data_443D # _entry.id 443D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 443D pdb_0000443d 10.2210/pdb443d/pdb NDB DD0004 ? ? RCSB RCSB001336 ? ? WWPDB D_1000001336 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-02 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.source' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr1_symmetry' 33 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 5 'Structure model' '_struct_conn.ptnr2_symmetry' 41 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 443D _pdbx_database_status.recvd_initial_deposition_date 1999-01-14 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Squire, C.J.' 1 'Baker, L.J.' 2 'Clark, G.R.' 3 'Martin, R.F.' 4 'White, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structures of m-iodo Hoechst-DNA complexes in crystals with reduced solvent content: implications for minor groove binder drug design. ; 'Nucleic Acids Res.' 28 1252 1258 2000 NARHAD UK 0305-1048 0389 ? 10666470 10.1093/nar/28.5.1252 1 'Intermolecular interactions and water structure in a condensed phase B-DNA crystal' 'Nucleic Acids Res.' 28 1259 1265 2000 NARHAD UK 0305-1048 0389 ? ? 10.1093/nar/28.5.1259 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Squire, C.J.' 1 ? primary 'Baker, L.J.' 2 ? primary 'Clark, G.R.' 3 ? primary 'Martin, R.F.' 4 ? primary 'White, J.' 5 ? 1 'Clark, G.R.' 6 ? 1 'Squire, C.J.' 7 ? 1 'Baker, L.J.' 8 ? 1 'Martin, R.F.' 9 ? 1 'White, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn "2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 535.403 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" IA 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 IA non-polymer . "2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" ? 'C25 H24 I N6 1' 535.403 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 13 13 DC CYT B . n B 1 2 DG 2 14 14 DG GUA B . n B 1 3 DC 3 15 15 DC CYT B . n B 1 4 DG 4 16 16 DG GUA B . n B 1 5 DA 5 17 17 DA ADE B . n B 1 6 DA 6 18 18 DA ADE B . n B 1 7 DT 7 19 19 DT THY B . n B 1 8 DT 8 20 20 DT THY B . n B 1 9 DC 9 21 21 DC CYT B . n B 1 10 DG 10 22 22 DG GUA B . n B 1 11 DC 11 23 23 DC CYT B . n B 1 12 DG 12 24 24 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IA 1 25 25 IA IA A . D 3 MG 1 26 26 MG MG1 A . E 3 MG 1 27 27 MG MG2 B . F 4 HOH 1 29 29 HOH H2O A . F 4 HOH 2 31 31 HOH H2O A . F 4 HOH 3 32 32 HOH H2O A . F 4 HOH 4 33 33 HOH H2O A . F 4 HOH 5 36 36 HOH H2O A . F 4 HOH 6 37 37 HOH H2O A . F 4 HOH 7 38 38 HOH H2O A . F 4 HOH 8 43 43 HOH H2O A . F 4 HOH 9 45 45 HOH H2O A . F 4 HOH 10 47 47 HOH H2O A . F 4 HOH 11 48 48 HOH H2O A . F 4 HOH 12 49 49 HOH H2O A . F 4 HOH 13 50 50 HOH H2O A . F 4 HOH 14 51 51 HOH H2O A . F 4 HOH 15 53 53 HOH H2O A . F 4 HOH 16 54 54 HOH H2O A . F 4 HOH 17 58 58 HOH H2O A . F 4 HOH 18 59 59 HOH H2O A . F 4 HOH 19 64 64 HOH H2O A . F 4 HOH 20 65 65 HOH H2O A . F 4 HOH 21 68 26 HOH MG1 A . F 4 HOH 22 69 26 HOH MG1 A . F 4 HOH 23 70 26 HOH MG1 A . F 4 HOH 24 71 26 HOH MG1 A . G 4 HOH 1 28 28 HOH H2O B . G 4 HOH 2 30 30 HOH H2O B . G 4 HOH 3 34 34 HOH H2O B . G 4 HOH 4 35 35 HOH H2O B . G 4 HOH 5 39 39 HOH H2O B . G 4 HOH 6 40 40 HOH H2O B . G 4 HOH 7 41 41 HOH H2O B . G 4 HOH 8 42 42 HOH H2O B . G 4 HOH 9 44 44 HOH H2O B . G 4 HOH 10 46 46 HOH H2O B . G 4 HOH 11 52 52 HOH H2O B . G 4 HOH 12 55 55 HOH H2O B . G 4 HOH 13 56 56 HOH H2O B . G 4 HOH 14 57 57 HOH H2O B . G 4 HOH 15 60 60 HOH H2O B . G 4 HOH 16 61 61 HOH H2O B . G 4 HOH 17 62 62 HOH H2O B . G 4 HOH 18 63 63 HOH H2O B . G 4 HOH 19 66 66 HOH H2O B . G 4 HOH 20 67 67 HOH H2O B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 SHELXL-97 refinement . ? 2 SAINT 'data reduction' . ? 3 SAINT 'data scaling' . ? 4 SADABS 'data scaling' . ? 5 X-PLOR phasing . ? 