP A . n A 1 194 ILE 194 326 326 ILE ILE A . n A 1 195 ARG 195 327 327 ARG ARG A . n A 1 196 LYS 196 328 328 LYS LYS A . n A 1 197 ALA 197 329 329 ALA ALA A . n A 1 198 TYR 198 330 330 TYR TYR A . n A 1 199 CYS 199 331 331 CYS CYS A . n A 1 200 GLU 200 332 332 GLU GLU A . n A 1 201 ILE 201 333 333 ILE ILE A . n A 1 202 ASN 202 334 334 ASN ASN A . n A 1 203 GLY 203 335 335 GLY GLY A . n A 1 204 THR 204 336 336 THR THR A . n A 1 205 LYS 205 337 337 LYS LYS A . n A 1 206 TRP 206 338 338 TRP TRP A . n A 1 207 ASN 207 339 339 ASN ASN A . n A 1 208 LYS 208 340 340 LYS LYS A . n A 1 209 VAL 209 341 341 VAL VAL A . n A 1 210 LEU 210 342 342 LEU LEU A . n A 1 211 LYS 211 343 343 LYS LYS A . n A 1 212 GLN 212 344 344 GLN GLN A . n A 1 213 VAL 213 345 345 VAL VAL A . n A 1 214 THR 214 346 346 THR THR A . n A 1 215 GLU 215 347 347 GLU GLU A . n A 1 216 LYS 216 348 348 LYS LYS A . n A 1 217 LEU 217 349 349 LEU LEU A . n A 1 218 LYS 218 350 350 LYS LYS A . n A 1 219 GLU 219 351 351 GLU GLU A . n A 1 220 HIS 220 352 352 HIS HIS A . n A 1 221 PHE 221 353 353 PHE PHE A . n A 1 222 ASN 222 354 354 ASN ASN A . n A 1 223 ASN 223 355 355 ASN ASN A . n A 1 224 LYS 224 357 357 LYS LYS A . n A 1 225 THR 225 358 358 THR THR A . n A 1 226 ILE 226 359 359 ILE ILE A . n A 1 227 ILE 227 360 360 ILE ILE A . n A 1 228 PHE 228 361 361 PHE PHE A . n A 1 229 GLN 229 362 362 GLN GLN A . n A 1 230 PRO 230 363 363 PRO PRO A . n A 1 231 PRO 231 364 364 PRO PRO A . n A 1 232 SER 232 365 365 SER SER A . n A 1 233 GLY 233 366 366 GLY GLY A . n A 1 234 GLY 234 367 367 GLY GLY A . n A 1 235 ASP 235 368 368 ASP ASP A . n A 1 236 LEU 236 369 369 LEU LEU A . n A 1 237 GLU 237 370 370 GLU GLU A . n A 1 238 ILE 238 371 371 ILE ILE A . n A 1 239 THR 239 372 372 THR THR A . n A 1 240 MET 240 373 373 MET MET A . n A 1 241 HIS 241 374 374 HIS HIS A . n A 1 242 HIS 242 375 375 HIS HIS A . n A 1 243 PHE 243 376 376 PHE PHE A . n A 1 244 ASN 244 377 377 ASN ASN A . n A 1 245 CYS 245 378 378 CYS CYS A . n A 1 246 ARG 246 379 379 ARG ARG A . n A 1 247 GLY 247 380 380 GLY GLY A . n A 1 248 GLU 248 381 381 GLU GLU A . n A 1 249 PHE 249 382 382 PHE PHE A . n A 1 250 PHE 250 383 383 PHE PHE A . n A 1 251 TYR 251 384 384 TYR TYR A . n A 1 252 CYS 252 385 385 CYS CYS A . n A 1 253 ASN 253 386 386 ASN ASN A . n A 1 254 THR 254 387 387 THR THR A . n A 1 255 THR 255 388 388 THR THR A . n A 1 256 GLN 256 389 389 GLN GLN A . n A 1 257 LEU 257 390 390 LEU LEU A . n A 1 258 PHE 258 391 391 PHE PHE A . n A 1 259 ASN 259 392 392 ASN ASN A . n A 1 260 ASN 260 393 393 ASN ASN A . n A 1 261 THR 261 394 394 THR THR A . n A 1 262 CYS 262 395 395 CYS CYS A . n A 1 263 ILE 263 396 396 ILE ILE A . n A 1 264 GLY 264 403 ? ? ? A . n A 1 265 ASN 265 404 ? ? ? A . n A 1 266 