data_469D # _entry.id 469D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 469D pdb_0000469d 10.2210/pdb469d/pdb RCSB AR0015 ? ? WWPDB D_1000179246 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-12 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2013-01-16 6 'Structure model' 1 5 2013-02-27 7 'Structure model' 1 6 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Atomic model' 5 6 'Structure model' 'Atomic model' 6 7 'Structure model' 'Data collection' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' chem_comp_atom 2 7 'Structure model' chem_comp_bond 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_struct_conn_angle 5 7 'Structure model' struct_conn 6 7 'Structure model' struct_conn_type 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_database_2.pdbx_DOI' 2 7 'Structure model' '_database_2.pdbx_database_accession' 3 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 7 'Structure model' '_pdbx_struct_conn_angle.value' 6 7 'Structure model' '_struct_conn.conn_type_id' 7 7 'Structure model' '_struct_conn.id' 8 7 'Structure model' '_struct_conn.pdbx_dist_value' 9 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 7 'Structure model' '_struct_conn.ptnr1_symmetry' 18 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 7 'Structure model' '_struct_conn.ptnr2_symmetry' 26 7 'Structure model' '_struct_conn_type.id' 27 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 469D _pdbx_database_status.recvd_initial_deposition_date 1999-04-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teplova, M.' 1 'Minasov, G.' 2 'Tereshko, V.' 3 'Inamati, G.' 4 'Cook, P.D.' 5 'Egli, M.' 6 # _citation.id primary _citation.title ;Crystal structure and improved antisense properties of 2'-O-(2-methoxyethyl)-RNA. ; _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 6 _citation.page_first 535 _citation.page_last 539 _citation.year 1999 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10360355 _citation.pdbx_database_id_DOI 10.1038/9304 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teplova, M.' 1 ? primary 'Minasov, G.' 2 ? primary 'Tereshko, V.' 3 ? primary 'Inamati, G.B.' 4 ? primary 'Cook, P.D.' 5 ? primary 'Manoharan, M.' 6 ? primary 'Egli, M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(C43)P*(G48)P*(C43)P*(G48)P*(A44)P*(A44)P*(U36)P*(U36)P*(C43)P*(G48)P*(C43)P*(G48))-3') ; 4524.284 2 ? ? ? 'O2* OF EACH RIBOSE MODIFIED BY METHOXYETHYL' 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 105 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(C43)(G48)(C43)(G48)(A44)(A44)(U36)(U36)(C43)(G48)(C43)(G48)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C43 n 1 2 G48 n 1 3 C43 n 1 4 G48 n 1 5 A44 n 1 6 A44 n 1 7 U36 n 1 8 U36 n 1 9 C43 n 1 10 G48 n 1 11 C43 n 1 12 G48 n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A44 'RNA linking' n ;2'-O-METHYOXYETHYL-ADENOSINE 5'-MONOPHOSPHATE ; ? 'C13 H20 N5 O8 P' 405.300 C43 'RNA linking' n "2'-O-METHYOXYETHYL-CYTIDINE-5'-MONOPHOSPHATE" ? 'C12 H20 N3 O9 P' 381.276 G48 'RNA linking' n "2'-O-METHYOXYETHYL-GUANOSINE-5'-MONOPHOSPHATE" ? 'C13 H20 N5 O9 P' 421.300 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U36 'RNA linking' n "2'-O-METHYOXYETHYL-URIDINE-5'-MONOPHOSPHATE" ? 