6 # _cell.entry_id 443D _cell.length_a 24.913 _cell.length_b 34.153 _cell.length_c 61.296 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 443D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 443D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 30.88 _exptl_crystal.density_Matthews 1.78 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 MPD ? ? ? 1 4 1 METHANOL ? ? ? 1 5 1 'SODIUM CACODYLATE' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART' _diffrn_detector.pdbx_collection_date 1997-12-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7107 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 0.7107 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 443D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.6 _reflns.number_obs 7321 _reflns.number_all 7321 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.0920000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.02 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.600 _reflns_shell.d_res_low 1.657 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.4590000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 443D _refine.ls_number_reflns_obs 9194 _refine.ls_number_reflns_all 13135 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1580000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 564 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 443D _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1580000 _pdbx_refine.free_R_factor_4sig_cutoff 0.1870000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 925 _pdbx_refine.number_reflns_obs_4sig_cutoff 9194 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 443D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 443D _struct.title ;5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEX ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 443D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, MINOR GROOVE BINDING, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 443D _struct_ref.pdbx_db_accession 443D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 443D A 1 ? 12 ? 443D 1 ? 12 ? 1 12 2 1 443D B 1 ? 12 ? 443D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 10 OP2 ? ? ? 2_654 E MG . MG ? ? A DG 10 B MG 27 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc2 metalc ? ? A DG 12 OP1 ? ? ? 1_555 D MG . MG ? ? A DG 12 A MG 26 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 A HOH 68 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 A HOH 69 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 A HOH 70 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 A HOH 71 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 B DT 8 OP1 ? ? A MG 26 B DT 20 4_456 ? ? ? ? ? ? ? 2.013 ? ? metalc8 metalc ? ? B DT 7 OP1 ? ? ? 3_645 E MG . MG ? ? B DT 19 B MG 27 1_555 ? ? ? ? ? ? ? 2.647 ? ? metalc9 metalc ? ? B DC 11 OP1 ? ? ? 1_555 E MG . MG ? ? B DC 23 B MG 27 1_555 ? ? ? ? ? ? ? 2.472 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DG 10 ? A DG 10 ? 2_654 MG ? E MG . ? B MG 27 ? 1_555 OP1 ? B DT 7 ? B DT 19 ? 3_645 101.2 ? 2 OP2 ? A DG 10 ? A DG 10 ? 2_654 MG ? E MG . ? B MG 27 ? 1_555 OP1 ? B DC 11 ? B DC 23 ? 1_555 103.2 ? 3 OP1 ? B DT 7 ? B DT 19 ? 3_645 MG ? E MG . ? B MG 27 ? 1_555 OP1 ? B DC 11 ? B DC 23 ? 1_555 107.9 ? 4 OP1 ? A DG 12 ? A DG 12 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 68 ? 1_555 89.9 ? 5 OP1 ? A DG 12 ? A DG 12 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 69 ? 1_555 89.4 ? 6 O ? F HOH . ? A HOH 68 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 69 ? 1_555 171.8 ? 7 OP1 ? A DG 12 ? A DG 12 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 70 ? 1_555 83.0 ? 8 O ? F HOH . ? A HOH 68 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 70 ? 1_555 91.0 ? 9 O ? F HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 70 ? 1_555 97.0 ? 10 OP1 ? A DG 12 ? A DG 12 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 71 ? 1_555 101.3 ? 11 O ? F HOH . ? A HOH 68 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 71 ? 