data_3UQ2 # _entry.id 3UQ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UQ2 pdb_00003uq2 10.2210/pdb3uq2/pdb NDB NA1408 ? ? RCSB RCSB069066 ? ? WWPDB D_1000069066 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MGH . unspecified PDB 3MGI . unspecified PDB 3UPQ . unspecified PDB 3UQ0 . unspecified PDB 3UQ1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UQ2 _pdbx_database_status.recvd_initial_deposition_date 2011-11-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gosavi, R.A.' 1 'Moon, A.F.' 2 'Kunkel, T.A.' 3 'Pedersen, L.C.' 4 'Bebenek, K.' 5 # _citation.id primary _citation.title 'The catalytic cycle for ribonucleotide incorporation by human DNA Pol lambda' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 7518 _citation.page_last 7527 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22584622 _citation.pdbx_database_id_DOI 10.1093/nar/gks413 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gosavi, R.A.' 1 ? primary 'Moon, A.F.' 2 ? primary 'Kunkel, T.A.' 3 ? primary 'Pedersen, L.C.' 4 ? primary 'Bebenek, K.' 5 ? # _cell.entry_id 3UQ2 _cell.length_a 55.286 _cell.length_b 62.002 _cell.length_c 141.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UQ2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase lambda' 36703.977 1 '2.7.7.7, 4.2.99.-' 'SQEENGQQQ to KGET' 'Loop mutant of DNA polymerase lambda' ? 2 polymer syn "5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3'" 3365.196 1 ? ? ? ? 3 polymer syn "5'-D(*CP*AP*GP*TP*AP)-R(P*CP*A)-3'" 2122.425 1 ? ? ? ? 4 polymer syn "5'-D(P*GP*CP*CP*G)-3'" 1191.818 1 ? ? ? ? 5 non-polymer syn PYROPHOSPHATE 177.975 1 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 7 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 8 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol Lambda, DNA polymerase beta-2, Pol beta2, DNA polymerase kappa' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRH RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRVLPTPTEKDVFRLLGLP YREPAERDW ; ;AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRH RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRVLPTPTEKDVFRLLGLP YREPAERDW ; A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DC)(DT)(DG)(DT)(DA)(DC)(DT)(DG)' CGGCTGTACTG T ? 3 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no '(DC)(DA)(DG)(DT)(DA)C(DA)' CAGTACA P ? 4 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DG)' GCCG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLN n 1 3 PRO n 1 4 SER n 1 5 SER n 1 6 GLN n 1 7 LYS n 1 8 ALA n 1 9 THR n 1 10 ASN n 1 11 HIS n 1 12 ASN n 1 13 LEU n 1 14 HIS n 1 15 ILE n 1 16 THR n 1 17 GLU n 1 18 LYS n 1 19 LEU n 1 20 GLU n 1 21 VAL n 1 22 LEU n 1 23 ALA n 1 24 LYS n 1 25 ALA n 1 26 TYR n 1 27 SER n 1 28 VAL n 1 29 GLN n 1 30 GLY n 1 31 ASP n 1 32 LYS n 1 33 TRP n 1 34 ARG n 1 35 ALA n 1 36 LEU n 1 37 GLY n 1 38 TYR n 1 39 ALA n 1 40 LYS n 1 41 ALA n 1 42 ILE n 1 43 ASN n 1 44 ALA n 1 45 LEU n 1 46 LYS n 1 47 SER n 1 48 PHE n 1 49 HIS n 1 50 LYS n 1 51 PRO n 1 52 VAL n 1 53 THR n 1 54 SER n 1 55 TYR n 1 56 GLN n 1 57 GLU n 1 58 ALA n 1 59 CYS n 1 60 SER n 1 61 ILE n 1 62 PRO n 1 63 GLY n 1 64 ILE n 1 65 GLY n 1 66 LYS n 1 67 ARG n 1 68 MET n 1 69 ALA n 1 70 GLU n 1 71 LYS n 1 72 ILE n 1 73 ILE n 1 74 GLU n 1 75 ILE n 1 76 LEU n 1 77 GLU n 1 78 SER n 1 79 GLY n 1 80 HIS n 1 81 LEU n 1 82 ARG n 1 83 LYS n 1 84 LEU n 1 85 ASP n 1 86 HIS n 1 87 ILE n 1 88 SER n 1 89 GLU n 1 90 SER n 1 91 VAL n 1 92 PRO n 1 93 VAL n 1 94 LEU n 1 95 GLU n 1 96 LEU n 1 97 PHE n 1 98 SER n 1 99 ASN n 1 100 ILE n 1 101 TRP n 1 102 GLY n 1 103 ALA n 1 104 GLY n 1 105 THR n 1 106 LYS n 1 107 THR n 1 108 ALA n 1 109 GLN n 1 110 MET n 1 111 TRP n 1 112 TYR n 1 113 GLN n 1 114 GLN n 1 115 GLY n 1 116 PHE n 1 117 ARG n 1 118 SER n 1 119 LEU n 1 120 GLU n 1 121 ASP n 1 122 ILE n 1 123 ARG n 1 124 SER n 1 125 GLN n 1 126 ALA n 1 127 SER n 1 128 LEU n 1 129 THR n 1 130 THR n 1 131 GLN n 1 132 GLN n 1 133 ALA n 1 134 ILE n 1 135 GLY n 1 136 LEU n 1 137 LYS n 1 138 HIS n 1 139 TYR n 1 140 SER n 1 141 ASP n 1 142 PHE n 1 143 LEU n 1 144 GLU n 1 145 ARG n 1 146 MET n 1 147 PRO n 1 148 ARG n 1 149 GLU n 1 150 GLU n 1 151 ALA n 1 152 THR n 1 153 GLU n 1 154 ILE n 1 155 GLU n 1 156 GLN n 1 157 THR n 1 158 VAL n 1 159 GLN n 1 160 LYS n 1 161 ALA n 1 162 ALA n 1 163 GLN n 1 164 ALA n 1 165 PHE n 1 166 ASN n 1 167 SER n 1 168 GLY n 1 169 LEU n 1 170 LEU n 1 171 CYS n 1 172 VAL n 1 173 ALA n 1 174 CYS n 1 175 GLY n 1 176 SER n 1 177 TYR n 1 178 ARG n 1 179 ARG n 1 180 GLY n 1 181 LYS n 1 182 ALA n 1 183 THR n 1 184 CYS n 1 185 GLY n 1 186 ASP n 1 187 VAL n 1 188 ASP n 1 189 VAL n 1 190 LEU n 1 191 ILE n 1 192 THR n 1 193 HIS n 1 194 PRO n 1 195 ASP n 1 196 GLY n 1 197 ARG n 1 198 SER n 1 199 HIS n 1 200 ARG n 1 201 GLY n 1 202 ILE n 1 203 PHE n 1 204 SER n 1 205 ARG n 1 206 LEU n 1 207 LEU n 1 208 ASP n 1 209 SER n 1 210 LEU n 1 211 ARG n 1 212 GLN n 1 213 GLU n 1 214 GLY n 1 215 PHE n 1 216 LEU n 1 217 THR n 1 218 ASP n 1 219 ASP n 1 220 LEU n 1 221 VAL n 1 222 LYS n 1 223 GLY n 1 224 GLU n 1 225 THR n 1 226 LYS n 1 227 TYR n 1 228 LEU n 1 229 GLY n 1 230 VAL n 1 231 CYS n 1 232 ARG n 1 233 LEU n 1 234 PRO n 1 235 GLY n 1 236 PRO n 1 237 GLY n 1 238 ARG n 1 239 ARG n 1 240 HIS n 1 241 ARG n 1 242 ARG n 1 243 LEU n 1 244 ASP n 1 245 ILE n 1 246 ILE n 1 247 VAL n 1 248 VAL n 1 249 PRO n 1 250 TYR n 1 251 SER n 1 252 GLU n 1 253 PHE n 1 254 ALA n 1 255 CYS n 1 256 ALA n 1 257 LEU n 1 258 LEU n 1 259 TYR n 1 260 PHE n 1 261 THR n 1 262 GLY n 1 263 SER n 1 264 ALA n 1 265 HIS n 1 266 PHE n 1 267 ASN n 1 268 ARG n 1 269 SER n 1 270 MET n 1 271 ARG n 1 272 ALA n 1 273 LEU n 1 274 ALA n 1 275 LYS n 1 276 THR n 1 277 LYS n 1 278 GLY n 1 279 MET n 1 280 SER n 1 281 LEU n 1 282 SER n 1 283 GLU n 1 284 HIS n 1 285 ALA n 1 286 LEU n 1 287 SER n 1 288 THR n 1 289 ALA n 1 290 VAL n 1 291 VAL n 1 292 ARG n 1 293 ASN n 1 294 THR n 1 295 HIS n 1 296 GLY n 1 297 ALA n 1 298 LYS n 1 299 VAL n 1 300 GLY n 1 301 PRO n 1 302 GLY n 1 303 ARG n 1 304 VAL n 1 305 LEU n 1 306 PRO n 1 307 THR n 1 308 PRO n 1 309 THR n 1 310 GLU n 1 311 LYS n 1 312 ASP n 1 313 VAL n 1 314 PHE n 1 315 ARG n 1 316 LEU n 1 317 LEU n 1 318 GLY n 1 319 LEU n 1 320 PRO n 1 321 TYR n 1 322 ARG n 1 323 GLU n 1 324 PRO n 1 325 ALA n 1 326 GLU n 1 327 ARG n 1 328 ASP n 1 329 TRP n 2 1 DC n 2 2 DG n 2 3 DG n 2 4 DC n 2 5 DT n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DC n 2 10 DT n 2 11 DG n 3 1 DC n 3 2 DA n 3 3 DG n 3 4 DT n 3 5 DA n 3 6 C n 3 7 DA n 4 1 DG n 4 2 DC n 4 3 DC n 4 4 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POLL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPOLL_HUMAN Q9UGP5 1 ;AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPG PGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFR LLGLPYREPAERDW ; 242 ? 2 PDB 3UQ2 3UQ2 2 CGGCTGTACTG ? ? 3 PDB 3UQ2 3UQ2 3 CAGTACA ? ? 4 PDB 3UQ2 3UQ2 4 GCCG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UQ2 A 1 ? 329 ? Q9UGP5 242 ? 575 ? 242 575 2 2 3UQ2 T 1 ? 11 ? 3UQ2 1 ? 11 ? 1 11 3 3 3UQ2 P 1 ? 7 ? 3UQ2 1 ? 7 ? 1 7 4 4 3UQ2 D 1 ? 4 ? 3UQ2 1 ? 4 ? 1 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UQ2 LYS A 222 ? UNP Q9UGP5 SER 463 'SEE REMARK 999' 463 1 1 3UQ2 GLY A 223 ? UNP Q9UGP5 GLN 464 'SEE REMARK 999' 464 2 1 3UQ2 GLU A 224 ? UNP Q9UGP5 GLN 470 'SEE REMARK 999' 470 3 1 3UQ2 THR A 225 ? UNP Q9UGP5 GLN 471 'SEE REMARK 999' 471 4 1 3UQ2 ALA A 297 ? UNP Q9UGP5 CYS 543 'engineered mutation' 543 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PPV non-polymer . PYROPHOSPHATE ? 'H4 O7 P2' 177.975 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UQ2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;170mM ammonium acetate, 85mM sodium citrate tribasic dihydrate pH 5.6, 25.5% (w/v) PEG4000, 15% (v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-04-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3UQ2 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.25 _reflns.number_obs 23003 _reflns.number_all ? _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.B_iso_Wilson_estimate 41.68 _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 69.