GLU 266 405 ? ? ? A . n A 1 267 THR 267 406 ? ? ? A . n A 1 268 MET 268 407 ? ? ? A . n A 1 269 LYS 269 408 408 LYS LYS A . n A 1 270 GLY 270 409 409 GLY GLY A . n A 1 271 CYS 271 410 410 CYS CYS A . n A 1 272 ASN 272 411 411 ASN ASN A . n A 1 273 GLY 273 412 412 GLY GLY A . n A 1 274 THR 274 413 413 THR THR A . n A 1 275 ILE 275 414 414 ILE ILE A . n A 1 276 THR 276 415 415 THR THR A . n A 1 277 LEU 277 416 416 LEU LEU A . n A 1 278 PRO 278 417 417 PRO PRO A . n A 1 279 CYS 279 418 418 CYS CYS A . n A 1 280 LYS 280 419 419 LYS LYS A . n A 1 281 ILE 281 420 420 ILE ILE A . n A 1 282 LYS 282 421 421 LYS LYS A . n A 1 283 GLN 283 422 422 GLN GLN A . n A 1 284 ILE 284 423 423 ILE ILE A . n A 1 285 ILE 285 424 424 ILE ILE A . n A 1 286 ASN 286 425 425 ASN ASN A . n A 1 287 MET 287 426 426 MET MET A . n A 1 288 TRP 288 427 427 TRP TRP A . n A 1 289 GLN 289 428 428 GLN GLN A . n A 1 290 GLY 290 429 429 GLY GLY A . n A 1 291 THR 291 430 430 THR THR A . n A 1 292 GLY 292 431 431 GLY GLY A . n A 1 293 GLN 293 432 432 GLN GLN A . n A 1 294 ALA 294 433 433 ALA ALA A . n A 1 295 MET 295 434 434 MET MET A . n A 1 296 TYR 296 435 435 TYR TYR A . n A 1 297 ALA 297 436 436 ALA ALA A . n A 1 298 PRO 298 437 437 PRO PRO A . n A 1 299 PRO 299 438 438 PRO PRO A . n A 1 300 ILE 300 439 439 ILE ILE A . n A 1 301 ASP 301 440 440 ASP ASP A . n A 1 302 GLY 302 441 441 GLY GLY A . n A 1 303 LYS 303 442 442 LYS LYS A . n A 1 304 ILE 304 443 443 ILE ILE A . n A 1 305 ASN 305 444 444 ASN ASN A . n A 1 306 CYS 306 445 445 CYS CYS A . n A 1 307 VAL 307 446 446 VAL VAL A . n A 1 308 SER 308 447 447 SER SER A . n A 1 309 ASN 309 448 448 ASN ASN A . n A 1 310 ILE 310 449 449 ILE ILE A . n A 1 311 THR 311 450 450 THR THR A . n A 1 312 GLY 312 451 451 GLY GLY A . n A 1 313 ILE 313 452 452 ILE ILE A . n A 1 314 LEU 314 453 453 LEU LEU A . n A 1 315 LEU 315 454 454 LEU LEU A . n A 1 316 THR 316 455 455 THR THR A . n A 1 317 ARG 317 456 456 ARG ARG A . n A 1 318 ASP 318 457 457 ASP ASP A . n A 1 319 GLY 319 458 458 GLY GLY A . n A 1 320 GLY 320 459 459 GLY GLY A . n A 1 321 ALA 321 460 460 ALA ALA A . n A 1 322 ASN 322 461 461 ASN ASN A . n A 1 323 ASN 323 462 462 ASN ASN A . n A 1 324 THR 324 463 463 THR THR A . n A 1 325 SER 325 464 464 SER SER A . n A 1 326 ASN 326 465 465 ASN ASN A . n A 1 327 GLU 327 466 466 GLU GLU A . n A 1 328 THR 328 467 467 THR THR A . n A 1 329 PHE 329 468 468 PHE PHE A . n A 1 330 ARG 330 469 469 ARG ARG A . n A 1 331 PRO 331 470 470 PRO PRO A . n A 1 332 GLY 332 471 471 GLY GLY A . n A 1 333 GLY 333 472 472 GLY GLY A . n A 1 334 GLY 334 473 473 GLY GLY A . n A 1 335 ASN 335 474 474 ASN ASN A . n A 1 336 ILE 336 475 475 ILE ILE A . n A 1 337 LYS 337 476 476 LYS LYS A . n A 1 338 ASP 338 477 477 ASP