data_3VFZ # _entry.id 3VFZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VFZ RCSB RCSB069997 WWPDB D_1000069997 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VEP _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VFZ _pdbx_database_status.recvd_initial_deposition_date 2012-01-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jaiswal, R.K.' 1 'Thakur, K.G.' 2 'Gopal, B.' 3 # _citation.id primary _citation.title ;Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of sigma-factor activity by proteolysis ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 3414 _citation.page_last 3423 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23314154 _citation.pdbx_database_id_DOI 10.1093/nar/gks1468 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jaiswal, R.K.' 1 primary 'Prabha, T.S.' 2 primary 'Manjeera, G.' 3 primary 'Gopal, B.' 4 # _cell.entry_id 3VFZ _cell.length_a 80.430 _cell.length_b 35.700 _cell.length_c 50.920 _cell.angle_alpha 90.00 _cell.angle_beta 122.59 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VFZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable RNA polymerase sigma-D factor' 9469.253 2 ? ? 'UNP residues 141-212' ? 2 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSQDP(MSE)AIEADSVTR(MSE)NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ HRALQRLKDEIVAAGDYA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSQDPMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIV AAGDYA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 GLN n 1 13 ASP n 1 14 PRO n 1 15 MSE n 1 16 ALA n 1 17 ILE n 1 18 GLU n 1 19 ALA n 1 20 ASP n 1 21 SER n 1 22 VAL n 1 23 THR n 1 24 ARG n 1 25 MSE n 1 26 ASN n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 ILE n 1 32 LEU n 1 33 PRO n 1 34 ALA n 1 35 LYS n 1 36 GLN n 1 37 ARG n 1 38 GLU n 1 39 ILE n 1 40 LEU n 1 41 ILE n 1 42 LEU n 1 43 ARG n 1 44 VAL n 1 45 VAL n 1 46 VAL n 1 47 GLY n 1 48 LEU n 1 49 SER n 1 50 ALA n 1 51 GLU n 1 52 GLU n 1 53 THR n 1 54 ALA n 1 55 ALA n 1 56 ALA n 1 57 VAL n 1 58 GLY n 1 59 SER n 1 60 THR n 1 61 THR n 1 62 GLY n 1 63 ALA n 1 64 VAL n 1 65 ARG n 1 66 VAL n 1 67 ALA n 1 68 GLN n 1 69 HIS n 1 70 ARG n 1 71 ALA n 1 72 LEU n 1 73 GLN n 1 74 ARG n 1 75 LEU n 1 76 LYS n 1 77 ASP n 1 78 GLU n 1 79 ILE n 1 80 VAL n 1 81 ALA n 1 82 ALA n 1 83 GLY n 1 84 ASP n 1 85 TYR n 1 86 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Rv3414c, sigD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37Rv _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET Duet1' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RPSD_MYCTU _struct_ref.pdbx_db_accession P66811 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA _struct_ref.pdbx_align_begin 141 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VFZ A 15 ? 