data_3ZGP # _entry.id 3ZGP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZGP pdb_00003zgp 10.2210/pdb3zgp/pdb PDBE EBI-55175 ? ? WWPDB D_1290055175 ? ? BMRB 18911 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZG4 unspecified 'NMR STRUCTURE OF THE CATALYTIC DOMAIN FROM E. FAECIUM L,D-TRANSPEPTIDASE' BMRB 18911 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZGP _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lecoq, L.' 1 ? 'Triboulet, S.' 2 ? 'Dubee, V.' 3 ? 'Bougault, C.' 4 ? 'Hugonnet, J.E.' 5 ? 'Arthur, M.' 6 ? 'Simorre, J.P.' 7 ? # _citation.id primary _citation.title 'The Structure of Enterococcus Faecium L,D---Transpeptidase Acylated by Ertapenem Provides Insight Into the Inactivation Mechanism.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 8 _citation.page_first 1140 _citation.page_last 1146 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23574509 _citation.pdbx_database_id_DOI 10.1021/cb4001603 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lecoq, L.' 1 ? primary 'Triboulet, S.' 2 ? primary 'Dubee, V.' 3 ? primary 'Bougault, C.' 4 ? primary 'Hugonnet, J.E.' 5 ? primary 'Arthur, M.' 6 ? primary 'Simorre, J.P.' 7 ? # _cell.entry_id 3ZGP _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZGP _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ERFK/YBIS/YCFS/YNHG 14572.148 1 2.3.2.12 ? 'CATALYTIC DOMAIN, RESIDUES 341-466' 'ERTAPENEM ANTIBIOTIC IS COVALENTLY LINKED TO THE CYSTEINE OF THE ENZYME.' 2 non-polymer syn ;(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid ; 477.531 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LDTFM-ERTAPENEM # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDWTG VGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDWTG VGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 GLU n 1 5 ASP n 1 6 THR n 1 7 TYR n 1 8 ILE n 1 9 GLU n 1 10 VAL n 1 11 ASP n 1 12 LEU n 1 13 GLU n 1 14 ASN n 1 15 GLN n 1 16 HIS n 1 17 MET n 1 18 TRP n 1 19 TYR n 1 20 TYR n 1 21 LYS n 1 22 ASP n 1 23 GLY n 1 24 LYS n 1 25 VAL n 1 26 ALA n 1 27 LEU n 1 28 GLU n 1 29 THR n 1 30 ASP n 1 31 ILE n 1 32 VAL n 1 33 SER n 1 34 GLY n 1 35 LYS n 1 36 PRO n 1 37 THR n 1 38 THR n 1 39 PRO n 1 40 THR n 1 41 PRO n 1 42 ALA n 1 43 GLY n 1 44 VAL n 1 45 PHE n 1 46 TYR n 1 47 VAL n 1 48 TRP n 1 49 ASN n 1 50 LYS n 1 51 GLU n 1 52 GLU n 1 53 ASP n 1 54 ALA n 1 55 THR n 1 56 LEU n 1 57 LYS n 1 58 GLY n 1 59 THR n 1 60 ASN n 1 61 ASP n 1 62 ASP n 1 63 GLY n 1 64 THR n 1 65 PRO n 1 66 TYR n 1 67 GLU n 1 68 SER n 1 69 PRO n 1 70 VAL n 1 71 ASN n 1 72 TYR n 1 73 TRP n 1 74 MET n 1 75 PRO n 1 76 ILE n 1 77 ASP n 1 78 TRP n 1 79 THR n 1 80 GLY n 1 81 VAL n 1 82 GLY n 1 83 ILE n 1 84 HIS n 1 85 ASP n 1 86 SER n 1 87 ASP n 1 88 TRP n 1 89 GLN n 1 90 PRO n 1 91 GLU n 1 92 TYR n 1 93 GLY n 1 94 GLY n 1 95 ASP n 1 96 LEU n 1 97 TRP n 1 98 LYS n 1 99 THR n 1 100 ARG n 1 101 GLY n 1 102 SER n 1 103 HIS n 1 104 GLY n 1 105 CYS n 1 106 ILE n 1 107 ASN n 1 108 THR n 1 109 PRO n 1 110 PRO n 1 111 SER n 1 112 VAL n 1 113 MET n 1 114 LYS n 1 115 GLU n 1 116 LEU n 1 117 PHE n 1 118 GLY n 1 119 MET n 1 120 VAL n 1 121 GLU n 1 122 LYS n 1 123 GLY n 1 124 THR n 1 125 PRO n 1 126 VAL n 1 127 LEU n 1 128 VAL n 1 129 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ENTEROCOCCUS FAECIUM' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1352 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3Y185_ENTFC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q3Y185 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZGP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3Y185 _struct_ref_seq.db_align_beg 341 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 466 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 341 _struct_ref_seq.pdbx_auth_seq_align_end 466 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZGP GLY A 1 ? UNP Q3Y185 ? ? 