data_3WA4 # _entry.id 3WA4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WA4 pdb_00003wa4 10.2210/pdb3wa4/pdb RCSB RCSB096077 ? ? WWPDB D_1000096077 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WA4 _pdbx_database_status.recvd_initial_deposition_date 2013-04-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Higo, K.' 1 'Oda, M.' 2 'Ito, N.' 3 # _citation.id primary _citation.title 'High Resolution Crystal Structure of the Grb2 SH2 Domain with a Phosphopeptide Derived from CD28' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e74482 _citation.page_last e74482 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24098653 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0074482 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Higo, K.' 1 ? primary 'Ikura, T.' 2 ? primary 'Oda, M.' 3 ? primary 'Morii, H.' 4 ? primary 'Takahashi, J.' 5 ? primary 'Abe, R.' 6 ? primary 'Ito, N.' 7 ? # _cell.entry_id 3WA4 _cell.length_a 59.010 _cell.length_b 59.010 _cell.length_c 117.090 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WA4 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Growth factor receptor-bound protein 2' 11371.807 1 ? ? 'SH2 domain, UNP resideus 57-152' ? 2 polymer syn 'T-cell-specific surface glycoprotein CD28' 1038.047 1 ? ? 'fragment peptide, UNP residues 190-195' ? 3 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 4 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 5 water nat water 18.015 64 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Adapter protein GRB2, Protein Ash, SH2/SH3 adapter GRB2' 2 TP44 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPEFWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDY HRSTSVSRNQQIFLRDIE ; ;GSPEFWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDY HRSTSVSRNQQIFLRDIE ; A ? 2 'polypeptide(L)' no yes 'SD(PTR)MNMTP' SDYMNMTP B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 PHE n 1 6 TRP n 1 7 PHE n 1 8 PHE n 1 9 GLY n 1 10 LYS n 1 11 ILE n 1 12 PRO n 1 13 ARG n 1 14 ALA n 1 15 LYS n 1 16 ALA n 1 17 GLU n 1 18 GLU n 1 19 MET n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 GLN n 1 24 ARG n 1 25 HIS n 1 26 ASP n 1 27 GLY n 1 28 ALA n 1 29 PHE n 1 30 LEU n 1 31 ILE n 1 32 ARG n 1 33 GLU n 1 34 SER n 1 35 GLU n 1 36 SER n 1 37 ALA n 1 38 PRO n 1 39 GLY n 1 40 ASP n 1 41 PHE n 1 42 SER n 1 43 LEU n 1 44 SER n 1 45 VAL n 1 46 LYS n 1 47 PHE n 1 48 GLY n 1 49 ASN n 1 50 ASP n 1 51 VAL n 1 52 GLN n 1 53 HIS n 1 54 PHE n 1 55 LYS n 1 56 VAL n 1 57 LEU n 1 58 ARG n 1 59 ASP n 1 60 GLY n 1 61 ALA n 1 62 GLY n 1 63 LYS n 1 64 TYR n 1 65 PHE n 1 66 LEU n 1 67 TRP n 1 68 VAL n 1 69 VAL n 1 70 LYS n 1 71 PHE n 1 72 ASN n 1 73 SER n 1 74 LEU n 1 75 ASN n 1 76 GLU n 1 77 LEU n 1 78 VAL n 1 79 ASP n 1 80 TYR n 1 81 HIS n 1 82 ARG n 1 83 SER n 1 84 THR n 1 85 SER n 1 86 VAL n 1 87 SER n 1 88 ARG n 1 89 ASN n 1 90 GLN n 1 91 GLN n 1 92 ILE n 1 93 PHE n 1 94 LEU n 1 95 ARG n 1 96 ASP n 1 97 ILE n 1 98 GLU n 2 1 SER n 2 2 ASP n 2 3 PTR n 2 4 MET n 2 5 ASN n 2 6 MET n 2 7 THR n 2 8 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GRB2, ASH' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GRB2_HUMAN P62993 1 ;WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS VSRNQQIFLRDIE ; 60 ? 2 UNP CD28_HUMAN P10747 2 SDYMNMTP 189 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WA4 A 6 ? 98 ? P62993 60 ? 152 ? 60 152 2 2 3WA4 B 1 ? 8 ? P10747 189 ? 196 ? 189 196 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WA4 GLY A 1 ? UNP P62993 ? ? 'expression tag' 55 1 1 3WA4 SER A 2 ? UNP P62993 ? ? 'expression tag' 56 2 1 3WA4 PRO A 3 ? UNP P62993 ? ? 'expression tag' 57 3 1 3WA4 GLU A 4 ? UNP P62993 ? ? 'expression tag' 58 4 1 3WA4 PHE A 5 ? UNP P62993 ? ? 'expression tag' 59 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3WA4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES, 1.25M sodium acetate, 0.1M cadmium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2009-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 3WA4 _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.35 _reflns.number_obs 26431 _reflns.number_all 26431 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.37 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.498 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 21.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3WA4 _refine.ls_number_reflns_obs 25113 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.54 _refine.ls_d_res_high 1.35 _refine.ls_percent_reflns_obs 96.84 _refine.ls_R_factor_obs 0.17725 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17553 _refine.ls_R_factor_R_free 0.20868 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1317 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 19.004 _refine.aniso_B[1][1] 0.19 _refine.aniso_B[2][2] 0.19 _refine.aniso_B[3][3] -0.61 _refine.aniso_B[1][2] 0.19 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3C7I _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.058 _refine.pdbx_overall_ESU_R_Free 0.056 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 848 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 917 _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 23.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.020 . ? 896 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.000 . ? 842 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.106 . ? 1208 ? 'X-RAY DIFFRACTION' r_angle_other_deg 3.681 . ? 1930 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.815 5.000 ? 106 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 30.170 23.261 ? 46 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.441 15.000 ? 156 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 20.151 15.000 ? 7 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.144 0.200 ? 122 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.014 78.290 ? 1022 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.025 . ? 235 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 15.236 3.000 ? 1738 ? 'X-RAY DIFFRACTION' r_sphericity_free 24.007 5.000 ? 21 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 11.344 5.000 ? 1759 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.350 _refine_ls_shell.d_res_low 1.385 _refine_ls_shell.number_reflns_R_work 1820 _refine_ls_shell.R_factor_R_work 0.155 _refine_ls_shell.percent_reflns_obs 98.16 _refine_ls_shell.R_factor_R_free 0.245 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3WA4 _struct.title 'Grb2 SH2 domain/CD28-derived peptide complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WA4 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'Grb2 SH2 domain, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? LYS A 22 ? PRO A 66 LYS A 76 1 ? 11 HELX_P HELX_P2 2 SER A 73 ? HIS A 81 ? SER A 127 HIS A 135 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ASP 2 C ? ? ? 1_555 B PTR 3 N ? ? B ASP 190 B PTR 191 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale2 covale both ? B PTR 3 C ? ? ? 1_555 B MET 4 N ? ? B PTR 191 B MET 192 1_555 ? ? ? ? ? ? ? 1.323 ? ? metalc1 metalc ? ? A HIS 25 NE2 ? ? ? 1_555 C CD . CD ? ? A HIS 79 A CD 201 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc2 metalc ? ? A GLU 98 OE1 ? ? ? 1_555 C CD . CD ? ? A GLU 152 A CD 201 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc3 metalc ? ? A GLU 98 OE2 ? ? ? 1_555 C CD . CD ? ? A GLU 152 A CD 201 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc4 metalc ? ? C CD . CD ? ? ? 1_555 D ACY . O ? ? A CD 201 A ACY 202 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc5 metalc ? ? C CD . CD ? ? ? 1_555 D ACY . OXT ? ? A CD 201 A ACY 202 1_555 ? ? ? ? ? ? ? 2.358 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 70 ? PHE A 71 ? LYS A 124 PHE A 125 A 2 TYR A 64 ? PHE A 65 ? TYR A 118 PHE A 119 A 3 ASP A 50 ? ARG A 58 ? ASP A 104 ARG A 112 A 4 PHE A 41 ? PHE A 47 ? PHE A 95 PHE A 101 A 5 ALA A 28 ? GLU A 33 ? ALA A 82 GLU A 87 A 6 ARG A 95 ? ASP A 96 ? ARG A 149 ASP A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 71 ? O PHE A 125 N TYR A 64 ? N TYR A 118 A 2 3 O PHE A 65 ? O PHE A 119 N LEU A 57 ? N LEU A 111 A 3 4 O PHE A 54 ? O PHE A 108 N LEU A 43 ? N LEU A 97 A 4 5 O LYS A 46 ? O LYS A 100 N ALA A 28 ? N ALA A 82 A 5 6 N PHE A 29 ? N PHE A 83 O ARG A 95 ? O ARG A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 201 ? 4 'BINDING SITE FOR RESIDUE CD A 201' AC2 Software A ACY 202 ? 7 'BINDING SITE FOR RESIDUE ACY A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 25 ? HIS A 79 . ? 1_555 ? 2 AC1 4 ASP A 40 ? ASP A 94 . ? 8_665 ? 3 AC1 4 GLU A 98 ? GLU A 152 . ? 1_555 ? 4 AC1 4 ACY D . ? ACY A 202 . ? 1_555 ? 5 AC2 7 ARG A 24 ? ARG A 78 . ? 1_555 ? 6 AC2 7 HIS A 25 ? HIS A 79 . ? 1_555 ? 7 AC2 7 ASP A 40 ? ASP A 94 . ? 8_665 ? 8 AC2 7 ARG A 58 ? ARG A 112 . ? 8_665 ? 9 AC2 7 GLU A 98 ? GLU A 152 . ? 1_555 ? 10 AC2 7 CD C . ? CD A 201 . ? 1_555 ? 11 AC2 7 HOH E . ? HOH A 336 . ? 8_665 ? # _database_PDB_matrix.entry_id 3WA4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WA4 _atom_sites.fract_transf_matrix[1][1] 0.016946 _atom_sites.fract_transf_matrix[1][2] 0.009784 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019568 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008540 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 55 ? ? ? A . n A 1 2 SER 2 56 ? ? ? A . n A 1 3 PRO 3 57 57 PRO PRO A . n A 1 4 GLU 4 58 58 GLU GLU A . n A 1 5 PHE 5 59 59 PHE PHE A . n A 1 6 TRP 6 60 60 TRP TRP A . n A 1 7 PHE 7 61 61 PHE PHE A . n A 1 8 PHE 8 62 62 PHE PHE A . n A 1 9 GLY 9 63 63 GLY GLY A . n A 1 10 LYS 10 64 64 LYS LYS A . n A 1 11 ILE 11 65 65 ILE ILE A . n A 1 12 PRO 12 66 66 PRO PRO A . n A 1 13 ARG 13 67 67 ARG ARG A . n A 1 14 ALA 14 68 68 ALA ALA A . n A 1 15 LYS 15 69 69 LYS LYS A . n A 1 16 ALA 16 70 70 ALA ALA A . n A 1 17 GLU 17 71 71 GLU GLU A . n A 1 18 GLU 18 72 72 GLU GLU A . n A 1 19 MET 19 73 73 MET MET A . n A 1 20 LEU 20 74 74 LEU LEU A . n A 1 21 SER 21 75 75 SER SER A . n A 1 22 LYS 22 76 76 LYS LYS A . n A 1 23 GLN 23 77 77 GLN GLN A . n A 1 24 ARG 24 78 78 ARG ARG A . n A 1 25 HIS 25 79 79 HIS HIS A . n A 1 26 ASP 26 80 80 ASP ASP A . n A 1 27 GLY 27 81 81 GLY GLY A . n A 1 28 ALA 28 82 82 ALA ALA A . n A 1 29 PHE 29 83 83 PHE PHE A . n A 1 30 LEU 30 84 84 LEU LEU A . n A 1 31 ILE 31 85 85 ILE ILE A . n A 1 32 ARG 32 86 86 ARG ARG A . n A 1 33 GLU 33 87 87 GLU GLU A . n A 1 34 SER 34 88 88 SER SER A . n A 1 35 GLU 35 89 89 GLU GLU A . n A 1 36 SER 36 90 90 SER SER A . n A 1 37 ALA 37 91 91 ALA ALA A . n A 1 38 PRO 38 92 92 PRO PRO A . n A 1 39 GLY 39 93 93 GLY GLY A . n A 1 40 ASP 40 94 94 ASP ASP A . n A 1 41 PHE 41 95 95 PHE PHE A . n A 1 42 SER 42 96 96 SER SER A . n A 1 43 LEU 43 97 97 LEU LEU A . n A 1 44 SER 44 98 98 SER SER A . n A 1 45 VAL 45 99 99 VAL VAL A . n A 1 46 LYS 46 100 100 LYS LYS A . n A 1 47 PHE 47 101 101 PHE PHE A . n A 1 48 GLY 48 102 102 GLY GLY A . n A 1 49 ASN 49 103 103 ASN ASN A . n A 1 50 ASP 50 104 104 ASP ASP A . n A 1 51 VAL 51 105 105 VAL VAL A . n A 1 52 GLN 52 106 106 GLN GLN A . n A 1 53 HIS 53 107 107 HIS HIS A . n A 1 54 PHE 54 108 108 PHE PHE A . n A 1 55 LYS 55 109 109 LYS LYS A . n A 1 56 VAL 56 110 110 VAL VAL A . n A 1 57 LEU 57 111 111 LEU LEU A . n A 1 58 ARG 58 112 112 ARG ARG A . n A 1 59 ASP 59 113 113 ASP ASP A . n A 1 60 GLY 60 114 114 GLY GLY A . n A 1 61 ALA 61 115 115 ALA ALA A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 LYS 63 117 117 LYS LYS A . n A 1 64 TYR 64 118 118 TYR TYR A . n A 1 65 PHE 65 119 119 PHE PHE A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 TRP 67 121 121 TRP TRP A . n A 1 68 VAL 68 122 122 VAL VAL A . n A 1 69 VAL 69 123 123 VAL VAL A . n A 1 70 LYS 70 124 124 LYS LYS A . n A 1 71 PHE 71 125 125 PHE PHE A . n A 1 72 ASN 72 126 126 ASN ASN A . n A 1 73 SER 73 127 127 SER SER A . n A 1 74 LEU 74 128 128 LEU LEU A . n A 1 75 ASN 75 129 129 ASN ASN A . n A 1 76 GLU 76 130 130 GLU GLU A . n A 1 77 LEU 77 131 131 LEU LEU A . n A 1 78 VAL 78 132 132 VAL VAL A . n A 1 79 ASP 79 133 133 ASP ASP A . n A 1 80 TYR 80 134 134 TYR TYR A . n A 1 81 HIS 81 135 135 HIS HIS A . n A 1 82 ARG 82 136 136 ARG ARG A . n A 1 83 SER 83 137 137 SER SER A . n A 1 84 THR 84 138 138 THR THR A . n A 1 85 SER 85 139 139 SER SER A . n A 1 86 VAL 86 140 140 VAL VAL A . n A 1 87 SER 87 141 141 SER SER A . n A 1 88 ARG 88 142 142 ARG ARG A . n A 1 89 ASN 89 143 143 ASN ASN A . n A 1 90 GLN 90 144 144 GLN GLN A . n A 1 91 GLN 91 145 145 GLN GLN A . n A 1 92 ILE 92 146 146 ILE ILE A . n A 1 93 PHE 93 147 147 PHE PHE A . n A 1 94 LEU 94 148 148 LEU LEU A . n A 1 95 ARG 95 149 149 ARG ARG A . n A 1 96 ASP 96 150 150 ASP ASP A . n A 1 97 ILE 97 151 151 ILE ILE A . n A 1 98 GLU 98 152 152 GLU GLU A . n B 2 1 SER 1 189 ? ? ? B . n B 2 2 ASP 2 190 190 ASP ASP B . n B 2 3 PTR 3 191 191 PTR PTR B . n B 2 4 MET 4 192 192 MET MET B . n B 2 5 ASN 5 193 193 ASN ASN B . n B 2 6 MET 6 194 194 MET MET B . n B 2 7 THR 7 195 195 THR THR B . n B 2 8 PRO 8 196 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CD 1 201 1 CD CD A . D 4 ACY 1 202 501 ACY ACY A . E 5 HOH 1 301 2 HOH HOH A . E 5 HOH 2 302 3 HOH HOH A . E 5 HOH 3 303 4 HOH HOH A . E 5 HOH 4 304 5 HOH HOH A . E 5 HOH 5 305 6 HOH HOH A . E 5 HOH 6 306 7 HOH HOH A . E 5 HOH 7 307 8 HOH HOH A . E 5 HOH 8 308 9 HOH HOH A . E 5 HOH 9 309 10 HOH HOH A . E 5 HOH 10 310 11 HOH HOH A . E 5 HOH 11 311 12 HOH HOH A . E 5 HOH 12 312 13 HOH HOH A . E 5 HOH 13 313 14 HOH HOH A . E 5 HOH 14 314 15 HOH HOH A . E 5 HOH 15 315 16 HOH HOH A . E 5 HOH 16 316 17 HOH HOH A . E 5 HOH 17 317 18 HOH HOH A . E 5 HOH 18 318 19 HOH HOH A . E 5 HOH 19 319 20 HOH HOH A . E 5 HOH 20 320 21 HOH HOH A . E 5 HOH 21 321 22 HOH HOH A . E 5 HOH 22 322 23 HOH HOH A . E 5 HOH 23 323 25 HOH HOH A . E 5 HOH 24 324 26 HOH HOH A . E 5 HOH 25 325 27 HOH HOH A . E 5 HOH 26 326 28 HOH HOH A . E 5 HOH 27 327 29 HOH HOH A . E 5 HOH 28 328 30 HOH HOH A . E 5 HOH 29 329 31 HOH HOH A . E 5 HOH 30 330 32 HOH HOH A . E 5 HOH 31 331 33 HOH HOH A . E 5 HOH 32 332 34 HOH HOH A . E 5 HOH 33 333 35 HOH HOH A . E 5 HOH 34 334 36 HOH HOH A . E 5 HOH 35 335 37 HOH HOH A . E 5 HOH 36 336 38 HOH HOH A . E 5 HOH 37 337 39 HOH HOH A . E 5 HOH 38 338 40 HOH HOH A . E 5 HOH 39 339 41 HOH HOH A . E 5 HOH 40 340 42 HOH HOH A . E 5 HOH 41 341 43 HOH HOH A . E 5 HOH 42 342 44 HOH HOH A . E 5 HOH 43 343 45 HOH HOH A . E 5 HOH 44 344 46 HOH HOH A . E 5 HOH 45 345 47 HOH HOH A . E 5 HOH 46 346 48 HOH HOH A . E 5 HOH 47 347 49 HOH HOH A . E 5 HOH 48 348 50 HOH HOH A . E 5 HOH 49 349 51 HOH HOH A . E 5 HOH 50 350 52 HOH HOH A . E 5 HOH 51 351 53 HOH HOH A . E 5 HOH 52 352 54 HOH HOH A . E 5 HOH 53 353 55 HOH HOH A . E 5 HOH 54 354 56 HOH HOH A . E 5 HOH 55 355 57 HOH HOH A . E 5 HOH 56 356 58 HOH HOH A . E 5 HOH 57 357 59 HOH HOH A . E 5 HOH 58 358 61 HOH HOH A . E 5 HOH 59 359 62 HOH HOH A . E 5 HOH 60 360 63 HOH HOH A . E 5 HOH 61 361 64 HOH HOH A . E 5 HOH 62 362 65 HOH HOH A . E 5 HOH 63 363 66 HOH HOH A . F 5 HOH 1 201 24 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 191 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E 2 1 B,F 3 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 900 ? 3 MORE -8 ? 3 'SSA (A^2)' 5790 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 25 ? A HIS 79 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE1 ? A GLU 98 ? A GLU 152 ? 1_555 103.4 ? 2 NE2 ? A HIS 25 ? A HIS 79 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 98 ? A GLU 152 ? 1_555 86.4 ? 3 OE1 ? A GLU 98 ? A GLU 152 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 98 ? A GLU 152 ? 1_555 49.1 ? 4 NE2 ? A HIS 25 ? A HIS 79 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 O ? D ACY . ? A ACY 202 ? 1_555 91.2 ? 5 OE1 ? A GLU 98 ? A GLU 152 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 O ? D ACY . ? A ACY 202 ? 1_555 127.5 ? 6 OE2 ? A GLU 98 ? A GLU 152 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 O ? D ACY . ? A ACY 202 ? 1_555 175.0 ? 7 NE2 ? A HIS 25 ? A HIS 79 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OXT ? D ACY . ? A ACY 202 ? 1_555 91.6 ? 8 OE1 ? A GLU 98 ? A GLU 152 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OXT ? D ACY . ? A ACY 202 ? 1_555 79.1 ? 9 OE2 ? A GLU 98 ? A GLU 152 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OXT ? D ACY . ? A ACY 202 ? 1_555 125.6 ? 10 O ? D ACY . ? A ACY 202 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OXT ? D ACY . ? A ACY 202 ? 1_555 50.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-26 2 'Structure model' 1 1 2023-11-08 3 'Structure model' 1 2 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_ref_seq_dif 8 2 'Structure model' struct_site 9 3 'Structure model' chem_comp_atom 10 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 2 'Structure model' '_struct_ref_seq_dif.details' 30 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 33 3 'Structure model' '_chem_comp_atom.atom_id' 34 3 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 67 ? ? CZ A ARG 67 ? ? NH1 A ARG 67 ? ? 124.26 120.30 3.96 0.50 N 2 1 NE A ARG 142 ? ? CZ A ARG 142 ? ? NH1 A ARG 142 ? ? 126.30 120.30 6.00 0.50 N 3 1 NE A ARG 142 ? ? CZ A ARG 142 ? ? NH2 A ARG 142 ? ? 116.03 120.30 -4.27 0.50 N 4 1 CG B MET 194 ? ? SD B MET 194 ? ? CE B MET 194 ? ? 109.89 100.20 9.69 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 64 ? ? -88.74 46.63 2 1 TRP A 121 ? ? -130.83 -81.62 3 1 TRP A 121 ? ? -130.83 -87.54 4 1 VAL A 122 ? A -135.67 -33.61 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 58 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -13.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASP 190 ? CG ? B ASP 2 CG 2 1 Y 1 B ASP 190 ? OD1 ? B ASP 2 OD1 3 1 Y 1 B ASP 190 ? OD2 ? B ASP 2 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 55 ? A GLY 1 2 1 Y 1 A SER 56 ? A SER 2 3 1 Y 1 B SER 189 ? B SER 1 4 1 Y 1 B PRO 196 ? B PRO 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 ASN N N N N 49 ASN CA C N S 50 ASN C C N N 51 ASN O O N N 52 ASN CB C N N 53 ASN CG C N N 54 ASN OD1 O N N 55 ASN ND2 N N N 56 ASN OXT O N N 57 ASN H H N N 58 ASN H2 H N N 59 ASN HA H N N 60 ASN HB2 H N N 61 ASN HB3 H N N 62 ASN HD21 H N N 63 ASN HD22 H N N 64 ASN HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CD CD CD N N 82 GLN N N N N 83 GLN CA C N S 84 GLN C C N N 85 GLN O O N N 86 GLN CB C N N 87 GLN CG C N N 88 GLN CD C N N 89 GLN OE1 O N N 90 GLN NE2 N N N 91 GLN OXT O N N 92 GLN H H N N 93 GLN H2 H N N 94 GLN HA H N N 95 GLN HB2 H N N 96 GLN HB3 H N N 97 GLN HG2 H N N 98 GLN HG3 H N N 99 GLN HE21 H N N 100 GLN HE22 H N N 101 GLN HXT H N N 102 GLU N N N N 103 GLU CA C N S 104 GLU C C N N 105 GLU O O N N 106 GLU CB C N N 107 GLU CG C N N 108 GLU CD C N N 109 GLU OE1 O N N 110 GLU OE2 O N N 111 GLU OXT O N N 112 GLU H H N N 113 GLU H2 H N N 114 GLU HA H N N 115 GLU HB2 H N N 116 GLU HB3 H N N 117 GLU HG2 H N N 118 GLU HG3 H N N 119 GLU HE2 H N N 120 GLU HXT H N N 121 GLY N N N N 122 GLY CA C N N 123 GLY C C N N 124 GLY O O N N 125 GLY OXT O N N 126 GLY H H N N 127 GLY H2 H N N 128 GLY HA2 H N N 129 GLY HA3 H N N 130 GLY HXT H N N 131 HIS N N N N 132 HIS CA C N S 133 HIS C C N N 134 HIS O O N N 135 HIS CB C N N 136 HIS CG C Y N 137 HIS ND1 N Y N 138 HIS CD2 C Y N 139 HIS CE1 C Y N 140 HIS NE2 N Y N 141 HIS OXT O N N 142 HIS H H N N 143 HIS H2 H N N 144 HIS HA H N N 145 HIS HB2 H N N 146 HIS HB3 H N N 147 HIS HD1 H N N 148 HIS HD2 H N N 149 HIS HE1 H N N 150 HIS HE2 H N N 151 HIS HXT H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 ILE N N N N 156 ILE CA C N S 157 ILE C C N N 158 ILE O O N N 159 ILE CB C N S 160 ILE CG1 C N N 161 ILE CG2 C N N 162 ILE CD1 C N N 163 ILE OXT O N N 164 ILE H H N N 165 ILE H2 H N N 166 ILE HA H N N 167 ILE HB H N N 168 ILE HG12 H N N 169 ILE HG13 H N N 170 ILE HG21 H N N 171 ILE HG22 H N N 172 ILE HG23 H N N 173 ILE HD11 H N N 174 ILE HD12 H N N 175 ILE HD13 H N N 176 ILE HXT H N N 177 LEU N N N N 178 LEU CA C N S 179 LEU C C N N 180 LEU O O N N 181 LEU CB C N N 182 LEU CG C N N 183 LEU CD1 C N N 184 LEU CD2 C N N 185 LEU OXT O N N 186 LEU H H N N 187 LEU H2 H N N 188 LEU HA H N N 189 LEU HB2 H N N 190 LEU HB3 H N N 191 LEU HG H N N 192 LEU HD11 H N N 193 LEU HD12 H N N 194 LEU HD13 H N N 195 LEU HD21 H N N 196 LEU HD22 H N N 197 LEU HD23 H N N 198 LEU HXT H N N 199 LYS N N N N 200 LYS CA C N S 201 LYS C C N N 202 LYS O O N N 203 LYS CB C N N 204 LYS CG C N N 205 LYS CD C N N 206 LYS CE C N N 207 LYS NZ N N N 208 LYS OXT O N N 209 LYS H H N N 210 LYS H2 H N N 211 LYS HA H N N 212 LYS HB2 H N N 213 LYS HB3 H N N 214 LYS HG2 H N N 215 LYS HG3 H N N 216 LYS HD2 H N N 217 LYS HD3 H N N 218 LYS HE2 H N N 219 LYS HE3 H N N 220 LYS HZ1 H N N 221 LYS HZ2 H N N 222 LYS HZ3 H N N 223 LYS HXT H N N 224 MET N N N N 225 MET CA C N S 226 MET C C N N 227 MET O O N N 228 MET CB C N N 229 MET CG C N N 230 MET SD S N N 231 MET CE C N N 232 MET OXT O N N 233 MET H H N N 234 MET H2 H N N 235 MET HA H N N 236 MET HB2 H N N 237 MET HB3 H N N 238 MET HG2 H N N 239 MET HG3 H N N 240 MET HE1 H N N 241 MET HE2 H N N 242 MET HE3 H N N 243 MET HXT H N N 244 PHE N N N N 245 PHE CA C N S 246 PHE C C N N 247 PHE O O N N 248 PHE CB C N N 249 PHE CG C Y N 250 PHE CD1 C Y N 251 PHE CD2 C Y N 252 PHE CE1 C Y N 253 PHE CE2 C Y N 254 PHE CZ C Y N 255 PHE OXT O N N 256 PHE H H N N 257 PHE H2 H N N 258 PHE HA H N N 259 PHE HB2 H N N 260 PHE HB3 H N N 261 PHE HD1 H N N 262 PHE HD2 H N N 263 PHE HE1 H N N 264 PHE HE2 H N N 265 PHE HZ H N N 266 PHE HXT H N N 267 PRO N N N N 268 PRO CA C N S 269 PRO C C N N 270 PRO O O N N 271 PRO CB C N N 272 PRO CG C N N 273 PRO CD C N N 274 PRO OXT O N N 275 PRO H H N N 276 PRO HA H N N 277 PRO HB2 H N N 278 PRO HB3 H N N 279 PRO HG2 H N N 280 PRO HG3 H N N 281 PRO HD2 H N N 282 PRO HD3 H N N 283 PRO HXT H N N 284 PTR N N N N 285 PTR CA C N S 286 PTR C C N N 287 PTR O O N N 288 PTR OXT O N N 289 PTR CB C N N 290 PTR CG C Y N 291 PTR CD1 C Y N 292 PTR CD2 C Y N 293 PTR CE1 C Y N 294 PTR CE2 C Y N 295 PTR CZ C Y N 296 PTR OH O N N 297 PTR P P N N 298 PTR O1P O N N 299 PTR O2P O N N 300 PTR O3P O N N 301 PTR H H N N 302 PTR H2 H N N 303 PTR HA H N N 304 PTR HXT H N N 305 PTR HB2 H N N 306 PTR HB3 H N N 307 PTR HD1 H N N 308 PTR HD2 H N N 309 PTR HE1 H N N 310 PTR HE2 H N N 311 PTR HO2P H N N 312 PTR HO3P H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TRP N N N N 345 TRP CA C N S 346 TRP C C N N 347 TRP O O N N 348 TRP CB C N N 349 TRP CG C Y N 350 TRP CD1 C Y N 351 TRP CD2 C Y N 352 TRP NE1 N Y N 353 TRP CE2 C Y N 354 TRP CE3 C Y N 355 TRP CZ2 C Y N 356 TRP CZ3 C Y N 357 TRP CH2 C Y N 358 TRP OXT O N N 359 TRP H H N N 360 TRP H2 H N N 361 TRP HA H N N 362 TRP HB2 H N N 363 TRP HB3 H N N 364 TRP HD1 H N N 365 TRP HE1 H N N 366 TRP HE3 H N N 367 TRP HZ2 H N N 368 TRP HZ3 H N N 369 TRP HH2 H N N 370 TRP HXT H N N 371 TYR N N N N 372 TYR CA C N S 373 TYR C C N N 374 TYR O O N N 375 TYR CB C N N 376 TYR CG C Y N 377 TYR CD1 C Y N 378 TYR CD2 C Y N 379 TYR CE1 C Y N 380 TYR CE2 C Y N 381 TYR CZ C Y N 382 TYR OH O N N 383 TYR OXT O N N 384 TYR H H N N 385 TYR H2 H N N 386 TYR HA H N N 387 TYR HB2 H N N 388 TYR HB3 H N N 389 TYR HD1 H N N 390 TYR HD2 H N N 391 TYR HE1 H N N 392 TYR HE2 H N N 393 TYR HH H N N 394 TYR HXT H N N 395 VAL N N N N 396 VAL CA C N S 397 VAL C C N N 398 VAL O O N N 399 VAL CB C N N 400 VAL CG1 C N N 401 VAL CG2 C N N 402 VAL OXT O N N 403 VAL H H N N 404 VAL H2 H N N 405 VAL HA H N N 406 VAL HB H N N 407 VAL HG11 H N N 408 VAL HG12 H N N 409 VAL HG13 H N N 410 VAL HG21 H N N 411 VAL HG22 H N N 412 VAL HG23 H N N 413 VAL HXT H N N 414 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 ASN N CA sing N N 46 ASN N H sing N N 47 ASN N H2 sing N N 48 ASN CA C sing N N 49 ASN CA CB sing N N 50 ASN CA HA sing N N 51 ASN C O doub N N 52 ASN C OXT sing N N 53 ASN CB CG sing N N 54 ASN CB HB2 sing N N 55 ASN CB HB3 sing N N 56 ASN CG OD1 doub N N 57 ASN CG ND2 sing N N 58 ASN ND2 HD21 sing N N 59 ASN ND2 HD22 sing N N 60 ASN OXT HXT sing N N 61 ASP N CA sing N N 62 ASP N H sing N N 63 ASP N H2 sing N N 64 ASP CA C sing N N 65 ASP CA CB sing N N 66 ASP CA HA sing N N 67 ASP C O doub N N 68 ASP C OXT sing N N 69 ASP CB CG sing N N 70 ASP CB HB2 sing N N 71 ASP CB HB3 sing N N 72 ASP CG OD1 doub N N 73 ASP CG OD2 sing N N 74 ASP OD2 HD2 sing N N 75 ASP OXT HXT sing N N 76 GLN N CA sing N N 77 GLN N H sing N N 78 GLN N H2 sing N N 79 GLN CA C sing N N 80 GLN CA CB sing N N 81 GLN CA HA sing N N 82 GLN C O doub N N 83 GLN C OXT sing N N 84 GLN CB CG sing N N 85 GLN CB HB2 sing N N 86 GLN CB HB3 sing N N 87 GLN CG CD sing N N 88 GLN CG HG2 sing N N 89 GLN CG HG3 sing N N 90 GLN CD OE1 doub N N 91 GLN CD NE2 sing N N 92 GLN NE2 HE21 sing N N 93 GLN NE2 HE22 sing N N 94 GLN OXT HXT sing N N 95 GLU N CA sing N N 96 GLU N H sing N N 97 GLU N H2 sing N N 98 GLU CA C sing N N 99 GLU CA CB sing N N 100 GLU CA HA sing N N 101 GLU C O doub N N 102 GLU C OXT sing N N 103 GLU CB CG sing N N 104 GLU CB HB2 sing N N 105 GLU CB HB3 sing N N 106 GLU CG CD sing N N 107 GLU CG HG2 sing N N 108 GLU CG HG3 sing N N 109 GLU CD OE1 doub N N 110 GLU CD OE2 sing N N 111 GLU OE2 HE2 sing N N 112 GLU OXT HXT sing N N 113 GLY N CA sing N N 114 GLY N H sing N N 115 GLY N H2 sing N N 116 GLY CA C sing N N 117 GLY CA HA2 sing N N 118 GLY CA HA3 sing N N 119 GLY C O doub N N 120 GLY C OXT sing N N 121 GLY OXT HXT sing N N 122 HIS N CA sing N N 123 HIS N H sing N N 124 HIS N H2 sing N N 125 HIS CA C sing N N 126 HIS CA CB sing N N 127 HIS CA HA sing N N 128 HIS C O doub N N 129 HIS C OXT sing N N 130 HIS CB CG sing N N 131 HIS CB HB2 sing N N 132 HIS CB HB3 sing N N 133 HIS CG ND1 sing Y N 134 HIS CG CD2 doub Y N 135 HIS ND1 CE1 doub Y N 136 HIS ND1 HD1 sing N N 137 HIS CD2 NE2 sing Y N 138 HIS CD2 HD2 sing N N 139 HIS CE1 NE2 sing Y N 140 HIS CE1 HE1 sing N N 141 HIS NE2 HE2 sing N N 142 HIS OXT HXT sing N N 143 HOH O H1 sing N N 144 HOH O H2 sing N N 145 ILE N CA sing N N 146 ILE N H sing N N 147 ILE N H2 sing N N 148 ILE CA C sing N N 149 ILE CA CB sing N N 150 ILE CA HA sing N N 151 ILE C O doub N N 152 ILE C OXT sing N N 153 ILE CB CG1 sing N N 154 ILE CB CG2 sing N N 155 ILE CB HB sing N N 156 ILE CG1 CD1 sing N N 157 ILE CG1 HG12 sing N N 158 ILE CG1 HG13 sing N N 159 ILE CG2 HG21 sing N N 160 ILE CG2 HG22 sing N N 161 ILE CG2 HG23 sing N N 162 ILE CD1 HD11 sing N N 163 ILE CD1 HD12 sing N N 164 ILE CD1 HD13 sing N N 165 ILE OXT HXT sing N N 166 LEU N CA sing N N 167 LEU N H sing N N 168 LEU N H2 sing N N 169 LEU CA C sing N N 170 LEU CA CB sing N N 171 LEU CA HA sing N N 172 LEU C O doub N N 173 LEU C OXT sing N N 174 LEU CB CG sing N N 175 LEU CB HB2 sing N N 176 LEU CB HB3 sing N N 177 LEU CG CD1 sing N N 178 LEU CG CD2 sing N N 179 LEU CG HG sing N N 180 LEU CD1 HD11 sing N N 181 LEU CD1 HD12 sing N N 182 LEU CD1 HD13 sing N N 183 LEU CD2 HD21 sing N N 184 LEU CD2 HD22 sing N N 185 LEU CD2 HD23 sing N N 186 LEU OXT HXT sing N N 187 LYS N CA sing N N 188 LYS N H sing N N 189 LYS N H2 sing N N 190 LYS CA C sing N N 191 LYS CA CB sing N N 192 LYS CA HA sing N N 193 LYS C O doub N N 194 LYS C OXT sing N N 195 LYS CB CG sing N N 196 LYS CB HB2 sing N N 197 LYS CB HB3 sing N N 198 LYS CG CD sing N N 199 LYS CG HG2 sing N N 200 LYS CG HG3 sing N N 201 LYS CD CE sing N N 202 LYS CD HD2 sing N N 203 LYS CD HD3 sing N N 204 LYS CE NZ sing N N 205 LYS CE HE2 sing N N 206 LYS CE HE3 sing N N 207 LYS NZ HZ1 sing N N 208 LYS NZ HZ2 sing N N 209 LYS NZ HZ3 sing N N 210 LYS OXT HXT sing N N 211 MET N CA sing N N 212 MET N H sing N N 213 MET N H2 sing N N 214 MET CA C sing N N 215 MET CA CB sing N N 216 MET CA HA sing N N 217 MET C O doub N N 218 MET C OXT sing N N 219 MET CB CG sing N N 220 MET CB HB2 sing N N 221 MET CB HB3 sing N N 222 MET CG SD sing N N 223 MET CG HG2 sing N N 224 MET CG HG3 sing N N 225 MET SD CE sing N N 226 MET CE HE1 sing N N 227 MET CE HE2 sing N N 228 MET CE HE3 sing N N 229 MET OXT HXT sing N N 230 PHE N CA sing N N 231 PHE N H sing N N 232 PHE N H2 sing N N 233 PHE CA C sing N N 234 PHE CA CB sing N N 235 PHE CA HA sing N N 236 PHE C O doub N N 237 PHE C OXT sing N N 238 PHE CB CG sing N N 239 PHE CB HB2 sing N N 240 PHE CB HB3 sing N N 241 PHE CG CD1 doub Y N 242 PHE CG CD2 sing Y N 243 PHE CD1 CE1 sing Y N 244 PHE CD1 HD1 sing N N 245 PHE CD2 CE2 doub Y N 246 PHE CD2 HD2 sing N N 247 PHE CE1 CZ doub Y N 248 PHE CE1 HE1 sing N N 249 PHE CE2 CZ sing Y N 250 PHE CE2 HE2 sing N N 251 PHE CZ HZ sing N N 252 PHE OXT HXT sing N N 253 PRO N CA sing N N 254 PRO N CD sing N N 255 PRO N H sing N N 256 PRO CA C sing N N 257 PRO CA CB sing N N 258 PRO CA HA sing N N 259 PRO C O doub N N 260 PRO C OXT sing N N 261 PRO CB CG sing N N 262 PRO CB HB2 sing N N 263 PRO CB HB3 sing N N 264 PRO CG CD sing N N 265 PRO CG HG2 sing N N 266 PRO CG HG3 sing N N 267 PRO CD HD2 sing N N 268 PRO CD HD3 sing N N 269 PRO OXT HXT sing N N 270 PTR N CA sing N N 271 PTR N H sing N N 272 PTR N H2 sing N N 273 PTR CA C sing N N 274 PTR CA CB sing N N 275 PTR CA HA sing N N 276 PTR C O doub N N 277 PTR C OXT sing N N 278 PTR OXT HXT sing N N 279 PTR CB CG sing N N 280 PTR CB HB2 sing N N 281 PTR CB HB3 sing N N 282 PTR CG CD1 doub Y N 283 PTR CG CD2 sing Y N 284 PTR CD1 CE1 sing Y N 285 PTR CD1 HD1 sing N N 286 PTR CD2 CE2 doub Y N 287 PTR CD2 HD2 sing N N 288 PTR CE1 CZ doub Y N 289 PTR CE1 HE1 sing N N 290 PTR CE2 CZ sing Y N 291 PTR CE2 HE2 sing N N 292 PTR CZ OH sing N N 293 PTR OH P sing N N 294 PTR P O1P doub N N 295 PTR P O2P sing N N 296 PTR P O3P sing N N 297 PTR O2P HO2P sing N N 298 PTR O3P HO3P sing N N 299 SER N CA sing N N 300 SER N H sing N N 301 SER N H2 sing N N 302 SER CA C sing N N 303 SER CA CB sing N N 304 SER CA HA sing N N 305 SER C O doub N N 306 SER C OXT sing N N 307 SER CB OG sing N N 308 SER CB HB2 sing N N 309 SER CB HB3 sing N N 310 SER OG HG sing N N 311 SER OXT HXT sing N N 312 THR N CA sing N N 313 THR N H sing N N 314 THR N H2 sing N N 315 THR CA C sing N N 316 THR CA CB sing N N 317 THR CA HA sing N N 318 THR C O doub N N 319 THR C OXT sing N N 320 THR CB OG1 sing N N 321 THR CB CG2 sing N N 322 THR CB HB sing N N 323 THR OG1 HG1 sing N N 324 THR CG2 HG21 sing N N 325 THR CG2 HG22 sing N N 326 THR CG2 HG23 sing N N 327 THR OXT HXT sing N N 328 TRP N CA sing N N 329 TRP N H sing N N 330 TRP N H2 sing N N 331 TRP CA C sing N N 332 TRP CA CB sing N N 333 TRP CA HA sing N N 334 TRP C O doub N N 335 TRP C OXT sing N N 336 TRP CB CG sing N N 337 TRP CB HB2 sing N N 338 TRP CB HB3 sing N N 339 TRP CG CD1 doub Y N 340 TRP CG CD2 sing Y N 341 TRP CD1 NE1 sing Y N 342 TRP CD1 HD1 sing N N 343 TRP CD2 CE2 doub Y N 344 TRP CD2 CE3 sing Y N 345 TRP NE1 CE2 sing Y N 346 TRP NE1 HE1 sing N N 347 TRP CE2 CZ2 sing Y N 348 TRP CE3 CZ3 doub Y N 349 TRP CE3 HE3 sing N N 350 TRP CZ2 CH2 doub Y N 351 TRP CZ2 HZ2 sing N N 352 TRP CZ3 CH2 sing Y N 353 TRP CZ3 HZ3 sing N N 354 TRP CH2 HH2 sing N N 355 TRP OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CADMIUM ION' CD 4 'ACETIC ACID' ACY 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3C7I _pdbx_initial_refinement_model.details ? #