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.288 _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UQ2 _refine.ls_number_reflns_obs 22395 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.130 _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs 94.10 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_all 0.2132 _refine.ls_R_factor_R_work 0.2111 _refine.ls_R_factor_R_free 0.2537 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.86 _refine.ls_number_reflns_R_free 1089 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -19.1779 _refine.aniso_B[2][2] 30.1198 _refine.aniso_B[3][3] -10.9420 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.356 _refine.solvent_model_param_bsol 59.528 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3MGI _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'R free flags used from 3MGI' _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.56 _refine.pdbx_overall_phase_error 30.64 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2395 _refine_hist.pdbx_number_atoms_nucleic_acid 447 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 2966 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 27.130 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 2961 ? 'X-RAY DIFFRACTION' f_angle_d 1.199 ? ? 4108 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.448 ? ? 876 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.073 ? ? 459 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 451 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.2500 2.3524 2108 0.2585 76.00 0.3557 . . 99 . . . . 'X-RAY DIFFRACTION' . 2.3524 2.4763 2362 0.2491 85.00 0.3289 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.4763 2.6313 2630 0.2479 94.00 0.3547 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.6313 2.8343 2774 0.2436 99.00 0.2739 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.8343 3.1192 2797 0.2439 100.00 0.2994 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.1192 3.5697 2801 0.2116 99.00 0.2642 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.5697 4.4941 2843 0.1816 100.00 0.2243 . . 150 . . . . 'X-RAY DIFFRACTION' . 4.4941 27.1319 2991 0.2010 99.00 0.2177 . . 153 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3UQ2 _struct.title ;Crystal structure of the post-catalytic product complex of polymerase lambda with an rCMP inserted opposite a templating G and dAMP inserted opposite a templating T at the primer terminus. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UQ2 _struct_keywords.pdbx_keywords 'TRANSFERASE, LYASE/DNA' _struct_keywords.text 'DNA polymerase lambda, ribonucleotide incorporation, Protein Conformation, TRANSFERASE, LYASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? K N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 15 ? GLN A 29 ? ILE A 256 GLN A 270 1 ? 15 HELX_P HELX_P2 2 ASP A 31 ? PHE A 48 ? ASP A 272 PHE A 289 1 ? 18 HELX_P HELX_P3 3 SER A 54 ? ILE A 61 ? SER A 295 ILE A 302 1 ? 8 HELX_P HELX_P4 4 GLY A 65 ? SER A 78 ? GLY A 306 SER A 319 1 ? 14 HELX_P HELX_P5 5 LEU A 81 ? HIS A 86 ? LEU A 322 HIS A 327 5 ? 6 HELX_P HELX_P6 6 SER A 90 ? ASN A 99 ? SER A 331 ASN A 340 1 ? 10 HELX_P HELX_P7 7 GLY A 104 ? GLN A 114 ? GLY A 345 GLN A 355 1 ? 11 HELX_P HELX_P8 8 SER A 118 ? ALA A 126 ? SER A 359 ALA A 367 1 ? 9 HELX_P HELX_P9 9 THR A 129 ? HIS A 138 ? THR A 370 HIS A 379 1 ? 10 HELX_P HELX_P10 10 HIS A 138 ? LEU A 143 ? HIS A 379 LEU A 384 1 ? 6 HELX_P HELX_P11 11 ARG A 148 ? GLN A 163 ? ARG A 389 GLN A 404 1 ? 16 HELX_P HELX_P12 12 CYS A 174 ? ARG A 179 ? CYS A 415 ARG A 420 1 ? 6 HELX_P HELX_P13 13 ARG A 200 ? GLU A 213 ? ARG A 441 GLU A 454 1 ? 14 HELX_P HELX_P14 14 GLU A 252 ? GLY A 262 ? GLU A 498 GLY A 508 1 ? 11 HELX_P HELX_P15 15 SER A 263 ? LYS A 277 ? SER A 509 LYS A 523 1 ? 15 HELX_P HELX_P16 16 THR A 309 ? LEU A 317 ? THR A 555 LEU A 563 1 ? 9 HELX_P HELX_P17 17 GLU A 323 ? ASP A 328 ? GLU A 569 ASP A 574 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1 A HOH 44 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc2 metalc ? ? F MG . MG ? ? ? 1_555 A ASP 186 OD1 ? ? A MG 1 A ASP 427 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc3 metalc ? ? F MG . MG ? ? ? 1_555 A ASP 188 OD1 ? ? A MG 1 A ASP 429 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 E PPV . O21 A ? A MG 1 A PPV 576 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 E PPV . O32 A ? A MG 1 A PPV 576 1_555 ? ? ? ? ? ? ? 2.441 ? ? metalc6 metalc ? ? F MG . MG ? ? ? 1_555 E PPV . O32 B ? A MG 1 A PPV 576 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 C DA 7 OP1 ? ? A MG 1 P DA 7 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc8 metalc ? ? G NA . NA ? ? ? 1_555 A SER 98 O ? ? A NA 3 A SER 339 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc9 metalc ? ? G NA . NA ? ? ? 1_555 A ILE 100 O ? ? A NA 3 A ILE 341 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc10 metalc ? ? G NA . NA ? ? ? 1_555 A ALA 103 O ? ? A NA 3 A ALA 344 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc11 metalc ? ? G NA . NA ? ? ? 1_555 C DA 5 OP1 ? ? A NA 3 P DA 5 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc12 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 3 P HOH 50 1_555 ? ? ? ? ? ? ? 2.724 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 D DG 4 N1 ? ? T DC 1 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DG 4 O6 ? ? T DC 1 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 D DG 4 N2 ? ? T DC 1 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 D DC 3 N3 ? ? T DG 2 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 D DC 3 O2 ? ? T DG 2 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 D DC 3 N4 ? ? T DG 2 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DC 2 N3 ? ? T DG 3 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 2 O2 ? ? T DG 3 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DC 2 N4 ? ? T DG 3 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 4 N3 ? ? ? 1_555 D DG 1 N1 ? ? T DC 4 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 4 N4 ? ? ? 1_555 D DG 1 O6 ? ? T DC 4 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 4 O2 ? ? ? 1_555 D DG 1 N2 ? ? T DC 4 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 7 N1 ? ? T DT 5 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 7 N6 ? ? T DT 5 P DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C C 6 N3 ? ? T DG 6 P C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C C 6 O2 ? ? T DG 6 P C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C C 6 N4 ? ? T DG 6 P C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 5 N1 ? ? T DT 7 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 5 N6 ? ? T DT 7 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 4 N3 ? ? T DA 8 P DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 4 O4 ? ? T DA 8 P DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 3 N1 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 3 O6 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 3 N2 ? ? T DC 9 P DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 2 N1 ? ? T DT 10 P DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 2 N6 ? ? T DT 10 P DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 1 N3 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 1 O2 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 1 N4 ? ? T DG 11 P DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 262 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 508 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 263 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 509 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 146 ? PRO A 147 ? MET A 387 PRO A 388 A 2 THR A 183 ? CYS A 184 ? THR A 424 CYS A 425 B 1 LEU A 170 ? ALA A 173 ? LEU A 411 ALA A 414 B 2 ASP A 186 ? HIS A 193 ? ASP A 427 HIS A 434 B 3 ARG A 241 ? PRO A 249 ? ARG A 487 PRO A 495 B 4 LYS A 226 ? CYS A 231 ? LYS A 472 CYS A 477 B 5 LEU A 216 ? LYS A 222 ? LEU A 457 LYS A 463 C 1 SER A 280 ? LEU A 281 ? SER A 526 LEU A 527 C 2 LEU A 286 ? THR A 288 ? LEU A 532 THR A 534 C 3 ARG A 303 ? VAL A 304 ? ARG A 549 VAL A 550 D 1 VAL A 291 ? ARG A 292 ? VAL A 537 ARG A 538 D 2 LYS A 298 ? GLY A 300 ? LYS A 544 GLY A 546 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 146 ? N MET A 387 O CYS A 184 ? O CYS A 425 B 1 2 N VAL A 172 ? N VAL A 413 O LEU A 190 ? O LEU A 431 B 2 3 N VAL A 189 ? N VAL A 430 O ASP A 244 ? O ASP A 490 B 3 4 O ARG A 241 ? O ARG A 487 N CYS A 231 ? N CYS A 477 B 4 5 O LEU A 228 ? O LEU A 474 N VAL A 221 ? N VAL A 462 C 1 2 N SER A 280 ? N SER A 526 O SER A 287 ? O SER A 533 C 2 3 N THR A 288 ? N THR A 534 O ARG A 303 ? O ARG A 549 D 1 2 N VAL A 291 ? N VAL A 537 O VAL A 299 ? O VAL A 545 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PPV 576 ? 