data_3V2L # _entry.id 3V2L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3V2L RCSB RCSB069515 WWPDB D_1000069515 # _pdbx_database_status.entry_id 3V2L _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ziemba, B.P.' 1 'Jones, D.N.' 2 # _citation.id primary _citation.title 'A novel mechanism of ligand binding and release in the odorant binding protein 20 from the malaria mosquito Anopheles gambiae.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 22 _citation.page_first 11 _citation.page_last 21 _citation.year 2013 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23081820 _citation.pdbx_database_id_DOI 10.1002/pro.2179 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ziemba, B.P.' 1 primary 'Murphy, E.J.' 2 primary 'Edlin, H.T.' 3 primary 'Jones, D.N.' 4 # _cell.length_a 34.577 _cell.length_b 38.229 _cell.length_c 89.912 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3V2L _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3V2L _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man AGAP005208-PA 13450.953 1 ? ? ? ? 2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 3 water nat water 18.015 100 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTVEQMMKSGEMIRSVCLGKTKVAEELVNGLRESKFADVKELKCYVNCVMEMMQTMKKGKLNYDASVKQIDTIMPDELAG PMRAALDICRTVADGIKNNCDAAYVLLQCLSKNNPKFIFP ; _entity_poly.pdbx_seq_one_letter_code_can ;MTVEQMMKSGEMIRSVCLGKTKVAEELVNGLRESKFADVKELKCYVNCVMEMMQTMKKGKLNYDASVKQIDTIMPDELAG PMRAALDICRTVADGIKNNCDAAYVLLQCLSKNNPKFIFP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 VAL n 1 4 GLU n 1 5 GLN n 1 6 MET n 1 7 MET n 1 8 LYS n 1 9 SER n 1 10 GLY n 1 11 GLU n 1 12 MET n 1 13 ILE n 1 14 ARG n 1 15 SER n 1 16 VAL n 1 17 CYS n 1 18 LEU n 1 19 GLY n 1 20 LYS n 1 21 THR n 1 22 LYS n 1 23 VAL n 1 24 ALA n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 VAL n 1 29 ASN n 1 30 GLY n 1 31 LEU n 1 32 ARG n 1 33 GLU n 1 34 SER n 1 35 LYS n 1 36 PHE n 1 37 ALA n 1 38 ASP n 1 39 VAL n 1 40 LYS n 1 41 GLU n 1 42 LEU n 1 43 LYS n 1 44 CYS n 1 45 TYR n 1 46 VAL n 1 47 ASN n 1 48 CYS n 1 49 VAL n 1 50 MET n 1 51 GLU n 1 52 MET n 1 53 MET n 1 54 GLN n 1 55 THR n 1 56 MET n 1 57 LYS n 1 58 LYS n 1 59 GLY n 1 60 LYS n 1 61 LEU n 1 62 ASN n 1 63 TYR n 1 64 ASP n 1 65 ALA n 1 66 SER n 1 67 VAL n 1 68 LYS n 1 69 GLN n 1 70 ILE n 1 71 ASP n 1 72 THR n 1 73 ILE n 1 74 MET n 1 75 PRO n 1 76 ASP n 1 77 GLU n 1 78 LEU n 1 79 ALA n 1 80 GLY n 1 81 PRO n 1 82 MET n 1 83 ARG n 1 84 ALA n 1 85 ALA n 1 86 LEU n 1 87 ASP n 1 88 ILE n 1 89 CYS n 1 90 ARG n 1 91 THR n 1 92 VAL n 1 93 ALA n 1 94 ASP n 1 95 GLY n 1 96 ILE n 1 97 LYS n 1 98 ASN n 1 99 ASN n 1 100 CYS n 1 101 ASP n 1 102 ALA n 1 103 ALA n 1 104 TYR n 1 105 VAL n 1 106 LEU n 1 107 LEU n 1 108 GLN n 1 109 CYS n 1 110 LEU n 1 111 SER n 1 112 LYS n 1 113 ASN n 1 114 ASN n 1 115 PRO n 1 116 LYS n 1 117 PHE n 1 118 ILE n 1 119 PHE n 1 120 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'African malaria mosquito' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AgaP_AGAP005208, OBP20' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details Antenna _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Anopheles gambiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7165 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET13a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7Q9J3_ANOGA _struct_ref.pdbx_db_accession Q7Q9J3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TVEQMMKSGEMIRSVCLGKTKVAEELVNGLRESKFADVKELKCYVNCVMEMMQTMKKGKLNYDASVKQIDTIMPDELAGP MRAALDICRTVADGIKNNCDAAYVLLQCLSKNNPKFIFP ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3V2L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7Q9J3 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 120 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3V2L _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q7Q9J3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3V2L _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 276 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '29% PEG 3350, 0.1M sodium citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 276K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2010-01-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 # _reflns.entry_id 3V2L _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 38.230 _reflns.number_obs 11263 _reflns.pdbx_scaling_rejects 505 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_netI_over_sigmaI 7.700 _reflns.pdbx_chi_squared 0.980 _reflns.pdbx_redundancy 4.130 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 16173 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.600 1.660 ? 6679 ? 0.429 2.500 ? 0.960 4.170 ? 1598 100.000 1 1 1.660 1.720 ? 6689 ? 0.367 2.900 ? 0.990 4.150 ? 1607 100.000 2 1 1.720 1.800 ? 6690 ? 0.313 3.200 ? 0.970 4.170 ? 1601 100.000 3 1 1.800 1.900 ? 6779 ? 0.265 3.800 ? 1.010 4.180 ? 1620 100.000 4 1 1.900 2.020 ? 6635 ? 0.223 4.900 ? 1.110 4.070 ? 1619 99.900 5 1 2.020 2.170 ? 6565 ? 0.152 7.000 ? 1.020 4.030 ? 1607 99.400 6 1 2.170 2.390 ? 6769 ? 0.145 7.400 ? 0.910 4.150 ? 1616 98.800 7 1 2.390 2.740 ? 6841 ? 0.100 11.900 ? 0.940 4.180 ? 1621 98.400 8 1 2.740 3.450 ? 6914 ? 0.085 14.900 ? 0.880 4.220 ? 1625 97.200 9 1 3.450 38.230 ? 6772 ? 0.077 18.200 ? 1.060 4.000 ? 1659 94.400 10 1 # _refine.entry_id 3V2L _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 34.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.1100 _refine.ls_number_reflns_obs 11263 _refine.ls_number_reflns_all 16173 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1991 _refine.ls_R_factor_R_work 0.1942 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2423 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_number_reflns_R_free 1123 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.2965 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.6400 _refine.aniso_B[2][2] 3.4000 _refine.aniso_B[3][3] -1.7600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1550 _refine.pdbx_overall_ESU_R_Free 0.1470 _refine.overall_SU_ML 0.1050 _refine.overall_SU_B 7.5070 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 71.580 _refine.B_iso_min 20.380 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 916 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 1029 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 34.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 974 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1309 1.218 2.002 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 127 4.717 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36 39.033 26.111 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 195 13.287 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 20.590 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 149 0.084 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 697 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 622 0.612 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1006 1.064 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 352 1.902 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 303 3.174 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.2800 _refine_ls_shell.number_reflns_R_work 741 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2220 _refine_ls_shell.R_factor_R_free 0.3130 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 90 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 831 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3V2L _struct.title 'Structure of Anopheles gambiae odorant binding protein 20 bound to polyethylene glycol' _struct.pdbx_descriptor AGAP005208-PA _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3V2L _struct_keywords.pdbx_keywords 'ODORANT-BINDING PROTEIN' _struct_keywords.text 'odorant binding olfaction, General odorant Binding Protein, Transport, secreted, ODORANT-BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 2 ? LYS A 22 ? THR A 2 LYS A 22 1 ? 21 HELX_P HELX_P2 2 ALA A 24 ? LEU A 31 ? ALA A 24 LEU A 31 1 ? 8 HELX_P HELX_P3 3 VAL A 39 ? MET A 53 ? VAL A 39 MET A 53 1 ? 15 HELX_P HELX_P4 4 ASN A 62 ? MET A 74 ? ASN A 62 MET A 74 1 ? 13 HELX_P HELX_P5 5 PRO A 75 ? CYS A 89 ? PRO A 75 CYS A 89 1 ? 15 HELX_P HELX_P6 6 ASN A 98 ? ASN A 113 ? ASN A 98 ASN A 113 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 17 A CYS 48 1_555 ? ? ? ? ? ? ? 2.057 ? disulf2 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 44 A CYS 100 1_555 ? ? ? ? ? ? ? 2.076 ? disulf3 disulf ? ? A CYS 89 SG ? ? ? 1_555 A CYS 109 SG ? ? A CYS 89 A CYS 109 1_555 ? ? ? ? ? ? ? 2.063 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 56 ? LYS A 57 ? MET A 56 LYS A 57 A 2 LYS A 60 ? LEU A 61 ? LYS A 60 LEU A 61 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 57 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 57 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 60 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 60 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE PG4 A 121' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 MET A 6 ? MET A 6 . ? 1_555 ? 2 AC1 6 MET A 7 ? MET A 7 . ? 1_555 ? 3 AC1 6 GLY A 10 ? GLY A 10 . ? 1_555 ? 4 AC1 6 ARG A 32 ? ARG A 32 . ? 1_555 ? 5 AC1 6 MET A 53 ? MET A 53 . ? 1_555 ? 6 AC1 6 ILE A 118 ? ILE A 118 . ? 1_555 ? # _atom_sites.entry_id 3V2L _atom_sites.fract_transf_matrix[1][1] 0.028921 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026158 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011122 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 PRO 120 120 120 PRO PRO A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2012-12-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -6.4346 3.3984 -21.1669 0.1951 0.2854 0.1287 -0.0524 -0.0274 -0.0536 0.3503 3.5404 3.8298 -0.8291 -0.6449 -0.3236 -0.0405 -0.0423 0.0828 0.1271 0.0098 -0.1194 -0.1709 0.0276 -0.3575 'X-RAY DIFFRACTION' 2 ? refined -10.5960 6.0037 -10.8481 0.0540 0.0763 0.0212 0.0154 -0.0287 -0.0269 5.1965 5.8840 4.3289 -2.1222 -0.5398 1.9031 -0.0536 -0.0747 0.1283 0.3790 -0.0639 0.0405 0.0289 -0.0887 -0.0932 'X-RAY DIFFRACTION' 3 ? refined 0.1712 -3.1741 -7.3621 0.3013 0.3415 0.2837 0.1861 -0.0240 -0.0394 8.5785 0.7355 18.0982 0.9033 -3.0010 2.4945 -0.1457 -0.1268 0.2725 0.6269 -0.3727 0.0307 -0.1555 0.2752 0.3783 'X-RAY DIFFRACTION' 4 ? refined 9.3704 3.1258 -12.0121 0.0900 0.1005 0.0973 0.0429 -0.0208 -0.0533 4.1539 4.2634 5.3186 2.2948 -1.6060 -2.5866 0.0232 0.0726 -0.0959 0.4786 -0.2923 0.1813 -0.2365 0.2302 0.1433 'X-RAY DIFFRACTION' 5 ? refined 0.3494 8.7996 -6.1455 0.0563 0.0161 0.0279 0.0176 -0.0106 -0.0088 4.6158 1.1970 1.1737 1.0966 -0.8254 0.0406 0.0042 -0.0215 0.0173 0.1619 -0.0079 -0.0101 -0.0064 0.0359 -0.0265 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 31 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 32 A 50 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 51 A 60 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 61 A 76 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 77 A 120 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 d*TREK 9.9.7LDz 'Mar 18 2009' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data scaling' http://www.rigaku.com/software/dtrek.html ? ? 