ASP A . n A 1 339 ASN 339 478 478 ASN ASN A . n A 1 340 TRP 340 479 479 TRP TRP A . n A 1 341 ARG 341 480 480 ARG ARG A . n A 1 342 SER 342 481 481 SER SER A . n A 1 343 GLU 343 482 482 GLU GLU A . n A 1 344 LEU 344 483 483 LEU LEU A . n A 1 345 TYR 345 484 484 TYR TYR A . n A 1 346 LYS 346 485 485 LYS LYS A . n A 1 347 TYR 347 486 486 TYR TYR A . n A 1 348 LYS 348 487 487 LYS LYS A . n A 1 349 VAL 349 488 488 VAL VAL A . n A 1 350 VAL 350 489 489 VAL VAL A . n A 1 351 GLN 351 490 490 GLN GLN A . n A 1 352 ILE 352 491 491 ILE ILE A . n A 1 353 GLU 353 492 492 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 734 734 NAG NAG A . C 2 NAG 1 741 741 NAG NAG A . D 2 NAG 1 762 762 NAG NAG A . E 2 NAG 1 776 776 NAG NAG A . F 2 NAG 1 789 789 NAG NAG A . G 2 NAG 1 795 795 NAG NAG A . H 2 NAG 1 834 834 NAG NAG A . I 2 NAG 1 886 886 NAG NAG A . J 2 NAG 1 892 892 NAG NAG A . K 2 NAG 1 948 948 NAG NAG A . L 3 EPE 1 1 1 EPE EPE A . M 4 HOH 1 2 2 HOH HOH A . M 4 HOH 2 3 3 HOH HOH A . M 4 HOH 3 4 4 HOH HOH A . M 4 HOH 4 5 5 HOH HOH A . M 4 HOH 5 6 6 HOH HOH A . M 4 HOH 6 7 7 HOH HOH A . M 4 HOH 7 8 8 HOH HOH A . M 4 HOH 8 9 9 HOH HOH A . M 4 HOH 9 10 10 HOH HOH A . M 4 HOH 10 11 11 HOH HOH A . M 4 HOH 11 12 12 HOH HOH A . M 4 HOH 12 13 13 HOH HOH A . M 4 HOH 13 14 14 HOH HOH A . M 4 HOH 14 15 15 HOH HOH A . M 4 HOH 15 16 16 HOH HOH A . M 4 HOH 16 17 17 HOH HOH A . M 4 HOH 17 18 18 HOH HOH A . M 4 HOH 18 19 19 HOH HOH A . M 4 HOH 19 20 20 HOH HOH A . M 4 HOH 20 21 21 HOH HOH A . M 4 HOH 21 22 22 HOH HOH A . M 4 HOH 22 23 23 HOH HOH A . M 4 HOH 23 24 24 HOH HOH A . M 4 HOH 24 25 25 HOH HOH A . M 4 HOH 25 26 26 HOH HOH A . M 4 HOH 26 27 27 HOH HOH A . M 4 HOH 27 28 28 HOH HOH A . M 4 HOH 28 29 29 HOH HOH A . M 4 HOH 29 30 30 HOH HOH A . M 4 HOH 30 31 31 HOH HOH A . M 4 HOH 31 32 32 HOH HOH A . M 4 HOH 32 33 33 HOH HOH A . M 4 HOH 33 34 34 HOH HOH A . M 4 HOH 34 35 35 HOH HOH A . M 4 HOH 35 36 36 HOH HOH A . M 4 HOH 36 37 37 HOH HOH A . M 4 HOH 37 38 38 HOH HOH A . M 4 HOH 38 39 39 HOH HOH A . M 4 HOH 39 40 40 HOH HOH A . M 4 HOH 40 41 41 HOH HOH A . M 4 HOH 41 42 42 HOH HOH A . M 4 HOH 42 43 43 HOH HOH A . M 4 HOH 43 125 125 HOH HOH A . M 4 HOH 44 126 126 HOH HOH A . M 4 HOH 45 127 127 HOH HOH A . M 4 HOH 46 128 128 HOH HOH A . M 4 HOH 47 129 129 HOH HOH A . M 4 HOH 48 130 130 HOH HOH A . M 4 HOH 49 131 131 HOH HOH A . M 4 HOH 50 132 132 HOH HOH A . M 4 HOH 51 133 133 HOH HOH A . M 4 HOH 52 134 134 HOH HOH A . M 4 HOH 53 135 135 HOH HOH A . M 4 HOH 54 136 136 HOH HOH A . M 4 HOH 55 137 137 HOH HOH A . M 4 HOH 56 138 138 HOH HOH A . M 4 HOH 57 139 139 HOH HOH A . M 4 HOH 58 140 140 HOH HOH A . M 4 HOH 59 141 141 HOH HOH A . M 4 HOH 60 142 142 HOH HOH A . M 4 HOH 61 143 143 HOH HOH A . M 4 HOH 62 144 144 HOH