14 'BINDING SITE FOR RESIDUE PPV A 576' AC2 Software A MG 1 ? 5 'BINDING SITE FOR RESIDUE MG A 1' AC3 Software A NA 3 ? 5 'BINDING SITE FOR RESIDUE NA A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 MG F . ? MG A 1 . ? 1_555 ? 2 AC1 14 HOH H . ? HOH A 6 . ? 1_555 ? 3 AC1 14 HOH H . ? HOH A 44 . ? 1_555 ? 4 AC1 14 HOH H . ? HOH A 119 . ? 1_555 ? 5 AC1 14 ARG A 145 ? ARG A 386 . ? 1_555 ? 6 AC1 14 GLY A 175 ? GLY A 416 . ? 1_555 ? 7 AC1 14 SER A 176 ? SER A 417 . ? 1_555 ? 8 AC1 14 ARG A 179 ? ARG A 420 . ? 1_555 ? 9 AC1 14 LYS A 181 ? LYS A 422 . ? 1_555 ? 10 AC1 14 CYS A 184 ? CYS A 425 . ? 1_555 ? 11 AC1 14 GLY A 185 ? GLY A 426 . ? 1_555 ? 12 AC1 14 ASP A 186 ? ASP A 427 . ? 1_555 ? 13 AC1 14 ASP A 188 ? ASP A 429 . ? 1_555 ? 14 AC1 14 DA C 7 ? DA P 7 . ? 1_555 ? 15 AC2 5 HOH H . ? HOH A 44 . ? 1_555 ? 16 AC2 5 ASP A 186 ? ASP A 427 . ? 1_555 ? 17 AC2 5 ASP A 188 ? ASP A 429 . ? 1_555 ? 18 AC2 5 PPV E . ? PPV A 576 . ? 1_555 ? 19 AC2 5 DA C 7 ? DA P 7 . ? 1_555 ? 20 AC3 5 SER A 98 ? SER A 339 . ? 1_555 ? 21 AC3 5 ILE A 100 ? ILE A 341 . ? 1_555 ? 22 AC3 5 ALA A 103 ? ALA A 344 . ? 1_555 ? 23 AC3 5 DA C 5 ? DA P 5 . ? 1_555 ? 24 AC3 5 HOH J . ? HOH P 50 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UQ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UQ2 _atom_sites.fract_transf_matrix[1][1] 0.018088 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016129 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007069 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 242 ? ? ? A . n A 1 2 GLN 2 243 ? ? ? A . n A 1 3 PRO 3 244 ? ? ? A . n A 1 4 SER 4 245 ? ? ? A . n A 1 5 SER 5 246 ? ? ? A . n A 1 6 GLN 6 247 ? ? ? A . n A 1 7 LYS 7 248 ? ? ? A . n A 1 8 ALA 8 249 ? ? ? A . n A 1 9 THR 9 250 ? ? ? A . n A 1 10 ASN 10 251 ? ? ? A . n A 1 11 HIS 11 252 ? ? ? A . n A 1 12 ASN 12 253 253 ASN ASN A . n A 1 13 LEU 13 254 254 LEU LEU A . n A 1 14 HIS 14 255 255 HIS HIS A . n A 1 15 ILE 15 256 256 ILE ILE A . n A 1 16 THR 16 257 257 THR THR A . n A 1 17 GLU 17 258 258 GLU GLU A . n A 1 18 LYS 18 259 259 LYS LYS A . n A 1 19 LEU 19 260 260 LEU LEU A . n A 1 20 GLU 20 261 261 GLU GLU A . n A 1 21 VAL 21 262 262 VAL VAL A . n A 1 22 LEU 22 263 263 LEU LEU A . n A 1 23 ALA 23 264 264 ALA ALA A . n A 1 24 LYS 24 265 265 LYS LYS A . n A 1 25 ALA 25 266 266 ALA ALA A . n A 1 26 TYR 26 267 267 TYR TYR A . n A 1 27 SER 27 268 268 SER SER A . n A 1 28 VAL 28 269 269 VAL VAL A . n A 1 29 GLN 29 270 270 GLN GLN A . n A 1 30 GLY 30 271 271 GLY GLY A . n A 1 31 ASP 31 272 272 ASP ASP A . n A 1 32 LYS 32 273 273 LYS LYS A . n A 1 33 TRP 33 274 274 TRP TRP A . n A 1 34 ARG 34 275 275 ARG ARG A . n A 1 35 ALA 35 276 276 ALA ALA A . n A 1 36 LEU 36 277 277 LEU LEU A . n A 1 37 GLY 37 278 278 GLY GLY A . n A 1 38 TYR 38 279 279 TYR TYR A . n A 1 39 ALA 39 280 280 ALA ALA A . n A 1 40 LYS 40 281 281 LYS LYS A . n A 1 41 ALA 41 282 282 ALA ALA A . n A 1 42 ILE 42 283 283 ILE ILE A . n A 1 43 ASN 43 284 284 ASN ASN A . n A 1 44 ALA 44 285 285 ALA ALA A . n A 1 45 LEU 45 286 286 LEU LEU A . n A 1 46 LYS 46 287 287 LYS LYS A . n A 1 47 SER 47 288 288 SER SER A . n A 1 48 PHE 48 289 289 PHE PHE A . n A 1 49 HIS 49 290 290 HIS HIS A . n A 1 50 LYS 50 291 291 LYS LYS A . n A 1 51 PRO 51 292 292 PRO PRO A . n A 1 52 VAL 52 293 293 VAL VAL A . n A 1 53 THR 53 294 294 THR THR A . n A 1 54 SER 54 295 295 SER SER A . n A 1 55 TYR 55 296 296 TYR TYR A . n A 1 56 GLN 56 297 297 GLN GLN A . n A 1 57 GLU 57 298 298 GLU GLU A . n A 1 58 ALA 58 299 299 ALA ALA A . n A 1 59 CYS 59 300 300 CYS CYS A . n A 1 60 SER 60 301 301 SER SER A . n A 1 61 ILE 61 302 302 ILE ILE A . n A 1 62 PRO 62 303 303 PRO PRO A . n A 1 63 GLY 63 304 304 GLY GLY A . n A 1 64 ILE 64 305 305 ILE ILE A . n A 1 65 GLY 65 306 306 GLY GLY A . n A 1 66 LYS 66 307 307 LYS LYS A . n A 1 67 ARG 67 308 308 ARG ARG A . n A 1 68 MET 68 309 309 MET MET A . n A 1 69 ALA 69 310 310 ALA ALA A . n A 1 70 GLU 70 311 311 GLU GLU A . n A 1 71 LYS 71 312 312 LYS LYS A . n A 1 72 ILE 72 313 313 ILE ILE A . n A 1 73 ILE 73 314 314 ILE ILE A . n A 1 74 GLU 74 315 315 GLU GLU A . n A 1 75 ILE 75 316 316 ILE ILE A . n A 1 76 LEU 76 317 317 LEU LEU A . n A 1 77 GLU 77 318 318 GLU GLU A . n A 1 78 SER 78 319 319 SER SER A . n A 1 79 GLY 79 320 320 GLY GLY A . n A 1 80 HIS 80 321 321 HIS HIS A . n A 1 81 LEU 81 322 322 LEU LEU A . n A 1 82 ARG 82 323 323 ARG ARG A . n A 1 83 LYS 83 324 324 LYS LYS A . n A 1 84 LEU 84 325 325 LEU LEU A . n A 1 85 ASP 85 326 326 ASP ASP A . n A 1 86 HIS 86 327 327 HIS HIS A . n A 1 87 ILE 87 328 328 ILE ILE A . n A 1 88 SER 88 329 329 SER SER A . n A 1 89 GLU 89 330 330 GLU GLU A . n A 1 90 SER 90 331 331 SER SER A . n A 1 91 VAL 91 332 332 VAL VAL A . n A 1 92 PRO 92 333 333 PRO PRO A . n A 1 93 VAL 93 334 334 VAL VAL A . n A 1 94 LEU 94 335 335 LEU LEU A . n A 1 95 GLU 95 336 336 GLU GLU A . n A 1 96 LEU 96 337 337 LEU LEU A . n A 1 97 PHE 97 338 338 PHE PHE A . n A 1 98 SER 98 339 339 SER SER A . n A 1 99 ASN 99 340 340 ASN ASN A . n A 1 100 ILE 100 341 341 ILE ILE A . n A 1 101 TRP 101 342 342 TRP TRP A . n A 1 102 GLY 102 343 343 GLY GLY A . n A 1 103 ALA 103 344 344 ALA ALA A . n A 1 104 GLY 104 345 345 GLY GLY A . n A 1 105 THR 105 346 346 THR THR A . n A 1 106 LYS 106 347 347 LYS LYS A . n A 1 107 THR 107 348 348 THR THR A . n A 1 108 ALA 108 349 349 ALA ALA A . n A 1 109 GLN 109 350 350 GLN GLN A . n A 1 110 MET 110 351 351 MET MET A . n A 1 111 TRP 111 352 352 TRP TRP A . n A 1 112 TYR 112 353 353 TYR TYR A . n A 1 113 GLN 113 354 354 GLN GLN A . n A 1 114 GLN 114 355 355 GLN GLN A . n A 1 115 GLY 115 356 356 GLY GLY A . n A 1 116 PHE 116 357 357 PHE PHE A . n A 1 117 ARG 117 358 358 ARG ARG A . n A 1 118 SER 118 359 359 SER SER A . n A 1 119 LEU 119 360 360 LEU LEU A . n A 1 120 GLU 120 361 361 GLU GLU A . n A 1 121 ASP 121 362 362 ASP ASP A . n A 1 122 ILE 122 363 363 ILE ILE A . n A 1 123 ARG 123 364 364 ARG ARG A . n A 1 124 SER 124 365 365 SER SER A . n A 1 125 GLN 125 366 366 GLN GLN A . n A 1 126 ALA 126 367 367 ALA ALA A . n A 1 127 SER 127 368 368 SER SER A . n A 1 128 LEU 128 369 369 LEU LEU A . n A 1 129 THR 129 370 370 THR THR A . n A 1 130 THR 130 371 371 THR THR A . n A 1 131 GLN 131 372 372 GLN GLN A . n A 1 132 GLN 132 373 373 GLN GLN A . n A 1 133 ALA 133 374 374 ALA ALA A . n A 1 134 ILE 134 375 375 ILE ILE A . n A 1 135 GLY 135 376 376 GLY GLY A . n A 1 136 LEU 136 377 377 LEU LEU A . n A 1 137 LYS 137 378 378 LYS LYS A . n A 1 138 HIS 138 379 379 HIS HIS A . n A 1 139 TYR 139 380 380 TYR TYR A . n A 1 140 SER 140 381 381 SER SER A . n A 1 141 ASP 141 382 382 ASP ASP A . n A 1 142 PHE 142 383 383 PHE PHE A . n A 1 143 LEU 143 384 384 LEU LEU A . n A 1 144 GLU 144 385 385 GLU GLU A . n A 1 145 ARG 145 386 386 ARG ARG A . n A 1 146 MET 146 387 387 MET MET A . n A 1 147 PRO 147 388 388 PRO PRO A . n A 1 148 ARG 148 389 389 ARG ARG A . n A 1 149 GLU 149 390 390 GLU GLU A . n A 1 150 GLU 150 391 391 GLU GLU A . n A 1 151 ALA 151 392 392 ALA ALA A . n A 1 152 THR 152 393 393 THR THR A . n A 1 153 GLU 153 394 394 GLU GLU A . n A 1 154 ILE 154 395 395 ILE ILE A . n A 1 155 GLU 155 396 396 GLU GLU A . n A 1 156 GLN 156 397 397 GLN GLN A . n A 1 157 THR 157 398 398 THR THR A . n A 1 158 VAL 158 399 399 VAL VAL A . n A 1 159 GLN 159 400 400 GLN GLN A . n A 1 160 LYS 160 401 401 LYS LYS A . n A 1 161 ALA 161 402 402 ALA ALA A . n A 1 162 ALA 162 403 403 ALA ALA A . n A 1 163 GLN 163 404 404 GLN GLN A . n A 1 164 ALA 164 405 405 ALA ALA A . n A 1 165 PHE 165 406 406 PHE PHE A . n A 1 166 ASN 166 407 407 ASN ASN A . n A 1 167 SER 167 408 408 SER SER A . n A 1 168 GLY 168 409 409 GLY GLY A . n A 1 169 LEU 169 410 410 LEU LEU A . n A 1 170 LEU 170 411 411 LEU LEU A . n A 1 171 CYS 171 412 412 CYS CYS A . n A 1 172 VAL 172 413 413 VAL VAL A . n A 1 173 ALA 173 414 414 ALA ALA A . n A 1 174 CYS 174 415 415 CYS CYS A . n A 1 175 GLY 175 416 416 GLY GLY A . n A 1 176 SER 176 417 417 SER SER A . n A 1 177 TYR 177 418 418 TYR TYR A . n A 1 178 ARG 178 419 419 ARG ARG A . n A 1 179 ARG 179 420 420 ARG ARG A . n A 1 180 GLY 180 421 421 GLY GLY