86 ? P66811 141 ? 212 ? 141 212 2 1 3VFZ B 15 ? 86 ? P66811 141 ? 212 ? 141 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VFZ MSE A 1 ? UNP P66811 ? ? 'EXPRESSION TAG' 127 1 1 3VFZ GLY A 2 ? UNP P66811 ? ? 'EXPRESSION TAG' 128 2 1 3VFZ SER A 3 ? UNP P66811 ? ? 'EXPRESSION TAG' 129 3 1 3VFZ SER A 4 ? UNP P66811 ? ? 'EXPRESSION TAG' 130 4 1 3VFZ HIS A 5 ? UNP P66811 ? ? 'EXPRESSION TAG' 131 5 1 3VFZ HIS A 6 ? UNP P66811 ? ? 'EXPRESSION TAG' 132 6 1 3VFZ HIS A 7 ? UNP P66811 ? ? 'EXPRESSION TAG' 133 7 1 3VFZ HIS A 8 ? UNP P66811 ? ? 'EXPRESSION TAG' 134 8 1 3VFZ HIS A 9 ? UNP P66811 ? ? 'EXPRESSION TAG' 135 9 1 3VFZ HIS A 10 ? UNP P66811 ? ? 'EXPRESSION TAG' 136 10 1 3VFZ SER A 11 ? UNP P66811 ? ? 'EXPRESSION TAG' 137 11 1 3VFZ GLN A 12 ? UNP P66811 ? ? 'EXPRESSION TAG' 138 12 1 3VFZ ASP A 13 ? UNP P66811 ? ? 'EXPRESSION TAG' 139 13 1 3VFZ PRO A 14 ? UNP P66811 ? ? 'EXPRESSION TAG' 140 14 2 3VFZ MSE B 1 ? UNP P66811 ? ? 'EXPRESSION TAG' 127 15 2 3VFZ GLY B 2 ? UNP P66811 ? ? 'EXPRESSION TAG' 128 16 2 3VFZ SER B 3 ? UNP P66811 ? ? 'EXPRESSION TAG' 129 17 2 3VFZ SER B 4 ? UNP P66811 ? ? 'EXPRESSION TAG' 130 18 2 3VFZ HIS B 5 ? UNP P66811 ? ? 'EXPRESSION TAG' 131 19 2 3VFZ HIS B 6 ? UNP P66811 ? ? 'EXPRESSION TAG' 132 20 2 3VFZ HIS B 7 ? UNP P66811 ? ? 'EXPRESSION TAG' 133 21 2 3VFZ HIS B 8 ? UNP P66811 ? ? 'EXPRESSION TAG' 134 22 2 3VFZ HIS B 9 ? UNP P66811 ? ? 'EXPRESSION TAG' 135 23 2 3VFZ HIS B 10 ? UNP P66811 ? ? 'EXPRESSION TAG' 136 24 2 3VFZ SER B 11 ? UNP P66811 ? ? 'EXPRESSION TAG' 137 25 2 3VFZ GLN B 12 ? UNP P66811 ? ? 'EXPRESSION TAG' 138 26 2 3VFZ ASP B 13 ? UNP P66811 ? ? 'EXPRESSION TAG' 139 27 2 3VFZ PRO B 14 ? UNP P66811 ? ? 'EXPRESSION TAG' 140 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VFZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.63 _exptl_crystal.density_percent_sol 24.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pdbx_details ;1.0-1.3M ammonium sulfate, 0.1M Tris-Cl, 5% 2-Methyl-2,4-pentanediol(MPD), 3% Glycerol, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 300K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2010-01-07 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.978 # _reflns.entry_id 3VFZ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 33.883 _reflns.d_resolution_high 1.9 _reflns.number_obs 9711 _reflns.number_all ? _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.588 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 10166 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VFZ _refine.ls_number_reflns_obs 9478 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.883 _refine.ls_d_res_high 1.901 _refine.ls_percent_reflns_obs 97.05 _refine.ls_R_factor_obs 0.1999 