'expression tag' 338 1 1 3ZGP HIS A 2 ? UNP Q3Y185 ? ? 'expression tag' 339 2 1 3ZGP MET A 3 ? UNP Q3Y185 ? ? 'expression tag' 340 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1RG non-polymer . ;(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid ; 'ERTAPENEM, bound form PRE-ISOMERIZED' 'C22 H27 N3 O7 S' 477.531 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 1H-15N-HSQC 1 2 1 '1H-13C-HSQC CENTERED ON ALIPHATICS' 1 3 1 '1H-15N-HMQC DETECTING 2J' 1 4 1 '3J COUPLINGS IN HISTIDINES IMIDAZOLE RING' 1 5 1 'HSQC DETECTING 1J COUPLING IN HISTIDINES IMIDAZOLE RING' 1 6 1 HNCACB 1 7 1 HNCO 1 8 1 3D-15N-NOESY-HSQC 1 9 1 '3D-13C-NOESY-HSQC CENTERED ON ALIPHATICS' 1 10 1 '1H-13C- HSQC CENTERED ON AROMATICS' 1 11 1 '3D-13C-NOESY-HSQC CENTERED ON AROMATICS' 1 12 1 '13C-15N-FILTERED NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 6.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 300 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '10% WATER/90% D2O' ? ? ? ? 2 '100% D2O' ? ? ? ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 'Direct Drive' Agilent 600 ? 2 'Direct Drive' Bruker 600 ? 3 'Direct Drive' Agilent 600 ? 4 'Direct Drive' Agilent 600 ? 5 'Direct Drive' Agilent 600 ? 6 'Direct Drive' Agilent 800 ? 7 AVANCE Bruker 950 ? 8 'Direct Drive' Agilent 800 ? 9 'Direct Drive' Agilent 800 ? # _pdbx_nmr_refine.entry_id 3ZGP _pdbx_nmr_refine.method ARIA2.3 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 3ZGP _pdbx_nmr_details.text ;THE 20 NMR STRUCTURES WERE DETERMINED USING TRIPLE- RESONANCE NMR SPECTROSCOPY ON A 13C, 15N-LABELED LDTFM SAMPLE INCUBATED WITH 1 EQUIVALENT OF ERTAPENEM ANTIBIOTIC. THESE STRUCTURES WERE REFINED IN WATER WITHIN CNS ARIA. ; # _pdbx_nmr_ensemble.entry_id 3ZGP _pdbx_nmr_ensemble.conformers_calculated_total_number 1700 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'TOTAL ENERGY' # _pdbx_nmr_representative.entry_id 3ZGP _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' UNIO 10 ? 2 'structure solution' TALOS ? ? 3 'structure solution' 'CcpNmr Analysis' ANALYSIS ? 4 # _exptl.entry_id 3ZGP _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 3ZGP _struct.title 'NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZGP _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, TRANSPEPTIDATION, PEPTIDOGLYCAN BIOSYNTHESIS, ANTIBIOTIC RESISTANCE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 96 ? GLY A 101 ? LEU A 433 GLY A 438 1 ? 6 HELX_P HELX_P2 2 PRO A 110 ? VAL A 120 ? PRO A 447 VAL A 457 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id 1RG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id CAA _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id 1RG _struct_conn.ptnr1_auth_seq_id 130 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 442 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.748 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 2 ? AC ? 