'C12 H19 N2 O10 P' 382.260 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C43 1 1 1 C43 +C A . n A 1 2 G48 2 2 2 G48 +G A . n A 1 3 C43 3 3 3 C43 +C A . n A 1 4 G48 4 4 4 G48 +G A . n A 1 5 A44 5 5 5 A44 +A A . n A 1 6 A44 6 6 6 A44 +A A . n A 1 7 U36 7 7 7 U36 +U A . n A 1 8 U36 8 8 8 U36 +U A . n A 1 9 C43 9 9 9 C43 +C A . n A 1 10 G48 10 10 10 G48 +G A . n A 1 11 C43 11 11 11 C43 +C A . n A 1 12 G48 12 12 12 G48 +G A . n B 1 1 C43 1 13 13 C43 +C B . n B 1 2 G48 2 14 14 G48 +G B . n B 1 3 C43 3 15 15 C43 +C B . n B 1 4 G48 4 16 16 G48 +G B . n B 1 5 A44 5 17 17 A44 +A B . n B 1 6 A44 6 18 18 A44 +A B . n B 1 7 U36 7 19 19 U36 +U B . n B 1 8 U36 8 20 20 U36 +U B . n B 1 9 C43 9 21 21 C43 +C B . n B 1 10 G48 10 22 22 G48 +G B . n B 1 11 C43 11 23 23 C43 +C B . n B 1 12 G48 12 24 24 G48 +G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 100 100 MG MG A . D 3 HOH 1 102 102 HOH HOH A . D 3 HOH 2 106 106 HOH HOH A . D 3 HOH 3 108 108 HOH HOH A . D 3 HOH 4 109 109 HOH HOH A . D 3 HOH 5 112 112 HOH HOH A . D 3 HOH 6 115 115 HOH HOH A . D 3 HOH 7 116 116 HOH HOH A . D 3 HOH 8 118 118 HOH HOH A . D 3 HOH 9 119 119 HOH HOH A . D 3 HOH 10 120 120 HOH HOH A . D 3 HOH 11 122 122 HOH HOH A . D 3 HOH 12 124 124 HOH HOH A . D 3 HOH 13 125 125 HOH HOH A . D 3 HOH 14 129 129 HOH HOH A . D 3 HOH 15 134 134 HOH HOH A . D 3 HOH 16 135 135 HOH HOH A . D 3 HOH 17 136 136 HOH HOH A . D 3 HOH 18 140 140 HOH HOH A . D 3 HOH 19 141 141 HOH HOH A . D 3 HOH 20 143 143 HOH HOH A . D 3 HOH 21 145 145 HOH HOH A . D 3 HOH 22 146 146 HOH HOH A . D 3 HOH 23 149 149 HOH HOH A . D 3 HOH 24 153 153 HOH HOH A . D 3 HOH 25 155 155 HOH HOH A . D 3 HOH 26 161 161 HOH HOH A . D 3 HOH 27 162 162 HOH HOH A . D 3 HOH 28 164 164 HOH HOH A . D 3 HOH 29 166 166 HOH HOH A . D 3 HOH 30 167 167 HOH HOH A . D 3 HOH 31 168 168 HOH HOH A . D 3 HOH 32 170 170 HOH HOH A . D 3 HOH 33 174 174 HOH HOH A . D 3 HOH 34 177 177 HOH HOH A . D 3 HOH 35 178 178 HOH HOH A . D 3 HOH 36 180 180 HOH HOH A . D 3 HOH 37 181 181 HOH HOH A . D 3 HOH 38 183 183 HOH HOH A . D 3 HOH 39 184 184 HOH HOH A . D 3 HOH 40 186 186 HOH HOH A . D 3 HOH 41 190 190 HOH HOH A . D 3 HOH 42 193 193 HOH HOH A . D 3 HOH 43 198 198 HOH HOH A . D 3 HOH 44 199 199 HOH HOH A . D 3 HOH 45 200 200 HOH HOH A . D 3 HOH 46 201 201 HOH HOH A . D 3 HOH 47 203 203 HOH HOH A . E 3 HOH 1 101 101 HOH HOH B . E 3 HOH 2 103 103 HOH HOH B . E 3 HOH 3 104 104 HOH HOH B . E 3 HOH 4 105 105 HOH HOH B . E 3 HOH 5 107 107 HOH HOH B . E 3 HOH 6 110 110 HOH HOH B . E 3 HOH 7 111 111 HOH HOH B . E 3 HOH 8 113 113 HOH HOH B . E 3 HOH 9 114 114 HOH HOH B . E 3 HOH 10 117 117 HOH HOH B . E 3 HOH 11 121 121 HOH HOH B . E 3 HOH 12 123 123 HOH HOH B . E 3 HOH 13 126 126 HOH HOH B . E 3 HOH 14 127 127 HOH HOH B . E 3 HOH 15 128 128 HOH HOH B . E 3 HOH 16 130 130 HOH HOH B . E 3 HOH 17 131 131 HOH HOH B . E 3 HOH 18 132 132 HOH HOH B . E 3 HOH 19 133 133 HOH HOH B . E 3 HOH 20 137 137 HOH HOH B . E 3 HOH 21 138 138 HOH HOH B . E 3 HOH 22 139 139 HOH HOH B . E 3 HOH 23 142 142 HOH HOH B . E 3 HOH 24 144 144 HOH HOH B . E 3 HOH 25 147 147 HOH HOH B . E 3 HOH 26 148 148 HOH HOH B . E 3 HOH 27 150 150 HOH HOH B . E 3 HOH 28 151 151 HOH HOH B . E 3 HOH 29 152 152 HOH HOH B . E 3 HOH 30 154 154 HOH HOH B . E 3 HOH 