HOH A . M 4 HOH 63 145 145 HOH HOH A . M 4 HOH 64 146 146 HOH HOH A . M 4 HOH 65 147 147 HOH HOH A . M 4 HOH 66 148 148 HOH HOH A . M 4 HOH 67 493 1 HOH HOH A . M 4 HOH 68 494 44 HOH HOH A . M 4 HOH 69 495 45 HOH HOH A . M 4 HOH 70 496 46 HOH HOH A . M 4 HOH 71 497 47 HOH HOH A . M 4 HOH 72 498 48 HOH HOH A . M 4 HOH 73 499 49 HOH HOH A . M 4 HOH 74 500 50 HOH HOH A . M 4 HOH 75 501 51 HOH HOH A . M 4 HOH 76 502 52 HOH HOH A . M 4 HOH 77 503 53 HOH HOH A . M 4 HOH 78 504 54 HOH HOH A . M 4 HOH 79 505 55 HOH HOH A . M 4 HOH 80 506 56 HOH HOH A . M 4 HOH 81 507 57 HOH HOH A . M 4 HOH 82 508 58 HOH HOH A . M 4 HOH 83 509 59 HOH HOH A . M 4 HOH 84 510 60 HOH HOH A . M 4 HOH 85 511 61 HOH HOH A . M 4 HOH 86 512 62 HOH HOH A . M 4 HOH 87 513 63 HOH HOH A . M 4 HOH 88 514 64 HOH HOH A . M 4 HOH 89 515 65 HOH HOH A . M 4 HOH 90 516 66 HOH HOH A . M 4 HOH 91 517 67 HOH HOH A . M 4 HOH 92 518 68 HOH HOH A . M 4 HOH 93 519 69 HOH HOH A . M 4 HOH 94 520 70 HOH HOH A . M 4 HOH 95 521 71 HOH HOH A . M 4 HOH 96 522 72 HOH HOH A . M 4 HOH 97 523 73 HOH HOH A . M 4 HOH 98 524 74 HOH HOH A . M 4 HOH 99 525 75 HOH HOH A . M 4 HOH 100 526 76 HOH HOH A . M 4 HOH 101 527 77 HOH HOH A . M 4 HOH 102 528 78 HOH HOH A . M 4 HOH 103 529 79 HOH HOH A . M 4 HOH 104 530 80 HOH HOH A . M 4 HOH 105 531 81 HOH HOH A . M 4 HOH 106 532 82 HOH HOH A . M 4 HOH 107 533 83 HOH HOH A . M 4 HOH 108 534 84 HOH HOH A . M 4 HOH 109 535 85 HOH HOH A . M 4 HOH 110 536 86 HOH HOH A . M 4 HOH 111 537 87 HOH HOH A . M 4 HOH 112 538 88 HOH HOH A . M 4 HOH 113 539 89 HOH HOH A . M 4 HOH 114 540 90 HOH HOH A . M 4 HOH 115 541 91 HOH HOH A . M 4 HOH 116 542 92 HOH HOH A . M 4 HOH 117 543 93 HOH HOH A . M 4 HOH 118 544 94 HOH HOH A . M 4 HOH 119 545 95 HOH HOH A . M 4 HOH 120 546 96 HOH HOH A . M 4 HOH 121 547 97 HOH HOH A . M 4 HOH 122 548 98 HOH HOH A . M 4 HOH 123 549 99 HOH HOH A . M 4 HOH 124 550 100 HOH HOH A . M 4 HOH 125 551 101 HOH HOH A . M 4 HOH 126 552 102 HOH HOH A . M 4 HOH 127 553 103 HOH HOH A . M 4 HOH 128 554 104 HOH HOH A . M 4 HOH 129 555 105 HOH HOH A . M 4 HOH 130 556 106 HOH HOH A . M 4 HOH 131 557 107 HOH HOH A . M 4 HOH 132 558 108 HOH HOH A . M 4 HOH 133 559 109 HOH HOH A . M 4 HOH 134 560 110 HOH HOH A . M 4 HOH 135 561 111 HOH HOH A . M 4 HOH 136 562 112 HOH HOH A . M 4 HOH 137 563 113 HOH HOH A . M 4 HOH 138 564 114 HOH HOH A . M 4 HOH 139 565 115 HOH HOH A . M 4 HOH 140 566 116 HOH HOH A . M 4 HOH 141 567 117 HOH HOH A . M 4 HOH 142 568 118 HOH HOH A . M 4 HOH 143 569 119 HOH HOH A . M 4 HOH 144 570 120 HOH HOH A . M 4 HOH 145 571 121 HOH HOH A . M 4 HOH 146 572 122 HOH HOH A . M 4 HOH 147 573 123 HOH HOH A . M 4 HOH 148 574 124 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 118 A ASN 234 