data_455D # _entry.id 455D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 455D pdb_0000455d 10.2210/pdb455d/pdb RCSB BD0008 ? ? WWPDB D_1000179237 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-08 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-29 5 'Structure model' 1 4 2024-02-28 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' ndb_struct_na_base_pair 2 4 'Structure model' ndb_struct_na_base_pair_step 3 4 'Structure model' pdbx_distant_solvent_atoms 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_struct_conn_angle 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_site 11 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_ndb_struct_na_base_pair.propeller' 2 4 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.value' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 455D _pdbx_database_status.recvd_initial_deposition_date 1999-03-04 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chiu, T.K.' 1 'Kaczor-Grzeskowiak, M.' 2 'Dickerson, R.E.' 3 # _citation.id primary _citation.title 'Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 292 _citation.page_first 589 _citation.page_last 608 _citation.year 1999 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10497024 _citation.pdbx_database_id_DOI 10.1006/jmbi.1999.3075 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chiu, T.K.' 1 ? primary 'Kaczor-Grzeskowiak, M.' 2 ? primary 'Dickerson, R.E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? 'COMPLEXED WITH THIOPROPANE' 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'DITHIOBIS-(PROPANE)' 150.305 1 ? ? ? ? 4 water nat water 18.015 150 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'DITHIOBIS-(PROPANE)' SSP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SSP non-polymer . 'DITHIOBIS-(PROPANE)' ? 'C6 H14 S2' 150.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA +A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA +A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MO6 A . D 2 MG 1 26 26 MG MO6 A . E 3 SSP 1 27 6 SSP SSP A . F 2 MG 1 27 27 MG MO5 B . G 4 HOH 1 28 28 HOH HOH A . G 4 HOH 2 29 29 HOH HOH A . G 4 HOH 3 31 31 HOH HOH A . G 4 HOH 4 32 32 HOH HOH A . G 4 HOH 5 34 34 HOH HOH A . G 4 HOH 6 35 35 HOH HOH A . G 4 HOH 7 37 37 HOH HOH A . G 4 HOH 8 39 39 HOH HOH A . G 4 HOH 9 40 40 HOH HOH A . G 4 HOH 10 41 41 HOH HOH A . G 4 HOH 11 43 43 HOH HOH A . G 4 HOH 12 44 44 HOH HOH A . G 4 HOH 13 45 45 HOH HOH A . G 4 HOH 14 46 46 HOH HOH A . G 4 HOH 15 49 49 HOH HOH A . G 4 HOH 16 51 51 HOH HOH A . G 4 HOH 17 53 53 HOH HOH A . G 4 HOH 18 54 54 HOH HOH A . G 4 HOH 19 55 55 HOH HOH A . G 4 HOH 20 59 59 HOH HOH A . G 4 HOH 21 60 60 HOH HOH A . G 4 HOH 22 61 61 HOH HOH A . G 4 HOH 23 62 62 HOH HOH A . G 4 HOH 24 66 66 HOH HOH A . G 4 HOH 25 68 68 HOH HOH A . G 4 HOH 26 69 69 HOH HOH A . G 4 HOH 27 70 70 HOH HOH A . G 4 HOH 28 71 71 HOH HOH A . G 4 HOH 29 72 72 HOH HOH A . G 4 HOH 30 74 74 HOH HOH A . G 4 HOH 31 75 75 HOH HOH A . G 4 HOH 32 76 76 HOH HOH A . G 4 HOH 33 79 79 HOH HOH A . G 4 HOH 34 80 80 HOH HOH A . G 4 HOH 35 81 81 HOH HOH A . G 4 HOH 36 82 82 HOH HOH A . G 4 HOH 37 83 83 HOH HOH A . G 4 HOH 38 84 84 HOH HOH A . G 4 HOH 39 86 86 HOH HOH A . G 4 HOH 40 87 87 HOH HOH A . G 4 HOH 41 88 88 HOH HOH A . G 4 HOH 42 89 89 HOH HOH A . G 4 HOH 43 90 90 HOH HOH A . G 4 HOH 44 91 91 HOH HOH A . G 4 HOH 45 92 92 HOH HOH A . G 4 HOH 46 93 93 HOH HOH A . G 4 HOH 47 94 94 HOH HOH A . G 4 HOH 48 95 95 HOH HOH A . G 4 HOH 49 96 96 HOH HOH A . G 4 HOH 50 97 97 HOH HOH A . G 4 HOH 51 98 98 HOH HOH A . G 4 HOH 52 104 104 HOH HOH A . G 4 HOH 53 107 107 HOH HOH A . G 4 HOH 54 108 108 HOH HOH A . G 4 HOH 55 109 109 HOH HOH A . G 4 HOH 56 111 111 HOH HOH A . G 4 HOH 57 116 116 HOH HOH A . G 4 HOH 58 117 117 HOH HOH A . G 4 HOH 59 123 123 HOH HOH A . G 4 HOH 60 125 125 HOH HOH A . G 4 HOH 61 126 126 HOH HOH A . G 4 HOH 62 127 127 HOH HOH A . G 4 HOH 63 128 128 HOH HOH A . G 4 HOH 64 129 129 HOH HOH A . G 4 HOH 65 130 130 HOH HOH A . G 4 HOH 66 131 131 HOH HOH A . G 4 HOH 67 132 132 HOH HOH A . G 4 HOH 68 133 133 HOH HOH A . G 4 HOH 69 134 134 HOH HOH A . G 4 HOH 70 146 146 HOH HOH A . G 4 HOH 71 