1_555 85.4 ? 12 O ? F HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 71 ? 1_555 86.8 ? 13 O ? F HOH . ? A HOH 70 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? A HOH 71 ? 1_555 174.3 ? 14 OP1 ? A DG 12 ? A DG 12 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 OP1 ? B DT 8 ? B DT 20 ? 4_456 158.4 ? 15 O ? F HOH . ? A HOH 68 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 OP1 ? B DT 8 ? B DT 20 ? 4_456 79.4 ? 16 O ? F HOH . ? A HOH 69 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 OP1 ? B DT 8 ? B DT 20 ? 4_456 103.9 ? 17 O ? F HOH . ? A HOH 70 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 OP1 ? B DT 8 ? B DT 20 ? 4_456 78.5 ? 18 O ? F HOH . ? A HOH 71 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 OP1 ? B DT 8 ? B DT 20 ? 4_456 96.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IA 25 ? 10 'BINDING SITE FOR RESIDUE IA A 25' AC2 Software B MG 27 ? 3 'BINDING SITE FOR RESIDUE MG B 27' AC3 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 10 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 10 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 10 DC A 9 ? DC A 9 . ? 1_555 ? 5 AC1 10 DA B 6 ? DA B 18 . ? 1_555 ? 6 AC1 10 DT B 7 ? DT B 19 . ? 1_555 ? 7 AC1 10 DT B 8 ? DT B 20 . ? 1_555 ? 8 AC1 10 DC B 9 ? DC B 21 . ? 1_555 ? 9 AC1 10 DG B 10 ? DG B 22 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH B 60 . ? 1_555 ? 11 AC2 3 DG A 10 ? DG A 10 . ? 2_654 ? 12 AC2 3 DT B 7 ? DT B 19 . ? 3_645 ? 13 AC2 3 DC B 11 ? DC B 23 . ? 1_555 ? 14 AC3 6 DG A 12 ? DG A 12 . ? 1_555 ? 15 AC3 6 HOH F . ? HOH A 68 . ? 1_555 ? 16 AC3 6 HOH F . ? HOH A 69 . ? 1_555 ? 17 AC3 6 HOH F . ? HOH A 70 . ? 1_555 ? 18 AC3 6 HOH F . ? HOH A 71 . ? 1_555 ? 19 AC3 6 DT B 8 ? DT B 20 . ? 4_456 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.567 1.512 0.055 0.007 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 1.465 1.516 -0.051 0.008 N 3 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.700 1.593 0.107 0.010 N 4 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.559 1.512 0.047 0.007 N 5 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.457 1.521 -0.064 0.010 N 6 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.571 1.512 0.059 0.007 N 7 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.448 1.521 -0.073 0.010 N 8 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.445 1.516 -0.071 0.008 N 9 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.668 1.593 0.075 0.010 N 10 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.565 1.512 0.053 0.007 N 11 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.454 1.516 -0.062 0.008 N 12 1 P A DA 5 ? ? "O5'" A DA 5 ? ? 1.677 1.593 0.084 0.010 N 13 1 "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 1.566 1.512 0.054 0.007 N 14 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.447 1.521 -0.074 0.010 N 15 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 1.466 1.516 -0.050 0.008 N 16 1 N1 A DA 5 ? ? C2 A DA 5 ? ? 1.460 1.339 0.121 0.009 N 17 1 C2 A DA 5 ? ? N3 A DA 5 ? ? 1.452 1.331 0.121 0.009 N 18 1 N3 A DA 5 ? ? C4 A DA 5 ? ? 1.412 1.344 0.068 0.006 N 19 1 C4 A DA 5 ? ? C5 A DA 5 ? ? 1.339 1.383 -0.044 0.007 N 20 1 C5 A DA 5 ? ? C6 A DA 5 ? ? 1.601 1.406 0.195 0.009 N 21 1 C6 A DA 5 ? ? N1 A DA 5 ? ? 1.286 1.351 -0.065 0.007 N 22 1 N9 A DA 5 ? ? C4 A DA 5 ? ? 1.298 1.374 -0.076 0.006 N 23 1 C6 A DA 5 ? ? N6 A DA 5 ? ? 1.182 1.335 -0.153 0.008 N 24 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.673 1.593 0.080 0.010 N 25 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.556 1.512 0.044 0.007 N 26 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.457 1.521 -0.064 0.010 N 27 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 1.462 1.516 -0.054 0.008 N 28 1 N1 A DA 6 ? ? C2 A DA 6 ? ? 1.234 1.339 -0.105 0.009 N 29 1 C2 A DA 6 ? ? N3 A DA 6 ? ? 