data_3US4 # _entry.id 3US4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3US4 pdb_00003us4 10.2210/pdb3us4/pdb RCSB RCSB069140 ? ? WWPDB D_1000069140 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 423006 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3US4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a SH2 domain of a megakaryocyte-associated tyrosine kinase (MATK) from Homo sapiens at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 3US4 _cell.length_a 63.840 _cell.length_b 57.560 _cell.length_c 28.750 _cell.angle_alpha 90.000 _cell.angle_beta 116.200 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3US4 _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Megakaryocyte-associated tyrosine-protein kinase' 11395.719 1 2.7.10.2 ? 'SH2 domain residues 117-213' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hematopoietic consensus tyrosine-lacking kinase, Protein kinase HYL, Tyrosine-protein kinase CTK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GLSL(MSE)PWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNL (MSE)D(MSE)VEHYSKDKGAICTKLVRPKRK ; _entity_poly.pdbx_seq_one_letter_code_can ;GLSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEH YSKDKGAICTKLVRPKRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 423006 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 SER n 1 4 LEU n 1 5 MSE n 1 6 PRO n 1 7 TRP n 1 8 PHE n 1 9 HIS n 1 10 GLY n 1 11 LYS n 1 12 ILE n 1 13 SER n 1 14 GLY n 1 15 GLN n 1 16 GLU n 1 17 ALA n 1 18 VAL n 1 19 GLN n 1 20 GLN n 1 21 LEU n 1 22 GLN n 1 23 PRO n 1 24 PRO n 1 25 GLU n 1 26 ASP n 1 27 GLY n 1 28 LEU n 1 29 PHE n 1 30 LEU n 1 31 VAL n 1 32 ARG n 1 33 GLU n 1 34 SER n 1 35 ALA n 1 36 ARG n 1 37 HIS n 1 38 PRO n 1 39 GLY n 1 40 ASP n 1 41 TYR n 1 42 VAL n 1 43 LEU n 1 44 CYS n 1 45 VAL n 1 46 SER n 1 47 PHE n 1 48 GLY n 1 49 ARG n 1 50 ASP n 1 51 VAL n 1 52 ILE n 1 53 HIS n 1 54 TYR n 1 55 ARG n 1 56 VAL n 1 57 LEU n 1 58 HIS n 1 59 ARG n 1 60 ASP n 1 61 GLY n 1 62 HIS n 1 63 LEU n 1 64 THR n 1 65 ILE n 1 66 ASP n 1 67 GLU n 1 68 ALA n 1 69 VAL n 1 70 PHE n 1 71 PHE n 1 72 CYS n 1 73 ASN n 1 74 LEU n 1 75 MSE n 1 76 ASP n 1 77 MSE n 1 78 VAL n 1 79 GLU n 1 80 HIS n 1 81 TYR n 1 82 SER n 1 83 LYS n 1 84 ASP n 1 85 LYS n 1 86 GLY n 1 87 ALA n 1 88 ILE n 1 89 CYS n 1 90 THR n 1 91 LYS n 1 92 LEU n 1 93 VAL n 1 94 ARG n 1 95 PRO n 1 96 LYS n 1 97 ARG n 1 98 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTK, HYL, MATK, NM_139355' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MATK_HUMAN _struct_ref.pdbx_db_accession P42679 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHY SKDKGAICTKLVRPKRK ; _struct_ref.pdbx_align_begin 117 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3US4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 98 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P42679 _struct_ref_seq.db_align_beg 117 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 213 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 117 _struct_ref_seq.pdbx_auth_seq_align_end 213 