data_439D # _entry.id 439D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 439D pdb_0000439d 10.2210/pdb439d/pdb NDB AR0012 ? ? RCSB RCSB001328 ? ? WWPDB D_1000001328 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-09-14 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 439D _pdbx_database_status.recvd_initial_deposition_date 1999-01-05 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Perbandt, M.' 1 'Lorenz, S.' 2 'Vallazza, M.' 3 'Erdmann, V.A.' 4 'Betzel, C.' 5 # _citation.id primary _citation.title 'Structure of an RNA duplex with an unusual G.C pair in wobble-like conformation at 1.6 A resolution.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 57 _citation.page_first 219 _citation.page_last 224 _citation.year 2001 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11173467 _citation.pdbx_database_id_DOI 10.1107/S0907444900017042 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perbandt, M.' 1 ? primary 'Vallazza, M.' 2 ? primary 'Lippmann, C.' 3 ? primary 'Betzel, C.' 4 ? primary 'Erdmann, V.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3') ; 2597.601 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') ; 2517.553 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CUGGGCGG CUGGGCGG A ? 2 polyribonucleotide no no CCGCCUGG CCGCCUGG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 C n 1 7 G n 1 8 G n 2 1 C n 2 2 C n 2 3 G n 2 4 C n 2 5 C n 2 6 U n 2 7 G n 2 8 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 79 79 C C A . n A 1 2 U 2 80 80 U U A . n A 1 3 G 3 81 81 G G A . n A 1 4 G 4 82 82 G G A . n A 1 5 G 5 83 83 G G A . n A 1 6 C 6 84 84 C C A . n A 1 7 G 7 85 85 G G A . n A 1 8 G 8 86 86 G G A . n B 2 1 C 1 90 90 C C B . n B 2 2 C 2 91 91 C C B . n B 2 3 G 3 92 92 G G B . n B 2 4 C 4 93 93 C C B . n B 2 5 C 5 94 94 C C B . n B 2 6 U 6 95 95 U U B . n B 2 7 G 7 96 96 G G B . n B 2 8 G 8 97 97 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA 1 101 1 BA BA A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 4 4 HOH HOH A . D 4 HOH 3 5 5 HOH HOH A . D 4 HOH 4 7 7 HOH HOH A . D 4 HOH 5 10 10 HOH HOH A . D 4 HOH 6 11 11 HOH HOH A . D 4 HOH 7 12 12 HOH HOH A . D 4 HOH 8 13 13 HOH HOH A . D 4 HOH 9 14 14 HOH HOH A . D 4 HOH 10 23 23 HOH HOH A . D 4 HOH 11 24 24 HOH HOH A . D 4 HOH 12 26 26 HOH HOH A . D 4 HOH 13 27 27 HOH HOH A . D 4 HOH 14 29 29 HOH HOH A . D 4 HOH 15 32 32 HOH HOH A . D 4 HOH 16 34 34 HOH HOH A . D 4 HOH 17 35 35 HOH HOH A . D 4 HOH 18 36 36 HOH HOH A . D 4 HOH 19 37 37 HOH HOH A . D 4 HOH 20 38 38 HOH HOH A . D 4 HOH 21 39 39 HOH HOH A . D 4 HOH 22 40 40 HOH HOH A . D 4 HOH 23 41 41 HOH HOH A . D 4 HOH 24 42 42 HOH HOH A . D 4 HOH 25 43 43 HOH HOH A . D 4 HOH 26 44 44 HOH HOH A . D 4 HOH 27 45 45 HOH HOH A . D 4 HOH 28 46 46 HOH HOH A . D 4 HOH 29 54 54 HOH HOH A . D 4 HOH 30 56 56 HOH HOH A . D 4 HOH 31 58 58 HOH HOH A . D 4 HOH 32 59 59 HOH HOH A . D 4 HOH 33 60 60 HOH