A . n A 1 181 LYS 181 422 422 LYS LYS A . n A 1 182 ALA 182 423 423 ALA ALA A . n A 1 183 THR 183 424 424 THR THR A . n A 1 184 CYS 184 425 425 CYS CYS A . n A 1 185 GLY 185 426 426 GLY GLY A . n A 1 186 ASP 186 427 427 ASP ASP A . n A 1 187 VAL 187 428 428 VAL VAL A . n A 1 188 ASP 188 429 429 ASP ASP A . n A 1 189 VAL 189 430 430 VAL VAL A . n A 1 190 LEU 190 431 431 LEU LEU A . n A 1 191 ILE 191 432 432 ILE ILE A . n A 1 192 THR 192 433 433 THR THR A . n A 1 193 HIS 193 434 434 HIS HIS A . n A 1 194 PRO 194 435 435 PRO PRO A . n A 1 195 ASP 195 436 436 ASP ASP A . n A 1 196 GLY 196 437 437 GLY GLY A . n A 1 197 ARG 197 438 438 ARG ARG A . n A 1 198 SER 198 439 439 SER SER A . n A 1 199 HIS 199 440 440 HIS HIS A . n A 1 200 ARG 200 441 441 ARG ARG A . n A 1 201 GLY 201 442 442 GLY GLY A . n A 1 202 ILE 202 443 443 ILE ILE A . n A 1 203 PHE 203 444 444 PHE PHE A . n A 1 204 SER 204 445 445 SER SER A . n A 1 205 ARG 205 446 446 ARG ARG A . n A 1 206 LEU 206 447 447 LEU LEU A . n A 1 207 LEU 207 448 448 LEU LEU A . n A 1 208 ASP 208 449 449 ASP ASP A . n A 1 209 SER 209 450 450 SER SER A . n A 1 210 LEU 210 451 451 LEU LEU A . n A 1 211 ARG 211 452 452 ARG ARG A . n A 1 212 GLN 212 453 453 GLN GLN A . n A 1 213 GLU 213 454 454 GLU GLU A . n A 1 214 GLY 214 455 455 GLY GLY A . n A 1 215 PHE 215 456 456 PHE PHE A . n A 1 216 LEU 216 457 457 LEU LEU A . n A 1 217 THR 217 458 458 THR THR A . n A 1 218 ASP 218 459 459 ASP ASP A . n A 1 219 ASP 219 460 460 ASP ASP A . n A 1 220 LEU 220 461 461 LEU LEU A . n A 1 221 VAL 221 462 462 VAL VAL A . n A 1 222 LYS 222 463 463 LYS LYS A . n A 1 223 GLY 223 464 464 GLY GLY A . n A 1 224 GLU 224 470 470 GLU GLU A . n A 1 225 THR 225 471 471 THR THR A . n A 1 226 LYS 226 472 472 LYS LYS A . n A 1 227 TYR 227 473 473 TYR TYR A . n A 1 228 LEU 228 474 474 LEU LEU A . n A 1 229 GLY 229 475 475 GLY GLY A . n A 1 230 VAL 230 476 476 VAL VAL A . n A 1 231 CYS 231 477 477 CYS CYS A . n A 1 232 ARG 232 478 478 ARG ARG A . n A 1 233 LEU 233 479 479 LEU LEU A . n A 1 234 PRO 234 480 480 PRO PRO A . n A 1 235 GLY 235 481 481 GLY GLY A . n A 1 236 PRO 236 482 482 PRO PRO A . n A 1 237 GLY 237 483 483 GLY GLY A . n A 1 238 ARG 238 484 484 ARG ARG A . n A 1 239 ARG 239 485 485 ARG ARG A . n A 1 240 HIS 240 486 486 HIS HIS A . n A 1 241 ARG 241 487 487 ARG ARG A . n A 1 242 ARG 242 488 488 ARG ARG A . n A 1 243 LEU 243 489 489 LEU LEU A . n A 1 244 ASP 244 490 490 ASP ASP A . n A 1 245 ILE 245 491 491 ILE ILE A . n A 1 246 ILE 246 492 492 ILE ILE A . n A 1 247 VAL 247 493 493 VAL VAL A . n A 1 248 VAL 248 494 494 VAL VAL A . n A 1 249 PRO 249 495 495 PRO PRO A . n A 1 250 TYR 250 496 496 TYR TYR A . n A 1 251 SER 251 497 497 SER SER A . n A 1 252 GLU 252 498 498 GLU GLU A . n A 1 253 PHE 253 499 499 PHE PHE A . n A 1 254 ALA 254 500 500 ALA ALA A . n A 1 255 CYS 255 501 501 CYS CYS A . n A 1 256 ALA 256 502 502 ALA ALA A . n A 1 257 LEU 257 503 503 LEU LEU A . n A 1 258 LEU 258 504 504 LEU LEU A . n A 1 259 TYR 259 505 505 TYR TYR A . n A 1 260 PHE 260 506 506 PHE PHE A . n A 1 261 THR 261 507 507 THR THR A . n A 1 262 GLY 262 508 508 GLY GLY A . n A 1 263 SER 263 509 509 SER SER A . n A 1 264 ALA 264 510 510 ALA ALA A . n A 1 265 HIS 265 511 511 HIS HIS A . n A 1 266 PHE 266 512 512 PHE PHE A . n A 1 267 ASN 267 513 513 ASN ASN A . n A 1 268 ARG 268 514 514 ARG ARG A . n A 1 269 SER 269 515 515 SER SER A . n A 1 270 MET 270 516 516 MET MET A . n A 1 271 ARG 271 517 517 ARG ARG A . n A 1 272 ALA 272 518 518 ALA ALA A . n A 1 273 LEU 273 519 519 LEU LEU A . n A 1 274 ALA 274 520 520 ALA ALA A . n A 1 275 LYS 275 521 521 LYS LYS A . n A 1 276 THR 276 522 522 THR THR A . n A 1 277 LYS 277 523 523 LYS LYS A . n A 1 278 GLY 278 524 524 GLY GLY A . n A 1 279 MET 279 525 525 MET MET A . n A 1 280 SER 280 526 526 SER SER A . n A 1 281 LEU 281 527 527 LEU LEU A . n A 1 282 SER 282 528 528 SER SER A . n A 1 283 GLU 283 529 529 GLU GLU A . n A 1 284 HIS 284 530 530 HIS HIS A . n A 1 285 ALA 285 531 531 ALA ALA A . n A 1 286 LEU 286 532 532 LEU LEU A . n A 1 287 SER 287 533 533 SER SER A . n A 1 288 THR 288 534 534 THR THR A . n A 1 289 ALA 289 535 535 ALA ALA A . n A 1 290 VAL 290 536 536 VAL VAL A . n A 1 291 VAL 291 537 537 VAL VAL A . n A 1 292 ARG 292 538 538 ARG ARG A . n A 1 293 ASN 293 539 539 ASN ASN A . n A 1 294 THR 294 540 540 THR THR A . n A 1 295 HIS 295 541 541 HIS HIS A . n A 1 296 GLY 296 542 542 GLY GLY A . n A 1 297 ALA 297 543 543 ALA ALA A . n A 1 298 LYS 298 544 544 LYS LYS A . n A 1 299 VAL 299 545 545 VAL VAL A . n A 1 300 GLY 300 546 546 GLY GLY A . n A 1 301 PRO 301 547 547 PRO PRO A . n A 1 302 GLY 302 548 548 GLY GLY A . n A 1 303 ARG 303 549 549 ARG ARG A . n A 1 304 VAL 304 550 550 VAL VAL A . n A 1 305 LEU 305 551 551 LEU LEU A . n A 1 306 PRO 306 552 552 PRO PRO A . n A 1 307 THR 307 553 553 THR THR A . n A 1 308 PRO 308 554 554 PRO PRO A . n A 1 309 THR 309 555 555 THR THR A . n A 1 310 GLU 310 556 556 GLU GLU A . n A 1 311 LYS 311 557 557 LYS LYS A . n A 1 312 ASP 312 558 558 ASP ASP A . n A 1 313 VAL 313 559 559 VAL VAL A . n A 1 314 PHE 314 560 560 PHE PHE A . n A 1 315 ARG 315 561 561 ARG ARG A . n A 1 316 LEU 316 562 562 LEU LEU A . n A 1 317 LEU 317 563 563 LEU LEU A . n A 1 318 GLY 318 564 564 GLY GLY A . n A 1 319 LEU 319 565 565 LEU LEU A . n A 1 320 PRO 320 566 566 PRO PRO A . n A 1 321 TYR 321 567 567 TYR TYR A . n A 1 322 ARG 322 568 568 ARG ARG A . n A 1 323 GLU 323 569 569 GLU GLU A . n A 1 324 PRO 324 570 570 PRO PRO A . n A 1 325 ALA 325 571 571 ALA ALA A . n A 1 326 GLU 326 572 572 GLU GLU A . n A 1 327 ARG 327 573 573 ARG ARG A . n A 1 328 ASP 328 574 574 ASP ASP A . n A 1 329 TRP 329 575 575 TRP TRP A . n B 2 1 DC 1 1 1 DC DC T . n B 2 2 DG 2 2 2 DG DG T . n B 2 3 DG 3 3 3 DG DG T . n B 2 4 DC 4 4 4 DC DC T . n B 2 5 DT 5 5 5 DT DT T . n B 2 6 DG 6 6 6 DG DG T . n B 2 7 DT 7 7 7 DT DT T . n B 2 8 DA 8 8 8 DA DA T . n B 2 9 DC 9 9 9 DC DC T . n B 2 10 DT 10 10 10 DT DT T . n B 2 11 DG 11 11 11 DG DG T . n C 3 1 DC 1 1 1 DC DC P . n C 3 2 DA 2 2 2 DA DA P . n C 3 3 DG 3 3 3 DG DG P . n C 3 4 DT 4 4 4 DT DT P . n C 3 5 DA 5 5 5 DA DA P . n C 3 6 C 6 6 6 C C P . n C 3 7 DA 7 7 7 DA DA P . n D 4 1 DG 1 1 1 DG DG D . n D 4 2 DC 2 2 2 DC DC D . n D 4 3 DC 3 3 3 DC DC D . n D 4 4 DG 4 4 4 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PPV 1 576 412 PPV PPV A . F 6 MG 1 1 1 MG MG A . G 7 NA 1 3 3 NA NA A . H 8 HOH 1 2 2 HOH HOH A . H 8 HOH 2 4 4 HOH HOH A . H 8 HOH 3 5 5 HOH HOH A . H 8 HOH 4 6 6 HOH HOH A . H 8 HOH 5 9 9 HOH HOH A . H 8 HOH 6 10 10 HOH HOH A . H 8 HOH 7 12 12 HOH HOH A . H 8 HOH 8 13 13 HOH HOH A . H 8 HOH 9 14 14 HOH HOH A . H 8 HOH 10 15 15 HOH HOH A . H 8 HOH 11 17 17 HOH HOH A . H 8 HOH 12 19 19 HOH HOH A . H 8 HOH 13 20 20 HOH HOH A . H 8 HOH 14 21 21 HOH HOH A . H 8 HOH 15 22 22 HOH HOH A . H 8 HOH 16 23 23 HOH HOH A . H 8 HOH 17 24 24 HOH HOH A . H 8 HOH 18 26 26 HOH HOH A . H 8 HOH 19 27 27 HOH HOH A . H 8 HOH 20 28 28 HOH HOH A . H 8 HOH 21 29 29 HOH HOH A . H 8 HOH 22 30 30 HOH HOH A . H 8 HOH 23 34 34 HOH HOH A . H 8 HOH 24 35 35 HOH HOH A . H 8 HOH 25 36 36 HOH HOH A . H 8 HOH 26 37 37 HOH HOH A . H 8 HOH 27 38 38 HOH HOH A . H 8 HOH 28 39 39 HOH HOH A . H 8 HOH 29 40 40 HOH HOH A . H 8 HOH 30 43 43 HOH HOH A . H 8 HOH 31 44 44 HOH HOH A . H 8 HOH 32 45 45 HOH HOH A . H 8 HOH 33 51 51 HOH HOH A . H 8 HOH 34 52 52 HOH HOH A . H 8 HOH 35 55 55 HOH HOH A . H 8 HOH 36 58 58 HOH HOH A . H 8 HOH 37 59 59 HOH HOH A . H 8 HOH 38 61 61 HOH HOH A . H 8 HOH 39 62 62 HOH HOH A . H 8 HOH 40 64 64 HOH HOH A . H 8 HOH 41 65 65 HOH HOH A . H 8 HOH 42 67 67 HOH HOH A . H 8 HOH 43 69 69 HOH HOH A . H 8 HOH 44 70 70 HOH HOH A . H 8 HOH 45 71 71 HOH HOH A . H 8 HOH 46 72 72 HOH HOH A . H 8 HOH 47 74 74 HOH HOH A . H 8 HOH 48 77 77 HOH HOH A . H 8 HOH 49 78 78 HOH HOH A . H 8 HOH 50 79 79 HOH HOH A . H 8 HOH 51 80 80 HOH HOH A . H 8 HOH 52 81 81 HOH HOH A . H 8 HOH 53 83 83 HOH HOH A . H 8 HOH 54 84 84 HOH HOH A . H 8 HOH 55 86 86 HOH HOH A . H 8 HOH 56 87 87 HOH HOH A . H 8 HOH 57 88 88 HOH HOH A . H 8 HOH 58 89 89 HOH HOH A . H 8 HOH 59 92 92 HOH HOH A . H 8 HOH 60 93 93 HOH HOH A . H 8 HOH 61 94 94 HOH HOH A . H 8 HOH 62 95 95 HOH HOH A . H 8 HOH 63 96 96 HOH HOH A . H 8 HOH 64 97 97 HOH HOH A . H 8 HOH 65 99 99 HOH HOH A . H 8 HOH 66 100 100 HOH HOH A . H 8 HOH 67 101 101 HOH