data_431D # _entry.id 431D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 431D pdb_0000431d 10.2210/pdb431d/pdb RCSB BD0006 ? ? WWPDB D_1000179228 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-09-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 431D _pdbx_database_status.recvd_initial_deposition_date 1998-10-09 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vlieghe, D.' 1 'Turkenburg, J.P.' 2 'Van Meervelt, L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'B-DNA at atomic resolution reveals extended hydration patterns.' 'Acta Crystallogr.,Sect.D' 55 1495 1502 1999 ABCRE6 DK 0907-4449 0766 ? 10489444 10.1107/S0907444999007933 1 'Parallel and Antiparallel (G-Gc)2 Triple Helix Fragments in a Crystal Structure' Science 273 1702 ? 1996 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vlieghe, D.' 1 ? primary 'Turkenburg, J.P.' 2 ? primary 'Van Meervelt, L.' 3 ? 1 'Vlieghe, D.' 4 ? 1 'Van Meervelt, L.' 5 ? 1 'Dautant, A.' 6 ? 1 'Gallois, B.' 7 ? 1 'Precigoux, G.' 8 ? 1 'Kennard, O.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') ; 3085.029 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 116 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGCCAATTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DC 3 13 13 DC C B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DT 7 17 17 DT T B . n B 1 8 DT 8 18 18 DT T B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 21 21 MG MG B . D 2 MG 1 22 22 MG MG B . E 3 HOH 1 25 25 HOH HOH A . E 3 HOH 2 26 26 HOH HOH A . E 3 HOH 3 27 27 HOH HOH A . E 3 HOH 4 32 32 HOH HOH A . E 3 HOH 5 34 34 HOH HOH A . E 3 HOH 6 39 39 HOH HOH A . E 3 HOH 7 42 42 HOH HOH A . E 3 HOH 8 44 44 HOH HOH A . E 3 HOH 9 45 45 HOH HOH A . E 3 HOH 10 46 46 HOH HOH A . E 3 HOH 11 48 48 HOH HOH A . E 3 HOH 12 64 64 HOH HOH A . E 3 HOH 13 67 67 HOH HOH A . E 3 HOH 14 68 68 HOH HOH A . E 3 HOH 15 70 70 HOH HOH A . E 3 HOH 16 71 71 HOH HOH A . E 3 HOH 17 72 72 HOH HOH A . E 3 HOH 18 73 73 HOH HOH A . E 3 HOH 19 79 79 HOH HOH A . E 3 HOH 20 81 81 HOH HOH A . E 3 HOH 21 85 85 HOH HOH A . E 3 HOH 22 86 86 HOH HOH A . E 3 HOH 23 87 87 HOH HOH A . E 3 HOH 24 89 89 HOH HOH A . E 3 HOH 25 92 92 HOH HOH A . E 3 HOH 26 93 93 HOH HOH A . E 3 HOH 27 94 94 HOH HOH A . E 3 HOH 28 96 96 HOH HOH A . E 3 HOH 29 97 97 HOH HOH A . E 3 HOH 30 101 101 HOH HOH A . E 3 HOH 31 104 104 HOH HOH A . E 3 HOH 32 105 105 HOH HOH A . E 3 HOH 33 106 106 HOH HOH A . E 3 HOH 34 110 110 HOH HOH A . E 3 HOH 35 111 111 HOH HOH A . E 3 HOH 36 114 114 HOH HOH A . E 3 HOH 37 115 115 HOH HOH A . E 3 HOH 38 116 116 HOH HOH A . E 3 HOH 39 119 119 HOH HOH A . E 3 HOH 40 121 121 HOH HOH A . E 3 HOH 41 129 129 HOH HOH A . E 3 HOH 42 131 131 HOH HOH A . E 3 HOH 43 132 132 HOH HOH A . E 3 HOH 44 135 135 HOH HOH A . E 3 HOH 45 136 136 HOH HOH A . E 3 HOH 46 138 138 HOH HOH A . F 3 HOH 1 23 23 HOH HOH B . F 3 HOH 2 24 24 HOH HOH B . F 3 HOH 3 28 28 HOH HOH B . F 3 HOH 4 29 29 HOH HOH B . F 3 HOH 5 30 30 HOH HOH B . F 3 HOH 6 31 31 HOH HOH B . F 3 HOH 7 33 33 HOH HOH B . F 3 HOH 8 35 35 HOH HOH B . F 3 HOH 9 36 36 HOH HOH B . F 3 HOH 10 37 37 HOH HOH B . F 3 HOH 11 38 38 HOH HOH B . F 3 HOH 12 40 40 HOH HOH B . F 3 HOH 13 41 41 HOH HOH B . F 3 HOH 14 43 43 HOH HOH B . F 3 HOH 15 47 47 HOH HOH B . F 3 HOH 16 49 49 HOH HOH B . F 3 HOH 17 50 50 HOH HOH B . F 3 HOH 18 51 51 HOH HOH B . F 3 HOH 19 52 52 HOH HOH B . F 3 HOH 20 53 53 HOH HOH B . F 3 HOH 21 54 54 HOH HOH B . F 3 HOH 22 55 55 HOH HOH B . F 3 HOH 23 56 56 HOH HOH B . F 3 HOH 24 57 57 HOH HOH B . F 3 HOH 25 58 58 HOH HOH B . F 3 HOH 26 59 59 HOH HOH B . F 3 HOH 27 60 60 HOH HOH B . F 3 HOH 28 61 61 HOH HOH B . F 3 HOH 29 62 62 HOH HOH B . F 3 HOH 30 63 63 HOH HOH B . F 3 HOH 31 65 65 HOH HOH B . F 3 HOH 32 66 66 HOH HOH B . F 3 HOH 33 69 69 HOH HOH B . F 3 HOH 34 74 74 HOH HOH B . F 3 HOH 35 75 75 HOH HOH B . F 3 HOH 36 76 76 HOH HOH B . F 3 HOH 37 77 77 HOH HOH B . F 3 HOH 38 78 78 HOH HOH B . F 3 HOH 39 80 80 HOH HOH B . F 3 HOH 40 82 82 HOH HOH B . F 3 HOH 41 83 83 HOH HOH B . F 3 HOH 42 84 84 HOH HOH B . F 3 HOH 43 88 88 HOH HOH B . F 3 HOH 44 90 90 HOH HOH B . F 3 HOH 45 91 91 HOH HOH B . F 3 HOH 46 95 95 HOH HOH B . F 3 HOH 47 98 98 HOH HOH B . F 3 HOH 48 99 99 HOH HOH B . F 3 HOH 49 100 100 HOH HOH B . F 3 HOH 50 102 102 HOH HOH B . F 3 HOH 51 103 103 HOH HOH B . F 3 HOH 52 107 107 HOH HOH B . F 3 HOH 53 108 108 HOH HOH B . F 3 HOH 54 109 109 HOH HOH B . F 3 HOH 55 112 112 HOH HOH B . F 3 HOH 56 113 113 HOH HOH B . F 3 HOH 57 117 117 HOH HOH B . F 3 HOH 58 118 118 HOH HOH B . F 3 HOH 59 120 120 HOH HOH B . F 3 HOH 60 122 122 HOH HOH B . F 3 HOH 61 123 123 HOH HOH B . F 3 HOH 62 124 124 HOH HOH B . F 3 HOH 63 125 125 HOH HOH B . F 3 HOH 64 126 126 HOH HOH B . F 3 HOH 65 127 127 HOH HOH B . F 3 HOH 66 128 128 HOH HOH B . F 3 HOH 67 130 130 HOH HOH B . F 3 HOH 68 133 133 HOH HOH B . F 3 HOH 69 134 134 HOH HOH B . F 3 HOH 70 137 137 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-93 refinement . ? 1 DENZO 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 # _cell.entry_id 431D _cell.length_a 26.106 _cell.length_b 36.455 _cell.length_c 52.559 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 431D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 431D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.31 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 289.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-05-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 431D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.15 _reflns.number_obs 17760 _reflns.number_all 17760 _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs 0.0540000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.18 _reflns_shell.percent_possible_all 94.7 _reflns_shell.Rmerge_I_obs 0.1580000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.71 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 431D _refine.ls_number_reflns_obs 16727 _refine.ls_number_reflns_all 17700 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.15 _refine.ls_percent_reflns_obs 96.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1722000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 4811 _refine.ls_number_restraints 12226 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER,J.MOL.BIOL.91(1973)201-222.' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method NONE _refine.details ;SIGMAS USED BOND LENGTHS (TARGET + SIMILAR) 0.03; ANGLE DISTANCES (TARGET + SIMILAR) 0.05; PLANE RESTRAINT FOR BASES 0.02; CHIRAL VOLUME RESTRAINT (A**3) 0.2; ANTI-BUMPING RESTRAINT FOR SOLVENT MOLECULES 0.03; ISOR RESTRAINT FOR 28 SOLVENTS 0.1, FOR 15 SOLVENTS AND 21 DNA ATOMS 0.05, FOR 3 SOLVENTS 0.025; RIGID- BOND ADP COMPONENTS 0.010; SIMILAR ADP COMPONENTS 0.062 ; _refine.pdbx_starting_model 'UDJ049 USED AS STARTING MODEL FOR REFINEMENT' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'DISTANCES AND ANGLES WITHIN THE BASES WERE RESTRAINED TO TARGET VALUES (TAYLOR AND KENNARD).' _refine.pdbx_stereochem_target_val_spec_case 'ALL OTHER CHEMICALLY EQUIVALENT BOND DISTANCES AND ANGLES WERE RESTRAINED TO BE SIMILAR BY SAME DISTANCE RESTRAINTS.' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 431D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 2 _refine_analyze.occupancy_sum_hydrogen 527.61 _refine_analyze.occupancy_sum_non_hydrogen 208. _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 416 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 534 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.052 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.155 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.042 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.067 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 431D _pdbx_refine.R_factor_all_no_cutoff 0.1722000 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1672000 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 16727 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 431D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 431D _struct.title "5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 431D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, EXTENDED HYDRATION SPINE, TRIPLET FORMATION, ATOMIC RESOLUTION, DOUBLE BACKBONE CONFORMATION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 431D _struct_ref.pdbx_db_accession 431D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 431D A 1 ? 10 ? 431D 1 ? 10 ? 1 10 2 1 431D B 1 ? 10 ? 431D 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 28 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 53 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 55 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 56 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 58 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 21 B HOH 60 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 54 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 57 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 59 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 61 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 62 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 22 B HOH 63 1_555 ? ? ? ? ? ? ? 2.208 ? ? hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 9 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 9 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 9 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? B HOH 28 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 53 ? 1_555 88.5 ? 2 O ? F HOH . ? B HOH 28 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 55 ? 1_555 178.0 ? 3 O ? F HOH . ? B HOH 53 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 55 ? 1_555 89.6 ? 4 O ? F HOH . ? B HOH 28 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 56 ? 1_555 87.0 ? 5 O ? F HOH . ? B HOH 53 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 56 ? 1_555 93.0 ? 6 O ? F HOH . ? B HOH 55 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 56 ? 1_555 93.6 ? 7 O ? F HOH . ? B HOH 28 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 58 ? 1_555 88.5 ? 8 O ? F HOH . ? B HOH 53 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 58 ? 1_555 89.5 ? 9 O ? F HOH . ? B HOH 55 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 58 ? 1_555 91.0 ? 10 O ? F HOH . ? B HOH 56 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 58 ? 1_555 174.8 ? 11 O ? F HOH . ? B HOH 28 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 93.3 ? 12 O ? F HOH . ? B HOH 53 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 177.6 ? 13 O ? F HOH . ? B HOH 55 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 88.6 ? 14 O ? F HOH . ? B HOH 56 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 88.8 ? 15 O ? F HOH . ? B HOH 58 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 88.9 ? 16 O ? F HOH . ? B HOH 54 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 57 ? 1_555 92.1 ? 17 O ? F HOH . ? B HOH 54 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 59 ? 1_555 92.0 ? 18 O ? F HOH . ? B HOH 57 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 59 ? 1_555 174.6 ? 19 O ? F HOH . ? B HOH 54 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 61 ? 1_555 99.5 ? 20 O ? F HOH . ? B HOH 57 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 61 ? 1_555 94.6 ? 21 O ? F HOH . ? B HOH 59 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 61 ? 1_555 81.2 ? 22 O ? F HOH . ? B HOH 54 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 81.6 ? 23 O ? F HOH . ? B HOH 57 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 86.9 ? 24 O ? F HOH . ? B HOH 59 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 97.2 ? 