31 156 156 HOH HOH B . E 3 HOH 32 157 157 HOH HOH B . E 3 HOH 33 158 158 HOH HOH B . E 3 HOH 34 159 159 HOH HOH B . E 3 HOH 35 160 160 HOH HOH B . E 3 HOH 36 163 163 HOH HOH B . E 3 HOH 37 165 165 HOH HOH B . E 3 HOH 38 169 169 HOH HOH B . E 3 HOH 39 171 171 HOH HOH B . E 3 HOH 40 172 172 HOH HOH B . E 3 HOH 41 173 173 HOH HOH B . E 3 HOH 42 175 175 HOH HOH B . E 3 HOH 43 176 176 HOH HOH B . E 3 HOH 44 179 179 HOH HOH B . E 3 HOH 45 182 182 HOH HOH B . E 3 HOH 46 185 185 HOH HOH B . E 3 HOH 47 187 187 HOH HOH B . E 3 HOH 48 188 188 HOH HOH B . E 3 HOH 49 189 189 HOH HOH B . E 3 HOH 50 191 191 HOH HOH B . E 3 HOH 51 192 192 HOH HOH B . E 3 HOH 52 194 194 HOH HOH B . E 3 HOH 53 195 195 HOH HOH B . E 3 HOH 54 196 196 HOH HOH B . E 3 HOH 55 197 197 HOH HOH B . E 3 HOH 56 202 202 HOH HOH B . E 3 HOH 57 204 204 HOH HOH B . E 3 HOH 58 205 205 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 469D _cell.length_a 41.20 _cell.length_b 34.440 _cell.length_c 46.620 _cell.angle_alpha 90.00 _cell.angle_beta 92.40 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 469D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 469D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_percent_sol 32.64 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details ;DROPLETS CONTAINING 2MM OLIGONUCLEOTIDE, 50 MM MGCL2, 50 MM NA HEPES PH 6.2, 15% PEG 400, AGAINST 1 ML OF RESERVOIR SOLUTION CONTAINING 100 MM MGCL2, 100 MM NA HEPES PH 6.2, 30% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 'NA HEPES' ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 MGCL2 ? ? ? 1 5 2 'NA HEPES' ? ? ? 1 6 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-02-07 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9780 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 0.9780 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 469D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.70 _reflns.number_obs 7032 _reflns.number_all 7032 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.6 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 469D _refine.ls_number_reflns_obs 6412 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs 88.7 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 602 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 708 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.89 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 469D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 469D _struct.title ;CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O-(2-METHOXYETHYL)-RNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 469D _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;2'-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 469D _struct_ref.pdbx_db_accession 469D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 469D A 1 ? 12 ? 469D 1 ? 12 ? 1 12 2 1 469D B 1 ? 12 ? 469D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A C43 1 "O3'" ? ? ? 1_555 A G48 2 P ? ? A C43 1 A G48 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A G48 2 "O3'" ? ? ? 1_555 A C43 3 P ? ? A G48 2 A C43 3 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale one ? A C43 3 "O3'" ? ? ? 1_555 A G48 4 P ? ? A C43 3 A G48 4 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale4 covale both ? A G48 4 "O3'" ? ? ? 