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3US4 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P42679 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3US4 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.40M (NH4)2SO4, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' _diffrn_detector.pdbx_collection_date 2011-10-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9999 1.0 2 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list 0.9999,0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 3US4 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 25.593 _reflns.number_obs 14591 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 16.870 _reflns.percent_possible_obs 96.900 _reflns.B_iso_Wilson_estimate 23.592 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 5.02 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.540 4927 ? 1036 0.481 3.290 ? ? 4.76 ? ? 93.600 1 1 1.540 1.580 5226 ? 1049 0.346 4.9 ? ? ? ? ? 97.800 2 1 1.580 1.630 5003 ? 996 0.263 6.1 ? ? ? ? ? 96.800 3 1 1.630 1.680 4979 ? 1002 0.212 7.4 ? ? ? ? ? 96.200 4 1 1.680 1.730 4963 ? 991 0.154 9.3 ? ? ? ? ? 97.300 5 1 1.730 1.790 4526 ? 923 0.106 12.3 ? ? ? ? ? 97.500 6 1 1.790 1.860 4431 ? 884 0.092 14.1 ? ? ? ? ? 98.200 7 1 1.860 1.940 4239 ? 872 0.071 16.9 ? ? ? ? ? 97.400 8 1 1.940 2.020 4073 ? 823 0.057 19.5 ? ? ? ? ? 97.900 9 1 2.020 2.120 4359 ? 817 0.057 22.7 ? ? ? ? ? 98.400 10 1 2.120 2.240 4085 ? 757 0.058 24.0 ? ? ? ? ? 97.200 11 1 2.240 2.370 3915 ? 734 0.053 25.1 ? ? ? ? ? 98.300 12 1 2.370 2.540 3563 ? 669 0.050 26.3 ? ? ? ? ? 99.000 13 1 2.540 2.740 3273 ? 629 0.045 27.8 ? ? ? ? ? 99.100 14 1 2.740 3.000 3001 ? 593 0.045 28.2 ? ? ? ? ? 98.200 15 1 3.000 3.360 2753 ? 537 0.043 29.9 ? ? ? ? ? 98.000 16 1 3.360 3.870 2411 ? 472 0.040 30.7 ? ? ? ? ? 98.300 17 1 3.870 4.750 1785 ? 385 0.038 29.2 ? ? ? ? ? 94.400 18 1 4.750 6.710 1281 ? 290 0.041 28.2 ? ? ? ? ? 91.800 19 1 6.710 25.593 481 ? 132 0.036 25.5 ? ? ? ? ? 71.700 20 1 # _refine.entry_id 3US4 _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 25.593 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.3400 _refine.ls_number_reflns_obs 14577 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. HOWEVER, THE SE-MET SIDE-CHAIN IS DISORDERED. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. SULFATE MODELED IS PRESENT IN CRYSTALLIZATION CONDITIONS. 4. MAD RESTRAINTS (HL COEFFICIENTS) WERE USED DURING REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1866 _refine.ls_R_factor_R_work 0.1855 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2081 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0200 _refine.ls_number_reflns_R_free 732 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.7715 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.3587 _refine.aniso_B[2][2] 0.3584 _refine.aniso_B[3][3] -2.7171 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 1.1524 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9632 _refine.correlation_coeff_Fo_to_Fc_free 0.9639 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 