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 202 A ASN 334 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 253 A ASN 386 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 309 A ASN 448 ? ASN 'GLYCOSYLATION SITE' 5 A ASN 173 A ASN 289 ? ASN 'GLYCOSYLATION SITE' 6 A ASN 125 A ASN 241 ? ASN 'GLYCOSYLATION SITE' 7 A ASN 146 A ASN 262 ? ASN 'GLYCOSYLATION SITE' 8 A ASN 179 A ASN 295 ? ASN 'GLYCOSYLATION SITE' 9 A ASN 259 A ASN 392 ? ASN 'GLYCOSYLATION SITE' 10 A ASN 160 A ASN 276 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2012-05-23 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.pdbx_role' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.7912 7.5291 -18.3549 0.4241 0.3251 0.2948 -0.0748 -0.0077 0.0066 1.3719 0.8971 0.8850 0.0160 -0.9221 -0.5505 -0.0685 -0.1073 0.3159 -0.1386 0.0355 -0.0473 -0.4479 0.3098 0.0401 'X-RAY DIFFRACTION' 2 ? refined 11.6296 -1.6387 -13.8940 0.2575 0.2436 0.2280 -0.0231 0.0274 0.0108 1.3780 2.4082 2.4516 0.6429 0.7281 0.9575 -0.1086 -0.1682 0.1367 0.0236 -0.0019 0.1441 -0.1841 0.0563 0.0820 'X-RAY DIFFRACTION' 3 ? refined 15.9172 -21.2629 -15.1480 0.2850 0.2674 0.3199 0.0524 0.0071 -0.0256 1.8624 2.1698 2.9239 0.3582 1.2056 0.5581 0.0584 0.1011 -0.2977 0.1776 0.1187 -0.2488 0.3329 0.2811 -0.1788 'X-RAY DIFFRACTION' 4 ? refined 16.6589 0.2471 -7.9503 0.2943 0.3541 0.2599 -0.0358 -0.0195 -0.0152 0.5689 1.4921 0.2340 -0.4296 0.0995 -0.4937 -0.1333 -0.3578 0.0285 0.2787 0.1294 -0.0060 -0.0038 0.1200 -0.0069 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A and resi 44:89' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain A and resi 90:254' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'chain A and resi 255:474' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'chain A and resi 475:492' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.6.1_357 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 565 ? ? O A HOH 566 ? ? 1.92 2 1 O A HOH 135 ? ? O A HOH 567 ? ? 2.00 3 1 ND2 A ASN 234 ? ? O5 A NAG 734 ? ? 2.02 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 88 ? ? 35.01 39.43 2 1 LEU A 116 ? ? -112.54 66.07 3 1 ASP A 211 ? ? -168.87 107.73 4 1 GLN A 258 ? ? 69.17 -59.25 5 1 GLU A 268 ? ? -131.94 -99.50 6 1 ASN A 276 ? ? -173.00 94.68 7 1 PHE A 391 ? ? -108.48 61.19 8 1 ASN A 474 ? ? -178.92 112.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 318 ? A GLY 186 2 1 Y 1 A GLY 319 ? A GLY 187 3 1 Y 1 A SER 320 ? A SER 188 4 1 Y 1 A GLY 321 ? A GLY 189 5 1 Y 1 A SER 322 ? A SER 190 6 1 Y 1 A GLY 323 ? A GLY 191 7 1 Y 1 A GLY 403 ? A GLY 264 8 1 Y 1 A ASN 404 ? A ASN 265 9 1 Y 1 A GLU 405 ? A GLU 266 10 1 Y 1 A THR 406 ? A THR 267 11 1 Y 1 A MET 407 ? A MET 268 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 4 water HOH #