1.424 1.331 0.093 0.009 N 30 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.393 1.344 0.049 0.006 N 31 1 C4 A DA 6 ? ? C5 A DA 6 ? ? 1.243 1.383 -0.140 0.007 N 32 1 C5 A DA 6 ? ? C6 A DA 6 ? ? 1.217 1.406 -0.189 0.009 N 33 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.440 1.388 0.052 0.006 N 34 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.444 1.374 0.070 0.006 N 35 1 C6 A DA 6 ? ? N6 A DA 6 ? ? 1.514 1.335 0.179 0.008 N 36 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.659 1.593 0.066 0.010 N 37 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.568 1.512 0.056 0.007 N 38 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.504 1.420 0.084 0.011 N 39 1 P A DT 8 ? ? "O5'" A DT 8 ? ? 1.654 1.593 0.061 0.010 N 40 1 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.560 1.512 0.048 0.007 N 41 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.459 1.521 -0.062 0.010 N 42 1 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 1.455 1.516 -0.061 0.008 N 43 1 P A DC 9 ? ? "O5'" A DC 9 ? ? 1.698 1.593 0.105 0.010 N 44 1 "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 1.562 1.512 0.050 0.007 N 45 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 1.434 1.521 -0.087 0.010 N 46 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.670 1.593 0.077 0.010 N 47 1 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.569 1.512 0.057 0.007 N 48 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 1.449 1.521 -0.072 0.010 N 49 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 1.464 1.516 -0.052 0.008 N 50 1 P A DC 11 ? ? "O5'" A DC 11 ? ? 1.668 1.593 0.075 0.010 N 51 1 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.562 1.512 0.050 0.007 N 52 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 1.452 1.521 -0.069 0.010 N 53 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 1.464 1.516 -0.052 0.008 N 54 1 P A DG 12 ? ? "O5'" A DG 12 ? ? 1.666 1.593 0.073 0.010 N 55 1 "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 1.570 1.512 0.058 0.007 N 56 1 "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 1.465 1.516 -0.051 0.008 N 57 1 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.461 1.521 -0.060 0.010 N 58 1 "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 1.467 1.516 -0.049 0.008 N 59 1 P B DG 14 ? ? "O5'" B DG 14 ? ? 1.667 1.593 0.074 0.010 N 60 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.569 1.512 0.057 0.007 N 61 1 "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 1.466 1.516 -0.050 0.008 N 62 1 P B DC 15 ? ? "O5'" B DC 15 ? ? 1.660 1.593 0.067 0.010 N 63 1 P B DG 16 ? ? "O5'" B DG 16 ? ? 1.693 1.593 0.100 0.010 N 64 1 "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.560 1.512 0.048 0.007 N 65 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 1.455 1.521 -0.066 0.010 N 66 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 1.462 1.516 -0.054 0.008 N 67 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.566 1.512 0.054 0.007 N 68 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.459 1.521 -0.062 0.010 N 69 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.457 1.516 -0.059 0.008 N 70 1 P B DA 18 ? ? "O5'" B DA 18 ? ? 1.676 1.593 0.083 0.010 N 71 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.564 1.512 0.052 0.007 N 72 1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 1.461 1.516 -0.055 0.008 N 73 1 P B DT 19 ? ? "O5'" B DT 19 ? ? 1.657 1.593 0.064 0.010 N 74 1 "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 1.564 1.512 0.052 0.007 N 75 1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 1.458 1.521 -0.063 0.010 N 76 1 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 1.458 1.516 -0.058 0.008 N 77 1 P B DT 20 ? ? "O5'" B DT 20 ? ? 1.670 1.593 0.077 0.010 N 78 1 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 1.565 1.512 0.053 0.007 N 79 1 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 1.459 1.521 -0.062 0.010 N 80 1 P B DC 21 ? ? "O5'" B DC 21 ? ? 