4 ? AD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 6 ? ASP A 11 ? THR A 343 ASP A 348 AA 2 GLN A 15 ? LYS A 21 ? GLN A 352 LYS A 358 AA 3 LYS A 24 ? ASP A 30 ? LYS A 361 ASP A 367 AB 1 VAL A 44 ? VAL A 47 ? VAL A 381 VAL A 384 AB 2 THR A 124 ? VAL A 128 ? THR A 461 VAL A 465 AC 1 LYS A 50 ? GLU A 52 ? LYS A 387 GLU A 389 AC 2 TYR A 72 ? PRO A 75 ? TYR A 409 PRO A 412 AC 3 ILE A 83 ? ASP A 85 ? ILE A 420 ASP A 422 AC 4 ILE A 106 ? THR A 108 ? ILE A 443 THR A 445 AD 1 THR A 55 ? THR A 59 ? THR A 392 THR A 396 AD 2 PRO A 65 ? PRO A 69 ? PRO A 402 PRO A 406 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASP A 11 ? N ASP A 348 O HIS A 16 ? O HIS A 353 AA 2 3 N LYS A 21 ? N LYS A 358 O LYS A 24 ? O LYS A 361 AB 1 2 N PHE A 45 ? N PHE A 382 O VAL A 126 ? O VAL A 463 AC 1 2 N GLU A 51 ? N GLU A 388 O TRP A 73 ? O TRP A 410 AC 2 3 N MET A 74 ? N MET A 411 O ILE A 83 ? O ILE A 420 AC 3 4 N HIS A 84 ? N HIS A 421 O ILE A 106 ? O ILE A 443 AD 1 2 N GLY A 58 ? N GLY A 395 O TYR A 66 ? O TYR A 403 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 1RG _struct_site.pdbx_auth_seq_id 130 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE 1RG A 130' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 LEU A 56 ? LEU A 393 . ? 1_555 ? 2 AC1 12 THR A 59 ? THR A 396 . ? 1_555 ? 3 AC1 12 ASN A 60 ? ASN A 397 . ? 1_555 ? 4 AC1 12 ASP A 61 ? ASP A 398 . ? 1_555 ? 5 AC1 12 GLY A 63 ? GLY A 400 . ? 1_555 ? 6 AC1 12 TYR A 66 ? TYR A 403 . ? 1_555 ? 7 AC1 12 TRP A 73 ? TRP A 410 . ? 1_555 ? 8 AC1 12 GLY A 80 ? GLY A 417 . ? 1_555 ? 9 AC1 12 VAL A 81 ? VAL A 418 . ? 1_555 ? 10 AC1 12 HIS A 103 ? HIS A 440 . ? 1_555 ? 11 AC1 12 GLY A 104 ? GLY A 441 . ? 1_555 ? 12 AC1 12 CYS A 105 ? CYS A 442 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ZGP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZGP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 338 338 GLY GLY A . n A 1 2 HIS 2 339 339 HIS HIS A . n A 1 3 MET 3 340 340 MET MET A . n A 1 4 GLU 4 341 341 GLU GLU A . n A 1 5 ASP 5 342 342 ASP ASP A . n A 1 6 THR 6 343 343 THR THR A . n A 1 7 TYR 7 344 344 TYR TYR A . n A 1 8 ILE 8 345 345 ILE ILE A . n A 1 9 GLU 9 346 346 GLU GLU A . n A 1 10 VAL 10 347 347 VAL VAL A . n A 1 11 ASP 11 348 348 ASP ASP A . n A 1 12 LEU 12 349 349 LEU LEU A . n A 1 13 GLU 13 350 350 GLU GLU A . n A 1 14 ASN 14 351 351 ASN ASN A . n A 1 15 GLN 15 352 352 GLN GLN A . n A 1 16 HIS 16 353 353 HIS HIS A . n A 1 17 MET 17 354 354 MET MET A . n A 1 18 TRP 18 355 355 TRP TRP A . n A 1 19 TYR 19 356 356 TYR TYR A . n A 1 20 TYR 20 357 357 TYR TYR A . n A 1 21 LYS 21 358 358 LYS LYS A . n A 1 22 ASP 22 359 359 ASP ASP A . n A 1 23 GLY 23 360 360 GLY GLY A . n A 1 24 LYS 24 361 361 LYS LYS A . n A 1 25 VAL 25 362 362 VAL VAL A . n A 1 26 ALA 26 363 363 ALA ALA A . n A 1 27 LEU 27 364 364 LEU LEU A . n A 1 28 GLU 28 365 365 GLU GLU A . n A 1 29 THR 29 366 366 THR THR A . n A 1 30 ASP 30 367 367 ASP ASP A . n A 1 31 ILE 31 368 368 ILE ILE A . n A 1 32 VAL 32 369 369 VAL VAL A . n A 1 33 SER 33 370 370 SER SER A . n A 1 34 GLY 34 371 371 GLY GLY A . n A 1 35 LYS 35 372 372 LYS LYS A . n A 1 36 PRO 36 373 373 PRO PRO A . n A 1 37 THR 37 374 374 THR THR A . n A 1 38 THR 38 375 375 THR THR A . n A 1 39 PRO 39 376 376 PRO PRO A . n A 1 40 THR 40 377 377 THR THR A . n A 1 41 PRO 41 378 378 PRO PRO A . n A 1 42 ALA 42 379 379 ALA ALA A . n A 1 43 GLY 43 380 380 GLY GLY A . n A 1 44 VAL 44 381 381 VAL VAL A . n A 1 45 PHE 45 382 382 PHE PHE A . n A 1 46 TYR 46 383 383 TYR TYR A . n A 1 47 VAL 47 384 384 VAL VAL A . n A 1 48 TRP 48 385 385 TRP TRP A . n A 1 49 ASN 49 386 386 ASN ASN A . n A 1 50 LYS 50 387 387 LYS LYS A . n A 1 51 GLU 51 388 388 GLU GLU A . n A 1 52 GLU 52 389 389 GLU GLU A . n A 1 53 ASP 53 390 390 ASP ASP A . n A 1 54 ALA 54 391 391 ALA ALA A . n A 1 55 THR 55 392 392 THR THR A . n A 1 56 LEU 56 393 393 LEU LEU A . n A 1 57 LYS 57 394 394 LYS LYS A . n A 1 58 GLY 58 395 395 GLY GLY A . n A 1 59 THR 59 396 396 THR THR A . n A 1 60 ASN 60 397 397 ASN ASN A . n A 1 61 ASP 61 