25 O ? F HOH . ? B HOH 61 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 178.1 ? 26 O ? F HOH . ? B HOH 54 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 63 ? 1_555 173.0 ? 27 O ? F HOH . ? B HOH 57 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 63 ? 1_555 90.6 ? 28 O ? F HOH . ? B HOH 59 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 63 ? 1_555 85.7 ? 29 O ? F HOH . ? B HOH 61 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 63 ? 1_555 86.7 ? 30 O ? F HOH . ? B HOH 62 ? 1_555 MG ? D MG . ? B MG 22 ? 1_555 O ? F HOH . ? B HOH 63 ? 1_555 92.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 21 ? 6 'BINDING SITE FOR RESIDUE MG B 21' AC2 Software B MG 22 ? 6 'BINDING SITE FOR RESIDUE MG B 22' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH F . ? HOH B 28 . ? 1_555 ? 2 AC1 6 HOH F . ? HOH B 53 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH B 55 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH B 56 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH B 58 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH B 60 . ? 1_555 ? 7 AC2 6 HOH F . ? HOH B 54 . ? 1_555 ? 8 AC2 6 HOH F . ? HOH B 57 . ? 1_555 ? 9 AC2 6 HOH F . ? HOH B 59 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH B 61 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH B 62 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH B 63 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.456 1.518 -0.062 0.010 N 2 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.488 1.420 0.068 0.011 N 3 1 "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 1.446 1.518 -0.072 0.010 N 4 1 C5 B DG 11 ? ? N7 B DG 11 ? ? 1.348 1.388 -0.040 0.006 N 5 1 "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 1.442 1.518 -0.076 0.010 N 6 1 "C2'" B DA 16 ? B "C1'" B DA 16 ? ? 1.448 1.518 -0.070 0.010 N 7 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? 1.486 1.420 0.066 0.011 N 8 1 "C2'" B DG 19 ? ? "C1'" B DG 19 ? ? 1.456 1.518 -0.062 0.010 N 9 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? 1.504 1.420 0.084 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 102.89 108.00 -5.11 0.70 N 2 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 110.24 106.80 3.44 0.50 N 3 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.74 118.90 3.84 0.60 N 4 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.66 108.30 6.36 0.30 N 5 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DA 5 ? ? 127.17 119.70 7.47 1.20 Y 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 101.42 108.00 -6.58 0.70 N 7 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 128.26 119.70 8.56 1.20 Y 8 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.17 108.00 -5.83 0.70 N 9 1 P A DT 7 ? ? "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? 89.79 120.90 -31.11 1.60 N 10 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 123.04 115.70 7.34 1.20 N 11 1 N1 A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 123.63 114.30 9.33 1.40 N 12 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 103.64 108.00 -4.36 0.70 N 13 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 129.75 119.70 10.05 1.20 Y 14 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 125.02 114.30 10.72 1.40 N 15 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 101.95 108.00 -6.05 0.70 N 16 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 102.91 108.00 -5.09 0.70 N 17 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 103.48 110.10 -6.62 1.00 N 18 1 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 109.05 113.10 -4.05 0.50 N 19 1 N1 B DC 13 ? ? "C1'" B DC 13 ? ? "C2'" B DC 13 ? ? 124.49 114.30 10.19 1.40 N 20 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 112.31 108.30 4.01 0.30 N 21 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 102.13 108.00 -5.87 0.70 N 22 1 "O4'" B DA 16 ? ? "C4'" B DA 16 ? ? "C3'" B DA 16 ? B 110.28 106.00 4.28 0.60 N 23 1 "C5'" B DA 16 ? ? "C4'" B DA 16 ? ? "C3'" B DA 16 ? B 124.57 115.70 8.87 1.20 N 24 1 N9 B DA 16 ? ? "C1'" B DA 16 ? ? "C2'" B DA 16 ? B 132.18 114.30 17.88 1.40 N 25 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 101.39 108.00 -6.61 0.70 N 26 1 N7 B DA 16 ? ? C8 B DA 16 ? ? N9 B DA 16 ? ? 118.81 113.80 5.01 0.50 N 27 1 C8 B DA 16 ? ? N9 B DA 16 ? ? C4 B DA 16 ? ? 101.77 105.80 -4.03 0.40 N 28 1 "C3'" B DA 16 ? A "O3'" B DA 16 ? A P B DT 17 ? A 128.23 119.70 8.53 1.20 Y 29 1 "O5'" B DT 17 ? ? P B DT 17 ? B OP1 B DT 17 ? B 119.17 110.70 8.47 1.20 N 30 1 P B DT 17 ? A "O5'" B DT 17 ? ? "C5'" B DT 17 ? ? 138.44 120.90 17.54 1.60 N 31 1 P B DT 17 ? B "O5'" B DT 17 ? ? "C5'" B DT 17 ? ? 98.05 120.90 -22.85 1.60 N 32 1 N1 B DT 18 ? ? "C1'" B DT 18 ? ? "C2'" B DT 18 ? ? 124.29 114.30 9.99 1.40 N 33 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 103.46 108.00 -4.54 0.70 N 34 1 N9 B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 122.98 114.30 8.68 1.40 N 35 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 99.91 108.00 -8.09 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 431D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 B DG 10 1_555 0.091 -0.127 -0.102 8.344 -13.362 -2.179 1 A_DC3:DG20_B A 3 ? B 20 ? 19 1 1 A DC 4 1_555 B DG 9 1_555 0.246 -0.017 -0.275 23.497 -5.825 -0.548 2 A_DC4:DG19_B A 4 ? B 19 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.068 -0.115 0.056 5.882 -16.447 1.389 3 A_DA5:DT18_B A 5 ? B 18 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.060 -0.083 0.156 2.881 -16.016 3.023 4 A_DA6:DT17_B A 6 ? B 17 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.021 -0.100 0.018 3.757 -15.532 3.825 5 A_DT7:DA16_B A 7 ? B 16 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.017 -0.107 0.102 -0.009 -12.020 5.800 6 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DG 9 1_555 B DC 4 1_555 -0.288 -0.146 -0.089 -14.461 -7.268 -2.195 7 A_DG9:DC14_B A 9 ? B 14 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.192 -0.142 0.079 -6.683 -14.000 -4.868 8 A_DG10:DC13_B A 10 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 B DG 10 1_555 A DC 4 1_555 B DG 9 1_555 0.721 0.352 3.032 7.409 12.417 24.122 -2.163 0.238 2.953 26.847 -16.019 28.069 1 AA_DC3DC4:DG19DG20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DC 4 1_555 B DG 9 1_555 A DA 5 1_555 B DT 8 1_555 0.008 0.581 3.632 0.574 3.617 45.454 0.395 0.046 3.666 4.672 -0.742 45.594 2 AA_DC4DA5:DT18DG19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.370 -0.249 3.290 -0.845 -2.410 37.485 -0.071 -0.686 3.290 -3.745 1.314 37.569 3 AA_DA5DA6:DT17DT18_BB A 5 ? B 18 ? A 6 ? B 17 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.275 -0.470 3.240 1.795 -2.830 30.721 -0.334 -0.169 3.279 -5.321 -3.375 30.899 4 AA_DA6DT7:DA16DT17_BB A 6 ? B 17 ? A 7 ? B 16 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.164 -0.432 3.386 1.710 -3.123 36.943 -0.245 -0.019 3.414 -4.914 -2.691 37.108 5 AA_DT7DT8:DA15DA16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 5 1_555 A DG 9 1_555 B DC 4 1_555 0.013 -0.652 3.507 3.035 4.093 38.285 -1.522 0.378 3.413 6.207 -4.602 38.610 6 AA_DT8DG9:DC14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DG 9 1_555 B DC 4 1_555 A DG 10 1_555 B DC 3 1_555 0.015 -0.486 3.186 -3.936 9.162 30.443 -2.462 -0.706 2.897 16.888 7.256 31.998 7 AA_DG9DG10:DC13DC14_BB A 9 ? B 14 ? A 10 ? B 13 ? # _pdbx_initial_refinement_model.accession_code 272D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'UDJ049 USED AS STARTING MODEL FOR REFINEMENT' # _atom_sites.entry_id 431D _atom_sites.fract_transf_matrix[1][1] 0.038305 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027431 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019026 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_