1.655 1.593 0.062 0.010 N 81 1 "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 1.567 1.512 0.055 0.007 N 82 1 P B DG 22 ? ? "O5'" B DG 22 ? ? 1.681 1.593 0.088 0.010 N 83 1 "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 1.576 1.512 0.064 0.007 N 84 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 1.463 1.516 -0.053 0.008 N 85 1 P B DC 23 ? ? "O5'" B DC 23 ? ? 1.670 1.593 0.077 0.010 N 86 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 1.570 1.512 0.058 0.007 N 87 1 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? 1.447 1.521 -0.074 0.010 N 88 1 "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 1.461 1.516 -0.055 0.008 N 89 1 P B DG 24 ? ? "O5'" B DG 24 ? ? 1.673 1.593 0.080 0.010 N 90 1 "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 1.562 1.512 0.050 0.007 N 91 1 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 1.458 1.521 -0.063 0.010 N 92 1 "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 1.462 1.516 -0.054 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 108.78 103.10 5.68 0.90 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.75 108.00 -6.25 0.70 N 3 1 "O3'" A DC 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 90.57 104.00 -13.43 1.90 Y 4 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 133.22 119.60 13.62 1.50 N 5 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.49 109.40 -5.91 0.80 N 6 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 109.12 103.10 6.02 0.90 N 7 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.12 119.90 4.22 0.60 N 8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.34 128.60 -4.26 0.60 N 9 1 "O3'" A DG 2 ? ? P A DC 3 ? ? "O5'" A DC 3 ? ? 90.00 104.00 -14.00 1.90 Y 10 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 101.47 109.40 -7.93 0.80 N 11 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.80 108.00 -5.20 0.70 N 12 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.23 118.90 -3.67 0.60 N 13 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 132.70 119.60 13.10 1.50 N 14 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 108.91 103.10 5.81 0.90 N 15 1 OP1 A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 130.75 119.60 11.15 1.50 N 16 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 103.01 109.40 -6.39 0.80 N 17 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 108.30 120.90 -12.60 1.60 N 18 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 109.96 103.10 6.86 0.90 N 19 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 136.00 118.60 17.40 0.60 N 20 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 113.90 129.30 -15.40 0.50 N 21 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 118.39 110.60 7.79 0.50 N 22 1 N3 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 120.65 126.80 -6.15 0.70 N 23 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 126.09 117.00 9.09 0.50 N 24 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 104.57 117.70 -13.13 0.50 N 25 1 C4 A DA 5 ? ? C5 A DA 5 ? ? N7 A DA 5 ? ? 99.58 110.70 -11.12 0.50 N 26 1 C5 A DA 5 ? ? N7 A DA 5 ? ? C8 A DA 5 ? ? 117.54 103.90 13.64 0.50 N 27 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 100.91 113.80 -12.89 0.50 N 28 1 C8 A DA 5 ? ? N9 A DA 5 ? ? C4 A DA 5 ? ? 