155 155 HOH HOH A . G 4 HOH 72 156 156 HOH HOH A . G 4 HOH 73 164 164 HOH HOH A . G 4 HOH 74 166 166 HOH HOH A . G 4 HOH 75 167 25 HOH MO6 A . G 4 HOH 76 168 25 HOH MO6 A . G 4 HOH 77 169 25 HOH MO6 A . G 4 HOH 78 171 25 HOH MO6 A . G 4 HOH 79 173 26 HOH MO6 A . G 4 HOH 80 174 26 HOH MO6 A . G 4 HOH 81 175 26 HOH MO6 A . G 4 HOH 82 176 26 HOH MO6 A . G 4 HOH 83 177 26 HOH MO6 A . G 4 HOH 84 178 26 HOH MO6 A . H 4 HOH 1 30 30 HOH HOH B . H 4 HOH 2 33 33 HOH HOH B . H 4 HOH 3 36 36 HOH HOH B . H 4 HOH 4 38 38 HOH HOH B . H 4 HOH 5 42 42 HOH HOH B . H 4 HOH 6 47 47 HOH HOH B . H 4 HOH 7 48 48 HOH HOH B . H 4 HOH 8 50 50 HOH HOH B . H 4 HOH 9 52 52 HOH HOH B . H 4 HOH 10 56 56 HOH HOH B . H 4 HOH 11 57 57 HOH HOH B . H 4 HOH 12 58 58 HOH HOH B . H 4 HOH 13 63 63 HOH HOH B . H 4 HOH 14 64 64 HOH HOH B . H 4 HOH 15 65 65 HOH HOH B . H 4 HOH 16 67 67 HOH HOH B . H 4 HOH 17 73 73 HOH HOH B . H 4 HOH 18 77 77 HOH HOH B . H 4 HOH 19 78 78 HOH HOH B . H 4 HOH 20 85 85 HOH HOH B . H 4 HOH 21 99 99 HOH HOH B . H 4 HOH 22 100 100 HOH HOH B . H 4 HOH 23 101 101 HOH HOH B . H 4 HOH 24 102 102 HOH HOH B . H 4 HOH 25 103 103 HOH HOH B . H 4 HOH 26 105 105 HOH HOH B . H 4 HOH 27 106 106 HOH HOH B . H 4 HOH 28 110 110 HOH HOH B . H 4 HOH 29 112 112 HOH HOH B . H 4 HOH 30 113 113 HOH HOH B . H 4 HOH 31 114 114 HOH HOH B . H 4 HOH 32 115 115 HOH HOH B . H 4 HOH 33 118 118 HOH HOH B . H 4 HOH 34 119 119 HOH HOH B . H 4 HOH 35 120 120 HOH HOH B . H 4 HOH 36 121 121 HOH HOH B . H 4 HOH 37 122 122 HOH HOH B . H 4 HOH 38 124 124 HOH HOH B . H 4 HOH 39 135 135 HOH HOH B . H 4 HOH 40 136 136 HOH HOH B . H 4 HOH 41 137 137 HOH HOH B . H 4 HOH 42 138 138 HOH HOH B . H 4 HOH 43 139 139 HOH HOH B . H 4 HOH 44 140 140 HOH HOH B . H 4 HOH 45 141 141 HOH HOH B . H 4 HOH 46 142 142 HOH HOH B . H 4 HOH 47 147 147 HOH HOH B . H 4 HOH 48 148 148 HOH HOH B . H 4 HOH 49 149 149 HOH HOH B . H 4 HOH 50 150 150 HOH HOH B . H 4 HOH 51 151 151 HOH HOH B . H 4 HOH 52 153 153 HOH HOH B . H 4 HOH 53 154 154 HOH HOH B . H 4 HOH 54 157 157 HOH HOH B . H 4 HOH 55 160 160 HOH HOH B . H 4 HOH 56 161 161 HOH HOH B . H 4 HOH 57 162 162 HOH HOH B . H 4 HOH 58 163 163 HOH HOH B . H 4 HOH 59 165 165 HOH HOH B . H 4 HOH 60 170 25 HOH MO6 B . H 4 HOH 61 172 25 HOH MO6 B . H 4 HOH 62 179 27 HOH MO5 B . H 4 HOH 63 180 27 HOH MO5 B . H 4 HOH 64 182 27 HOH MO5 B . H 4 HOH 65 183 27 HOH MO5 B . H 4 HOH 66 184 27 HOH MO5 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.843 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 455D _cell.length_a 24.544 _cell.length_b 39.303 _cell.length_c 66.964 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 455D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 455D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_percent_sol 30.5 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 DITHIOTHREITOL ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRRORS _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 455D _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.0 _reflns.d_resolution_high 1.43 _reflns.number_obs 11200 _reflns.number_all ? _reflns.percent_possible_obs 89.4 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38.1 _reflns.B_iso_Wilson_estimate 17.85 _reflns.pdbx_redundancy 9.49 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.43 _reflns_shell.d_res_low 1.54 _reflns_shell.percent_possible_all 80.8 _reflns_shell.Rmerge_I_obs 0.156 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.9 _reflns_shell.pdbx_redundancy 6.73 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 455D _refine.ls_number_reflns_obs 11016 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.43 _refine.ls_percent_reflns_obs 88.5 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.276 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1055 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 13.56 _refine.aniso_B[1][1] 3.65 _refine.aniso_B[2][2] -3.12 _refine.aniso_B[3][3] -1.40 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'STARTING MODEL IS IDEAL B-DNA RMS-FITTED ONTO COORDINATES OF ORIGINAL DREW STRUCTURE (1BNA)' _refine.pdbx_starting_model 'IDEAL B-DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMEN' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 647 _refine_hist.d_res_high 1.43 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.70 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 18.65 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.46 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 455D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 455D _struct.title 'A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 455D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'INTER-STRAND CROSSLINKING, DODECAMER CGCGAATTCGCG/CGCGAATTCGCG, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 455D _struct_ref.pdbx_db_accession 455D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 455D A 1 ? 12 ? 455D 1 ? 12 ? 1 12 2 1 455D B 1 ? 12 ? 455D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DA 6 N6 ? ? ? 1_555 E SSP . CA1 ? ? A DA 6 A SSP 27 1_555 ? ? ? ? ? ? ? 1.450 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 167 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 168 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 169 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 171 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 170 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 172 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 173 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 174 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 175 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 176 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 177 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 26 A HOH 178 1_555 ? ? ? ? ? ? ? 1.972 ? ? metalc13 metalc ? ? B DA 5 OP1 ? ? ? 1_555 F MG . MG ? ? B DA 17 B MG 27 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 27 B HOH 179 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 27 B HOH 180 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 27 B HOH 182 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 27 B HOH 183 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 27 B HOH 184 1_555 ? ? ? ? ? ? ? 2.053 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 168 ? 1_555 176.1 ? 2 O ? G HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 169 ? 1_555 90.4 ? 3 O ? G HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 169 ? 1_555 93.5 ? 4 O ? G HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 171 ? 1_555 89.9 ? 5 O ? G HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 171 ? 1_555 90.2 ? 6 O ? G HOH . ? A HOH 169 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 171 ? 1_555 87.4 ? 7 O ? G HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 170 ? 1_555 89.6 ? 8 O ? G HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 170 ? 1_555 86.5 ? 9 O ? G HOH . ? A HOH 169 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 170 ? 1_555 176.8 ? 10 O ? G HOH . ? A HOH 171 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 170 ? 1_555 95.8 ? 11 O ? G HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 172 ? 1_555 92.4 ? 12 O ? G HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 172 ? 1_555 87.7 ? 13 O ? G HOH . ? A HOH 169 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 172 ? 1_555 88.3 ? 14 O ? G HOH . ? A HOH 171 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 172 ? 1_555 175.1 ? 15 O ? H HOH . ? B HOH 170 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 172 ? 1_555 88.4 ? 16 O ? G HOH . ? A HOH 173 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 174 ? 1_555 169.0 ? 17 O ? G HOH . ? A HOH 173 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 175 ? 1_555 93.1 ? 18 O ? G HOH . ? A HOH 174 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 175 ? 1_555 81.6 ? 19 O ? G HOH . ? A HOH 173 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 176 ? 1_555 88.1 ? 20 O ? G HOH . ? A HOH 174 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 176 ? 1_555 97.4 ? 21 O ? G HOH . ? A HOH 175 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 176 ? 1_555 178.5 ? 22 O ? G HOH . ? A HOH 173 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 177 ? 1_555 84.4 ? 23 O ? G HOH . ? A HOH 174 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 177 ? 1_555 86.2 ? 24 O ? G HOH . ? A HOH 175 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 177 ? 1_555 92.4 ? 25 O ? G HOH . ? A HOH 176 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 177 ? 1_555 88.7 ? 26 O ? G HOH . ? A HOH 173 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 178 ? 1_555 91.2 ? 27 O ? G HOH . ? A HOH 174 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 178 ? 1_555 98.3 ? 28 O ? G HOH . ? A HOH 175 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 178 ? 1_555 89.2 ? 29 O ? G HOH . ? A HOH 176 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 178 ? 1_555 89.9 ? 30 O ? G HOH . ? A HOH 177 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? G HOH . ? A HOH 178 ? 1_555 175.4 ? 31 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 179 ? 1_555 93.5 ? 32 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 180 ? 1_555 86.3 ? 33 O ? H HOH . ? B HOH 179 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 180 ? 1_555 169.7 ? 34 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 182 ? 1_555 81.8 ? 35 O ? H HOH . ? B HOH 179 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 182 ? 1_555 95.6 ? 36 O ? H HOH . ? B HOH 180 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 182 ? 1_555 94.6 ? 37 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 183 ? 1_555 98.5 ? 38 O ? H HOH . ? B HOH 179 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 183 ? 1_555 85.1 ? 39 O ? H HOH . ? B HOH 180 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 183 ? 1_555 84.7 ? 40 O ? H HOH . ? B HOH 182 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 183 ? 1_555 179.3 ? 41 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 184 ? 1_555 168.5 ? 42 O ? H HOH . ? B HOH 179 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 184 ? 1_555 92.7 ? 43 O ? H HOH . ? B HOH 180 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 184 ? 1_555 89.5 ? 44 O ? H HOH . ? B HOH 182 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 184 ? 1_555 88.0 ? 45 O ? H HOH . ? B HOH 183 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? B HOH 184 ? 1_555 91.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 25 ? 6 'BINDING SITE FOR RESIDUE MG A 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' AC3 Software B MG 27 ? 6 'BINDING SITE FOR RESIDUE MG B 27' AC4 Software A SSP 27 ? 6 'BINDING SITE FOR RESIDUE SSP A 27' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 167 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 168 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 169 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 171 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 170 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 172 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 173 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 174 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 175 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 176 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 177 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 178 . ? 1_555 ? 13 AC3 6 DA B 5 ? DA B 17 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH B 179 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH B 180 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH B 182 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH B 183 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH B 184 . ? 1_555 ? 19 AC4 6 DA A 5 ? DA A 5 . ? 1_555 ? 20 AC4 6 DA A 6 ? DA A 6 . ? 1_555 ? 21 AC4 6 DT A 7 ? DT A 7 . ? 1_555 ? 22 AC4 6 DA B 5 ? DA B 17 . ? 1_555 ? 23 AC4 6 DA B 6 ? DA B 18 . ? 1_555 ? 24 AC4 6 DT B 7 ? DT B 19 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N6 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 18 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CA2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SSP _pdbx_validate_close_contact.auth_seq_id_2 27 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.45 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 41 ? 6.07 . 2 1 O ? A HOH 89 ? 6.29 . 3 1 O ? A HOH 94 ? 6.31 . 4 1 O ? A HOH 155 ? 7.59 . 5 1 O ? A HOH 156 ? 6.51 . 6 1 O ? B HOH 120 ? 6.04 . 7 1 O ? B HOH 139 ? 6.50 . 8 1 O ? B HOH 161 ? 6.28 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 SSP S1 S N N 148 SSP S2 S N N 149 SSP CA1 C N N 150 SSP CB1 C N N 151 SSP CG1 C N N 152 SSP CA2 C N N 153 SSP CB2 C N N 154 SSP CG2 C N N 155 SSP HA11 H N N 156 SSP HA12 H N N 157 SSP HA13 H N N 158 SSP HB11 H N N 159 SSP HB12 H N N 160 SSP HG11 H N N 161 SSP HG12 H N N 162 SSP HA21 H N N 163 SSP HA22 H N N 164 SSP HA23 H N N 165 SSP HB21 H N N 166 SSP HB22 H N N 167 SSP HG21 H N N 168 SSP HG22 H N N 169 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SSP S1 S2 sing N N 152 SSP S1 CG1 sing N N 153 SSP S2 CG2 sing N N 154 SSP CA1 CB1 sing N N 155 SSP CA1 HA11 sing N N 156 SSP CA1 HA12 sing N N 157 SSP CA1 HA13 sing N N 158 SSP CB1 CG1 sing N N 159 SSP CB1 HB11 sing N N 160 SSP CB1 HB12 sing N N 161 SSP CG1 HG11 sing N N 162 SSP CG1 HG12 sing N N 163 SSP CA2 CB2 sing N N 164 SSP CA2 HA21 sing N N 165 SSP CA2 HA22 sing N N 166 SSP CA2 HA23 sing N N 167 SSP CB2 CG2 sing N N 168 SSP CB2 HB21 sing N N 169 SSP CB2 HB22 sing N N 170 SSP CG2 HG21 sing N N 171 SSP CG2 HG22 sing N N 172 # _ndb_struct_conf_na.entry_id 455D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.438 -0.175 0.172 5.497 -21.354 2.333 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.206 -0.186 0.149 0.285 -6.869 -1.282 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.100 -0.155 0.140 0.083 -7.238 -0.306 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.305 -0.138 0.074 10.097 -15.396 1.509 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.129 -0.150 -0.115 -0.226 -13.713 0.658 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.028 -0.070 0.102 -0.716 -9.725 5.267 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.110 -0.119 0.109 -0.035 -9.787 2.774 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.100 -0.116 -0.194 2.875 -10.489 3.331 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.295 -0.064 0.082 -9.825 -11.586 -0.658 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.070 -0.140 0.203 4.632 -7.747 0.133 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.169 -0.202 0.252 4.522 -22.448 -1.378 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.187 -0.149 0.261 9.864 10.279 -3.014 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.306 0.150 3.477 -0.375 7.134 34.949 -0.862 0.441 3.443 11.727 0.617 35.649 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.601 0.627 3.313 0.524 -3.334 40.560 1.272 -0.806 3.261 -4.799 -0.754 40.694 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.321 0.855 3.231 2.417 6.778 27.048 0.135 1.247 3.303 14.176 -5.054 27.972 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.233 -0.252 3.374 0.577 3.794 40.353 -0.799 -0.271 3.340 5.484 -0.834 40.528 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.110 -0.683 3.208 -2.265 -0.619 34.177 -1.064 -0.537 3.206 -1.053 3.848 34.255 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.054 -1.044 3.307 0.618 -5.748 30.418 -0.800 0.226 3.440 -10.832 -1.165 30.950 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.067 -0.625 3.094 3.328 -1.491 33.412 -0.849 0.402 3.110 -2.583 -5.767 33.605 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.243 -0.216 3.575 -0.337 -3.219 42.543 0.057 0.297 3.583 -4.428 0.463 42.660 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.533 0.803 3.030 -1.533 5.802 26.542 0.326 -1.499 3.097 12.437 3.285 27.200 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.161 0.699 3.311 -3.880 -10.955 42.556 1.968 1.182 3.136 -14.766 5.230 44.044 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.044 0.660 3.195 0.771 -4.021 34.818 1.681 -1.621 3.123 -6.692 -1.284 35.051 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'IDEAL B-DNA' # _atom_sites.entry_id 455D _atom_sites.fract_transf_matrix[1][1] 0.040743 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025443 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014933 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_