HOH A . E 4 HOH 1 2 2 HOH HOH B . E 4 HOH 2 3 3 HOH HOH B . E 4 HOH 3 6 6 HOH HOH B . E 4 HOH 4 8 8 HOH HOH B . E 4 HOH 5 9 9 HOH HOH B . E 4 HOH 6 15 15 HOH HOH B . E 4 HOH 7 16 16 HOH HOH B . E 4 HOH 8 17 17 HOH HOH B . E 4 HOH 9 18 18 HOH HOH B . E 4 HOH 10 19 19 HOH HOH B . E 4 HOH 11 20 20 HOH HOH B . E 4 HOH 12 21 21 HOH HOH B . E 4 HOH 13 22 22 HOH HOH B . E 4 HOH 14 25 25 HOH HOH B . E 4 HOH 15 28 28 HOH HOH B . E 4 HOH 16 30 30 HOH HOH B . E 4 HOH 17 31 31 HOH HOH B . E 4 HOH 18 33 33 HOH HOH B . E 4 HOH 19 47 47 HOH HOH B . E 4 HOH 20 48 48 HOH HOH B . E 4 HOH 21 49 49 HOH HOH B . E 4 HOH 22 50 50 HOH HOH B . E 4 HOH 23 51 51 HOH HOH B . E 4 HOH 24 52 52 HOH HOH B . E 4 HOH 25 53 53 HOH HOH B . E 4 HOH 26 55 55 HOH HOH B . E 4 HOH 27 57 57 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.1 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 439D _cell.length_a 41.969 _cell.length_b 41.969 _cell.length_c 127.137 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 439D _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 # _exptl.entry_id 439D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.60 _exptl_crystal.density_Matthews 2.11 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 170 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-04-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength 1.000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 439D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 5994 _reflns.number_all 5994 _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs 0.0660000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.3070000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 439D _refine.ls_number_reflns_obs 5534 _refine.ls_number_reflns_all 5534 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.2240000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2240000 _refine.ls_R_factor_R_free 0.2710000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 550 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 338 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 399 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d 0.046 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 439D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 439D _struct.title ;5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 439D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'FRAGMENT OF 5S RRNA, A-RNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 439D 439D ? ? ? 2 2 PDB 439D 439D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 439D A 1 ? 8 ? 439D 79 ? 86 ? 79 86 2 2 439D B 1 ? 8 ? 439D 90 ? 97 ? 90 97 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 1 A BA 101 1_555 ? ? ? ? ? ? ? 3.343 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 12 A BA 101 1_555 ? ? ? ? ? ? ? 