110.59 105.80 4.79 0.40 N 29 1 N9 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 111.04 105.80 5.24 0.40 N 30 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 129.32 118.60 10.72 0.60 N 31 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 135.41 119.70 15.71 1.20 Y 32 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 131.58 119.60 11.98 1.50 N 33 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 109.02 103.10 5.92 0.90 N 34 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 103.60 108.00 -4.40 0.70 N 35 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 104.35 118.60 -14.25 0.60 N 36 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 134.37 129.30 5.07 0.50 N 37 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 104.87 110.60 -5.73 0.50 N 38 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 133.35 117.70 15.65 0.50 N 39 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 96.86 110.70 -13.84 0.50 N 40 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 108.62 103.90 4.72 0.50 N 41 1 C8 A DA 6 ? ? N9 A DA 6 ? ? C4 A DA 6 ? ? 92.10 105.80 -13.70 0.40 N 42 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 126.72 105.80 20.92 0.40 N 43 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 108.68 127.40 -18.72 0.80 N 44 1 C6 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 144.90 132.30 12.60 0.70 N 45 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 111.67 118.60 -6.93 0.60 N 46 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.97 123.70 -8.73 0.80 N 47 1 C4 A DA 6 ? ? N9 A DA 6 ? ? "C1'" A DA 6 ? ? 139.19 126.30 12.89 1.80 N 48 1 "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 109.91 103.10 6.81 0.90 N 49 1 N1 A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 124.39 114.30 10.09 1.40 N 50 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 101.59 108.00 -6.41 0.70 N 51 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.57 109.40 -5.83 0.80 N 52 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 110.37 103.10 7.27 0.90 N 53 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 120.01 123.70 -3.69 0.60 N 54 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 134.54 119.60 14.94 1.50 N 55 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 100.93 109.40 -8.47 0.80 N 56 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 115.55 108.30 7.25 0.30 N 57 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 127.21 119.70 7.51 1.20 Y 58 1 "O3'" A DC 9 ? ? P A DG 10 ? ? "O5'" A DG 10 ? ? 88.69 104.00 -15.31 1.90 Y 59 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 135.90 119.60 16.30 1.50 N 60 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 103.18 109.40 -6.22 0.80 N 61 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.89 103.10 6.79 0.90 N 62 1 "O3'" A DG 10 ? ? P A DC 11 ? ? "O5'" A DC 11 ? ? 88.52 104.00 -15.48 1.90 Y 63 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 137.59 119.60 17.99 1.50 N 64 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 110.32 103.10 7.22 0.90 N 65 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 130.58 119.70 10.88 1.20 Y 66 1 N9 A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 124.80 114.30 10.50 1.40 N 67 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 97.47 108.00 -10.53 0.70 N 68 1 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 109.30 103.10 6.20 0.90 N 69 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 133.03 119.60 13.43 1.50 N 70 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 102.53 109.40 -6.87 0.80 N 71 1 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 108.78 103.10 5.68 0.90 N 72 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 120.96 125.10 -4.14 0.60 N 73 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 127.81 123.90 3.91 0.60 N 74 1 OP1 B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 133.38 119.60 13.78 1.50 N 75 1 OP1 B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 136.53 119.60 16.93 1.50 N 76 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 104.47 109.40 -4.93 0.80 N 77 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.32 108.30 3.02 0.30 N 78 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 129.49 119.60 9.89 1.50 N 79 1 "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 103.56 109.40 -5.84 0.80 N 80 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 109.11 103.10 6.01 0.90 N 81 1 OP1 B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 133.70 119.60 14.10 1.50 N 82 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 104.03 109.40 -5.37 0.80 N 83 1 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 108.51 103.10 5.41 0.90 N 84 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 137.19 119.60 17.59 1.50 N 85 1 "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 104.37 109.40 -5.03 0.80 N 86 1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.33 103.10 6.23 0.90 N 87 1 N1 B DT 19 ? ? "C1'" B DT 19 ? ? "C2'" B DT 19 ? ? 