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1978 _refine.ls_R_factor_R_free 0.2384 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.81 _refine.ls_number_reflns_R_free 456 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.9634 _refine.aniso_B[1][1] -5.3144 _refine.aniso_B[2][2] 9.6949 _refine.aniso_B[3][3] -4.3805 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -3.8419 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.429 _refine.solvent_model_param_bsol 61.437 _refine.pdbx_solvent_vdw_probe_radii 0.70 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.38 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.B_iso_max 146.150 _refine.B_iso_min 19.840 _refine.pdbx_overall_phase_error 26.6100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 943 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 956 _refine_hist.d_res_high 1.901 _refine_hist.d_res_low 33.883 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 945 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1277 0.900 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 167 0.059 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 163 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 359 14.687 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.9013 2.1764 3 93.0000 2865 . 0.2277 0.2705 . 132 . 2997 . 'X-RAY DIFFRACTION' . 2.1764 2.7418 3 99.0000 3046 . 0.1855 0.2685 . 156 . 3202 . 'X-RAY DIFFRACTION' . 2.7418 33.8884 3 99.0000 3111 . 0.1970 0.2250 . 168 . 3279 . 'X-RAY DIFFRACTION' . # _struct.entry_id 3VFZ _struct.title 'Crystal structure of -35 promoter binding domain of SigD of Mycobacterium tuberculosis' _struct.pdbx_descriptor 'Probable RNA polymerase sigma-D factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VFZ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Transcription regulation, Promoter, Anti-sigma factors, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 20 ? GLU A 30 ? ASP A 146 GLU A 156 1 ? 11 HELX_P HELX_P2 2 PRO A 33 ? VAL A 45 ? PRO A 159 VAL A 171 1 ? 13 HELX_P HELX_P3 3 SER A 49 ? GLY A 58 ? SER A 175 GLY A 184 1 ? 10 HELX_P HELX_P4 4 THR A 60 ? ALA A 81 ? THR A 186 ALA A 207 1 ? 22 HELX_P HELX_P5 5 SER B 21 ? ILE B 31 ? SER B 147 ILE B 157 1 ? 11 HELX_P HELX_P6 6 PRO B 33 ? VAL B 45 ? PRO B 159 VAL B 171 1 ? 13 HELX_P HELX_P7 7 SER B 49 ? GLY B 58 ? SER B 175 GLY B 184 1 ? 10 HELX_P HELX_P8 8 THR B 60 ? ALA B 82 ? THR B 186 ALA B 208 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 24 C ? ? ? 1_555 A MSE 25 N ? ? A ARG 150 A MSE 151 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A ASN 26 N ? ? A MSE 151 A ASN 152 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? B ARG 24 C ? ? ? 1_555 B MSE 25 N ? ? B ARG 150 B MSE 151 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? B MSE 25 C ? ? ? 1_555 B ASN 26 N ? ? B MSE 151 B ASN 152 1_555 ? ? ? ? ? ? ? 1.321 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3VFZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VFZ _atom_sites.fract_transf_matrix[1][1] 0.012433 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007948 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023309 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 127 ? ? ? A . n A 1 2 GLY 2 128 ? ? ? A . n A 1 3 SER 3 129 ? ? ? A . n A 1 4 SER 4 130 ? ? ? A . n A 1 5 HIS 5 131 ? ? ? A . n A 1 6 HIS 6 132 ? ? ? A . n A 1 7 HIS 7 133 ? ? ? A . n A 1 8 HIS 8 134 ? ? ? A . n A 1 9 HIS 9 135 ? ? ? A . n A 1 10 HIS 10 136 ? ? ? A . n A 1 11 SER 11 137 ? ? ? A . n A 1 12 GLN 12 138 ? ? ? A . n A 1 13 ASP 13 139 ? ? ? A . n A 1 14 PRO 14 140 ? ? ? A . n A 1 15 MSE 15 141 ? ? ? A . n A 1 16 ALA 16 142 ? ? ? A . n A 1 17 ILE 17 143 ? ? ? A . n A 1 18 GLU 18 144 ? ? ? A . n A 1 19 ALA 19 145 ? ? ? A . n A 1 20 ASP 20 146 146 ASP ASP A . n A 1 21 SER 21 147 147 SER SER A . n A 1 22 VAL 22 148 148 VAL VAL A . n A 1 23 THR 23 149 149 THR THR A . n A 1 24 ARG 24 150 150 ARG ARG A . n A 1 25 MSE 25 151 151 MSE MSE A . n A 1 26 ASN 26 152 152 ASN ASN A . n A 1 27 GLU 27 153 153 GLU GLU A . n A 1 28 LEU 28 154 154 LEU LEU A . n A 1 29 LEU 29 155 155 LEU LEU A . n A 1 30 GLU 30 156 156 GLU GLU A . n A 1 31 ILE 31 157 157 ILE ILE A . n A 1 32 LEU 32 158 158 LEU LEU A . n A 1 33 PRO 33 159 159 PRO PRO A . n A 1 34 ALA 34 160 160 ALA ALA A . n A 1 35 LYS 35 161 161 LYS LYS A . n A 1 36 GLN 36 162 162 GLN GLN A . n A 1 37 ARG 37 163 163 ARG ARG A . n A 1 38 GLU 38 164 164 GLU GLU A . n A 1 39 ILE 39 165 165 ILE ILE A . n A 1 40 LEU 40 166 166 LEU LEU A . n A 1 41 ILE 41 167 167 ILE ILE A . n A 1 42 LEU 42 168 168 LEU LEU A . n A 1 43 ARG 43 169 169 ARG ARG A . n A 1 44 VAL 44 170 170 VAL VAL A . n A 1 45 VAL 45 171 171 VAL VAL A . n A 1 46 VAL 46 172 172 VAL VAL A . n A 1 47 GLY 47 173 173 GLY GLY A . n A 1 48 LEU 48 174 174 LEU LEU A . n A 1 49 SER 49 175 175 SER SER A . n A 1 50 ALA 50 176 176 ALA ALA A . n A 1 51 GLU 51 177 177 GLU GLU A . n A 1 52 GLU 52 178 178 GLU GLU A . n A 1 53 THR 53 179 179 THR THR A . n A 1 54 ALA 54 180 180 ALA ALA A . n A 1 55 ALA 55 181 181 ALA ALA A . n A 1 56 ALA 56 182 182 ALA ALA A . n A 1 57 VAL 57 183 183 VAL VAL A . n A 1 58 GLY 58 184 184 GLY GLY A . n A 1 59 SER 59 185 185 SER SER A . n A 1 60 THR 60 186 186 THR THR A . n A 1 61 THR 61 187 187 THR THR A . n A 1 62 GLY 62 188 188 GLY GLY A . n A 1 63 ALA 63 189 189 ALA ALA A . n A 1 64 VAL 64 190 190 VAL VAL A . n A 1 65 ARG 65 191 191 ARG ARG A . n A 1 66 VAL 66 192 192 VAL VAL A . n A 1 67 ALA 67 193 193 ALA ALA A . n A 1 68 GLN 68 194 194 GLN GLN A . n A 1 69 HIS 69 195 195 HIS HIS A . n A 1 70 ARG 70 196 196 ARG ARG A . n A 1 71 ALA 71 197 197 ALA ALA A . n A 1 72 LEU 72 198 198 LEU LEU A . n A 1 73 GLN 73 199 199 GLN GLN A . n A 1 74 ARG 74 200 200 ARG ARG A . n A 1 75 LEU 75 201 201 LEU LEU A . n A 1 76 LYS 76 202 202 LYS LYS A . n A 1 77 ASP 77 203 203 ASP ASP A . n A 1 78 GLU 78 204 204 GLU GLU A . n A 1 79 ILE 79 205 205 ILE ILE A . n A 1 80 VAL 80 206 206 VAL VAL A . n A 1 81 ALA 81 207 207 ALA ALA A . n A 1 82 ALA 82 208 ? ? ? A . n A 1 83 GLY 83 209 ? ? ? A . n A 1 84 ASP 84 210 ? ? ? A . n A 1 85 TYR 85 211 ? ? ? A . n A 1 86 ALA 86 212 ? ? ? A . n B 1 1 MSE 1 127 ? ? ? B . n B 1 2 GLY 2 128 ? ? ? B . n B 1 3 SER 3 129 ? ? ? B . n B 1 4 SER 4 130 ? ? ? B . n B 1 5 HIS 5 131 ? ? ? B . n B 1 6 HIS 6 132 ? ? ? B . n B 1 7 HIS 7 133 ? ? ? B . n B 1 8 HIS 8 134 ? ? ? B . n B 1 9 HIS 9 135 ? ? ? B . n B 1 10 HIS 10 136 ? ? ? B . n B 1 11 SER 11 137 ? ? ? B . n B 1 12 GLN 12 138 ? ? ? B . n B 1 13 ASP 13 139 ? ? ? B . n B 1 14 PRO 14 140 ? ? ? B . n B 1 15 MSE 15 141 ? ? ? B . n B 1 16 ALA 16 142 ? ? ? B . n B 1 17 ILE 17 143 ? ? ? B . n B 1 18 GLU 18 144 ? ? ? B . n B 1 19 ALA 19 145 ? ? ? B . n B 1 20 ASP 20 146 146 ASP ASP B . n B 1 21 SER 21 147 147 SER SER B . n B 1 22 VAL 22 148 148 VAL VAL B . n B 1 23 THR 23 149 149 THR THR B . n B 1 24 ARG 24 150 150 ARG ARG B . n B 1 25 MSE 25 151 151 MSE MSE B . n B 1 26 ASN 26 152 152 ASN ASN B . n B 1 27 GLU 27 153 153 GLU GLU B . n B 1 28 LEU 28 154 154 LEU LEU B . n B 1 29 LEU 29 155 155 LEU LEU B . n B 1 30 GLU 30 156 156 GLU GLU B . n B 1 31 ILE 31 157 157 ILE ILE B . n B 1 32 LEU 32 158 158 LEU LEU B . n B 1 33 PRO 33 159 159 PRO PRO B . n B 1 34 ALA 34 160 160 ALA ALA B . n B 1 35 LYS 35 161 161 LYS LYS B . n B 1 36 GLN 36 162 162 GLN GLN B . n B 1 37 ARG 37 163 163 ARG ARG B . n B 1 38 GLU 38 164 164 GLU GLU B . n B 1 39 ILE 39 165 165 ILE ILE B . n B 1 40 LEU 40 166 166 LEU LEU B . n B 1 41 ILE 41 167 167 ILE ILE B . n B 1 42 LEU 42 168 168 LEU LEU B . n B 1 43 ARG 43 169 169 ARG ARG B . n B 1 44 VAL 44 170 170 VAL VAL B . n B 1 45 VAL 45 171 171 VAL VAL B . n B 1 46 VAL 46 172 172 VAL VAL B . n B 1 47 GLY 47 173 173 GLY GLY B . n B 1 48 LEU 48 174 174 LEU LEU B . n B 1 49 SER 49 175 175 SER SER B . n B 1 50 ALA 50 176 176 ALA ALA B . n B 1 51 GLU 51 177 177 GLU GLU B . n B 1 52 GLU 52 178 178 GLU GLU B . n B 1 53 THR 53 179 179 THR THR B . n B 1 54 ALA 54 180 180 ALA ALA B . n B 1 55 ALA 55 181 181 ALA ALA B . n B 1 56 ALA 56 182 182 ALA ALA B . n B 1 57 VAL 57 183 183 VAL VAL B . n B 1 58 GLY 58 184 184 GLY GLY B . n B 1 59 SER 59 185 185 SER SER B . n B 1 60 THR 60 186 186 THR THR B . n B 1 61 THR 61 187 187 THR THR B . n B 1 62 GLY 62 188 188 GLY GLY B . n B 1 63 ALA 63 189 189 ALA ALA B . n B 1 64 VAL 64 190 190 VAL VAL B . n B 1 65 ARG 65 191 191 ARG ARG B . n B 1 66 VAL 66 192 192 VAL VAL B . n B 1 67 ALA 67 193 193 ALA ALA B . n B 1 68 GLN 68 194 194 GLN GLN B . n B 1 69 HIS 69 195 195 HIS HIS B . n B 1 70 ARG 70 196 196 ARG ARG B . n B 1 71 ALA 71 197 197 ALA ALA B . n B 1 72 LEU 72 198 198 LEU LEU B . n B 1 73 GLN 73 199 199 GLN GLN B . n B 1 74 ARG 74 200 200 ARG ARG B . n B 1 75 LEU 75 201 201 LEU LEU B . n B 1 76 LYS 76 202 202 LYS LYS B . n B 1 77 ASP 77 203 203 ASP ASP B . n B 1 78 GLU 78 204 204 GLU GLU B . n B 1 79 ILE 79 205 205 ILE ILE B . n B 1 80 VAL 80 206 206 VAL VAL B . n B 1 81 ALA 81 207 207 ALA ALA B . n B 1 82 ALA 82 208 208 ALA ALA B . n B 1 83 GLY 83 209 ? ? ? B . n B 1 84 ASP 84 210 ? ? ? B . n B 1 85 TYR 85 211 ? ? ? B . n B 1 86 ALA 86 212 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 151 ? MET SELENOMETHIONINE 2 B MSE 25 B MSE 151 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D 3 1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 1820 ? 3 MORE -16 ? 3 'SSA (A^2)' 6660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-13 2 'Structure model' 1 1 2013-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -20.8652 -7.5999 12.5928 0.5645 0.4016 0.4002 -0.0338 -0.0970 -0.0320 2.8651 0.5499 3.2360 0.6717 -0.4259 -0.8002 0.7349 -0.2264 -0.2267 -0.5499 -0.5773 -0.1207 0.4308 0.6095 0.3635 'X-RAY DIFFRACTION' 2 ? refined -16.4168 3.8441 14.4438 0.2382 0.2103 0.3066 0.0204 -0.0254 0.0216 2.8144 0.0862 3.8325 -0.4617 0.8605 0.0401 0.0992 -0.0874 -0.0023 0.0034 0.0371 -0.2501 -0.0200 -0.6525 -0.0652 'X-RAY DIFFRACTION' 3 ? refined -12.4703 9.8013 8.6393 0.4243 0.2838 0.2992 -0.1068 -0.0655 0.1414 0.6437 0.4921 0.7065 0.2413 0.0930 0.0073 -0.0345 -0.3207 -0.3496 0.1299 0.0352 -0.1236 0.3184 -0.1063 0.1949 'X-RAY DIFFRACTION' 4 ? refined -24.8344 -2.6046 2.5136 0.3087 0.4203 0.2015 0.0432 0.0077 -0.1128 0.5185 1.4443 0.2429 -0.0650 0.0739 -0.2908 0.1857 -0.1502 0.0218 0.2481 0.0773 0.0452 -0.6915 0.1461 0.0847 'X-RAY DIFFRACTION' 5 ? refined -26.0722 8.8925 13.7158 0.3999 0.4219 0.3816 0.1338 -0.0178 -0.0305 1.5900 3.0225 3.3911 0.1761 -1.1388 -1.7074 -0.4473 0.4143 0.0465 -0.0598 0.1407 -0.0048 -0.3155 -0.0947 -1.0478 'X-RAY DIFFRACTION' 6 ? refined -28.0797 5.6318 25.9486 0.6916 0.5971 0.4449 0.1496 -0.2085 -0.0820 2.2525 0.7627 3.8617 0.5984 -1.6303 0.4492 0.5123 -0.3563 -0.0225 0.4580 -0.4323 -0.3320 0.7380 -2.0036 -0.8114 'X-RAY DIFFRACTION' 7 ? refined -25.0273 -6.0410 27.9572 0.3357 0.4392 0.3347 -0.1986 -0.0493 0.1242 2.6990 0.5122 0.5607 0.1985 0.5102 0.4965 0.1035 0.1548 -0.0349 -0.5928 0.2603 0.2181 0.1743 0.5164 -0.5535 'X-RAY DIFFRACTION' 8 ? refined -31.8826 0.9912 12.6125 0.2591 0.4765 0.3933 0.0830 -0.0185 0.0751 0.6236 1.9482 3.5581 -0.5296 -1.1174 2.4885 -0.1272 -0.1978 0.0849 -0.0432 -0.7866 0.3995 -0.3313 -0.9211 -1.1307 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 146 A 161 '(chain A and resid 146:161)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 162 A 175 '(chain A and resid 162:175)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 176 A 195 '(chain A and resid 176:195)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 196 A 207 '(chain A and resid 196:207)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 146 B 155 '(chain B and resid 146:155)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 156 B 163 '(chain B and resid 156:163)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 164 B 195 '(chain B and resid 164:195)' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 196 B 208 '(chain B and resid 196:208)' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 127 ? A MSE 1 2 1 Y 1 A GLY 128 ? A GLY 2 3 1 Y 1 A SER 129 ? A SER 3 4 1 Y 1 A SER 130 ? A SER 4 5 1 Y 1 A HIS 131 ? A HIS 5 6 1 Y 1 A HIS 132 ? A HIS 6 7 1 Y 1 A HIS 133 ? A HIS 7 8 1 Y 1 A HIS 134 ? A HIS 8 9 1 Y 1 A HIS 135 ? A HIS 9 10 1 Y 1 A HIS 136 ? A HIS 10 11 1 Y 1 A SER 137 ? A SER 11 12 1 Y 1 A GLN 138 ? A GLN 12 13 1 Y 1 A ASP 139 ? A ASP 13 14 1 Y 1 A PRO 140 ? A PRO 14 15 1 Y 1 A MSE 141 ? A MSE 15 16 1 Y 1 A ALA 142 ? A ALA 16 17 1 Y 1 A ILE 143 ? A ILE 17 18 1 Y 1 A GLU 144 ? A GLU 18 19 1 Y 1 A ALA 145 ? A ALA 19 20 1 Y 1 A ALA 208 ? A ALA 82 21 1 Y 1 A GLY 209 ? A GLY 83 22 1 Y 1 A ASP 210 ? A ASP 84 23 1 Y 1 A TYR 211 ? A TYR 85 24 1 Y 1 A ALA 212 ? A ALA 86 25 1 Y 1 B MSE 127 ? B MSE 1 26 1 Y 1 B GLY 128 ? B GLY 2 27 1 Y 1 B SER 129 ? B SER 3 28 1 Y 1 B SER 130 ? B SER 4 29 1 Y 1 B HIS 131 ? B HIS 5 30 1 Y 1 B HIS 132 ? B HIS 6 31 1 Y 1 B HIS 133 ? B HIS 7 32 1 Y 1 B HIS 134 ? B HIS 8 33 1 Y 1 B HIS 135 ? B HIS 9 34 1 Y 1 B HIS 136 ? B HIS 10 35 1 Y 1 B SER 137 ? B SER 11 36 1 Y 1 B GLN 138 ? B GLN 12 37 1 Y 1 B ASP 139 ? B ASP 13 38 1 Y 1 B PRO 140 ? B PRO 14 39 1 Y 1 B MSE 141 ? B MSE 15 40 1 Y 1 B ALA 142 ? B ALA 16 41 1 Y 1 B ILE 143 ? B ILE 17 42 1 Y 1 B GLU 144 ? B GLU 18 43 1 Y 1 B ALA 145 ? B ALA 19 44 1 Y 1 B GLY 209 ? B GLY 83 45 1 Y 1 B ASP 210 ? B ASP 84 46 1 Y 1 B TYR 211 ? B TYR 85 47 1 Y 1 B ALA 212 ? B ALA 86 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 301 2 HOH HOH A . C 2 HOH 2 302 4 HOH HOH A . C 2 HOH 3 303 5 HOH HOH A . C 2 HOH 4 304 6 HOH HOH A . C 2 HOH 5 305 7 HOH HOH A . C 2 HOH 6 306 8 HOH HOH A . C 2 HOH 7 307 10 HOH HOH A . C 2 HOH 8 308 12 HOH HOH A . C 2 HOH 9 309 13 HOH HOH A . D 2 HOH 1 301 1 HOH HOH B . D 2 HOH 2 302 3 HOH HOH B . D 2 HOH 3 303 9 HOH HOH B . D 2 HOH 4 304 11 HOH HOH B . #