2.618 ? ? metalc3 metalc ? ? D HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 13 A BA 101 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc4 metalc ? ? D HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 60 A BA 101 1_555 ? ? ? ? ? ? ? 3.019 ? ? metalc5 metalc ? ? A G 3 N7 ? ? ? 1_555 C BA . BA ? ? A G 81 A BA 101 1_555 ? ? ? ? ? ? ? 3.610 ? ? metalc6 metalc ? ? A G 4 N7 ? ? ? 1_555 C BA . BA ? ? A G 82 A BA 101 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc7 metalc ? ? A G 4 O6 ? ? ? 1_555 C BA . BA ? ? A G 82 A BA 101 1_555 ? ? ? ? ? ? ? 2.930 ? ? metalc8 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 101 B HOH 20 1_555 ? ? ? ? ? ? ? 3.501 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 79 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 79 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 79 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B G 7 O6 ? ? A U 80 B G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A U 2 O2 ? ? ? 1_555 B G 7 N1 ? ? A U 80 B G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B U 6 O2 ? ? A G 81 B U 95 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 B U 6 N3 ? ? A G 81 B U 95 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 82 B C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 82 B C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 82 B C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 83 B C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 83 B C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 83 B C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 3 N1 ? ? A C 84 B G 92 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 85 B C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 85 B C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 85 B C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 86 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 86 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 86 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 12 ? 1_555 64.7 ? 2 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 13 ? 1_555 136.4 ? 3 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 13 ? 1_555 78.0 ? 4 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 60 ? 1_555 75.7 ? 5 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 60 ? 1_555 64.4 ? 6 O ? D HOH . ? A HOH 13 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 60 ? 1_555 68.0 ? 7 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 3 ? A G 81 ? 1_555 133.0 ? 8 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 3 ? A G 81 ? 1_555 131.6 ? 9 O ? D HOH . ? A HOH 13 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 3 ? A G 81 ? 1_555 60.5 ? 10 O ? D HOH . ? A HOH 60 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 3 ? A G 81 ? 1_555 76.9 ? 11 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 4 ? A G 82 ? 1_555 72.0 ? 12 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 4 ? A G 82 ? 1_555 128.3 ? 