HOH A . H 8 HOH 68 102 102 HOH HOH A . H 8 HOH 69 103 103 HOH HOH A . H 8 HOH 70 104 104 HOH HOH A . H 8 HOH 71 106 106 HOH HOH A . H 8 HOH 72 108 108 HOH HOH A . H 8 HOH 73 111 111 HOH HOH A . H 8 HOH 74 112 112 HOH HOH A . H 8 HOH 75 114 114 HOH HOH A . H 8 HOH 76 115 115 HOH HOH A . H 8 HOH 77 117 117 HOH HOH A . H 8 HOH 78 118 118 HOH HOH A . H 8 HOH 79 119 119 HOH HOH A . H 8 HOH 80 577 1 HOH HOH A . H 8 HOH 81 578 3 HOH HOH A . I 8 HOH 1 12 7 HOH HOH T . I 8 HOH 2 13 11 HOH HOH T . I 8 HOH 3 16 16 HOH HOH T . I 8 HOH 4 31 31 HOH HOH T . I 8 HOH 5 42 42 HOH HOH T . I 8 HOH 6 49 49 HOH HOH T . I 8 HOH 7 56 56 HOH HOH T . I 8 HOH 8 57 57 HOH HOH T . I 8 HOH 9 68 68 HOH HOH T . I 8 HOH 10 75 75 HOH HOH T . I 8 HOH 11 91 91 HOH HOH T . I 8 HOH 12 98 98 HOH HOH T . J 8 HOH 1 8 8 HOH HOH P . J 8 HOH 2 18 18 HOH HOH P . J 8 HOH 3 25 25 HOH HOH P . J 8 HOH 4 32 32 HOH HOH P . J 8 HOH 5 33 33 HOH HOH P . J 8 HOH 6 41 41 HOH HOH P . J 8 HOH 7 46 46 HOH HOH P . J 8 HOH 8 47 47 HOH HOH P . J 8 HOH 9 48 48 HOH HOH P . J 8 HOH 10 50 50 HOH HOH P . J 8 HOH 11 53 53 HOH HOH P . J 8 HOH 12 54 54 HOH HOH P . J 8 HOH 13 60 60 HOH HOH P . J 8 HOH 14 73 73 HOH HOH P . J 8 HOH 15 82 82 HOH HOH P . J 8 HOH 16 105 105 HOH HOH P . J 8 HOH 17 109 109 HOH HOH P . J 8 HOH 18 116 116 HOH HOH P . K 8 HOH 1 76 76 HOH HOH D . K 8 HOH 2 90 90 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5270 ? 1 MORE -59 ? 1 'SSA (A^2)' 16900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 86.5 ? 2 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 90.3 ? 3 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 91.2 ? 4 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O21 A E PPV . ? A PPV 576 ? 1_555 92.8 ? 5 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O21 A E PPV . ? A PPV 576 ? 1_555 164.2 ? 6 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O21 A E PPV . ? A PPV 576 ? 1_555 104.7 ? 7 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 A E PPV . ? A PPV 576 ? 1_555 97.2 ? 8 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 A E PPV . ? A PPV 576 ? 1_555 88.9 ? 9 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 A E PPV . ? A PPV 576 ? 1_555 172.5 ? 10 O21 A E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 A E PPV . ? A PPV 576 ? 1_555 75.5 ? 11 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 B E PPV . ? A PPV 576 ? 1_555 104.2 ? 12 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 B E PPV . ? A PPV 576 ? 1_555 97.7 ? 13 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 B E PPV . ? A PPV 576 ? 1_555 163.4 ? 14 O21 A E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 B E PPV . ? A PPV 576 ? 1_555 67.1 ? 15 O32 A E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 O32 B E PPV . ? A PPV 576 ? 1_555 11.0 ? 16 O ? H HOH . ? A HOH 44 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 158.9 ? 17 OD1 ? A ASP 186 ? A ASP 427 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 79.4 ? 18 OD1 ? A ASP 188 ? A ASP 429 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 74.5 ? 19 O21 A E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 105.0 ? 20 O32 A E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 98.1 ? 21 O32 B E PPV . ? A PPV 576 ? 1_555 MG ? F MG . ? A MG 1 ? 1_555 OP1 ? C DA 7 ? P DA 7 ? 1_555 93.3 ? 22 O ? A SER 98 ? A SER 339 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? A ILE 100 ? A ILE 341 ? 1_555 99.5 ? 23 O ? A SER 98 ? A SER 339 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? A ALA 103 ? A ALA 344 ? 1_555 85.4 ? 24 O ? A ILE 100 ? A ILE 341 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? A ALA 103 ? A ALA 344 ? 1_555 87.2 ? 25 O ? A SER 98 ? A SER 339 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 OP1 ? C DA 5 ? P DA 5 ? 1_555 158.9 ? 26 O ? A ILE 100 ? A ILE 341 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 OP1 ? C DA 5 ? P DA 5 ? 1_555 101.5 ? 27 O ? A ALA 103 ? A ALA 344 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 OP1 ? C DA 5 ? P DA 5 ? 1_555 96.6 ? 28 O ? A SER 98 ? A SER 339 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? J HOH . ? P HOH 50 ? 1_555 90.0 ? 29 O ? A ILE 100 ? A ILE 341 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? J HOH . ? P HOH 50 ? 1_555 100.0 ? 30 O ? A ALA 103 ? A ALA 344 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? J HOH . ? P HOH 50 ? 1_555 172.0 ? 31 OP1 ? C DA 5 ? P DA 5 ? 1_555 NA ? G NA . ? A NA 3 ? 1_555 O ? J HOH . ? P HOH 50 ? 1_555 85.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-23 2 'Structure model' 1 1 2012-07-18 3 'Structure model' 1 2 2012-09-26 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 22 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_ref_seq_dif.details' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.2_868)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_entry_details.entry_id 3UQ2 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHORS STATE THAT THIS IS A DELETION-SUBSTITUTION MUTANT, WITH RESIDUES SQEENGQQQ IN THE WILDTYPE SUBSTITUTED BY RESIDUES KGET. HOWEVER, THE RESIDUE NUMBERING WAS KEPT CONSISTENT WITH THE WT PROTEIN. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.482 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" T DC 1 ? ? "C2'" T DC 1 ? ? "C1'" T DC 1 ? ? 97.46 102.40 -4.94 0.80 N 2 1 "C3'" T DG 2 ? ? "C2'" T DG 2 ? ? "C1'" T DG 2 ? ? 97.35 102.40 -5.05 0.80 N 3 1 "O4'" T DG 2 ? ? "C1'" T DG 2 ? ? N9 T DG 2 ? ? 114.01 108.30 5.71 0.30 N 4 1 "O4'" T DC 4 ? ? "C1'" T DC 4 ? ? N1 T DC 4 ? ? 110.60 108.30 2.30 0.30 N 5 1 "O4'" T DT 10 ? ? "C1'" T DT 10 ? ? N1 T DT 10 ? ? 102.83 108.00 -5.17 0.70 N 6 1 "O4'" P DT 4 ? ? "C1'" P DT 4 ? ? N1 P DT 4 ? ? 110.97 108.30 2.67 0.30 N 7 1 "O4'" P DA 7 ? ? "C1'" P DA 7 ? ? N9 P DA 7 ? ? 110.56 108.30 2.26 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 254 ? ? -150.33 -12.08 2 1 PHE A 406 ? ? -93.61 -65.33 3 1 CYS A 415 ? ? -126.04 -155.19 4 1 ARG A 441 ? ? 74.14 -20.34 5 1 SER A 509 ? ? -66.71 -179.71 6 1 ASN A 539 ? ? -69.13 -177.02 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 254 ? CG ? A LEU 13 CG 2 1 Y 1 A LEU 254 ? CD1 ? A LEU 13 CD1 3 1 Y 1 A LEU 254 ? CD2 ? A LEU 13 CD2 4 1 Y 1 A HIS 255 ? CG ? A HIS 14 CG 5 1 Y 1 A HIS 255 ? ND1 ? A HIS 14 ND1 6 1 Y 1 A HIS 255 ? CD2 ? A HIS 14 CD2 7 1 Y 1 A HIS 255 ? CE1 ? A HIS 14 CE1 8 1 Y 1 A HIS 255 ? NE2 ? A HIS 14 NE2 9 1 Y 1 A ILE 256 ? CG1 ? A ILE 15 CG1 10 1 Y 1 A ILE 256 ? CG2 ? A ILE 15 CG2 11 1 Y 1 A ILE 256 ? CD1 ? A ILE 15 CD1 12 1 Y 1 A GLU 258 ? CG ? A GLU 17 CG 13 1 Y 1 A GLU 258 ? CD ? A GLU 17 CD 14 1 Y 1 A GLU 258 ? OE1 ? A GLU 17 OE1 15 1 Y 1 A GLU 258 ? OE2 ? A GLU 17 OE2 16 1 Y 1 A LYS 259 ? CG ? A LYS 18 CG 17 1 Y 1 A LYS 259 ? CD ? A LYS 18 CD 18 1 Y 1 A LYS 259 ? CE ? A LYS 18 CE 19 1 Y 1 A LYS 259 ? NZ ? A LYS 18 NZ 20 1 Y 1 A GLU 261 ? OE1 ? A GLU 20 OE1 21 1 Y 1 A GLU 261 ? OE2 ? A GLU 20 OE2 22 1 Y 1 A LYS 265 ? CE ? A LYS 24 CE 23 1 Y 1 A LYS 265 ? NZ ? A LYS 24 NZ 24 1 Y 1 A LYS 291 ? CG ? A LYS 50 CG 25 1 Y 1 A LYS 291 ? CD ? A LYS 50 CD 26 1 Y 1 A LYS 291 ? CE ? A LYS 50 CE 27 1 Y 1 A LYS 291 ? NZ ? A LYS 50 NZ 28 1 Y 1 A VAL 293 ? CG1 ? A VAL 52 CG1 29 1 Y 1 A VAL 293 ? CG2 ? A VAL 52 CG2 30 1 Y 1 A GLN 297 ? CG ? A GLN 56 CG 31 1 Y 1 A GLN 297 ? CD ? A GLN 56 CD 32 1 Y 1 A GLN 297 ? OE1 ? A GLN 56 OE1 33 1 Y 1 A GLN 297 ? NE2 ? A GLN 56 NE2 34 1 Y 1 A SER 301 ? OG ? A SER 60 OG 35 1 Y 1 A LYS 307 ? CG ? A LYS 66 CG 36 1 Y 1 A LYS 307 ? CD ? A LYS 66 CD 37 1 Y 1 A LYS 307 ? CE ? A LYS 66 CE 38 1 Y 1 A LYS 307 ? NZ ? A LYS 66 NZ 39 1 Y 1 A ILE 314 ? CG1 ? A ILE 73 CG1 40 1 Y 1 A ILE 314 ? CG2 ? A ILE 73 CG2 41 1 Y 1 A ILE 314 ? CD1 ? A ILE 73 CD1 42 1 Y 1 A GLU 318 ? CD ? A GLU 77 CD 43 1 Y 1 A GLU 318 ? OE1 ? A GLU 77 OE1 44 1 Y 1 A GLU 318 ? OE2 ? A GLU 77 OE2 45 1 Y 1 A SER 319 ? OG ? A SER 78 OG 46 1 Y 1 A ARG 323 ? CG ? A ARG 82 CG 47 1 Y 1 A ARG 323 ? CD ? A ARG 82 CD 48 1 Y 1 A ARG 323 ? NE ? A ARG 82 NE 49 1 Y 1 A ARG 323 ? CZ ? A ARG 82 CZ 50 1 Y 1 A ARG 323 ? NH1 ? A ARG 82 NH1 51 1 Y 1 A ARG 323 ? NH2 ? A ARG 82 NH2 52 1 Y 1 A LYS 324 ? CE ? A LYS 83 CE 53 1 Y 1 A LYS 324 ? NZ ? A LYS 83 NZ 54 1 Y 1 A GLU 330 ? CD ? A GLU 89 CD 55 1 Y 1 A GLU 330 ? OE1 ? A GLU 89 OE1 56 1 Y 1 A GLU 330 ? OE2 ? A GLU 89 OE2 57 1 Y 1 A GLU 336 ? CD ? A GLU 95 CD 58 1 Y 1 A GLU 336 ? OE1 ? A GLU 95 OE1 59 