398 398 ASP ASP A . n A 1 62 ASP 62 399 399 ASP ASP A . n A 1 63 GLY 63 400 400 GLY GLY A . n A 1 64 THR 64 401 401 THR THR A . n A 1 65 PRO 65 402 402 PRO PRO A . n A 1 66 TYR 66 403 403 TYR TYR A . n A 1 67 GLU 67 404 404 GLU GLU A . n A 1 68 SER 68 405 405 SER SER A . n A 1 69 PRO 69 406 406 PRO PRO A . n A 1 70 VAL 70 407 407 VAL VAL A . n A 1 71 ASN 71 408 408 ASN ASN A . n A 1 72 TYR 72 409 409 TYR TYR A . n A 1 73 TRP 73 410 410 TRP TRP A . n A 1 74 MET 74 411 411 MET MET A . n A 1 75 PRO 75 412 412 PRO PRO A . n A 1 76 ILE 76 413 413 ILE ILE A . n A 1 77 ASP 77 414 414 ASP ASP A . n A 1 78 TRP 78 415 415 TRP TRP A . n A 1 79 THR 79 416 416 THR THR A . n A 1 80 GLY 80 417 417 GLY GLY A . n A 1 81 VAL 81 418 418 VAL VAL A . n A 1 82 GLY 82 419 419 GLY GLY A . n A 1 83 ILE 83 420 420 ILE ILE A . n A 1 84 HIS 84 421 421 HIS HIS A . n A 1 85 ASP 85 422 422 ASP ASP A . n A 1 86 SER 86 423 423 SER SER A . n A 1 87 ASP 87 424 424 ASP ASP A . n A 1 88 TRP 88 425 425 TRP TRP A . n A 1 89 GLN 89 426 426 GLN GLN A . n A 1 90 PRO 90 427 427 PRO PRO A . n A 1 91 GLU 91 428 428 GLU GLU A . n A 1 92 TYR 92 429 429 TYR TYR A . n A 1 93 GLY 93 430 430 GLY GLY A . n A 1 94 GLY 94 431 431 GLY GLY A . n A 1 95 ASP 95 432 432 ASP ASP A . n A 1 96 LEU 96 433 433 LEU LEU A . n A 1 97 TRP 97 434 434 TRP TRP A . n A 1 98 LYS 98 435 435 LYS LYS A . n A 1 99 THR 99 436 436 THR THR A . n A 1 100 ARG 100 437 437 ARG ARG A . n A 1 101 GLY 101 438 438 GLY GLY A . n A 1 102 SER 102 439 439 SER SER A . n A 1 103 HIS 103 440 440 HIS HIS A . n A 1 104 GLY 104 441 441 GLY GLY A . n A 1 105 CYS 105 442 442 CYS CYS A . n A 1 106 ILE 106 443 443 ILE ILE A . n A 1 107 ASN 107 444 444 ASN ASN A . n A 1 108 THR 108 445 445 THR THR A . n A 1 109 PRO 109 446 446 PRO PRO A . n A 1 110 PRO 110 447 447 PRO PRO A . n A 1 111 SER 111 448 448 SER SER A . n A 1 112 VAL 112 449 449 VAL VAL A . n A 1 113 MET 113 450 450 MET MET A . n A 1 114 LYS 114 451 451 LYS LYS A . n A 1 115 GLU 115 452 452 GLU GLU A . n A 1 116 LEU 116 453 453 LEU LEU A . n A 1 117 PHE 117 454 454 PHE PHE A . n A 1 118 GLY 118 455 455 GLY GLY A . n A 1 119 MET 119 456 456 MET MET A . n A 1 120 VAL 120 457 457 VAL VAL A . n A 1 121 GLU 121 458 458 GLU GLU A . n A 1 122 LYS 122 459 459 LYS LYS A . n A 1 123 GLY 123 460 460 GLY GLY A . n A 1 124 THR 124 461 461 THR THR A . n A 1 125 PRO 125 462 462 PRO PRO A . n A 1 126 VAL 126 463 463 VAL VAL A . n A 1 127 LEU 127 464 464 LEU LEU A . n A 1 128 VAL 128 465 465 VAL VAL A . n A 1 129 PHE 129 466 466 PHE PHE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 1RG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 130 _pdbx_nonpoly_scheme.auth_seq_num 130 _pdbx_nonpoly_scheme.pdb_mon_id 1RG _pdbx_nonpoly_scheme.auth_mon_id 1RG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2013-08-28 3 'Structure model' 1 2 2014-02-12 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 2 0 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Non-polymer description' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 5 'Structure model' 'Atomic model' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_nmr_spectrometer 3 5 'Structure model' atom_site 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' pdbx_nmr_software 7 5 'Structure model' pdbx_nmr_spectrometer 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.page_last' 2 4 'Structure model' '_citation.pdbx_database_id_DOI' 3 4 'Structure model' '_pdbx_nmr_spectrometer.manufacturer' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 5 'Structure model' '_atom_site.B_iso_or_equiv' 6 5 'Structure model' '_atom_site.Cartn_x' 7 5 'Structure model' '_atom_site.Cartn_y' 8 5 'Structure model' '_atom_site.Cartn_z' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_database_status.status_code_cs' 12 5 'Structure model' '_pdbx_database_status.status_code_mr' 13 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 14 5 'Structure model' '_pdbx_nmr_software.name' 15 5 'Structure model' '_pdbx_nmr_spectrometer.model' 16 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 432 ? ? HE1 A TRP 434 ? ? 