13 O ? D HOH . ? A HOH 13 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 4 ? A G 82 ? 1_555 121.4 ? 14 O ? D HOH . ? A HOH 60 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 4 ? A G 82 ? 1_555 79.0 ? 15 N7 ? A G 3 ? A G 81 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 N7 ? A G 4 ? A G 82 ? 1_555 65.7 ? 16 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 80.3 ? 17 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 129.9 ? 18 O ? D HOH . ? A HOH 13 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 143.3 ? 19 O ? D HOH . ? A HOH 60 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 140.8 ? 20 N7 ? A G 3 ? A G 81 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 98.5 ? 21 N7 ? A G 4 ? A G 82 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A G 4 ? A G 82 ? 1_555 64.2 ? 22 O ? D HOH . ? A HOH 1 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 131.6 ? 23 O ? D HOH . ? A HOH 12 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 110.4 ? 24 O ? D HOH . ? A HOH 13 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 81.2 ? 25 O ? D HOH . ? A HOH 60 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 149.2 ? 26 N7 ? A G 3 ? A G 81 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 88.2 ? 27 N7 ? A G 4 ? A G 82 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 119.3 ? 28 O6 ? A G 4 ? A G 82 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? E HOH . ? B HOH 20 ? 1_555 67.4 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BA _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE BA A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH D . ? HOH A 12 . ? 1_555 ? 2 AC1 5 HOH D . ? HOH A 13 . ? 1_555 ? 3 AC1 5 HOH D . ? HOH A 60 . ? 1_555 ? 4 AC1 5 G A 3 ? G A 81 . ? 1_555 ? 5 AC1 5 G A 4 ? G A 82 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 39 ? ? O A HOH 45 ? ? 1.83 2 1 O B HOH 3 ? ? O B HOH 49 ? ? 1.94 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 25 ? ? 1_555 O B HOH 25 ? ? 18_655 1.71 2 1 O A HOH 32 ? ? 1_555 O B HOH 33 ? ? 3_675 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A U 80 ? ? C2 A U 80 ? ? 1.447 1.381 0.066 0.009 N 2 1 C4 A G 81 ? ? C5 A G 81 ? ? 1.335 1.379 -0.044 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A C 79 ? ? N3 A C 79 ? ? C4 A C 79 ? ? 123.70 119.90 3.80 0.50 N 2 1 N3 A C 79 ? ? C4 A C 79 ? ? C5 A C 79 ? ? 119.34 121.90 -2.56 0.40 N 3 1 N1 A C 79 ? ? C2 A C 79 ? ? O2 A C 79 ? ? 114.99 118.90 -3.91 0.60 N 4 1 N3 A C 79 ? ? C2 A C 79 ? ? O2 A C 79 ? ? 126.37 121.90 4.47 0.70 N 5 1 N1 A U 80 ? ? C2 A U 80 ? ? N3 A U 80 ? ? 109.42 114.90 -5.48 0.60 N 6 1 C2 A U 80 ? ? N3 A U 80 ? ? C4 A U 80 ? ? 133.98 127.00 6.98 0.60 N 7 1 C5 A U 80 ? ? C6 A U 80 ? ? N1 A U 80 ? ? 126.47 122.70 3.77 0.50 N 8 1 N1 A U 80 ? ? C2 A U 80 ? ? O2 A U 80 ? ? 111.89 122.80 -10.91 0.70 N 9 1 N3 A U 80 ? ? C2 A U 80 ? ? O2 A U 80 ? ? 138.66 122.20 16.46 0.70 N 10 1 N3 A U 80 ? ? C4 A U 80 ? ? O4 A U 80 ? ? 125.13 119.40 5.73 0.70 N 11 1 C5 A U 80 ? ? C4 A U 80 ? ? O4 A U 80 ? ? 121.95 125.90 -3.95 0.60 N 12 1 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 95.91 101.30 -5.39 0.70 N 13 1 C6 A G 81 ? ? N1 A G 81 ? ? C2 A G 81 ? ? 129.36 125.10 4.26 0.60 N 14 1 N1 A G 81 ? ? C2 A G 81 ? ? N3 A G 81 ? ? 120.15 123.90 -3.75 0.60 N 15 1 N3 A G 81 ? ? C4 A G 81 ? ? C5 A G 81 ? ? 131.65 128.60 3.05 0.50 N 16 1 C5 A G 81 ? ? C6 A G 81 ? ? N1 A G 81 ? ? 108.47 111.50 -3.03 0.50 N 17 1 C4 A G 81 ? ? C5 A G 81 ? ? N7 A G 81 ? ? 115.23 110.80 4.43 0.40 N 18 1 C6 A G 81 ? ? C5 A G 81 ? ? N7 A G 81 ? ? 126.78 130.40 -3.62 0.60 N 19 1 N1 A G 81 ? ? C6 A G 81 ? ? O6 A G 81 ? ? 128.97 119.90 9.07 0.60 N 20 1 C5 A G 81 ? ? C6 A G 81 ? ? O6 A G 81 ? ? 121.89 128.60 -6.71 0.60 N 21 1 "C3'" A G 82 ? ? "C2'" A G 82 ? ? "C1'" A G 82 ? ? 96.81 101.30 -4.49 0.70 N 22 1 N7 A G 82 ? ? C8 A G 82 ? ? N9 A G 82 ? ? 116.45 113.10 3.35 0.50 N 23 1 N3 A G 83 ? ? C4 A G 83 ? ? C5 A G 83 ? ? 132.29 128.60 3.69 0.50 N 24 1 N1 A G 83 ? ? C6 A G 83 ? ? O6 A G 83 ? ? 128.19 119.90 8.29 0.60 N 25 1 C5 A G 83 ? ? C6 A G 83 ? ? O6 A G 83 ? ? 120.47 128.60 -8.13 0.60 N 26 1 "C3'" A C 84 ? ? "C2'" A C 84 ? ? "C1'" A C 84 ? ? 96.33 101.30 -4.97 0.70 N 27 1 C6 A C 84 ? ? N1 A C 84 ? ? C2 A C 84 ? ? 116.51 120.30 -3.79 0.40 N 28 1 C2 A C 84 ? ? N3 A C 84 ? ? C4 A C 84 ? ? 123.16 119.90 3.26 0.50 N 29 1 N3 A C 84 ? ? C4 A C 84 ? ? C5 A C 84 ? ? 117.43 121.90 -4.47 0.40 N 30 1 C5 A C 84 ? ? C6 A C 84 ? ? N1 A C 84 ? ? 124.48 121.00 3.48 0.50 N 31 1 N1 A C 84 ? ? C2 A C 84 ? ? O2 A C 84 ? ? 112.95 118.90 -5.95 0.60 N 32 1 N3 A C 84 ? ? C2 A C 84 ? ? O2 A C 84 ? ? 127.08 121.90 5.18 0.70 N 33 1 "O4'" A G 85 ? ? "C4'" A G 85 ? ? "C3'" A G 85 ? ? 97.30 104.00 -6.70 1.00 N 34 1 "C3'" A G 85 ? ? "C2'" A G 85 ? ? "C1'" A G 85 ? ? 96.23 101.30 -5.07 0.70 N 35 1 C5 A G 85 ? ? C6 A G 85 ? ? O6 A G 85 ? ? 132.66 128.60 4.06 0.60 N 36 1 "C3'" A G 85 ? ? "O3'" A G 85 ? ? P A G 86 ? ? 128.80 119.70 9.10 1.20 Y 37 1 "C3'" B C 90 ? ? "O3'" B C 90 ? ? P B C 91 ? ? 134.84 119.70 15.14 1.20 Y 38 1 "C3'" B C 91 ? ? "C2'" B C 91 ? ? "C1'" B C 91 ? ? 95.92 101.30 -5.38 0.70 N 39 1 C2 B C 91 ? ? N3 B C 91 ? ? C4 B C 91 ? ? 123.63 119.90 3.73 0.50 N 40 1 C5 B C 91 ? ? C6 B C 91 ? ? N1 B C 91 ? ? 124.68 121.00 3.68 0.50 N 41 1 N1 B C 91 ? ? C2 B C 91 ? ? O2 B C 91 ? ? 114.25 118.90 -4.65 0.60 N 42 1 N3 B C 91 ? ? C2 B C 91 ? ? O2 B C 91 ? ? 128.95 121.90 7.05 0.70 N 43 1 N3 B C 91 ? ? C4 B C 91 ? ? N4 B C 91 ? ? 124.31 118.00 6.31 0.70 N 44 1 C5 B C 91 ? ? C4 B C 91 ? ? N4 B C 91 ? ? 114.47 120.20 -5.73 0.70 N 45 1 "C3'" B C 91 ? ? "O3'" B C 91 ? ? P B G 92 ? ? 137.27 119.70 17.57 1.20 Y 46 1 C5 B G 92 ? ? C6 B G 92 ? ? O6 B G 92 ? ? 124.02 128.60 -4.58 0.60 N 47 1 "O3'" B G 92 ? ? P B C 93 ? ? OP2 B C 93 ? ? 118.63 110.50 8.13 1.10 Y 48 1 "C3'" B C 93 ? ? "C2'" B C 93 ? ? "C1'" B C 93 ? ? 96.60 101.30 -4.70 0.70 N 49 1 N1 B C 93 ? ? C2 B C 93 ? ? O2 B C 93 ? ? 122.62 118.90 3.72 0.60 N 50 1 N3 B C 93 ? ? C2 B C 93 ? ? O2 B C 93 ? ? 117.53 121.90 -4.37 0.70 N 51 1 N3 B C 93 ? ? C4 B C 93 ? ? N4 B C 93 ? ? 112.97 118.00 -5.03 0.70 N 52 1 C5 B C 93 ? ? C4 B C 93 ? ? N4 B C 93 ? ? 126.53 120.20 6.33 0.70 N 53 1 "O3'" B C 93 ? ? P B C 94 ? ? OP2 B C 94 ? ? 118.73 110.50 8.23 1.10 Y 54 1 C5 B C 94 ? ? C4 B C 94 ? ? N4 B C 94 ? ? 124.77 120.20 4.57 0.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 10 ? D HOH . 2 1 A HOH 54 ? D HOH . 3 1 B HOH 16 ? E HOH . 4 1 B HOH 31 ? E HOH . 5 1 B HOH 55 ? E HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 C OP3 O N N 2 C P P N N 3 C OP1 O N N 4 C OP2 O N N 5 C "O5'" O N N 6 C "C5'" C N N 7 C "C4'" C N R 8 C "O4'" O N N 9 C "C3'" C N S 10 C "O3'" O N N 11 C "C2'" C N R 12 C "O2'" O N N 13 C "C1'" C N R 14 C N1 N N N 15 C C2 C N N 16 C O2 O N N 17 C N3 N N N 18 C C4 C N N 19 C N4 N N N 20 C C5 C N N 21 C C6 C N N 22 C HOP3 H N N 23 C HOP2 H N N 24 C "H5'" H N N 25 C "H5''" H N N 26 C "H4'" H N N 27 C "H3'" H N N 28 C "HO3'" H N N 29 C "H2'" H N N 30 C "HO2'" H N N 31 C "H1'" H N N 32 C H41 H N N 33 C H42 H N N 34 C H5 H N N 35 C H6 H N N 36 G OP3 O N N 37 G P P N N 38 G OP1 O N N 39 G OP2 O N N 40 G "O5'" O N N 41 G "C5'" C N N 42 G "C4'" C N R 43 G "O4'" O N N 44 G "C3'" C N S 45 G "O3'" O N N 46 G "C2'" C N R 47 G "O2'" O N N 48 G "C1'" C N R 49 G N9 N Y N 50 G C8 C Y N 51 G N7 N Y N 52 G C5 C Y N 53 G C6 C N N 54 G O6 O N N 55 G N1 N N N 56 G C2 C N N 57 G N2 N N N 58 G N3 N N N 59 G C4 C Y N 60 G HOP3 H N N 61 G HOP2 H N N 62 G "H5'" H N N 63 G "H5''" H N N 64 G "H4'" H N N 65 G "H3'" H N N 66 G "HO3'" H N N 67 G "H2'" H N N 68 G "HO2'" H N N 69 G "H1'" H N N 70 G H8 H N N 71 G H1 H N N 72 G H21 H N N 73 G H22 H N N 74 HOH O O N N 75 HOH H1 H N N 76 HOH H2 H N N 77 U OP3 O N N 78 U P P N N 79 U OP1 O N N 80 U OP2 O N N 81 U "O5'" O N N 82 U "C5'" C N N 83 U "C4'" C N R 84 U "O4'" O N N 85 U "C3'" C N S 86 U "O3'" O N N 87 U "C2'" C N R 88 U "O2'" O N N 89 U "C1'" C N R 90 U N1 N N N 91 U C2 C N N 92 U O2 O N N 93 U N3 N N N 94 U C4 C N N 95 U O4 O N N 96 U C5 C N N 97 U C6 C N N 98 U HOP3 H N N 99 U HOP2 H N N 100 U "H5'" H N N 101 U "H5''" H N N 102 U "H4'" H N N 103 U "H3'" H N N 104 U "HO3'" H N N 105 U "H2'" H N N 106 U "HO2'" H N N 107 U "H1'" H N N 108 U H3 H N N 109 U H5 H N N 110 U H6 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 U OP3 P sing N N 79 U OP3 HOP3 sing N N 80 U P OP1 doub N N 81 U P OP2 sing N N 82 U P "O5'" sing N N 83 U OP2 HOP2 sing N N 84 U "O5'" "C5'" sing N N 85 U "C5'" "C4'" sing N N 86 U "C5'" "H5'" sing N N 87 U "C5'" "H5''" sing N N 88 U "C4'" "O4'" sing N N 89 U "C4'" "C3'" sing N N 90 U "C4'" "H4'" sing N N 91 U "O4'" "C1'" sing N N 92 U "C3'" "O3'" sing N N 93 U "C3'" "C2'" sing N N 94 U "C3'" "H3'" sing N N 95 U "O3'" "HO3'" sing N N 96 U "C2'" "O2'" sing N N 97 U "C2'" "C1'" sing N N 98 U "C2'" "H2'" sing N N 99 U "O2'" "HO2'" sing N N 100 U "C1'" N1 sing N N 101 U "C1'" "H1'" sing N N 102 U N1 C2 sing N N 103 U N1 C6 sing N N 104 U C2 O2 doub N N 105 U C2 N3 sing N N 106 U N3 C4 sing N N 107 U N3 H3 sing N N 108 U C4 O4 doub N N 109 U C4 C5 sing N N 110 U C5 C6 doub N N 111 U C5 H5 sing N N 112 U C6 H6 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 439D 'double helix' 439D 'a-form double helix' 439D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 8 1_555 0.241 -0.216 -0.050 6.685 -6.826 -1.672 1 A_C79:G97_B A 79 ? B 97 ? 19 1 1 A U 2 1_555 B G 7 1_555 1.578 -0.363 -0.050 12.077 -19.650 -0.281 2 A_U80:G96_B A 80 ? B 96 ? 28 1 1 A G 3 1_555 B U 6 1_555 -2.189 -0.746 0.011 -1.932 -8.480 -12.994 3 A_G81:U95_B A 81 ? B 95 ? 28 ? 1 A G 4 1_555 B C 5 1_555 -0.109 -0.299 -0.086 -4.884 -8.003 -6.412 4 A_G82:C94_B A 82 ? B 94 ? 19 1 1 A G 5 1_555 B C 4 1_555 0.001 -0.114 0.079 -5.373 -10.212 2.816 5 A_G83:C93_B A 83 ? B 93 ? 19 1 1 A C 6 1_555 B G 3 1_555 2.134 -0.532 -0.047 1.276 -11.186 -1.850 6 A_C84:G92_B A 84 ? B 92 ? ? ? 1 A G 7 1_555 B C 2 1_555 -1.092 -0.401 -0.016 -4.102 -13.546 1.155 7 A_G85:C91_B A 85 ? B 91 ? 19 1 1 A G 8 1_555 B C 1 1_555 -0.314 -0.110 -0.172 -9.233 -12.580 -0.796 8 A_G86:C90_B A 86 ? B 90 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 8 1_555 A U 2 1_555 B G 7 1_555 0.012 -1.395 3.204 -1.223 3.470 38.194 -2.539 -0.164 3.068 5.288 1.864 38.364 1 AA_C79U80:G96G97_BB A 79 ? B 97 ? A 80 ? B 96 ? 1 A U 2 1_555 B G 7 1_555 A G 3 1_555 B U 6 1_555 -1.139 -2.239 3.380 -5.185 13.415 20.974 -8.502 1.274 1.861 32.394 12.520 25.386 2 AA_U80G81:U95G96_BB A 80 ? B 96 ? A 81 ? B 95 ? 1 A G 3 1_555 B U 6 1_555 A G 4 1_555 B C 5 1_555 0.474 -1.954 3.405 -1.439 5.586 40.877 -3.374 -0.827 3.106 7.950 2.048 41.265 3 AA_G81G82:C94U95_BB A 81 ? B 95 ? A 82 ? B 94 ? 1 A G 4 1_555 B C 5 1_555 A G 5 1_555 B C 4 1_555 0.366 -2.275 3.239 -0.542 8.793 28.723 -5.999 -0.806 2.443 17.221 1.061 30.017 4 AA_G82G83:C93C94_BB A 82 ? B 94 ? A 83 ? B 93 ? 1 A G 5 1_555 B C 4 1_555 A C 6 1_555 B G 3 1_555 -0.100 -1.612 3.113 2.937 4.922 39.066 -2.922 0.467 2.882 7.312 -4.363 39.468 5 AA_G83C84:G92C93_BB A 83 ? B 93 ? A 84 ? B 92 ? 1 A C 6 1_555 B G 3 1_555 A G 7 1_555 B C 2 1_555 0.298 -2.540 3.222 1.046 12.248 15.311 -11.733 -0.510 0.960 38.809 -3.315 19.612 6 AA_C84G85:C91G92_BB A 84 ? B 92 ? A 85 ? B 91 ? 1 A G 7 1_555 B C 2 1_555 A G 8 1_555 B C 1 1_555 -0.226 -1.743 3.343 0.458 7.340 36.704 -3.655 0.411 2.950 11.514 -0.718 37.409 7 AA_G85G86:C90C91_BB A 85 ? B 91 ? A 86 ? B 90 ? # _atom_sites.entry_id 439D _atom_sites.fract_transf_matrix[1][1] 0.023827 _atom_sites.fract_transf_matrix[1][2] 0.013756 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027512 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007865 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P # loop_