1 Y 1 A GLU 336 ? OE2 ? A GLU 95 OE2 60 1 Y 1 A LYS 401 ? CG ? A LYS 160 CG 61 1 Y 1 A LYS 401 ? CD ? A LYS 160 CD 62 1 Y 1 A LYS 401 ? CE ? A LYS 160 CE 63 1 Y 1 A LYS 401 ? NZ ? A LYS 160 NZ 64 1 Y 1 A SER 408 ? OG ? A SER 167 OG 65 1 Y 1 A LEU 411 ? CG ? A LEU 170 CG 66 1 Y 1 A LEU 411 ? CD1 ? A LEU 170 CD1 67 1 Y 1 A LEU 411 ? CD2 ? A LEU 170 CD2 68 1 Y 1 A ARG 438 ? CG ? A ARG 197 CG 69 1 Y 1 A ARG 438 ? CD ? A ARG 197 CD 70 1 Y 1 A ARG 438 ? NE ? A ARG 197 NE 71 1 Y 1 A ARG 438 ? CZ ? A ARG 197 CZ 72 1 Y 1 A ARG 438 ? NH1 ? A ARG 197 NH1 73 1 Y 1 A ARG 438 ? NH2 ? A ARG 197 NH2 74 1 Y 1 A ARG 441 ? CG ? A ARG 200 CG 75 1 Y 1 A ARG 441 ? CD ? A ARG 200 CD 76 1 Y 1 A ARG 441 ? NE ? A ARG 200 NE 77 1 Y 1 A ARG 441 ? CZ ? A ARG 200 CZ 78 1 Y 1 A ARG 441 ? NH1 ? A ARG 200 NH1 79 1 Y 1 A ARG 441 ? NH2 ? A ARG 200 NH2 80 1 Y 1 A ILE 443 ? CG1 ? A ILE 202 CG1 81 1 Y 1 A ILE 443 ? CG2 ? A ILE 202 CG2 82 1 Y 1 A ILE 443 ? CD1 ? A ILE 202 CD1 83 1 Y 1 A ARG 446 ? CG ? A ARG 205 CG 84 1 Y 1 A ARG 446 ? CD ? A ARG 205 CD 85 1 Y 1 A ARG 446 ? NE ? A ARG 205 NE 86 1 Y 1 A ARG 446 ? CZ ? A ARG 205 CZ 87 1 Y 1 A ARG 446 ? NH1 ? A ARG 205 NH1 88 1 Y 1 A ARG 446 ? NH2 ? A ARG 205 NH2 89 1 Y 1 A GLN 453 ? CG ? A GLN 212 CG 90 1 Y 1 A GLN 453 ? CD ? A GLN 212 CD 91 1 Y 1 A GLN 453 ? OE1 ? A GLN 212 OE1 92 1 Y 1 A GLN 453 ? NE2 ? A GLN 212 NE2 93 1 Y 1 A LYS 463 ? CD ? A LYS 222 CD 94 1 Y 1 A LYS 463 ? CE ? A LYS 222 CE 95 1 Y 1 A LYS 463 ? NZ ? A LYS 222 NZ 96 1 Y 1 A GLU 470 ? CD ? A GLU 224 CD 97 1 Y 1 A GLU 470 ? OE1 ? A GLU 224 OE1 98 1 Y 1 A GLU 470 ? OE2 ? A GLU 224 OE2 99 1 Y 1 A ARG 568 ? NH1 ? A ARG 322 NH1 100 1 Y 1 A ARG 568 ? NH2 ? A ARG 322 NH2 101 1 Y 1 A GLU 572 ? CG ? A GLU 326 CG 102 1 Y 1 A GLU 572 ? CD ? A GLU 326 CD 103 1 Y 1 A GLU 572 ? OE1 ? A GLU 326 OE1 104 1 Y 1 A GLU 572 ? OE2 ? A GLU 326 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 242 ? A ALA 1 2 1 Y 1 A GLN 243 ? A GLN 2 3 1 Y 1 A PRO 244 ? A PRO 3 4 1 Y 1 A SER 245 ? A SER 4 5 1 Y 1 A SER 246 ? A SER 5 6 1 Y 1 A GLN 247 ? A GLN 6 7 1 Y 1 A LYS 248 ? A LYS 7 8 1 Y 1 A ALA 249 ? A ALA 8 9 1 Y 1 A THR 250 ? A THR 9 10 1 Y 1 A ASN 251 ? A ASN 10 11 1 Y 1 A HIS 252 ? A HIS 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C OP3 O N N 74 C P P N N 75 C OP1 O N N 76 C OP2 O N N 77 C "O5'" O N N 78 C "C5'" C N N 79 C "C4'" C N R 80 C "O4'" O N N 81 C "C3'" C N S 82 C "O3'" O N N 83 C "C2'" C N R 84 C "O2'" O N N 85 C "C1'" C N R 86 C N1 N N N 87 C C2 C N N 88 C O2 O N N 89 C N3 N N N 90 C C4 C N N 91 C N4 N N N 92 C C5 C N N 93 C C6 C N N 94 C HOP3 H N N 95 C HOP2 H N N 96 C "H5'" H N N 97 C "H5''" H N N 98 C "H4'" H N N 99 C "H3'" H N N 100 C "HO3'" H N N 101 C "H2'" H N N 102 C "HO2'" H N N 103 C "H1'" H N N 104 C H41 H N N 105 C H42 H N N 106 C H5 H N N 107 C H6 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 DA OP3 O N N 123 DA P P N N 124 DA OP1 O N N 125 DA OP2 O N N 126 DA "O5'" O N N 127 DA "C5'" C N N 128 DA "C4'" C N R 129 DA "O4'" O N N 130 DA "C3'" C N S 131 DA "O3'" O N N 132 DA "C2'" C N N 133 DA "C1'" C N R 134 DA N9 N Y N 135 DA C8 C Y N 136 DA N7 N Y N 137 DA C5 C Y N 138 DA C6 C Y N 139 DA N6 N N N 140 DA N1 N Y N 141 DA C2 C Y N 142 DA N3 N Y N 143 DA C4 C Y N 144 DA HOP3 H N N 145 DA HOP2 H N N 146 DA "H5'" H N N 147 DA "H5''" H N N 148 DA "H4'" H N N 149 DA "H3'" H N N 150 DA "HO3'" H N N 151 DA "H2'" H N N 152 DA "H2''" H N N 153 DA "H1'" H N N 154 DA H8 H N N 155 DA H61 H N N 156 DA H62 H N N 157 DA H2 H N N 158 DC OP3 O N N 159 DC P P N N 160 DC OP1 O N N 161 DC OP2 O N N 162 DC "O5'" O N N 163 DC "C5'" C N N 164 DC "C4'" C N R 165 DC "O4'" O N N 166 DC "C3'" C N S 167 DC "O3'" O N N 168 DC "C2'" C N N 169 DC "C1'" C N R 170 DC N1 N N N 171 DC C2 C N N 172 DC O2 O N N 173 DC N3 N N N 174 DC C4 C N N 175 DC N4 N N N 176 DC C5 C N N 177 DC C6 C N N 178 DC HOP3 H N N 179 DC HOP2 H N N 180 DC "H5'" H N N 181 DC "H5''" H N N 182 DC "H4'" H N N 183 DC "H3'" H N N 184 DC "HO3'" H N N 185 DC "H2'" H N N 186 DC "H2''" H N N 187 DC "H1'" H N N 188 DC H41 H N N 189 DC H42 H N N 190 DC H5 H N N 191 DC H6 H N N 192 DG OP3 O N N 193 DG P P N N 194 DG OP1 O N N 195 DG OP2 O N N 196 DG "O5'" O N N 197 DG "C5'" C N N 198 DG "C4'" C N R 199 DG "O4'" O N N 200 DG "C3'" C N S 201 DG "O3'" O N N 202 DG "C2'" C N N 203 DG "C1'" C N R 204 DG N9 N Y N 205 DG C8 C Y N 206 DG N7 N Y N 207 DG C5 C Y N 208 DG C6 C N N 209 DG O6 O N N 210 DG N1 N N N 211 DG C2 C N N 212 DG N2 N N N 213 DG N3 N N N 214 DG C4 C Y N 215 DG HOP3 H N N 216 DG HOP2 H N N 217 DG "H5'" H N N 218 DG "H5''" H N N 219 DG "H4'" H N N 220 DG "H3'" H N N 221 DG "HO3'" H N N 222 DG "H2'" H N N 223 DG "H2''" H N N 224 DG "H1'" H N N 225 DG H8 H N N 226 DG H1 H N N 227 DG H21 H N N 228 DG H22 H N N 229 DT OP3 O N N 230 DT P P N N 231 DT OP1 O N N 232 DT OP2 O N N 233 DT "O5'" O N N 234 DT "C5'" C N N 235 DT "C4'" C N R 236 DT "O4'" O N N 237 DT "C3'" C N S 238 DT "O3'" O N N 239 DT "C2'" C N N 240 DT "C1'" C N R 241 DT N1 N N N 242 DT C2 C N N 243 DT O2 O N N 244 DT N3 N N N 245 DT C4 C N N 246 DT O4 O N N 247 DT C5 C N N 248 DT C7 C N N 249 DT C6 C N N 250 DT HOP3 H N N 251 DT HOP2 H N N 252 DT "H5'" H N N 253 DT "H5''" H N N 254 DT "H4'" H N N 255 DT "H3'" H N N 256 DT "HO3'" H N N 257 DT "H2'" H N N 258 DT "H2''" H N N 259 DT "H1'" H N N 260 DT H3 H N N 261 DT H71 H N N 262 DT H72 H N N 263 DT H73 H N N 264 DT H6 H N N 265 GLN N N N N 266 GLN CA C N S 267 GLN C C N N 268 GLN O O N N 269 GLN CB C N N 270 GLN CG C N N 271 GLN CD C N N 272 GLN OE1 O N N 273 GLN NE2 N N N 274 GLN OXT O N N 275 GLN H H N N 276 GLN H2 H N N 277 GLN HA H N N 278 GLN HB2 H N N 279 GLN HB3 H N N 280 GLN HG2 H N N 281 GLN HG3 H N N 282 GLN HE21 H N N 283 GLN HE22 H N N 284 GLN HXT H N N 285 GLU N N N N 286 GLU CA C N S 287 GLU C C N N 288 GLU O O N N 289 GLU CB C N N 290 GLU CG C N N 291 GLU CD C N N 292 GLU OE1 O N N 293 GLU OE2 O N N 294 GLU OXT O N N 295 GLU H H N N 296 GLU H2 H N N 297 GLU HA H N N 298 GLU HB2 H N N 299 GLU HB3 H N N 300 GLU HG2 H N N 301 GLU HG3 H N N 302 GLU HE2 H N N 303 GLU HXT H N N 304 GLY N N N N 305 GLY CA C N N 306 GLY C C N N 307 GLY O O N N 308 GLY OXT O N N 309 GLY H H N N 310 GLY H2 H N N 311 GLY HA2 H N N 312 GLY HA3 H N N 313 GLY HXT H N N 314 HIS N N N N 315 HIS CA C N S 316 HIS C C N N 317 HIS O O N N 318 HIS CB C N N 319 HIS CG C Y N 320 HIS ND1 N Y N 321 HIS CD2 C Y N 322 HIS CE1 C Y N 323 HIS NE2 N Y N 324 HIS OXT O N N 325 HIS H H N N 326 HIS H2 H N N 327 HIS HA H N N 328 HIS HB2 H N N 329 HIS HB3 H N N 330 HIS HD1 H N N 331 HIS HD2 H N N 332 HIS HE1 H N N 333 HIS HE2 H N N 334 HIS HXT H N N 335 HOH O O N N 336 HOH H1 H N N 337 HOH H2 H N N 338 ILE N N N N 339 ILE CA C N S 340 ILE C C N N 341 ILE O O N N 342 ILE CB C N S 343 ILE CG1 C N N 344 ILE CG2 C N N 345 ILE CD1 C N N 346 ILE OXT O N N 347 ILE H H N N 348 ILE H2 H N N 349 ILE HA H N N 350 ILE HB H N N 351 ILE HG12 H N N 352 ILE HG13 H N N 353 ILE HG21 H N N 354 ILE HG22 H N N 355 ILE HG23 H N N 356 ILE HD11 H N N 357 ILE HD12 H N N 358 ILE HD13 H N N 359 ILE HXT H N N 360 LEU N N N N 361 LEU CA C N S 362 LEU C C N N 363 LEU O O N N 364 LEU CB C N N 365 LEU CG C N N 366 LEU CD1 C N N 367 LEU CD2 C N N 368 LEU OXT O N N 369 LEU H H N N 370 LEU H2 H N N 371 LEU HA H N N 372 LEU HB2 H N N 373 LEU HB3 H N N 374 LEU HG H N N 375 LEU HD11 H N N 376 LEU HD12 H N N 377 LEU HD13 H N N 378 LEU HD21 H N N 379 LEU HD22 H N N 380 LEU HD23 H N N 381 LEU HXT H N N 382 LYS N N N N 383 LYS CA C N S 384 LYS C C N N 385 LYS O O N N 386 LYS CB C N N 387 LYS CG C N N 388 LYS CD C N N 389 LYS CE C N N 390 LYS NZ N N N 391 LYS OXT O N N 392 LYS H H N N 393 LYS H2 H N N 394 LYS HA H N N 395 LYS HB2 H N N 396 LYS HB3 H N N 397 LYS HG2 H N N 398 LYS HG3 H N N 399 LYS HD2 H N N 400 LYS HD3 H N N 401 LYS HE2 H N N 402 LYS HE3 H N N 403 LYS HZ1 H N N 404 LYS HZ2 H N N 405 LYS HZ3 H N N 406 LYS HXT H N N 407 MET N N N N 408 MET CA C N S 409 MET C C N N 410 MET O O N N 411 MET CB C N N 412 MET CG C N N 413 MET SD S N N 414 MET CE C N N 415 MET OXT O N N 416 MET H H N N 417 MET H2 H N N 418 MET HA H N N 419 MET HB2 H N N 420 MET HB3 H N N 421 MET HG2 H N N 422 MET HG3 H N N 423 MET HE1 H N N 424 MET HE2 H N N 425 MET HE3 H N N 426 MET HXT H N N 427 MG MG MG N N 428 NA NA NA N N 429 PHE N N N N 430 PHE CA C N S 431 PHE C C N N 432 PHE O O N N 433 PHE CB C N N 434 PHE