1.56 2 1 O A LEU 433 ? ? H A ARG 437 ? ? 1.56 3 1 H A MET 354 ? ? O A THR 366 ? ? 1.58 4 1 H A PHE 382 ? ? O A VAL 463 ? ? 1.60 5 2 O A LEU 433 ? ? H A ARG 437 ? ? 1.58 6 2 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 7 3 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.29 8 3 O A LEU 433 ? ? H A ARG 437 ? ? 1.58 9 4 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.19 10 4 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.57 11 4 H A MET 354 ? ? O A THR 366 ? ? 1.58 12 4 O A LEU 433 ? ? H A ARG 437 ? ? 1.59 13 5 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.31 14 5 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.53 15 5 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 16 6 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.17 17 6 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.26 18 6 O A LEU 433 ? ? H A ARG 437 ? ? 1.58 19 6 O A GLU 346 ? ? H A TRP 355 ? ? 1.59 20 6 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 21 7 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.17 22 7 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.27 23 7 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.34 24 7 O A LEU 433 ? ? H A ARG 437 ? ? 1.55 25 7 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.58 26 7 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.59 27 8 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.28 28 8 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.56 29 9 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.21 30 9 O A LEU 433 ? ? H A ARG 437 ? ? 1.57 31 10 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.30 32 10 O A LEU 433 ? ? H A ARG 437 ? ? 1.59 33 10 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.59 34 11 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.28 35 11 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.33 36 11 O A LEU 433 ? ? H A ARG 437 ? ? 1.56 37 11 O A GLU 346 ? ? H A TRP 355 ? ? 1.56 38 11 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.59 39 11 OE1 A GLU 346 ? ? H A VAL 347 ? ? 1.60 40 12 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.34 41 12 O A GLU 346 ? ? H A TRP 355 ? ? 1.56 42 12 OE1 A GLU 346 ? ? H A VAL 347 ? ? 1.57 43 12 O A LEU 433 ? ? H A ARG 437 ? ? 1.59 44 12 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.59 45 13 O A LEU 433 ? ? H A ARG 437 ? ? 1.58 46 13 H A MET 354 ? ? O A THR 366 ? ? 1.60 47 13 H A GLY 380 ? ? O A VAL 465 ? ? 1.60 48 13 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 49 14 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.08 50 14 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.29 51 14 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.58 52 14 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 53 15 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.18 54 16 HH A TYR 403 ? ? HNAJ A 1RG 130 ? ? 1.19 55 16 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.26 56 16 HG22 A THR 343 ? ? HH A TYR 356 ? ? 1.33 57 16 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.55 58 16 OD1 A ASP 432 ? ? HE1 A TRP 434 ? ? 