103.620 _refine.B_iso_min 13.390 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3US4 _refine_analyze.Luzzati_coordinate_error_obs 0.253 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 774 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 856 _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 25.593 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 415 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 19 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 139 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 864 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 105 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1069 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 864 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1183 0.980 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.890 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.550 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.6200 _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.percent_reflns_obs 97.3400 _refine_ls_shell.number_reflns_R_work 2776 _refine_ls_shell.R_factor_all 0.2032 _refine_ls_shell.R_factor_R_work 0.2019 _refine_ls_shell.R_factor_R_free 0.2252 _refine_ls_shell.percent_reflns_R_free 5.5100 _refine_ls_shell.number_reflns_R_free 162 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2938 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3US4 _struct.title 'Crystal structure of a SH2 domain of a megakaryocyte-associated tyrosine kinase (MATK) from Homo sapiens at 1.50 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;SH2 domain, signaling protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSFERASE, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3US4 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? LEU A 21 ? SER A 128 LEU A 136 1 ? 9 HELX_P HELX_P2 2 ASN A 73 ? ASP A 84 ? ASN A 188 ASP A 199 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 4 C ? ? ? 1_555 A MSE 5 N ? ? A LEU 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A MSE 5 C ? ? ? 1_555 A PRO 6 N ? ? A MSE 120 A PRO 121 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale3 covale both ? A LEU 74 C ? ? ? 1_555 A MSE 75 N ? ? A LEU 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? A MSE 75 C ? ? ? 1_555 A ASP 76 N ? ? A MSE 190 A ASP 191 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale5 covale both ? A ASP 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASP 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale6 covale both ? A MSE 77 C ? ? ? 1_555 A VAL 78 N ? ? A MSE 192 A VAL 193 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 137 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 138 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.19 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 29 ? GLU A 33 ? PHE A 144 GLU A 148 A 2 TYR A 41 ? PHE A 47 ? TYR A 156 PHE A 162 A 3 ASP A 50 ? ARG A 59 ? ASP A 165 ARG A 174 A 4 HIS A 62 ? THR A 64 ? HIS A 177 THR A 179 A 5 PHE A 70 ? PHE A 71 ? PHE A 185 PHE A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 30 ? N LEU A 145 O CYS A 44 ? O CYS A 159 A 2 3 N VAL A 45 ? N VAL A 160 O ILE A 52 ? O ILE A 167 A 3 4 N ARG A 59 ? N ARG A 174 O HIS A 62 ? O HIS A 177 A 4 5 N LEU A 63 ? N LEU A 178 O PHE A 71 ? O PHE A 186 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 508 ? 