122.78 114.30 8.48 1.40 N 88 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 103.52 108.00 -4.48 0.70 N 89 1 OP1 B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 133.73 119.60 14.13 1.50 N 90 1 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.53 103.10 6.43 0.90 N 91 1 N1 B DT 20 ? ? C2 B DT 20 ? ? N3 B DT 20 ? ? 118.22 114.60 3.62 0.60 N 92 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 123.27 127.20 -3.93 0.60 N 93 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? ? 127.24 119.70 7.54 1.20 Y 94 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 102.16 109.40 -7.24 0.80 N 95 1 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 110.14 103.10 7.04 0.90 N 96 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 102.96 108.00 -5.04 0.70 N 97 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DG 22 ? ? 129.52 119.70 9.82 1.20 Y 98 1 OP1 B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 131.70 119.60 12.10 1.50 N 99 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 103.16 109.40 -6.24 0.80 N 100 1 N9 B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 125.68 114.30 11.38 1.40 N 101 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 99.01 108.00 -8.99 0.70 N 102 1 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 113.41 119.90 -6.49 0.60 N 103 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 132.51 128.60 3.91 0.60 N 104 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 129.87 119.70 10.17 1.20 Y 105 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 102.23 109.40 -7.17 0.80 N 106 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 132.30 119.60 12.70 1.50 N 107 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 103.52 109.40 -5.88 0.80 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 6 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.058 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 IA C C Y N 147 IA C1 C Y N 148 IA C2 C Y N 149 IA C3 C Y N 150 IA C4 C Y N 151 IA C5 C Y N 152 IA C6 C Y N 153 IA C7 C Y N 154 IA C8 C Y N 155 IA C9 C Y N 156 IA C10 C Y N 157 IA C11 C Y N 158 IA C12 C Y N 159 IA N1 N Y N 160 IA N2 N Y N 161 IA C13 C Y N 162 IA C14 C Y N 163 IA C15 C Y N 164 IA C16 C Y N 165 IA C17 C Y N 166 IA C18 C Y N 167 IA C19 C Y N 168 IA N3 N Y N 169 IA N4 N Y N 170 IA N6 N N N 171 IA N7 N N N 172 IA C20 C N N 173 IA C21 C N N 174 IA C22 C N N 175 IA C23 C N N 176 IA C24 C N N 177 IA I I N N 178 IA H H N N 179 IA H2 H N N 180 IA H3 H N N 181 IA H5 H N N 182 IA H9 H N N 183 IA H10 H N N 184 IA H12 H N N 185 IA HN1 H N N 186 IA H16 H N N 187 IA H17 H N N 188 IA H19 H N N 189 IA HN3 H N N 190 IA HN7 H N N 191 IA H201 H N N 192 IA H202 H N N 193 IA H211 H N N 194 IA H212 H N N 195 IA H221 H N N 196 IA H222 H N N 197 IA H231 H N N 198 IA H232 H N N 199 IA H241 H N N 200 IA H242 H N N 201 IA H243 H N N 202 MG MG MG N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 IA C C2 doub Y N 152 IA C C4 sing Y N 153 IA C H sing N N 154 IA C1 C3 doub Y N 155 IA C1 C5 sing Y N 156 IA C1 C6 sing Y N 157 IA C2 C3 sing Y N 158 IA C2 H2 sing N N 159 IA C3 H3 sing N N 160 IA C4 C5 doub Y N 161 IA C4 I sing N N 162 IA C5 H5 sing N N 163 IA C6 N1 sing Y N 164 IA C6 N2 doub Y N 165 IA C7 C8 doub Y N 166 IA C7 C12 sing Y N 167 IA C7 N1 sing Y N 168 IA C8 C9 sing Y N 169 IA C8 N2 sing Y N 170 