1.55 59 16 O A LEU 433 ? ? H A ARG 437 ? ? 1.57 60 16 O A GLU 346 ? ? H A TRP 355 ? ? 1.57 61 16 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.57 62 16 H A MET 354 ? ? O A THR 366 ? ? 1.59 63 17 O A GLU 346 ? ? H A TRP 355 ? ? 1.56 64 17 CG2 A THR 343 ? ? HH A TYR 356 ? ? 1.60 65 18 O A LEU 433 ? ? H A ARG 437 ? ? 1.54 66 18 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.60 67 19 O A GLU 346 ? ? H A TRP 355 ? ? 1.55 68 19 O A LEU 433 ? ? H A ARG 437 ? ? 1.56 69 19 O A VAL 347 ? ? H A PHE 466 ? ? 1.57 70 19 OE1 A GLU 346 ? ? H A VAL 347 ? ? 1.57 71 19 OD1 A ASP 348 ? ? HD21 A ASN 351 ? ? 1.59 72 20 HH A TYR 429 ? ? HD3 A PRO 447 ? ? 1.21 73 20 O A GLU 346 ? ? H A TRP 355 ? ? 1.56 74 20 H A MET 354 ? ? O A THR 366 ? ? 1.60 75 20 OE1 A GLU 346 ? ? H A VAL 347 ? ? 1.60 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 6 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.488 1.369 0.119 0.019 N 2 10 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.485 1.369 0.116 0.019 N 3 16 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.494 1.369 0.125 0.019 N 4 17 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.496 1.369 0.127 0.019 N 5 18 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.490 1.369 0.121 0.019 N 6 20 CE1 A PHE 454 ? ? CZ A PHE 454 ? ? 1.246 1.369 -0.123 0.019 N 7 20 CZ A PHE 454 ? ? CE2 A PHE 454 ? ? 1.513 1.369 0.144 0.019 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 340 ? ? 57.23 -166.55 2 1 TYR A 344 ? ? 174.61 158.39 3 1 GLN A 352 ? ? 28.80 63.86 4 1 SER A 370 ? ? -78.63 -168.08 5 1 ALA A 379 ? ? 57.67 137.88 6 1 ASP A 398 ? ? -55.71 -7.58 7 1 PRO A 412 ? ? -68.24 83.38 8 1 TRP A 415 ? ? 50.79 -2.45 9 1 VAL A 418 ? ? -56.86 172.67 10 1 ASP A 432 ? ? -53.48 102.98 11 1 HIS A 440 ? ? 35.13 -121.44 12 1 LYS A 459 ? ? -56.36 103.03 13 2 MET A 340 ? ? 60.93 -168.61 14 2 GLU A 341 ? ? -58.73 171.20 15 2 TYR A 344 ? ? 174.64 158.09 16 2 GLN A 352 ? ? 34.79 61.15 17 2 SER A 370 ? ? -77.69 -168.83 18 2 ALA A 379 ? ? 62.48 138.59 19 2 PRO A 412 ? ? -66.92 75.94 20 2 TRP A 415 ? ? 82.91 -56.73 21 2 VAL A 418 ? ? -56.19 173.08 22 2 ASP A 432 ? ? -52.01 101.89 23 2 HIS A 440 ? ? 34.18 -120.65 24 2 CYS A 442 ? ? -103.62 -165.63 25 2 LYS A 459 ? ? -57.28 102.99 26 3 MET A 340 ? ? 62.01 -167.23 27 3 TYR A 344 ? ? 174.15 158.82 28 3 GLN A 352 ? ? 32.69 63.54 29 3 SER A 370 ? ? -79.42 -167.98 30 3 ALA A 379 ? ? 61.49 138.05 31 3 PRO A 412 ? ? -67.81 73.76 32 3 TRP A 415 ? ? 52.14 -0.99 33 3 VAL A 418 ? ? -56.85 172.33 34 3 ASP A 432 ? ? -52.57 100.80 35 3 HIS A 440 ? ? 33.54 -117.61 36 3 CYS A 442 ? ? -103.57 -166.56 37 3 LYS A 459 ? ? -59.34 101.86 38 4 MET A 340 ? ? 60.97 -172.15 39 4 GLU A 341 ? ? -63.92 -179.50 40 4 TYR A 344 ? ? 173.02 159.70 41 4 GLN A 352 ? ? 32.93 61.27 42 4 ALA A 379 ? ? 59.49 138.52 43 4 ASP A 390 ? ? 39.51 47.66 44 4 ASP A 398 ? ? -58.70 -2.60 45 4 PRO A 412 ? ? -67.63 76.14 46 4 TRP A 415 ? ? 82.80 -67.29 47 4 VAL A 418 ? ? -56.26 172.81 48 4 ASP A 432 ? ? -51.47 102.35 49 4 HIS A 440 ? ? 35.99 -115.69 50 4 LYS A 459 ? ? -55.96 102.14 51 5 MET A 340 ? ? 56.22 -162.58 52 5 GLU A 341 ? ? -80.02 -153.21 53 5 TYR A 344 ? ? 174.63 157.84 54 5 GLN A 352 ? ? 32.82 62.35 55 5 ASP A 359 ? ? 75.97 41.26 56 5 SER A 370 ? ? -77.95 -168.92 57 5 ALA A 379 ? ? 59.19 137.73 58 5 ASN A 386 ? ? -170.33 128.18 59 5 ASP A 398 ? ? -59.00 -2.52 60 5 TRP A 415 ? ? 155.16 -23.19 61 5 VAL A 418 ? ? -54.91 173.31 62 5 ASP A 432 ? ? -50.53 101.03 63 5 HIS A 440 ? ? 36.35 -121.59 64 5 CYS A 442 ? ? -104.27 -166.59 65 5 LYS A 459 ? ? -59.31 103.27 66 6 MET A 340 ? ? 61.99 -165.26 67 6 TYR A 344 ? ? 