7 'BINDING SITE FOR RESIDUE SO4 A 508' AC2 Software A SO4 509 ? 5 'BINDING SITE FOR RESIDUE SO4 A 509' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 58 ? HIS A 173 . ? 4_546 ? 2 AC1 7 ASP A 60 ? ASP A 175 . ? 4_546 ? 3 AC1 7 GLY A 61 ? GLY A 176 . ? 4_546 ? 4 AC1 7 ARG A 94 ? ARG A 209 . ? 1_555 ? 5 AC1 7 LYS A 96 ? LYS A 211 . ? 1_555 ? 6 AC1 7 ARG A 97 ? ARG A 212 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 553 . ? 1_555 ? 8 AC2 5 ARG A 32 ? ARG A 147 . ? 1_555 ? 9 AC2 5 SER A 34 ? SER A 149 . ? 1_555 ? 10 AC2 5 ALA A 35 ? ALA A 150 . ? 1_555 ? 11 AC2 5 ARG A 36 ? ARG A 151 . ? 1_555 ? 12 AC2 5 HOH D . ? HOH A 533 . ? 1_555 ? # _atom_sites.entry_id 3US4 _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007708 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017373 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038765 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LEU 2 117 117 LEU LEU A . n A 1 3 SER 3 118 118 SER SER A . n A 1 4 LEU 4 119 119 LEU LEU A . n A 1 5 MSE 5 120 120 MSE MSE A . n A 1 6 PRO 6 121 121 PRO PRO A . n A 1 7 TRP 7 122 122 TRP TRP A . n A 1 8 PHE 8 123 123 PHE PHE A . n A 1 9 HIS 9 124 124 HIS HIS A . n A 1 10 GLY 10 125 125 GLY GLY A . n A 1 11 LYS 11 126 126 LYS LYS A . n A 1 12 ILE 12 127 127 ILE ILE A . n A 1 13 SER 13 128 128 SER SER A . n A 1 14 GLY 14 129 129 GLY GLY A . n A 1 15 GLN 15 130 130 GLN GLN A . n A 1 16 GLU 16 131 131 GLU GLU A . n A 1 17 ALA 17 132 132 ALA ALA A . n A 1 18 VAL 18 133 133 VAL VAL A . n A 1 19 GLN 19 134 134 GLN GLN A . n A 1 20 GLN 20 135 135 GLN GLN A . n A 1 21 LEU 21 136 136 LEU LEU A . n A 1 22 GLN 22 137 137 GLN GLN A . n A 1 23 PRO 23 138 138 PRO PRO A . n A 1 24 PRO 24 139 139 PRO PRO A . n A 1 25 GLU 25 140 140 GLU GLU A . n A 1 26 ASP 26 141 141 ASP ASP A . n A 1 27 GLY 27 142 142 GLY GLY A . n A 1 28 LEU 28 143 143 LEU LEU A . n A 1 29 PHE 29 144 144 PHE PHE A . n A 1 30 LEU 30 145 145 LEU LEU A . n A 1 31 VAL 31 146 146 VAL VAL A . n A 1 32 ARG 32 147 147 ARG ARG A . n A 1 33 GLU 33 148 148 GLU GLU A . n A 1 34 SER 34 149 149 SER SER A . n A 1 35 ALA 35 150 150 ALA ALA A . n A 1 36 ARG 36 151 151 ARG ARG A . n A 1 37 HIS 37 152 152 HIS HIS A . n A 1 38 PRO 38 153 153 PRO PRO A . n A 1 39 GLY 39 154 154 GLY GLY A . n A 1 40 ASP 40 155 155 ASP ASP A . n A 1 41 TYR 41 156 156 TYR TYR A . n A 1 42 VAL 42 157 157 VAL VAL A . n A 1 43 LEU 43 158 158 LEU LEU A . n A 1 44 CYS 44 159 159 CYS CYS A . n A 1 45 VAL 45 160 160 VAL VAL A . n A 1 46 SER 46 161 161 SER SER A . n A 1 47 PHE 47 162 162 PHE PHE A . n A 1 48 GLY 48 163 163 GLY GLY A . n A 1 49 ARG 49 164 164 ARG ARG A . n A 1 50 ASP 50 165 165 ASP ASP A . n A 1 51 VAL 51 166 166 VAL VAL A . n A 1 52 ILE 52 167 167 ILE ILE A . n A 1 53 HIS 