2 d*TREK 9.9.7LDz 'Mar 18 2009' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data reduction' http://www.rigaku.com/software/dtrek.html ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 Blu-Ice . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 1 CG 2 1 Y 1 A MET 1 ? SD ? A MET 1 SD 3 1 Y 1 A MET 1 ? CE ? A MET 1 CE 4 1 Y 1 A LYS 57 ? CG ? A LYS 57 CG 5 1 Y 1 A LYS 57 ? CD ? A LYS 57 CD 6 1 Y 1 A LYS 57 ? CE ? A LYS 57 CE 7 1 Y 1 A LYS 57 ? NZ ? A LYS 57 NZ 8 1 Y 1 A LYS 58 ? CG ? A LYS 58 CG 9 1 Y 1 A LYS 58 ? CD ? A LYS 58 CD 10 1 Y 1 A LYS 58 ? CE ? A LYS 58 CE 11 1 Y 1 A LYS 58 ? NZ ? A LYS 58 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TETRAETHYLENE GLYCOL' PG4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 1 121 1 PG4 PG4 A . C 3 HOH 1 122 122 HOH HOH A . C 3 HOH 2 123 123 HOH HOH A . C 3 HOH 3 124 124 HOH HOH A . C 3 HOH 4 125 1 HOH HOH A . C 3 HOH 5 126 2 HOH HOH A . C 3 HOH 6 127 127 HOH HOH A . C 3 HOH 7 128 128 HOH HOH A . C 3 HOH 8 129 3 HOH HOH A . C 3 HOH 9 130 130 HOH HOH A . C 3 HOH 10 131 131 HOH HOH A . C 3 HOH 11 132 132 HOH HOH A . C 3 HOH 12 133 133 HOH HOH A . C 3 HOH 13 134 134 HOH HOH A . C 3 HOH 14 135 4 HOH HOH A . C 3 HOH 15 136 5 HOH HOH A . C 3 HOH 16 137 6 HOH HOH A . C 3 HOH 17 138 7 HOH HOH A . C 3 HOH 18 139 8 HOH HOH A . C 3 HOH 19 140 9 HOH HOH A . C 3 HOH 20 141 10 HOH HOH A . C 3 HOH 21 142 11 HOH HOH A . C 3 HOH 22 143 12 HOH HOH A . C 3 HOH 23 144 13 HOH HOH A . C 3 HOH 24 145 14 HOH HOH A . C 3 HOH 25 146 16 HOH HOH A . C 3 HOH 26 147 17 HOH HOH A . C 3 HOH 27 148 18 HOH HOH A . C 3 HOH 28 149 19 HOH HOH A . C 3 HOH 29 150 20 HOH HOH A . C 3 HOH 30 151 21 HOH HOH A . C 3 HOH 31 152 22 HOH HOH A . C 3 HOH 32 153 23 HOH HOH A . C 3 HOH 33 154 24 HOH HOH A . C 3 HOH 34 155 25 HOH HOH A . C 3 HOH 35 156 26 HOH HOH A . C 3 HOH 36 157 27 HOH HOH A . C 3 HOH 37 158 28 HOH HOH A . C 3 HOH 38 159 29 HOH HOH A . C 3 HOH 39 160 30 HOH HOH A . C 3 HOH 40 161 31 HOH HOH A . C 3 HOH 41 162 32 HOH HOH A . C 3 HOH 42 163 33 HOH HOH A . C 3 HOH 43 164 35 HOH HOH A . C 3 HOH 44 165 37 HOH HOH A . C 3 HOH 45 166 38 HOH HOH A . C 3 HOH 46 167 39 HOH HOH A . C 3 HOH 47 168 41 HOH HOH A . C 3 HOH 48 169 42 HOH HOH A . C 3 HOH 49 170 44 HOH HOH A . C 3 HOH 50 171 45 HOH HOH A . C 3 HOH 51 172 46 HOH HOH A . C 3 HOH 52 173 47 HOH HOH A . C 3 HOH 53 174 48 HOH HOH A . C 3 HOH 54 175 50 HOH HOH A . C 3 HOH 55 176 51 HOH HOH A . C 3 HOH 56 177 52 HOH HOH A . C 3 HOH 57 178 53 HOH HOH A . C 3 HOH 58 179 54 HOH HOH A . C 3 HOH 59 180 56 HOH HOH A . C 3 HOH 60 181 57 HOH HOH A . C 3 HOH 61 182 58 HOH HOH A . C 3 HOH 62 183 59 HOH HOH A . C 3 HOH 63 184 60 HOH HOH A . C 3 HOH 64 185 61 HOH HOH A . C 3 HOH 65 186 63 HOH HOH A . C 3 HOH 66 187 64 HOH HOH A . C 3 HOH 67 188 66 HOH HOH A . C 3 HOH 68 189 67 HOH HOH A . C 3 HOH 69 190 68 HOH HOH A . C 3 HOH 70 191 69 HOH HOH A . C 3 HOH 71 192 70 HOH HOH A . C 3 HOH 72 193 71 HOH HOH A . C 3 HOH 73 194 73 HOH HOH A . C 3 HOH 74 195 74 HOH HOH A . C 3 HOH 75 196 75 HOH HOH A . C 3 HOH 76 197 76 HOH HOH A . C 3 HOH 77 198 77 HOH HOH A . C 3 HOH 78 199 78 HOH HOH A . C 3 HOH 79 200 79 HOH HOH A . C 3 HOH 80 201 81 HOH HOH A . C 3 HOH 81 202 83 HOH HOH A . C 3 HOH 82 203 88 HOH HOH A . C 3 HOH 83 204 89 HOH HOH A . C 3 HOH 84 205 90 HOH HOH A . C 3 HOH 85 206 91 HOH HOH A . C 3 HOH 86 207 92 HOH HOH A . C 3 HOH 87 208 94 HOH HOH A . C 3 HOH 88 209 97 HOH HOH A . C 3 HOH 89 210 98 HOH HOH A . C 3 HOH 90 211 100 HOH HOH A . C 3 HOH 91 212 101 HOH HOH A . C 3 HOH 92 213 104 HOH HOH A . C 3 HOH 93 214 105 HOH HOH A . C 3 HOH 94 215 107 HOH HOH A . C 3 HOH 95 216 108 HOH HOH A . C 3 HOH 96 217 109 HOH HOH A . C 3 HOH 97 218 114 HOH HOH A . C 3 HOH 98 219 117 HOH HOH A . C 3 HOH 99 220 118 HOH HOH A . C 3 HOH 100 221 121 HOH HOH A . #