174.85 157.32 68 6 GLN A 352 ? ? 34.96 61.54 69 6 SER A 370 ? ? -79.74 -168.49 70 6 ALA A 379 ? ? 60.21 139.24 71 6 PRO A 412 ? ? -67.74 74.14 72 6 TRP A 415 ? ? 56.59 -3.20 73 6 VAL A 418 ? ? -56.92 173.02 74 6 ASP A 432 ? ? -52.59 101.29 75 6 HIS A 440 ? ? 46.11 -145.00 76 6 CYS A 442 ? ? -101.57 -165.43 77 6 LYS A 459 ? ? -58.66 103.20 78 7 MET A 340 ? ? 63.20 -166.92 79 7 TYR A 344 ? ? 174.22 159.18 80 7 GLN A 352 ? ? 35.09 61.32 81 7 SER A 370 ? ? -78.25 -169.06 82 7 ALA A 379 ? ? 59.84 138.96 83 7 ASN A 386 ? ? -170.79 127.89 84 7 ASP A 398 ? ? -59.35 -3.23 85 7 PRO A 412 ? ? -68.52 67.61 86 7 TRP A 415 ? ? 50.61 1.92 87 7 VAL A 418 ? ? -59.51 172.77 88 7 ASP A 432 ? ? -51.33 102.68 89 7 HIS A 440 ? ? 37.07 -111.19 90 7 CYS A 442 ? ? -100.04 -167.99 91 7 LYS A 459 ? ? -58.91 102.10 92 8 MET A 340 ? ? 65.19 -166.11 93 8 TYR A 344 ? ? 174.27 158.70 94 8 GLN A 352 ? ? 34.79 61.61 95 8 SER A 370 ? ? -77.84 -169.39 96 8 ALA A 379 ? ? 58.24 136.15 97 8 ASP A 398 ? ? -57.02 -1.80 98 8 PRO A 412 ? ? -68.39 67.91 99 8 TRP A 415 ? ? 83.83 -47.73 100 8 VAL A 418 ? ? -55.04 173.57 101 8 ASP A 432 ? ? -51.90 101.72 102 8 HIS A 440 ? ? 38.98 -130.17 103 8 CYS A 442 ? ? -102.44 -165.35 104 8 LYS A 459 ? ? -57.82 101.64 105 9 MET A 340 ? ? 62.46 -166.82 106 9 TYR A 344 ? ? 174.56 158.30 107 9 GLN A 352 ? ? 33.62 60.63 108 9 SER A 370 ? ? -78.84 -168.46 109 9 ALA A 379 ? ? 60.27 137.13 110 9 PRO A 412 ? ? -67.71 70.40 111 9 TRP A 415 ? ? 58.03 -8.92 112 9 VAL A 418 ? ? -59.53 173.23 113 9 ASP A 432 ? ? -50.91 101.43 114 9 HIS A 440 ? ? 40.12 -129.73 115 9 CYS A 442 ? ? -103.77 -165.71 116 9 LYS A 459 ? ? -59.07 101.75 117 10 MET A 340 ? ? 61.87 -165.93 118 10 TYR A 344 ? ? 174.42 158.63 119 10 GLN A 352 ? ? 33.53 61.70 120 10 SER A 370 ? ? -79.86 -168.14 121 10 ALA A 379 ? ? 60.96 134.60 122 10 PRO A 412 ? ? -68.13 67.68 123 10 TRP A 415 ? ? 52.88 -0.43 124 10 VAL A 418 ? ? -58.97 172.66 125 10 ASP A 432 ? ? -50.58 101.80 126 10 HIS A 440 ? ? 32.59 -112.16 127 10 CYS A 442 ? ? -104.59 -166.32 128 10 LYS A 459 ? ? -55.76 102.73 129 11 MET A 340 ? ? 60.79 -162.95 130 11 TYR A 344 ? ? 174.73 158.38 131 11 GLN A 352 ? ? 32.78 61.44 132 11 SER A 370 ? ? -78.73 -168.60 133 11 ALA A 379 ? ? 54.99 137.83 134 11 PRO A 412 ? ? -66.35 83.41 135 11 TRP A 415 ? ? 86.38 -58.54 136 11 VAL A 418 ? ? -53.73 170.14 137 11 ASP A 432 ? ? -51.69 101.13 138 11 HIS A 440 ? ? 37.74 -113.64 139 11 CYS A 442 ? ? -101.56 -167.31 140 11 LYS A 459 ? ? -59.09 101.34 141 12 MET A 340 ? ? 61.97 -167.87 142 12 TYR A 344 ? ? 173.92 158.44 143 12 GLN A 352 ? ? 31.36 62.54 144 12 SER A 370 ? ? -79.36 -168.79 145 12 ALA A 379 ? ? 59.37 137.12 146 12 TRP A 415 ? ? 53.40 -5.27 147 12 VAL A 418 ? ? -55.11 172.45 148 12 ASP A 432 ? ? -51.95 101.57 149 12 HIS A 440 ? ? 36.39 -120.69 150 12 CYS A 442 ? ? -103.56 -165.37 151 12 LYS A 459 ? ? -59.20 102.01 152 13 MET A 340 ? ? 64.37 -168.64 153 13 TYR A 344 ? ? 174.67 158.61 154 13 GLN A 352 ? ? 34.19 61.83 155 13 SER A 370 ? ? -74.92 -168.93 156 13 ALA A 379 ? ? 63.14 143.93 157 13 PRO A 412 ? ? -65.87 89.03 158 13 ILE A 413 ? ? -84.18 -157.49 159 13 TRP A 415 ? ? -78.43 32.05 160 13 ASP A 432 ? ? -51.68 102.72 161 13 HIS A 440 ? ? 37.80 -125.75 162 13 CYS A 442 ? ? -104.49 -165.57 163 13 LYS A 459 ? ? -57.91 103.43 164 14 HIS A 339 ? ? 39.42 94.88 165 14 MET A 340 ? ? 67.43 -164.71 166 14 TYR A 344 ? ? 173.91 159.27 167 14 GLN A 352 ? ? 33.06 61.62 168 14 SER A 370 ? ? -75.62 -168.61 169 14 ALA A 379 ? ? 59.59 140.11 170 14 PRO A 412 ? ? -66.87 75.76 171 14 TRP A 415 ? ? 83.44 -52.47 172 14 VAL A 418 ? ? -57.06 173.16 173 14 ASP A 432 ? ? -51.78 101.46 174 14 HIS A 440 ? ? 