53 168 168 HIS HIS A . n A 1 54 TYR 54 169 169 TYR TYR A . n A 1 55 ARG 55 170 170 ARG ARG A . n A 1 56 VAL 56 171 171 VAL VAL A . n A 1 57 LEU 57 172 172 LEU LEU A . n A 1 58 HIS 58 173 173 HIS HIS A . n A 1 59 ARG 59 174 174 ARG ARG A . n A 1 60 ASP 60 175 175 ASP ASP A . n A 1 61 GLY 61 176 176 GLY GLY A . n A 1 62 HIS 62 177 177 HIS HIS A . n A 1 63 LEU 63 178 178 LEU LEU A . n A 1 64 THR 64 179 179 THR THR A . n A 1 65 ILE 65 180 180 ILE ILE A . n A 1 66 ASP 66 181 181 ASP ASP A . n A 1 67 GLU 67 182 182 GLU GLU A . n A 1 68 ALA 68 183 183 ALA ALA A . n A 1 69 VAL 69 184 184 VAL VAL A . n A 1 70 PHE 70 185 185 PHE PHE A . n A 1 71 PHE 71 186 186 PHE PHE A . n A 1 72 CYS 72 187 187 CYS CYS A . n A 1 73 ASN 73 188 188 ASN ASN A . n A 1 74 LEU 74 189 189 LEU LEU A . n A 1 75 MSE 75 190 190 MSE MSE A . n A 1 76 ASP 76 191 191 ASP ASP A . n A 1 77 MSE 77 192 192 MSE MSE A . n A 1 78 VAL 78 193 193 VAL VAL A . n A 1 79 GLU 79 194 194 GLU GLU A . n A 1 80 HIS 80 195 195 HIS HIS A . n A 1 81 TYR 81 196 196 TYR TYR A . n A 1 82 SER 82 197 197 SER SER A . n A 1 83 LYS 83 198 198 LYS LYS A . n A 1 84 ASP 84 199 199 ASP ASP A . n A 1 85 LYS 85 200 200 LYS LYS A . n A 1 86 GLY 86 201 201 GLY GLY A . n A 1 87 ALA 87 202 202 ALA ALA A . n A 1 88 ILE 88 203 203 ILE ILE A . n A 1 89 CYS 89 204 204 CYS CYS A . n A 1 90 THR 90 205 205 THR THR A . n A 1 91 LYS 91 206 206 LYS LYS A . n A 1 92 LEU 92 207 207 LEU LEU A . n A 1 93 VAL 93 208 208 VAL VAL A . n A 1 94 ARG 94 209 209 ARG ARG A . n A 1 95 PRO 95 210 210 PRO PRO A . n A 1 96 LYS 96 211 211 LYS LYS A . n A 1 97 ARG 97 212 212 ARG ARG A . n A 1 98 LYS 98 213 213 LYS LYS A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 508 508 SO4 SO4 A . C 2 SO4 1 509 509 SO4 SO4 A . D 3 HOH 1 510 510 HOH HOH A . D 3 HOH 2 511 511 HOH HOH A . D 3 HOH 3 512 512 HOH HOH A . D 3 HOH 4 513 513 HOH HOH A . D 3 HOH 5 514 514 HOH HOH A . D 3 HOH 6 515 515 HOH HOH A . D 3 HOH 7 516 516 HOH HOH A . D 3 HOH 8 517 517 HOH HOH A . D 3 HOH 9 518 518 HOH HOH A . D 3 HOH 10 519 519 HOH HOH A . D 3 HOH 11 520 520 HOH HOH A . D 3 HOH 12 521 521 HOH HOH A . D 3 HOH 13 522 522 HOH HOH A . D 3 HOH 14 523 523 HOH HOH A . D 3 HOH 15 524 524 HOH HOH A . D 3 HOH 16 525 525 HOH HOH A . D 3 HOH 17 526 526 HOH HOH A . D 3 HOH 18 527 527 HOH HOH A . D 3 HOH 19 528 528 HOH HOH A . D 3 HOH 20 529 529 HOH HOH A . D 3 HOH 21 530 530 HOH HOH A . D 3 HOH 22 531 531 HOH HOH A . D 3 HOH 23 532 532 HOH HOH A . D 3 HOH 24 533 533 HOH HOH A . D 3 HOH 25 534 534 HOH HOH A . D 3 HOH 26 535 535 HOH HOH A . D 3 HOH 27 536 536 HOH HOH A . D 3 HOH 28 537 537 HOH HOH A . D 3 HOH 29 538 538 HOH HOH A . D 3 HOH 30 539 539 HOH HOH A . D 3 HOH 31 540 540 HOH HOH A . D 3 HOH 32 541 541 HOH HOH A . D 3 HOH 33 542 542 HOH HOH A . D 3 HOH 34 543 543 HOH HOH A . D 3 HOH 35 544 544 HOH HOH A . D 3 HOH 36 545 545 HOH HOH A . D 3 HOH 37 546 546 HOH HOH A . D 3 HOH 38 547 547 HOH HOH A . D 3 HOH 39 548 548 HOH HOH A . D 3 HOH 40 549 549 HOH HOH A . D 3 HOH 41 550 550 HOH HOH A . D 3 HOH 42 551 551 HOH HOH A . D 3 HOH 