CG C Y N 435 PHE CD1 C Y N 436 PHE CD2 C Y N 437 PHE CE1 C Y N 438 PHE CE2 C Y N 439 PHE CZ C Y N 440 PHE OXT O N N 441 PHE H H N N 442 PHE H2 H N N 443 PHE HA H N N 444 PHE HB2 H N N 445 PHE HB3 H N N 446 PHE HD1 H N N 447 PHE HD2 H N N 448 PHE HE1 H N N 449 PHE HE2 H N N 450 PHE HZ H N N 451 PHE HXT H N N 452 PPV O11 O N N 453 PPV P1 P N N 454 PPV O21 O N N 455 PPV O31 O N N 456 PPV OPP O N N 457 PPV P2 P N N 458 PPV O12 O N N 459 PPV O22 O N N 460 PPV O32 O N N 461 PPV H11 H N N 462 PPV H21 H N N 463 PPV H12 H N N 464 PPV H32 H N N 465 PRO N N N N 466 PRO CA C N S 467 PRO C C N N 468 PRO O O N N 469 PRO CB C N N 470 PRO CG C N N 471 PRO CD C N N 472 PRO OXT O N N 473 PRO H H N N 474 PRO HA H N N 475 PRO HB2 H N N 476 PRO HB3 H N N 477 PRO HG2 H N N 478 PRO HG3 H N N 479 PRO HD2 H N N 480 PRO HD3 H N N 481 PRO HXT H N N 482 SER N N N N 483 SER CA C N S 484 SER C C N N 485 SER O O N N 486 SER CB C N N 487 SER OG O N N 488 SER OXT O N N 489 SER H H N N 490 SER H2 H N N 491 SER HA H N N 492 SER HB2 H N N 493 SER HB3 H N N 494 SER HG H N N 495 SER HXT H N N 496 THR N N N N 497 THR CA C N S 498 THR C C N N 499 THR O O N N 500 THR CB C N R 501 THR OG1 O N N 502 THR CG2 C N N 503 THR OXT O N N 504 THR H H N N 505 THR H2 H N N 506 THR HA H N N 507 THR HB H N N 508 THR HG1 H N N 509 THR HG21 H N N 510 THR HG22 H N N 511 THR HG23 H N N 512 THR HXT H N N 513 TRP N N N N 514 TRP CA C N S 515 TRP C C N N 516 TRP O O N N 517 TRP CB C N N 518 TRP CG C Y N 519 TRP CD1 C Y N 520 TRP CD2 C Y N 521 TRP NE1 N Y N 522 TRP CE2 C Y N 523 TRP CE3 C Y N 524 TRP CZ2 C Y N 525 TRP CZ3 C Y N 526 TRP CH2 C Y N 527 TRP OXT O N N 528 TRP H H N N 529 TRP H2 H N N 530 TRP HA H N N 531 TRP HB2 H N N 532 TRP HB3 H N N 533 TRP HD1 H N N 534 TRP HE1 H N N 535 TRP HE3 H N N 536 TRP HZ2 H N N 537 TRP HZ3 H N N 538 TRP HH2 H N N 539 TRP HXT H N N 540 TYR N N N N 541 TYR CA C N S 542 TYR C C N N 543 TYR O O N N 544 TYR CB C N N 545 TYR CG C Y N 546 TYR CD1 C Y N 547 TYR CD2 C Y N 548 TYR CE1 C Y N 549 TYR CE2 C Y N 550 TYR CZ C Y N 551 TYR OH O N N 552 TYR OXT O N N 553 TYR H H N N 554 TYR H2 H N N 555 TYR HA H N N 556 TYR HB2 H N N 557 TYR HB3 H N N 558 TYR HD1 H N N 559 TYR HD2 H N N 560 TYR HE1 H N N 561 TYR HE2 H N N 562 TYR HH H N N 563 TYR HXT H N N 564 VAL N N N N 565 VAL CA C N S 566 VAL C C N N 567 VAL O O N N 568 VAL CB C N N 569 VAL CG1 C N N 570 VAL CG2 C N N 571 VAL OXT O N N 572 VAL H H N N 573 VAL H2 H N N 574 VAL HA H N N 575 VAL HB H N N 576 VAL HG11 H N N 577 VAL HG12 H N N 578 VAL HG13 H N N 579 VAL HG21 H N N 580 VAL HG22 H N N 581 VAL HG23 H N N 582 VAL HXT H N N 583 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 DA OP3 P sing N N 119 DA OP3 HOP3 sing N N 120 DA P OP1 doub N N 121 DA P OP2 sing N N 122 DA P "O5'" sing N N 123 DA OP2 HOP2 sing N N 124 DA "O5'" "C5'" sing N N 125 DA "C5'" "C4'" sing N N 126 DA "C5'" "H5'" sing N N 127 DA "C5'" "H5''" sing N N 128 DA "C4'" "O4'" sing N N 129 DA "C4'" "C3'" sing N N 130 DA "C4'" "H4'" sing N N 131 DA "O4'" "C1'" sing N N 132 DA "C3'" "O3'" sing N N 133 DA "C3'" "C2'" sing N N 134 DA "C3'" "H3'" sing N N 135 DA "O3'" "HO3'" sing N N 136 DA "C2'" "C1'" sing N N 137 DA "C2'" "H2'" sing N N 138 DA "C2'" "H2''" sing N N 139 DA "C1'" N9 sing N N 140 DA "C1'" "H1'" sing N N 141 DA N9 C8 sing Y N 142 DA N9 C4 sing Y N 143 DA C8 N7 doub Y N 144 DA C8 H8 sing N N 145 DA N7 C5 sing Y N 146 DA C5 C6 sing Y N 147 DA C5 C4 doub Y N 148 DA C6 N6 sing N N 149 DA C6 N1 doub Y N 150 DA N6 H61 sing N N 151 DA N6 H62 sing N N 152 DA N1 C2 sing Y N 153 DA C2 N3 doub Y N 154 DA C2 H2 sing N N 155 DA N3 C4 sing Y N 156 DC OP3 P sing N N 157 DC OP3 HOP3 sing N N 158 DC P OP1 doub N N 159 DC P OP2 sing N N 160 DC P "O5'" sing N N 161 DC OP2 HOP2 sing N N 162 DC "O5'" "C5'" sing N N 163 DC "C5'" "C4'" sing N N 164 DC "C5'" "H5'" sing N N 165 DC "C5'" "H5''" sing N N 166 DC "C4'" "O4'" sing N N 167 DC "C4'" "C3'" sing N N 168 DC "C4'" "H4'" sing N N 169 DC "O4'" "C1'" sing N N 170 DC "C3'" "O3'" sing N N 171 DC "C3'" "C2'" sing N N 172 DC "C3'" "H3'" sing N N 173 DC "O3'" "HO3'" sing N N 174 DC "C2'" "C1'" sing N N 175 DC "C2'" "H2'" sing N N 176 DC "C2'" "H2''" sing N N 177 DC "C1'" N1 sing N N 178 DC "C1'" "H1'" sing N N 179 DC N1 C2 sing N N 180 DC N1 C6 sing N N 181 DC C2 O2 doub N N 182 DC C2 N3 sing N N 183 DC N3 C4 doub N N 184 DC C4 N4 sing N N 185 DC C4 C5 sing N N 186 DC N4 H41 sing N N 187 DC N4 H42 sing N N 188 DC C5 C6 doub N N 189 DC C5 H5 sing N N 190 DC C6 H6 sing N N 191 DG OP3 P sing N N 192 DG OP3 HOP3 sing N N 193 DG P OP1 doub N N 194 DG P OP2 sing N N 195 DG P "O5'" sing N N 196 DG OP2 HOP2 sing N N 197 DG "O5'" "C5'" sing N N 198 DG "C5'" "C4'" sing N N 199 DG "C5'" "H5'" sing N N 200 DG "C5'" "H5''" sing N N 201 DG "C4'" "O4'" sing N N 202 DG "C4'" "C3'" sing N N 203 DG "C4'" "H4'" sing N N 204 DG "O4'" "C1'" sing N N 205 DG "C3'" "O3'" sing N N 206 DG "C3'" "C2'" sing N N 207 DG "C3'" "H3'" sing N N 208 DG "O3'" "HO3'" sing N N 209 DG "C2'" "C1'" sing N N 210 DG "C2'" "H2'" sing N N 211 DG "C2'" "H2''" sing N N 212 DG "C1'" N9 sing N N 213 DG "C1'" "H1'" sing N N 214 DG N9 C8 sing Y N 215 DG N9 C4 sing Y N 216 DG C8 N7 doub Y N 217 DG C8 H8 sing N N 218 DG N7 C5 sing Y N 219 DG C5 C6 sing N N 220 DG C5 C4 doub Y N 221 DG C6 O6 doub N N 222 DG C6 N1 sing N N 223 DG N1 C2 sing N N 224 DG N1 H1 sing N N 225 DG C2 N2 sing N N 226 DG C2 N3 doub N N 227 DG N2 H21 sing N N 228 DG N2 H22 sing N N 229 DG N3 C4 sing N N 230 DT OP3 P sing N N 231 DT OP3 HOP3 sing N N 232 DT P OP1 doub N N 233 DT P OP2 sing N N 234 DT P "O5'" sing N N 235 DT OP2 HOP2 sing N N 236 DT "O5'" "C5'" sing N N 237 DT "C5'" "C4'" sing N N 238 DT "C5'" "H5'" sing N N 239 DT "C5'" "H5''" sing N N 240 DT "C4'" "O4'" sing N N 241 DT "C4'" "C3'" sing N N 242 DT "C4'" "H4'" sing N N 243 DT "O4'" "C1'" sing N N 244 DT "C3'" "O3'" sing N N 245 DT "C3'" "C2'" sing N N 246 DT "C3'" "H3'" sing N N 247 DT "O3'" "HO3'" sing N N 248 DT "C2'" "C1'" sing N N 249 DT "C2'" "H2'" sing N N 250 DT "C2'" "H2''" sing N N 251 DT "C1'" N1 sing N N 252 DT "C1'" "H1'" sing N N 253 DT N1 C2 sing N N 254 DT N1 C6 sing N N 255 DT C2 O2 doub N N 256 DT C2 N3 sing N N 257 DT N3 C4 sing N N 258 DT N3 H3 sing N N 259 DT C4 O4 doub N N 260 DT C4 C5 sing N N 261 DT C5 C7 sing N N 262 DT C5 C6 doub N N 263 DT C7 H71 sing N N 264 DT C7 H72 sing N N 265 DT C7 H73 sing N N 266 DT C6 H6 sing N N 267 GLN N CA sing N N 268 GLN N H sing N N 269 GLN N H2 sing N N 270 GLN CA C sing N N 271 GLN CA CB sing N N 272 GLN CA HA sing N N 273 GLN C O doub N N 274 GLN C OXT sing N N 275 GLN CB CG sing N N 276 GLN CB HB2 sing N N 277 GLN CB HB3 sing N N 278 GLN CG CD sing N N 279 GLN CG HG2 sing N N 280 GLN CG HG3 sing N N 281 GLN CD OE1 doub N N 282 GLN CD NE2 sing N N 283 GLN NE2 HE21 sing N N 284 GLN NE2 HE22 sing N N 285 GLN OXT HXT sing N N 286 GLU N CA sing N N 287 GLU N H sing N N 288 GLU N H2 sing N N 289 GLU CA C sing N N 290 GLU CA CB sing N N 291 GLU CA HA sing N N 292 GLU C O doub N N 293 GLU C OXT sing N N 294 GLU CB CG sing N N 295 GLU CB HB2 sing N N 296 GLU CB HB3 sing N N 297 GLU CG CD sing N N 298 GLU CG HG2 sing N N 299 GLU CG HG3 sing N N 300 GLU CD OE1 doub N N 301 GLU CD OE2 sing N N 302 GLU OE2 HE2 sing N N 303 GLU OXT HXT sing N N 304 GLY N CA sing N N 305 GLY N H sing N N 306 GLY N H2 sing N N 307 GLY CA C sing N N 308 GLY CA HA2 sing N N 309 GLY CA HA3 sing N N 310 GLY C O doub N N 311 GLY C OXT sing N N 312 GLY OXT HXT sing N N 313 HIS N CA sing N N 314 HIS N H sing N N 315 HIS N H2 sing N N 316 HIS CA C sing N N 317 HIS CA CB sing N N 318 HIS CA HA sing N N 319 HIS C O doub N N 320 HIS C OXT sing N N 321 HIS CB CG sing N N 322 HIS CB HB2 sing N N 323 HIS CB HB3 sing N N 324 HIS CG ND1 sing Y N 325 HIS CG CD2 doub Y N 326 HIS ND1 CE1 doub Y N 327 HIS ND1 HD1 sing N N 328 HIS CD2 NE2 sing Y N 329 HIS CD2 HD2 sing N N 330 HIS CE1 NE2 sing Y N 331 HIS CE1 HE1 sing N N 332 HIS NE2 HE2 sing N N 333 HIS OXT HXT sing N N 334 HOH O H1 sing N N 335 HOH O H2 sing N N 336 ILE N CA sing N N 337 ILE N H sing N N 338 ILE N H2 sing N N 339 ILE CA C sing N N 340 ILE CA CB sing N N 341 ILE CA HA sing N N 342 ILE C O doub N N 343 ILE C OXT sing N N 344 ILE CB CG1 sing N N 345 ILE CB CG2 sing N N 346 ILE CB HB sing N N 347 ILE CG1 CD1 sing N N 348 ILE CG1 HG12 sing N N 349 ILE CG1 HG13 sing N N 350 ILE CG2 HG21 sing N N 351 ILE CG2 HG22 sing N N 352 ILE CG2 HG23 sing N N 353 ILE CD1 HD11 sing N N 354 ILE CD1 HD12 sing N N 355 ILE CD1 HD13 sing N N 356 ILE OXT HXT sing N N 357 LEU N CA sing N N 358 LEU N H sing N N 359 LEU N H2 sing N N 360 LEU CA C sing N N 361 LEU CA CB sing N N 362 LEU CA HA sing N N 363 LEU C O doub N N 364 LEU C OXT sing N N 365 LEU CB CG sing N N 366 LEU CB HB2 sing N N 367 LEU CB HB3 sing N N 368 LEU CG CD1 sing N N 369 LEU CG CD2 sing N N 370 LEU CG HG sing N N 371 LEU CD1 HD11 sing N N 372 LEU CD1 HD12 sing N N 373 LEU CD1 HD13 sing N N 374 LEU CD2 HD21 sing N N 375 LEU CD2 HD22 sing N N 376 LEU CD2 HD23 sing N N 377 LEU OXT HXT sing N N 378 LYS N CA sing N N 379 LYS N H sing N N 380 LYS N H2 sing N N 381 LYS CA C sing N N 382 LYS CA CB sing N N 383 LYS CA HA sing N N 384 LYS C O doub N N 385 LYS C OXT sing N N 386 LYS CB CG sing N N 387 LYS CB HB2 sing N N 388 LYS CB HB3 sing N N 389 LYS CG CD sing N N 390 LYS CG HG2 sing N N 391 LYS CG HG3 sing N N 392 LYS CD CE sing N N 393 LYS CD HD2 sing N N 394 LYS CD HD3 sing N N 395 LYS CE NZ sing N N 396 LYS CE HE2 sing N N 397 LYS CE HE3 sing N N 398 LYS NZ HZ1 sing N N 399 LYS NZ HZ2 sing N N 400 LYS NZ HZ3 sing N N 401 LYS OXT HXT sing N N 402 MET N CA sing N N 403 MET N H sing N N 404 MET N H2 sing N N 405 MET CA C sing N N 406 MET CA CB sing N N 407 MET CA HA sing N N 408 MET C O doub N N 409 MET C OXT sing N N 410 MET CB CG sing N N 411 MET CB HB2 sing N N 412 MET CB HB3 sing N N 413 MET CG SD sing N N 414 MET CG HG2 sing N N 415 MET CG HG3 sing N N 416 MET SD CE sing N N 417 MET CE HE1 sing N N 418 MET CE HE2 sing N N 419 MET CE HE3 sing N N 420 MET OXT HXT sing N N 421 PHE N CA sing N N 422 PHE N H sing N N 423 PHE N H2 sing N N 424 PHE CA C sing N N 425 PHE CA CB sing N N 426 PHE CA HA sing N N 427 PHE C O doub N N 428 PHE C OXT sing N N 429 PHE CB CG sing N N 430 PHE CB HB2 sing N N 431 PHE CB HB3 sing N N 432 PHE CG CD1 doub Y N 433 PHE CG CD2 sing Y N 434 PHE CD1 CE1 sing Y N 435 PHE CD1 HD1 sing N N 436 PHE CD2 CE2 doub Y N 437 PHE CD2 HD2 sing N N 438 PHE CE1 CZ doub Y N 439 PHE CE1 HE1 sing N N 440 PHE CE2 CZ sing Y N 441 PHE CE2 HE2 sing N N 442 PHE CZ HZ sing N N 443 PHE OXT HXT sing N N 444 PPV O11 P1 sing N N 445 PPV O11 H11 sing N N 446 PPV P1 O21 sing N N 447 PPV P1 O31 doub N N 448 PPV P1 OPP sing N N 449 PPV O21 H21 sing N N 450 PPV OPP P2 sing N N 451 PPV P2 O12 sing N N 452 PPV P2 O22 doub N N 453 PPV P2 O32 sing N N 454 PPV O12 H12 sing N N 455 PPV O32 H32 sing N N 456 PRO N CA sing N N 457 PRO N CD sing N N 458 PRO N H sing N N 459 PRO CA C sing N N 460 PRO CA CB sing N N 461 PRO CA HA sing N N 462 PRO C O doub N N 463 PRO C OXT sing N N 464 PRO CB CG sing N N 465 PRO CB HB2 sing N N 466 PRO CB HB3 sing N N 467 PRO CG CD sing N N 468 PRO CG HG2 sing N N 469 PRO CG HG3 sing N N 470 PRO CD HD2 sing N N 471 PRO CD HD3 sing N N 472 PRO OXT HXT sing N N 473 SER N CA sing N N 474 SER N H sing N N 475 SER N H2 sing N N 476 SER CA C sing N N 477 SER CA CB sing N N 478 SER CA HA sing N N 479 SER C O doub N N 480 SER C OXT sing N N 481 SER CB OG sing N N 482 SER CB HB2 sing N N 483 SER CB HB3 sing N N 484 SER OG HG sing N N 485 SER OXT HXT sing N N 486 THR N CA sing N N 487 THR N H sing N N 488 THR N H2 sing N N 489 THR CA C sing N N 490 THR CA CB sing N N 491 THR CA HA sing N N 492 THR C O doub N N 493 THR C OXT sing N N 494 THR CB OG1 sing N N 495 THR CB CG2 sing N N 496 THR CB HB sing N N 497 THR OG1 HG1 sing N N 498 THR CG2 HG21 sing N N 499 THR CG2 HG22 sing N N 500 THR CG2 HG23 sing N N 501 THR OXT HXT sing N N 502 TRP N CA sing N N 503 TRP N H sing N N 504 TRP N H2 sing N N 505 TRP CA C sing N N 506 TRP CA CB sing N N 507 TRP CA HA sing N N 508 TRP C O doub N N 509 TRP C OXT sing N N 510 TRP CB CG sing N N 511 TRP CB HB2 sing N N 512 TRP CB HB3 sing N N 513 TRP CG CD1 doub Y N 514 TRP CG CD2 sing Y N 515 TRP CD1 NE1 sing Y N 516 TRP CD1 HD1 sing N N 517 TRP CD2 CE2 doub Y N 518 TRP CD2 CE3 sing Y N 519 TRP NE1 CE2 sing Y N 520 TRP NE1 HE1 sing N N 521 TRP CE2 CZ2 sing Y N 522 TRP CE3 CZ3 doub Y N 523 TRP CE3 HE3 sing N N 524 TRP CZ2 CH2 doub Y N 525 TRP CZ2 HZ2 sing N N 526 TRP CZ3 CH2 sing Y N 527 TRP CZ3 HZ3 sing N N 528 TRP CH2 HH2 sing N N 529 TRP OXT HXT sing N N 530 TYR N CA sing N N 531 TYR N H sing N N 532 TYR N H2 sing N N 533 TYR CA C sing N N 534 TYR CA CB sing N N 535 TYR CA HA sing N N 536 TYR C O doub N N 537 TYR C OXT sing N N 538 TYR CB CG sing N N 539 TYR CB HB2 sing N N 540 TYR CB HB3 sing N N 541 TYR CG CD1 doub Y N 542 TYR CG CD2 sing Y N 543 TYR CD1 CE1 sing Y N 544 TYR CD1 HD1 sing N N 545 TYR CD2 CE2 doub Y N 546 TYR CD2 HD2 sing N N 547 TYR CE1 CZ doub Y N 548 TYR CE1 HE1 sing N N 549 TYR CE2 CZ sing Y N 550 TYR CE2 HE2 sing N N 551 TYR CZ OH sing N N 552 TYR OH HH sing N N 553 TYR OXT HXT sing N N 554 VAL N CA sing N N 555 VAL N H sing N N 556 VAL N H2 sing N N 557 VAL CA C sing N N 558 VAL CA CB sing N N 559 VAL CA HA sing N N 560 VAL C O doub N N 561 VAL C OXT sing N N 562 VAL CB CG1 sing N N 563 VAL CB CG2 sing N N 564 VAL CB HB sing N N 565 VAL CG1 HG11 sing N N 566 VAL CG1 HG12 sing N N 567 VAL CG1 HG13 sing N N 568 VAL CG2 HG21 sing N N 569 VAL CG2 HG22 sing N N 570 VAL CG2 HG23 sing N N 571 VAL OXT HXT sing N N 572 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3UQ2 'double helix' 3UQ2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 D DG 4 1_555 -0.332 -0.084 0.289 -13.984 -0.316 -5.535 1 T_DC1:DG4_D T 1 ? D 4 ? 19 1 1 B DG 2 1_555 D DC 3 1_555 -0.167 -0.133 -0.043 3.540 -0.550 1.414 2 T_DG2:DC3_D T 2 ? D 3 ? 19 1 1 B DG 3 1_555 D DC 2 1_555 0.065 -0.159 0.077 10.759 -1.088 -3.067 3 T_DG3:DC2_D T 3 ? D 2 ? 19 1 1 B DC 4 1_555 D DG 1 1_555 0.467 -0.142 -0.202 17.626 -9.171 -2.576 4 T_DC4:DG1_D T 4 ? D 1 ? 19 1 1 B DT 5 1_555 C DA 7 1_555 -0.223 -0.129 0.494 -7.738 6.242 0.194 5 T_DT5:DA7_P T 5 ? P 7 ? 20 1 1 B DG 6 1_555 C C 6 1_555 -0.294 -0.072 0.196 9.014 -6.230 -1.266 6 T_DG6:C6_P T 6 ? P 6 ? 19 1 1 B DT 7 1_555 C DA 5 1_555 0.045 -0.256 -0.084 1.966 -13.088 1.215 7 T_DT7:DA5_P T 7 ? P 5 ? 20 1 1 B DA 8 1_555 C DT 4 1_555 0.134 -0.122 -0.326 -1.872 -5.725 1.441 8 T_DA8:DT4_P T 8 ? P 4 ? 20 1 1 B DC 9 1_555 C DG 3 1_555 0.216 -0.293 0.090 3.724 -10.859 -3.006 9 T_DC9:DG3_P T 9 ? P 3 ? 19 1 1 B DT 10 1_555 C DA 2 1_555 -0.368 -0.240 -0.117 5.076 -7.325 -3.871 10 T_DT10:DA2_P T 10 ? P 2 ? 20 1 1 B DG 11 1_555 C DC 1 1_555 -0.189 -0.204 0.359 16.534 -18.849 1.313 11 T_DG11:DC1_P T 11 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 D DG 4 1_555 B DG 2 1_555 D DC 3 1_555 1.291 0.344 3.071 4.282 1.384 30.273 0.386 -1.626 3.231 2.631 -8.143 30.598 1 TT_DC1DG2:DC3DG4_DD T 1 ? D 4 ? T 2 ? D 3 ? 1 B DG 2 1_555 D DC 3 1_555 B DG 3 1_555 D DC 2 1_555 -1.086 0.176 3.192 -4.211 0.547 38.100 0.200 1.130 3.291 0.835 6.427 38.327 2 TT_DG2DG3:DC2DC3_DD T 2 ? D 3 ? T 3 ? D 2 ? 1 B DG 3 1_555 D DC 2 1_555 B DC 4 1_555 D DG 1 1_555 0.475 -0.822 3.264 -0.789 6.728 33.101 -2.475 -0.941 3.031 11.657 1.368 33.768 3 TT_DG3DC4:DG1DC2_DD T 3 ? D 2 ? T 4 ? D 1 ? 1 B DT 5 1_555 C DA 7 1_555 B DG 6 1_555 C C 6 1_555 0.137 -0.144 2.913 0.132 11.850 24.631 -2.914 -0.260 2.573 25.946 -0.289 27.294 4 TT_DT5DG6:C6DA7_PP T 5 ? P 7 ? T 6 ? P 6 ? 1 B DG 6 1_555 C C 6 1_555 B DT 7 1_555 C DA 5 1_555 0.828 -0.554 3.543 2.249 1.980 35.408 -1.222 -1.000 3.552 3.248 -3.689 35.531 5 TT_DG6DT7:DA5C6_PP T 6 ? P 6 ? T 7 ? P 5 ? 1 B DT 7 1_555 C DA 5 1_555 B DA 8 1_555 C DT 4 1_555 -0.306 -0.644 3.417 3.148 9.366 35.669 -2.300 0.915 3.118 14.940 -5.021 36.969 6 TT_DT7DA8:DT4DA5_PP T 7 ? P 5 ? T 8 ? P 4 ? 1 B DA 8 1_555 C DT 4 1_555 B DC 9 1_555 C DG 3 1_555 -0.701 -0.444 3.156 -3.752 2.763 30.208 -1.376 0.607 3.165 5.261 7.145 30.557 7 TT_DA8DC9:DG3DT4_PP T 8 ? P 4 ? T 9 ? P 3 ? 1 B DC 9 1_555 C DG 3 1_555 B DT 10 1_555 C DA 2 1_555 -0.474 -0.584 3.310 2.665 3.676 28.740 -1.964 1.524 3.156 7.348 -5.327 29.089 8 TT_DC9DT10:DA2DG3_PP T 9 ? P 3 ? T 10 ? P 2 ? 1 B DT 10 1_555 C DA 2 1_555 B DG 11 1_555 C DC 1 1_555 0.590 0.774 3.132 -3.125 12.598 35.181 -0.437 -1.328 3.154 20.021 4.966 37.428 9 TT_DT10DG11:DC1DA2_PP T 10 ? P 2 ? T 11 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 PYROPHOSPHATE PPV 6 'MAGNESIUM ION' MG 7 'SODIUM ION' NA 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3MGI _pdbx_initial_refinement_model.details ? #