IA C9 C10 doub Y N 171 IA C9 H9 sing N N 172 IA C10 C11 sing Y N 173 IA C10 H10 sing N N 174 IA C11 C12 doub Y N 175 IA C11 C13 sing Y N 176 IA C12 H12 sing N N 177 IA N1 HN1 sing N N 178 IA C13 N3 sing Y N 179 IA C13 N4 doub Y N 180 IA C14 C15 doub Y N 181 IA C14 C19 sing Y N 182 IA C14 N3 sing Y N 183 IA C15 C16 sing Y N 184 IA C15 N4 sing Y N 185 IA C16 C17 doub Y N 186 IA C16 H16 sing N N 187 IA C17 C18 sing Y N 188 IA C17 H17 sing N N 189 IA C18 C19 doub Y N 190 IA C18 N6 sing N N 191 IA C19 H19 sing N N 192 IA N3 HN3 sing N N 193 IA N6 C20 sing N N 194 IA N6 C23 sing N N 195 IA N7 C21 sing N N 196 IA N7 C22 sing N N 197 IA N7 C24 sing N N 198 IA N7 HN7 sing N N 199 IA C20 C21 sing N N 200 IA C20 H201 sing N N 201 IA C20 H202 sing N N 202 IA C21 H211 sing N N 203 IA C21 H212 sing N N 204 IA C22 C23 sing N N 205 IA C22 H221 sing N N 206 IA C22 H222 sing N N 207 IA C23 H231 sing N N 208 IA C23 H232 sing N N 209 IA C24 H241 sing N N 210 IA C24 H242 sing N N 211 IA C24 H243 sing N N 212 # _ndb_struct_conf_na.entry_id 443D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.351 -0.129 -0.004 13.854 -13.224 -0.003 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.186 -0.207 0.043 3.126 -11.549 -2.195 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.197 -0.067 0.395 -4.923 -12.935 4.017 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.133 -0.064 0.067 7.340 -9.591 2.562 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.175 -0.053 -0.166 8.574 -17.189 1.302 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.106 -0.054 -0.019 -1.199 -23.595 10.553 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.105 -0.098 -0.138 -8.659 -24.315 5.337 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.095 -0.173 0.021 -11.718 -19.550 0.147 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.280 -0.087 0.074 -16.062 5.154 -2.835 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.222 -0.109 0.150 10.078 -1.459 0.173 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.084 -0.182 0.237 4.693 -20.311 -2.062 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.226 -0.137 0.407 0.435 -8.040 -1.964 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.590 0.499 3.530 3.944 6.401 34.166 -0.236 -0.325 3.606 10.734 -6.614 34.959 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.548 0.266 3.497 -1.938 -3.386 38.353 0.848 -1.085 3.431 -5.138 2.940 38.544 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.296 0.893 3.093 3.743 6.553 37.706 0.570 0.899 3.156 10.017 -5.721 38.426 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.006 0.114 3.327 2.339 2.468 36.469 -0.164 0.337 3.321 3.933 -3.728 36.622 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.118 -0.095 3.358 -3.071 3.499 37.652 -0.605 -0.221 3.335 5.396 4.736 37.928 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.301 -0.432 3.415 1.426 2.668 33.339 -1.207 0.766 3.356 4.639 -2.479 33.472 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.076 0.155 3.354 -1.272 6.895 34.740 -0.791 -0.067 3.323 11.405 2.103 35.419 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 1.210 0.615 3.636 3.059 -0.733 36.464 1.092 -1.454 3.710 -1.169 -4.877 36.594 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.219 0.969 2.986 -2.964 -1.328 29.228 2.168 -0.147 2.948 -2.621 5.851 29.404 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.303 0.127 3.601 -3.544 -11.169 38.155 1.628 1.454 3.531 -16.614 5.272 39.850 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.752 0.290 3.421 -5.830 4.605 37.671 -0.174 0.366 3.505 7.047 8.923 38.370 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 443D _atom_sites.fract_transf_matrix[1][1] 0.040140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029280 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016314 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C I MG N O P # loop_