43 552 552 HOH HOH A . D 3 HOH 44 553 553 HOH HOH A . D 3 HOH 45 554 554 HOH HOH A . D 3 HOH 46 555 555 HOH HOH A . D 3 HOH 47 556 556 HOH HOH A . D 3 HOH 48 557 557 HOH HOH A . D 3 HOH 49 558 558 HOH HOH A . D 3 HOH 50 559 559 HOH HOH A . D 3 HOH 51 560 560 HOH HOH A . D 3 HOH 52 561 561 HOH HOH A . D 3 HOH 53 562 562 HOH HOH A . D 3 HOH 54 563 563 HOH HOH A . D 3 HOH 55 564 564 HOH HOH A . D 3 HOH 56 565 565 HOH HOH A . D 3 HOH 57 566 566 HOH HOH A . D 3 HOH 58 567 567 HOH HOH A . D 3 HOH 59 568 568 HOH HOH A . D 3 HOH 60 569 569 HOH HOH A . D 3 HOH 61 570 570 HOH HOH A . D 3 HOH 62 571 571 HOH HOH A . D 3 HOH 63 572 572 HOH HOH A . D 3 HOH 64 573 573 HOH HOH A . D 3 HOH 65 574 574 HOH HOH A . D 3 HOH 66 575 575 HOH HOH A . D 3 HOH 67 576 576 HOH HOH A . D 3 HOH 68 577 577 HOH HOH A . D 3 HOH 69 578 578 HOH HOH A . D 3 HOH 70 579 579 HOH HOH A . D 3 HOH 71 580 580 HOH HOH A . D 3 HOH 72 581 581 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 120 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 190 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 192 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1790 ? 2 MORE -62 ? 2 'SSA (A^2)' 10120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 566 ? D HOH . 2 1 A HOH 576 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-28 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.3201 _pdbx_refine_tls.origin_y 37.4890 _pdbx_refine_tls.origin_z 9.0441 _pdbx_refine_tls.T[1][1] -0.0833 _pdbx_refine_tls.T[2][2] -0.1060 _pdbx_refine_tls.T[3][3] -0.1116 _pdbx_refine_tls.T[1][2] -0.0239 _pdbx_refine_tls.T[1][3] 0.0154 _pdbx_refine_tls.T[2][3] -0.0143 _pdbx_refine_tls.L[1][1] 8.8869 _pdbx_refine_tls.L[2][2] 3.1110 _pdbx_refine_tls.L[3][3] 4.5473 _pdbx_refine_tls.L[1][2] -0.1560 _pdbx_refine_tls.L[1][3] 2.8435 _pdbx_refine_tls.L[2][3] 1.0697 _pdbx_refine_tls.S[1][1] 0.1538 _pdbx_refine_tls.S[2][2] 0.0077 _pdbx_refine_tls.S[3][3] -0.1615 _pdbx_refine_tls.S[1][2] 0.0311 _pdbx_refine_tls.S[1][3] -0.3550 _pdbx_refine_tls.S[2][3] -0.2096 _pdbx_refine_tls.S[2][1] -0.0246 _pdbx_refine_tls.S[3][1] 0.1212 _pdbx_refine_tls.S[3][2] -0.1994 # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3US4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 117-213) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. RESIDUE NUMBERING IS BASED ON UNIPROTKB ID P42679. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 208 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -119.48 _pdbx_validate_torsion.psi -94.44 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 126 ? CD ? A LYS 11 CD 2 1 Y 1 A LYS 126 ? CE ? A LYS 11 CE 3 1 Y 1 A LYS 126 ? NZ ? A LYS 11 NZ 4 1 Y 1 A GLU 194 ? CD ? A GLU 79 CD 5 1 Y 1 A GLU 194 ? OE1 ? A GLU 79 OE1 6 1 Y 1 A GLU 194 ? OE2 ? A GLU 79 OE2 7 1 Y 1 A ARG 212 ? CG ? A ARG 97 CG 8 1 Y 1 A ARG 212 ? CD ? A ARG 97 CD 9 1 Y 1 A ARG 212 ? NE ? A ARG 97 NE 10 1 Y 1 A ARG 212 ? CZ ? A ARG 97 CZ 11 1 Y 1 A ARG 212 ? NH1 ? A ARG 97 NH1 12 1 Y 1 A ARG 212 ? NH2 ? A ARG 97 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #