data_3VNN # _entry.id 3VNN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VNN pdb_00003vnn 10.2210/pdb3vnn/pdb RCSB RCSB095271 ? ? WWPDB D_1000095271 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2013-07-24 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VNN _pdbx_database_status.recvd_initial_deposition_date 2012-01-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1X9N 'A human homolog' unspecified PDB 3L2P 'A human homolog' unspecified PDB 1IK9 'A different polypeptide from the same protein' unspecified PDB 3II6 'The BRCT domains of the same protein' unspecified PDB 2E2W 'The first BRCT domain of the same protein' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ochi, T.' 1 'Wu, Q.' 2 'Chirgadze, D.Y.' 3 'Grossmann, J.G.' 4 'Bolanos-Garcia, V.M.' 5 'Blundell, T.L.' 6 # _citation.id primary _citation.title 'Structural insights into the role of domain flexibility in human DNA ligase IV' _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 1212 _citation.page_last 1222 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22658747 _citation.pdbx_database_id_DOI 10.1016/j.str.2012.04.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ochi, T.' 1 ? primary 'Wu, Q.' 2 ? primary 'Chirgadze, D.Y.' 3 ? primary 'Grossmann, J.G.' 4 ? primary 'Bolanos-Garcia, V.M.' 5 ? primary 'Blundell, T.L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA ligase 4' 16196.514 1 6.5.1.1 ? 'A sub-domain of the nucleotidyltransferase (adenylation) domain, UNP residues 268-405' ? 2 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA ligase IV, Polydeoxyribonucleotide synthase [ATP] 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT KFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT ; _entity_poly.pdbx_seq_one_letter_code_can ;FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT KFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 TYR n 1 3 ILE n 1 4 GLU n 1 5 THR n 1 6 LYS n 1 7 LEU n 1 8 ASP n 1 9 GLY n 1 10 GLU n 1 11 ARG n 1 12 MET n 1 13 GLN n 1 14 MET n 1 15 HIS n 1 16 LYS n 1 17 ASP n 1 18 GLY n 1 19 ASP n 1 20 VAL n 1 21 TYR n 1 22 LYS n 1 23 TYR n 1 24 PHE n 1 25 SER n 1 26 ARG n 1 27 ASN n 1 28 GLY n 1 29 TYR n 1 30 ASN n 1 31 TYR n 1 32 THR n 1 33 ASP n 1 34 GLN n 1 35 PHE n 1 36 GLY n 1 37 ALA n 1 38 SER n 1 39 PRO n 1 40 THR n 1 41 GLU n 1 42 GLY n 1 43 SER n 1 44 LEU n 1 45 THR n 1 46 PRO n 1 47 PHE n 1 48 ILE n 1 49 HIS n 1 50 ASN n 1 51 ALA n 1 52 PHE n 1 53 LYS n 1 54 ALA n 1 55 ASP n 1 56 ILE n 1 57 GLN n 1 58 ILE n 1 59 CYS n 1 60 ILE n 1 61 LEU n 1 62 ASP n 1 63 GLY n 1 64 GLU n 1 65 MET n 1 66 MET n 1 67 ALA n 1 68 TYR n 1 69 ASN n 1 70 PRO n 1 71 ASN n 1 72 THR n 1 73 GLN n 1 74 THR n 1 75 PHE n 1 76 MET n 1 77 GLN n 1 78 LYS n 1 79 