29.52 -106.51 175 14 CYS A 442 ? ? -107.22 -167.27 176 14 PRO A 447 ? ? -58.27 -8.25 177 14 LYS A 459 ? ? -59.01 101.68 178 15 HIS A 339 ? ? 65.20 -177.59 179 15 MET A 340 ? ? -57.80 -159.64 180 15 TYR A 344 ? ? 174.60 157.47 181 15 GLN A 352 ? ? 32.53 61.62 182 15 SER A 370 ? ? -75.11 -168.92 183 15 ALA A 379 ? ? 60.20 142.88 184 15 ASN A 386 ? ? -170.20 126.88 185 15 PRO A 412 ? ? -68.03 70.36 186 15 TRP A 415 ? ? 179.73 -60.76 187 15 VAL A 418 ? ? -58.27 173.48 188 15 ASP A 432 ? ? -51.51 101.19 189 15 HIS A 440 ? ? 37.41 -124.27 190 15 CYS A 442 ? ? -104.62 -165.86 191 15 LYS A 459 ? ? -58.97 102.41 192 16 MET A 340 ? ? 62.45 -169.02 193 16 TYR A 344 ? ? 174.52 158.24 194 16 GLN A 352 ? ? 31.38 62.44 195 16 SER A 370 ? ? -78.80 -168.00 196 16 ALA A 379 ? ? 60.50 140.92 197 16 ASP A 398 ? ? -59.93 -2.42 198 16 PRO A 412 ? ? -63.41 84.45 199 16 TRP A 415 ? ? 55.32 -6.30 200 16 VAL A 418 ? ? -55.11 171.97 201 16 ASP A 432 ? ? -52.82 101.93 202 16 HIS A 440 ? ? 35.92 -118.47 203 16 CYS A 442 ? ? -103.78 -167.06 204 17 MET A 340 ? ? 62.16 -163.28 205 17 TYR A 344 ? ? 174.42 158.32 206 17 GLN A 352 ? ? 32.83 60.80 207 17 ALA A 379 ? ? 57.93 136.69 208 17 ASP A 398 ? ? -58.09 -2.61 209 17 PRO A 412 ? ? -67.59 71.40 210 17 TRP A 415 ? ? 50.72 0.68 211 17 VAL A 418 ? ? -59.13 172.79 212 17 ASP A 432 ? ? -52.59 101.95 213 17 HIS A 440 ? ? 37.09 -130.86 214 17 LYS A 459 ? ? -58.80 102.07 215 18 MET A 340 ? ? 47.95 -148.94 216 18 TYR A 344 ? ? 173.65 159.18 217 18 GLN A 352 ? ? 34.75 61.59 218 18 ALA A 379 ? ? 59.85 136.31 219 18 ASN A 386 ? ? -170.05 132.65 220 18 PRO A 412 ? ? -65.29 84.49 221 18 TRP A 415 ? ? 50.97 -4.17 222 18 VAL A 418 ? ? -55.46 172.63 223 18 ASP A 432 ? ? -50.87 102.82 224 18 HIS A 440 ? ? 39.42 -132.24 225 18 CYS A 442 ? ? -101.84 -166.08 226 18 LYS A 459 ? ? -55.38 101.47 227 19 MET A 340 ? ? 61.25 -164.06 228 19 TYR A 344 ? ? 174.11 159.00 229 19 GLN A 352 ? ? 34.09 61.76 230 19 SER A 370 ? ? -76.23 -167.67 231 19 ALA A 379 ? ? 59.41 134.24 232 19 ASP A 398 ? ? -58.12 -8.43 233 19 PRO A 412 ? ? -67.87 78.13 234 19 TRP A 415 ? ? 59.03 2.39 235 19 THR A 416 ? ? -130.71 -30.69 236 19 ASP A 432 ? ? -52.75 100.89 237 19 HIS A 440 ? ? 35.67 -133.21 238 19 LYS A 459 ? ? -57.82 101.51 239 20 MET A 340 ? ? 62.91 -166.15 240 20 TYR A 344 ? ? 174.32 158.87 241 20 GLN A 352 ? ? 34.29 61.70 242 20 ASP A 359 ? ? 74.85 37.69 243 20 SER A 370 ? ? -76.87 -169.21 244 20 ALA A 379 ? ? 61.21 137.98 245 20 ASP A 398 ? ? -56.89 -2.07 246 20 PRO A 412 ? ? -59.20 89.79 247 20 ILE A 413 ? ? -91.60 -135.62 248 20 VAL A 418 ? ? -59.74 171.06 249 20 ASP A 432 ? ? -51.90 101.82 250 20 HIS A 440 ? ? 37.33 -126.85 251 20 CYS A 442 ? ? -102.11 -166.05 252 20 LYS A 459 ? ? -55.57 103.01 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 TYR A 409 ? ? 0.061 'SIDE CHAIN' 2 5 TYR A 356 ? ? 0.090 'SIDE CHAIN' 3 5 TYR A 409 ? ? 0.054 'SIDE CHAIN' 4 7 TYR A 356 ? ? 0.085 'SIDE CHAIN' 5 7 TYR A 409 ? ? 0.056 'SIDE CHAIN' 6 8 TYR A 356 ? ? 0.090 'SIDE CHAIN' 7 8 TYR A 409 ? ? 0.070 'SIDE CHAIN' 8 9 TYR A 409 ? ? 0.052 'SIDE CHAIN' 9 11 TYR A 356 ? ? 0.088 'SIDE CHAIN' 10 11 TYR A 409 ? ? 0.059 'SIDE CHAIN' 11 12 TYR A 409 ? ? 0.052 'SIDE CHAIN' 12 14 TYR A 356 ? ? 0.088 'SIDE CHAIN' 13 14 TYR A 409 ? ? 0.060 'SIDE CHAIN' 14 15 TYR A 409 ? ? 0.061 'SIDE CHAIN' 15 16 TYR A 356 ? ? 0.091 'SIDE CHAIN' 16 17 TYR A 356 ? ? 0.087 'SIDE CHAIN' 17 18 TYR A 409 ? ? 0.066 'SIDE CHAIN' 18 19 TYR A 409 ? ? 0.060 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid ; _pdbx_entity_nonpoly.comp_id 1RG #