GLY n 1 80 THR n 1 81 LYS n 1 82 PHE n 1 83 ASP n 1 84 ILE n 1 85 LYS n 1 86 ARG n 1 87 MET n 1 88 VAL n 1 89 GLU n 1 90 ASP n 1 91 SER n 1 92 ASP n 1 93 LEU n 1 94 GLN n 1 95 THR n 1 96 CYS n 1 97 TYR n 1 98 CYS n 1 99 VAL n 1 100 PHE n 1 101 ASP n 1 102 VAL n 1 103 LEU n 1 104 MET n 1 105 VAL n 1 106 ASN n 1 107 ASN n 1 108 LYS n 1 109 LYS n 1 110 LEU n 1 111 GLY n 1 112 HIS n 1 113 GLU n 1 114 THR n 1 115 LEU n 1 116 ARG n 1 117 LYS n 1 118 ARG n 1 119 TYR n 1 120 GLU n 1 121 ILE n 1 122 LEU n 1 123 SER n 1 124 SER n 1 125 ILE n 1 126 PHE n 1 127 THR n 1 128 PRO n 1 129 ILE n 1 130 PRO n 1 131 GLY n 1 132 ARG n 1 133 ILE n 1 134 GLU n 1 135 ILE n 1 136 VAL n 1 137 GLN n 1 138 LYS n 1 139 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LIG4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details Hippocampus _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHAT5 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 268 268 PHE PHE A . n A 1 2 TYR 2 269 269 TYR TYR A . n A 1 3 ILE 3 270 270 ILE ILE A . n A 1 4 GLU 4 271 271 GLU GLU A . n A 1 5 THR 5 272 272 THR THR A . n A 1 6 LYS 6 273 273 LYS LYS A . n A 1 7 LEU 7 274 274 LEU LEU A . n A 1 8 ASP 8 275 275 ASP ASP A . n A 1 9 GLY 9 276 276 GLY GLY A . n A 1 10 GLU 10 277 277 GLU GLU A . n A 1 11 ARG 11 278 278 ARG ARG A . n A 1 12 MET 12 279 279 MET MET A . n A 1 13 GLN 13 280 280 GLN GLN A . n A 1 14 MET 14 281 281 MET MET A . n A 1 15 HIS 15 282 282 HIS HIS A . n A 1 16 LYS 16 283 283 LYS LYS A . n A 1 17 ASP 17 284 284 ASP ASP A . n A 1 18 GLY 18 285 285 GLY GLY A . n A 1 19 ASP 19 286 286 ASP ASP A . n A 1 20 VAL 20 287 287 VAL VAL A . n A 1 21 TYR 21 288 288 TYR TYR A . n A 1 22 LYS 22 289 289 LYS LYS A . n A 1 23 TYR 23 290 290 TYR TYR A . n A 1 24 PHE 24 291 291 PHE PHE A . n A 1 25 SER 25 292 292 SER SER A . n A 1 26 ARG 26 293 293 ARG ARG A . n A 1 27 ASN 27 294 294 ASN ASN A . n A 1 28 GLY 28 295 295 GLY GLY A . n A 1 29 TYR 29 296 296 TYR TYR A . n A 1 30 ASN 30 297 297 ASN ASN A . n A 1 31 TYR 31 298 298 TYR TYR A . n A 1 32 THR 32 299 299 THR THR A . n A 1 33 ASP 33 300 300 ASP ASP A . n A 1 34 GLN 34 301 301 GLN GLN A . n A 1 35 PHE 35 302 302 PHE PHE A . n A 1 36 GLY 36 303 303 GLY GLY A . n A 1 37 ALA 37 304 304 ALA ALA A . n A 1 38 SER 38 305 305 SER SER A . n A 1 39 PRO 39 306 306 PRO PRO A . n A 1 40 THR 40 307 307 THR THR A . n A 1 41 GLU 41 308 308 GLU GLU A . n A 1 42 GLY 42 309 ? ? ? A . n A 1 43 SER 43 310 ? ? ? A . n A 1 44 LEU 44 311 311 LEU LEU A . n A 1 45 THR 45 312 312 THR THR A . n A 1 46 PRO 46 313 313 PRO PRO A . n A 1 47 PHE 47 314 314 PHE PHE A . n A 1 48 ILE 48 315 315 ILE ILE A . n A 1 49 HIS 49 316 316 HIS HIS A . n A 1 50 ASN 50 317 317 ASN ASN A . n A 1 51 ALA 51 318 318 ALA ALA A . n A 1 52 PHE 52 319 319 PHE PHE A . n A 1 53 LYS 53 320 320 LYS LYS A . n A 1 54 ALA 54 321 321 ALA ALA A . n A 1 55 ASP 55 322 322 ASP ASP A . n A 1 56 ILE 56 323 323 ILE ILE A . n A 1 57 GLN 57 324 324 GLN GLN A . n A 1 58 ILE 58 325 325 ILE ILE A . n A 1 59 CYS 59 326 326 CYS CYS A . n A 1 60 ILE 60 327 327 ILE ILE A . n A 1 61 LEU 61 328 328 LEU LEU A . n A 1 62 ASP 62 329 329 ASP ASP A . n A 1 63 GLY 63 330 330 GLY GLY A . n A 1 64 GLU 64 331 331 GLU GLU A . n A 1 65 MET 65 332 332 MET MET A . n A 1 66 MET 66 333 333 MET MET A . n A 1 67 ALA 67 334 334 ALA ALA A . n A 1 68 TYR 68 335 335 TYR TYR A . n A 1 69 ASN 69 336 336 ASN ASN A . n A 1 70 PRO 70 337 337 PRO PRO A . n A 1 71 ASN 71 338 338 ASN ASN A . n A 1 72 THR 72 339 339 THR THR A . n A 1 73 GLN 73 340 340 GLN GLN A . n A 1 74 THR 74 341 341 THR THR A . n A 1 75 PHE 75 342 342 PHE PHE A . n A 1 76 MET 76 343 343 MET MET A . n A 1 77 GLN 77 344 344 GLN GLN A . n A 1 78 LYS 78 345 345 LYS LYS A . n A 1 79 GLY 79 346 ? ? ? A . n A 1 80 THR 80 347 ? ? ? A . n A 1 81 LYS 81 348 ? ? ? A . n A 1 82 PHE 82 349 ? ? ? A . n A 1 83 ASP 83 350 ? ? ? A . n A 1 84 ILE 84 351 ? ? ? A . n A 1 85 LYS 85 352 ? ? ? A . n A 1 86 ARG 86 353 ? ? ? A . n A 1 87 MET 87 354 ? ? ? A . n A 1 88 VAL 88 355 ? ? ? A . n A 1 89 GLU 89 356 ? ? ? A . n A 1 90 ASP 90 357 ? ? ? A . n A 1 91 SER 91 358 ? ? ? A . n A 1 92 ASP 92 359 359 ASP ASP A . n A 1 93 LEU 93 360 360 LEU LEU A . n A 1 94 GLN 94 361 361 GLN GLN A . n A 1 95 THR 95 362 362 THR THR A . n A 1 96 CYS 96 363 363 CYS CYS A . n A 1 97 TYR 97 364 364 TYR TYR A . n A 1 98 CYS 98 365 365 CYS CYS A . n A 1 99 VAL 99 366 366 VAL VAL A . n A 1 100 PHE 100 367 367 PHE PHE A . n A 1 101 ASP 101 368 368 ASP ASP A . n A 1 102 VAL 102 369 369 VAL VAL A . n A 1 103 LEU 103 370 370 LEU LEU A . n A 1 104 MET 104 371 371 MET MET A . n A 1 105 VAL 105 372 372 VAL VAL A . n A 1 106 ASN 106 373 373 ASN ASN A . n A 1 107 ASN 107 374 374 ASN ASN A . n A 1 108 LYS 108 375 375 LYS LYS A . n A 1 109 LYS 109 376 376 LYS LYS A . n A 1 110 LEU 110 377 377 LEU LEU A . n A 1 111 GLY 111 378 378 GLY GLY A . n A 1 112 HIS 112 379 379 HIS HIS A . n A 1 113 GLU 113 380 380 GLU GLU A . n A 1 114 THR 114 381 381 THR THR A . n A 1 115 LEU 115 382 382 LEU LEU A . n A 1 116 ARG 116 383 383 ARG ARG A . n A 1 117 LYS 117 384 384 LYS LYS A . n A 1 118 ARG 118 385 385 ARG ARG A . n A 1 119 TYR 119 386 386 TYR TYR A . n A 1 120 GLU 120 387 387 GLU GLU A . n A 1 121 ILE 121 388 388 ILE ILE A . n A 1 122 LEU 122 389 389 LEU LEU A . n A 1 123 SER 123 390 390 SER SER A . n A 1 124 SER 124 391 391 SER SER A . n A 1 125 ILE 125 392 392 ILE ILE A . n A 1 126 PHE 126 393 393 PHE PHE A . n A 1 127 THR 127 394 394 THR THR A . n A 1 128 PRO 128 395 395 PRO PRO A . n A 1 129 ILE 129 396 396 ILE ILE A . n A 1 130 PRO 130 397 397 PRO PRO A . n A 1 131 GLY 131 398 398 GLY GLY A . n A 1 132 ARG 132 399 399 ARG ARG A . n A 1 133 ILE 133 400 400 ILE ILE A . n A 1 134 GLU 134 401 401 GLU GLU A . n A 1 135 ILE 135 402 402 ILE ILE A . n A 1 136 VAL 136 403 403 VAL VAL A . n A 1 137 GLN 137 404 404 GLN GLN A . n A 1 138 LYS 138 405 405 LYS LYS A . n A 1 139 THR 139 406 406 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 1 HOH HOH A . B 2 HOH 2 502 2 HOH HOH A . B 2 HOH 3 503 3 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 273 ? CG ? A LYS 6 CG 2 1 Y 1 A LYS 273 ? CD ? A LYS 6 CD 3 1 Y 1 A LYS 273 ? CE ? A LYS 6 CE 4 1 Y 1 A LYS 273 ? NZ ? A LYS 6 NZ 5 1 Y 1 A LYS 283 ? CG ? A LYS 16 CG 6 1 Y 1 A LYS 283 ? CD ? A LYS 16 CD 7 1 Y 1 A LYS 283 ? CE ? A LYS 16 CE 8 1 Y 1 A LYS 283 ? NZ ? A LYS 16 NZ 9 1 Y 1 A ASP 284 ? CG ? A ASP 17 CG 10 1 Y 1 A ASP 284 ? OD1 ? A ASP 17 OD1 11 1 Y 1 A ASP 284 ? OD2 ? A ASP 17 OD2 12 1 Y 1 A LYS 289 ? CG ? A LYS 22 CG 13 1 Y 1 A LYS 289 ? CD ? A LYS 22 CD 14 1 Y 1 A LYS 289 ? CE ? A LYS 22 CE 15 1 Y 1 A LYS 289 ? NZ ? A LYS 22 NZ 16 1 Y 1 A SER 305 ? OG ? A SER 38 OG 17 1 Y 1 A ILE 315 ? CG1 ? A ILE 48 CG1 18 1 Y 1 A ILE 315 ? CG2 ? A ILE 48 CG2 19 1 Y 1 A ILE 315 ? CD1 ? A ILE 48 CD1 20 1 Y 1 A LYS 320 ? CG ? A LYS 53 CG 21 1 Y 1 A LYS 320 ? CD ? A LYS 53 CD 22 1 Y 1 A LYS 320 ? CE ? A LYS 53 CE 23 1 Y 1 A LYS 320 ? NZ ? A LYS 53 NZ 24 1 Y 1 A MET 343 ? CG ? A MET 76 CG 25 1 Y 1 A MET 343 ? SD ? A MET 76 SD 26 1 Y 1 A MET 343 ? CE ? A MET 76 CE 27 1 Y 1 A LYS 345 ? CG ? A LYS 78 CG 28 1 Y 1 A LYS 345 ? CD ? A LYS 78 CD 29 1 Y 1 A LYS 345 ? CE ? A LYS 78 CE 30 1 Y 1 A LYS 345 ? NZ ? A LYS 78 NZ 31 1 Y 1 A LEU 360 ? CG ? A LEU 93 CG 32 1 Y 1 A LEU 360 ? CD1 ? A LEU 93 CD1 33 1 Y 1 A LEU 360 ? CD2 ? A LEU 93 CD2 34 1 Y 1 A GLN 361 ? CG ? A GLN 94 CG 35 1 Y 1 A GLN 361 ? CD ? A GLN 94 CD 36 1 Y 1 A GLN 361 ? OE1 ? A GLN 94 OE1 37 1 Y 1 A GLN 361 ? NE2 ? A GLN 94 NE2 38 1 Y 1 A ASN 374 ? CG ? A ASN 107 CG 39 1 Y 1 A ASN 374 ? OD1 ? A ASN 107 OD1 40 1 Y 1 A ASN 374 ? ND2 ? A ASN 107 ND2 41 1 Y 1 A LYS 375 ? CG ? A LYS 108 CG 42 1 Y 1 A LYS 375 ? CD ? A LYS 108 CD 43 1 Y 1 A LYS 375 ? CE ? A LYS 108 CE 44 1 Y 1 A LYS 375 ? NZ ? A LYS 108 NZ 45 1 Y 1 A LYS 376 ? CG ? A LYS 109 CG 46 1 Y 1 A LYS 376 ? CD ? A LYS 109 CD 47 1 Y 1 A LYS 376 ? CE ? A LYS 109 CE 48 1 Y 1 A LYS 376 ? NZ ? A LYS 109 NZ 49 1 Y 1 A LEU 377 ? CG ? A LEU 110 CG 50 1 Y 1 A LEU 377 ? CD1 ? A LEU 110 CD1 51 1 Y 1 A LEU 377 ? CD2 ? A LEU 110 CD2 52 1 Y 1 A ARG 383 ? CG ? A ARG 116 CG 53 1 Y 1 A ARG 383 ? CD ? A ARG 116 CD 54 1 Y 1 A ARG 383 ? NE ? A ARG 116 NE 55 1 Y 1 A ARG 383 ? CZ ? A ARG 116 CZ 56 1 Y 1 A ARG 383 ? NH1 ? A ARG 116 NH1 57 1 Y 1 A ARG 383 ? NH2 ? A ARG 116 NH2 58 1 Y 1 A LYS 384 ? CG ? A LYS 117 CG 59 1 Y 1 A LYS 384 ? CD ? A LYS 117 CD 60 1 Y 1 A LYS 384 ? CE ? A LYS 117 CE 61 1 Y 1 A LYS 384 ? NZ ? A LYS 117 NZ 62 1 Y 1 A GLU 387 ? CG ? A GLU 120 CG 63 1 Y 1 A GLU 387 ? CD ? A GLU 120 CD 64 1 Y 1 A GLU 387 ? OE1 ? A GLU 120 OE1 65 1 Y 1 A GLU 387 ? OE2 ? A GLU 120 OE2 66 1 Y 1 A GLN 404 ? CG ? A GLN 137 CG 67 1 Y 1 A GLN 404 ? CD ? A GLN 137 CD 68 1 Y 1 A GLN 404 ? OE1 ? A GLN 137 OE1 69 1 Y 1 A GLN 404 ? NE2 ? A GLN 137 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3VNN _cell.length_a 39.086 _cell.length_b 39.086 _cell.length_c 197.393 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VNN _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VNN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '7.5% PEG 6000, 100mM MES, 0.01mg/ml papain, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9765 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9765 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3VNN _reflns.observed_criterion_sigma_I 2.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.9 _reflns.number_obs 3860 _reflns.number_all 3907 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.B_iso_Wilson_estimate 89.060 _reflns.pdbx_redundancy 11.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.97 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.544 _reflns_shell.pdbx_Rsym_value 0.544 _reflns_shell.meanI_over_sigI_obs 5.19 _reflns_shell.pdbx_redundancy 11.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3VNN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3811 _refine.ls_number_reflns_all 2263 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.640 _refine.ls_d_res_high 2.903 _refine.ls_percent_reflns_obs 98.88 _refine.ls_R_factor_obs 0.2767 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2733 _refine.ls_R_factor_R_free 0.3049 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 381 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 109.8132 _refine.aniso_B[1][1] 8.8971 _refine.aniso_B[2][2] 8.8971 _refine.aniso_B[3][3] -17.7942 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.318 _refine.solvent_model_param_bsol 95.262 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.29 _refine.pdbx_overall_phase_error 30.64 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_FOM_work_R_set 0.7276 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 949 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 952 _refine_hist.d_res_high 2.903 _refine_hist.d_res_low 30.640 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.014 ? ? 970 'X-RAY DIFFRACTION' ? f_angle_d 1.971 ? ? 1319 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.975 ? ? 331 'X-RAY DIFFRACTION' ? f_chiral_restr 0.156 ? ? 147 'X-RAY DIFFRACTION' ? f_plane_restr 0.011 ? ? 173 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.9028 3.3224 1100 0.3042 100.00 0.3909 . . 121 . . . . 'X-RAY DIFFRACTION' . 3.3224 4.1842 1127 0.2581 100.00 0.2978 . . 126 . . . . 'X-RAY DIFFRACTION' . 4.1842 30.6413 1203 0.2742 98.00 0.2920 . . 134 . . . . # _database_PDB_matrix.entry_id 3VNN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VNN _struct.title 'Crystal Structure of a sub-domain of the nucleotidyltransferase (adenylation) domain of human DNA ligase IV' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VNN _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'DNA ligase, non-homologous end joining, DNA repair, XRCC4, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DNLI4_HUMAN _struct_ref.pdbx_db_accession P49917 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT KFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT ; _struct_ref.pdbx_align_begin 268 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VNN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49917 _struct_ref_seq.db_align_beg 268 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 406 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 268 _struct_ref_seq.pdbx_auth_seq_align_end 406 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 46 ? ASN A 50 ? PRO A 313 ASN A 317 5 ? 5 HELX_P HELX_P2 2 THR A 114 ? PHE A 126 ? THR A 381 PHE A 393 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 20 ? PHE A 24 ? VAL A 287 PHE A 291 A 2 GLU A 10 ? ASP A 17 ? GLU A 277 ASP A 284 A 3 ILE A 58 ? ASN A 69 ? ILE A 325 ASN A 336 A 4 THR A 74 ? PHE A 75 ? THR A 341 PHE A 342 B 1 VAL A 20 ? PHE A 24 ? VAL A 287 PHE A 291 B 2 GLU A 10 ? ASP A 17 ? GLU A 277 ASP A 284 B 3 ILE A 58 ? ASN A 69 ? ILE A 325 ASN A 336 B 4 GLN A 94 ? VAL A 105 ? GLN A 361 VAL A 372 B 5 LYS A 108 ? LYS A 109 ? LYS A 375 LYS A 376 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 20 ? O VAL A 287 N ASP A 17 ? N ASP A 284 A 2 3 N GLU A 10 ? N GLU A 277 O MET A 65 ? O MET A 332 A 3 4 N ASN A 69 ? N ASN A 336 O THR A 74 ? O THR A 341 B 1 2 O VAL A 20 ? O VAL A 287 N ASP A 17 ? N ASP A 284 B 2 3 N GLU A 10 ? N GLU A 277 O MET A 65 ? O MET A 332 B 3 4 N ILE A 60 ? N ILE A 327 O MET A 104 ? O MET A 371 B 4 5 N VAL A 105 ? N VAL A 372 O LYS A 108 ? O LYS A 375 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG1 A VAL 369 ? ? CD1 A LEU 389 ? ? 1.55 2 1 O A GLU 380 ? ? NH1 A ARG 385 ? ? 2.09 3 1 O A ASP 322 ? ? ND2 A ASN 373 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CZ _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TYR _pdbx_validate_rmsd_bond.auth_seq_id_1 288 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TYR _pdbx_validate_rmsd_bond.auth_seq_id_2 288 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.290 _pdbx_validate_rmsd_bond.bond_target_value 1.381 _pdbx_validate_rmsd_bond.bond_deviation -0.091 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PHE 393 ? ? CA A PHE 393 ? ? C A PHE 393 ? ? 127.92 111.00 16.92 2.70 N 2 1 C A ILE 396 ? ? N A PRO 397 ? ? CA A PRO 397 ? ? 109.88 119.30 -9.42 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 286 ? ? 89.52 -7.24 2 1 TYR A 296 ? ? 177.10 155.12 3 1 PHE A 302 ? ? -99.61 -74.23 4 1 ALA A 321 ? ? 44.03 -110.02 5 1 GLN A 324 ? ? -122.79 -57.43 6 1 ASN A 373 ? ? 36.61 68.66 7 1 ASN A 374 ? ? 66.76 -17.44 8 1 PHE A 393 ? ? -136.77 -65.51 9 1 THR A 394 ? ? 81.34 125.85 10 1 ILE A 400 ? ? 50.31 73.26 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 317 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 318 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 141.56 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -0.1544 _pdbx_refine_tls.origin_y 12.1520 _pdbx_refine_tls.origin_z 62.2802 _pdbx_refine_tls.T[1][1] 1.1422 _pdbx_refine_tls.T[2][2] 0.6554 _pdbx_refine_tls.T[3][3] 0.6698 _pdbx_refine_tls.T[1][2] -0.5319 _pdbx_refine_tls.T[1][3] 0.4325 _pdbx_refine_tls.T[2][3] -0.1712 _pdbx_refine_tls.L[1][1] 3.3707 _pdbx_refine_tls.L[2][2] 1.3123 _pdbx_refine_tls.L[3][3] 2.7432 _pdbx_refine_tls.L[1][2] -0.9543 _pdbx_refine_tls.L[1][3] 1.4246 _pdbx_refine_tls.L[2][3] 0.7508 _pdbx_refine_tls.S[1][1] 0.3848 _pdbx_refine_tls.S[1][2] 0.0965 _pdbx_refine_tls.S[1][3] 0.1399 _pdbx_refine_tls.S[2][1] -0.0758 _pdbx_refine_tls.S[2][2] 0.1461 _pdbx_refine_tls.S[2][3] 0.0040 _pdbx_refine_tls.S[3][1] -1.1068 _pdbx_refine_tls.S[3][2] 0.6403 _pdbx_refine_tls.S[3][3] -0.2819 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 268 A 406 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 501 A 503 all ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 309 ? A GLY 42 2 1 Y 1 A SER 310 ? A SER 43 3 1 Y 1 A GLY 346 ? A GLY 79 4 1 Y 1 A THR 347 ? A THR 80 5 1 Y 1 A LYS 348 ? A LYS 81 6 1 Y 1 A PHE 349 ? A PHE 82 7 1 Y 1 A ASP 350 ? A ASP 83 8 1 Y 1 A ILE 351 ? A ILE 84 9 1 Y 1 A LYS 352 ? A LYS 85 10 1 Y 1 A ARG 353 ? A ARG 86 11 1 Y 1 A MET 354 ? A MET 87 12 1 Y 1 A VAL 355 ? A VAL 88 13 1 Y 1 A GLU 356 ? A GLU 89 14 1 Y 1 A ASP 357 ? A ASP 90 15 1 Y 1 A SER 358 ? A SER 91 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _atom_sites.entry_id 3VNN _atom_sites.fract_transf_matrix[1][1] 0.025585 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025585 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005066 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_