1_555 A A44 5 P ? ? A G48 4 A A44 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale both ? A A44 5 "O3'" ? ? ? 1_555 A A44 6 P ? ? A A44 5 A A44 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale both ? A A44 6 "O3'" ? ? ? 1_555 A U36 7 P ? ? A A44 6 A U36 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale7 covale one ? A U36 7 "O3'" ? ? ? 1_555 A U36 8 P ? ? A U36 7 A U36 8 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale8 covale one ? A U36 8 "O3'" ? ? ? 1_555 A C43 9 P ? ? A U36 8 A C43 9 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale9 covale one ? A C43 9 "O3'" ? ? ? 1_555 A G48 10 P ? ? A C43 9 A G48 10 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale10 covale both ? A G48 10 "O3'" ? ? ? 1_555 A C43 11 P ? ? A G48 10 A C43 11 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale11 covale one ? A C43 11 "O3'" ? ? ? 1_555 A G48 12 P ? ? A C43 11 A G48 12 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale12 covale one ? B C43 1 "O3'" ? ? ? 1_555 B G48 2 P ? ? B C43 13 B G48 14 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale13 covale both ? B G48 2 "O3'" ? ? ? 1_555 B C43 3 P ? ? B G48 14 B C43 15 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale14 covale one ? B C43 3 "O3'" ? ? ? 1_555 B G48 4 P ? ? B C43 15 B G48 16 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale15 covale both ? B G48 4 "O3'" ? ? ? 1_555 B A44 5 P ? ? B G48 16 B A44 17 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale16 covale both ? B A44 5 "O3'" ? ? ? 1_555 B A44 6 P ? ? B A44 17 B A44 18 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale17 covale both ? B A44 6 "O3'" ? ? ? 1_555 B U36 7 P ? ? B A44 18 B U36 19 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale18 covale one ? B U36 7 "O3'" ? ? ? 1_555 B U36 8 P ? ? B U36 19 B U36 20 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale19 covale one ? B U36 8 "O3'" ? ? ? 1_555 B C43 9 P ? ? B U36 20 B C43 21 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale20 covale one ? B C43 9 "O3'" ? ? ? 1_555 B G48 10 P ? ? B C43 21 B G48 22 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale21 covale both ? B G48 10 "O3'" ? ? ? 1_555 B C43 11 P ? ? B G48 22 B C43 23 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale22 covale one ? B C43 11 "O3'" ? ? ? 1_555 B G48 12 P ? ? B C43 23 B G48 24 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 100 A HOH 102 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 2_656 E HOH . O ? ? A MG 100 B HOH 101 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 B HOH 101 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 2_656 E HOH . O ? ? A MG 100 B HOH 103 1_555 ? ? ? ? ? ? ? 2.159 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 B HOH 103 1_555 ? ? ? ? ? ? ? 2.166 ? ? hydrog1 hydrog ? ? A C43 1 N3 ? ? ? 1_555 B G48 12 N1 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C43 1 N4 ? ? ? 1_555 B G48 12 O6 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C43 1 O2 ? ? ? 1_555 B G48 12 N2 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G48 2 N1 ? ? ? 1_555 B C43 11 N3 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G48 2 N2 ? ? ? 1_555 B C43 11 O2 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G48 2 O6 ? ? ? 1_555 B C43 11 N4 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C43 3 N3 ? ? ? 1_555 B G48 10 N1 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C43 3 N4 ? ? ? 1_555 B G48 10 O6 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C43 3 O2 ? ? ? 1_555 B G48 10 N2 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G48 4 N1 ? ? ? 1_555 B C43 9 N3 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G48 4 N2 ? ? ? 1_555 B C43 9 O2 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G48 4 O6 ? ? ? 1_555 B C43 9 N4 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A44 5 N1 ? ? ? 1_555 B U36 8 N3 ? ? A A44 5 B U36 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A44 5 N6 ? ? ? 1_555 B U36 8 O4 ? ? A A44 5 B U36 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A44 6 N1 ? ? ? 1_555 B U36 7 N3 ? ? A A44 6 B U36 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A44 6 N6 ? ? ? 1_555 B U36 7 O4 ? ? A A44 6 B U36 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U36 7 N3 ? ? ? 1_555 B A44 6 N1 ? ? A U36 7 B A44 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U36 7 O4 ? ? ? 1_555 B A44 6 N6 ? ? A U36 7 B A44 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U36 8 N3 ? ? ? 1_555 B A44 5 N1 ? ? A U36 8 B A44 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U36 8 O4 ? ? ? 1_555 B A44 5 N6 ? ? A U36 8 B A44 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C43 9 N3 ? ? ? 1_555 B G48 4 N1 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C43 9 N4 ? ? ? 1_555 B G48 4 O6 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C43 9 O2 ? ? ? 1_555 B G48 4 N2 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G48 10 N1 ? ? ? 1_555 B C43 3 N3 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G48 10 N2 ? ? ? 1_555 B C43 3 O2 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G48 10 O6 ? ? ? 1_555 B C43 3 N4 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C43 11 N3 ? ? ? 1_555 B G48 2 N1 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C43 11 N4 ? ? ? 1_555 B G48 2 O6 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C43 11 O2 ? ? ? 1_555 B G48 2 N2 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G48 12 N1 ? ? ? 1_555 B C43 1 N3 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G48 12 N2 ? ? ? 1_555 B C43 1 O2 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G48 12 O6 ? ? ? 1_555 B C43 1 N4 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 101 ? 1_555 84.7 ? 2 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 101 ? 1_555 84.7 ? 3 O ? E HOH . ? B HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 101 ? 1_555 0.0 ? 4 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 81.2 ? 5 O ? E HOH . ? B HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 97.9 ? 6 O ? E HOH . ? B HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 97.9 ? 7 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 81.2 ? 8 O ? E HOH . ? B HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 97.9 ? 9 O ? E HOH . ? B HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 97.9 ? 10 O ? E HOH . ? B HOH 103 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 0.0 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 102 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 102 . ? 2_656 ? 3 AC1 6 HOH E . ? HOH B 101 . ? 2_656 ? 4 AC1 6 HOH E . ? HOH B 101 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 103 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 103 . ? 2_656 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C43 1 A C43 1 ? C ? 2 A G48 2 A G48 2 ? G ? 3 A C43 3 A C43 3 ? C ? 4 A G48 4 A G48 4 ? G ? 5 A A44 5 A A44 5 ? A ? 6 A A44 6 A A44 6 ? A ? 7 A U36 7 A U36 7 ? U ? 8 A U36 8 A U36 8 ? U ? 9 A C43 9 A C43 9 ? C ? 10 A G48 10 A G48 10 ? G ? 11 A C43 11 A C43 11 ? C ? 12 A G48 12 A G48 12 ? G ? 13 B C43 1 B C43 13 ? C ? 14 B G48 2 B G48 14 ? G ? 15 B C43 3 B C43 15 ? C ? 16 B G48 4 B G48 16 ? G ? 17 B A44 5 B A44 17 ? A ? 18 B A44 6 B A44 18 ? A ? 19 B U36 7 B U36 19 ? U ? 20 B U36 8 B U36 20 ? U ? 21 B C43 9 B C43 21 ? C ? 22 B G48 10 B G48 22 ? G ? 23 B C43 11 B C43 23 ? C ? 24 B G48 12 B G48 24 ? G ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 100 ? C MG . 2 1 A HOH 190 ? D HOH . 3 1 B HOH 104 ? E HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A44 P P N N 1 A44 OP2 O N N 2 A44 OP1 O N N 3 A44 "O5'" O N N 4 A44 "C5'" C N N 5 A44 "C4'" C N R 6 A44 "O4'" O N N 7 A44 "C3'" C N R 8 A44 "O3'" O N N 9 A44 "C2'" C N R 10 A44 "O2'" O N N 11 A44 "C1'" C N R 12 A44 N9 N Y N 13 A44 C8 C Y N 14 A44 N7 N Y N 15 A44 C5 C Y N 16 A44 C6 C Y N 17 A44 N6 N N N 18 A44 N1 N Y N 19 A44 C2 C Y N 20 A44 N3 N Y N 21 A44 C4 C Y N 22 A44 "CA'" C N N 23 A44 "CD'" C N N 24 A44 "OC'" O N N 25 A44 "CB'" C N N 26 A44 OP3 O N N 27 A44 HOP2 H N N 28 A44 "H5'" H N N 29 A44 "H5''" H N N 30 A44 "H4'" H N N 31 A44 "H3'" H N N 32 A44 "HO3'" H N N 33 A44 "H2'" H N N 34 A44 "H1'" H N N 35 A44 H8 H N N 36 A44 H61 H N N 37 A44 H62 H N N 38 A44 H2 H N N 39 A44 HCA2 H N N 40 A44 HCA1 H N N 41 A44 HCD1 H N N 42 A44 HCD2 H N N 43 A44 HCD3 H N N 44 A44 HCB1 H N N 45 A44 HCB2 H N N 46 A44 HOP3 H N N 47 C43 P P N N 48 C43 OP3 O N N 49 C43 OP2 O N N 50 C43 OP1 O N N 51 C43 "O5'" O N N 52 C43 "C5'" C N N 53 C43 "C4'" C N R 54 C43 "O4'" O N N 55 C43 "C3'" C N R 56 C43 "O3'" O N N 57 C43 "C2'" C N R 58 C43 "O2'" O N N 59 C43 "C1'" C N R 60 C43 N1 N N N 61 C43 C2 C N N 62 C43 O2 O N N 63 C43 N3 N N N 64 C43 C4 C N N 65 C43 N4 N N N 66 C43 C5 C N N 67 C43 C6 C N N 68 C43 "CA'" C N N 69 C43 "CB'" C N N 70 C43 "CD'" C N N 71 C43 "OC'" O N N 72 C43 HOP3 H N N 73 C43 HOP2 H N N 74 C43 "H5'1" H N N 75 C43 "H5'2" H N N 76 C43 "H4'" H N N 77 C43 "H3'" H N N 78 C43 HA H N N 79 C43 "H2'" H N N 80 C43 "H1'" H N N 81 C43 H4N1 H N N 82 C43 H4N2 H N N 83 C43 H5 H N N 84 C43 H6 H N N 85 C43 "HA'1" H N N 86 C43 "HA'2" H N N 87 C43 "HB'1" H N N 88 C43 "HB'2" H N N 89 C43 "HD'1" H N N 90 C43 "HD'2" H N N 91 C43 "HD'3" H N N 92 G48 P P N N 93 G48 OP1 O N N 94 G48 OP3 O N N 95 G48 "O5'" O N N 96 G48 "C5'" C N N 97 G48 "C4'" C N R 98 G48 "O4'" O N N 99 G48 "C3'" C N R 100 G48 "O3'" O N N 101 G48 "C2'" C N R 102 G48 "O2'" O N N 103 G48 "C1'" C N R 104 G48 N9 N Y N 105 G48 C8 C Y N 106 G48 N7 N Y N 107 G48 C5 C Y N 108 G48 C6 C N N 109 G48 O6 O N N 110 G48 N1 N N N 111 G48 C2 C N N 112 G48 N2 N N N 113 G48 N3 N N N 114 G48 C4 C Y N 115 G48 "CA'" C N N 116 G48 "CB'" C N N 117 G48 "OC'" O N N 118 G48 "CD'" C N N 119 G48 OP2 O N N 120 G48 HOP3 H N N 121 G48 "H5'" H N N 122 G48 "H5''" H N N 123 G48 "H4'" H N N 124 G48 "H3'" H N N 125 G48 "HO3'" H N N 126 G48 "H2'" H N N 127 G48 "H1'" H N N 128 G48 H8 H N N 129 G48 H1 H N N 130 G48 H21 H N N 131 G48 H22 H N N 132 G48 HCA2 H N N 133 G48 HCA1 H N N 134 G48 HCB1 H N N 135 G48 HCB2 H N N 136 G48 HCD1 H N N 137 G48 HCD2 H N N 138 G48 HCD3 H N N 139 G48 HOP2 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 MG MG MG N N 144 U36 P P N N 145 U36 OP1 O N N 146 U36 OP2 O N N 147 U36 OP3 O N N 148 U36 "O5'" O N N 149 U36 "C5'" C N N 150 U36 "C4'" C N R 151 U36 "O4'" O N N 152 U36 "C3'" C N R 153 U36 "O3'" O N N 154 U36 "C2'" C N R 155 U36 "O2'" O N N 156 U36 "C1'" C N R 157 U36 N1 N N N 158 U36 C2 C N N 159 U36 O2 O N N 160 U36 N3 N N N 161 U36 C4 C N N 162 U36 O4 O N N 163 U36 C5 C N N 164 U36 C6 C N N 165 U36 "CA'" C N N 166 U36 "CB'" C N N 167 U36 "CD'" C N N 168 U36 "OC'" O N N 169 U36 HOP2 H N N 170 U36 HOP3 H N N 171 U36 "H5'1" H N N 172 U36 "H5'2" H N N 173 U36 "H4'" H N N 174 U36 "H3'" H N N 175 U36 HA H N N 176 U36 "H2'" H N N 177 U36 "H1'" H N N 178 U36 H3 H N N 179 U36 H5 H N N 180 U36 H6 H N N 181 U36 "HA'1" H N N 182 U36 "HA'2" H N N 183 U36 "HB'1" H N N 184 U36 "HB'2" H N N 185 U36 "HD'1" H N N 186 U36 "HD'2" H N N 187 U36 "HD'3" H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A44 C2 N1 doub Y N 1 A44 C2 N3 sing Y N 2 A44 N1 C6 sing Y N 3 A44 "CB'" "CA'" sing N N 4 A44 "CB'" "OC'" sing N N 5 A44 N3 C4 doub Y N 6 A44 C6 N6 sing N N 7 A44 C6 C5 doub Y N 8 A44 "CD'" "OC'" sing N N 9 A44 "CA'" "O2'" sing N N 10 A44 C4 C5 sing Y N 11 A44 C4 N9 sing Y N 12 A44 C5 N7 sing Y N 13 A44 "O2'" "C2'" sing N N 14 A44 "C2'" "C1'" sing N N 15 A44 "C2'" "C3'" sing N N 16 A44 N9 "C1'" sing N N 17 A44 N9 C8 sing Y N 18 A44 N7 C8 doub Y N 19 A44 "C1'" "O4'" sing N N 20 A44 "O3'" "C3'" sing N N 21 A44 "C3'" "C4'" sing N N 22 A44 "O4'" "C4'" sing N N 23 A44 "C4'" "C5'" sing N N 24 A44 "O5'" "C5'" sing N N 25 A44 "O5'" P sing N N 26 A44 OP1 P doub N N 27 A44 P OP2 sing N N 28 A44 P OP3 sing N N 29 A44 OP2 HOP2 sing N N 30 A44 "C5'" "H5'" sing N N 31 A44 "C5'" "H5''" sing N N 32 A44 "C4'" "H4'" sing N N 33 A44 "C3'" "H3'" sing N N 34 A44 "O3'" "HO3'" sing N N 35 A44 "C2'" "H2'" sing N N 36 A44 "C1'" "H1'" sing N N 37 A44 C8 H8 sing N N 38 A44 N6 H61 sing N N 39 A44 N6 H62 sing N N 40 A44 C2 H2 sing N N 41 A44 "CA'" HCA2 sing N N 42 A44 "CA'" HCA1 sing N N 43 A44 "CD'" HCD1 sing N N 44 A44 "CD'" HCD2 sing N N 45 A44 "CD'" HCD3 sing N N 46 A44 "CB'" HCB1 sing N N 47 A44 "CB'" HCB2 sing N N 48 A44 OP3 HOP3 sing N N 49 C43 P OP3 sing N N 50 C43 P OP2 sing N N 51 C43 P OP1 doub N N 52 C43 P "O5'" sing N N 53 C43 OP3 HOP3 sing N N 54 C43 OP2 HOP2 sing N N 55 C43 "O5'" "C5'" sing N N 56 C43 "C5'" "C4'" sing N N 57 C43 "C5'" "H5'1" sing N N 58 C43 "C5'" "H5'2" sing N N 59 C43 "C4'" "O4'" sing N N 60 C43 "C4'" "C3'" sing N N 61 C43 "C4'" "H4'" sing N N 62 C43 "O4'" "C1'" sing N N 63 C43 "C3'" "O3'" sing N N 64 C43 "C3'" "C2'" sing N N 65 C43 "C3'" "H3'" sing N N 66 C43 "O3'" HA sing N N 67 C43 "C2'" "O2'" sing N N 68 C43 "C2'" "C1'" sing N N 69 C43 "C2'" "H2'" sing N N 70 C43 "O2'" "CA'" sing N N 71 C43 "C1'" N1 sing N N 72 C43 "C1'" "H1'" sing N N 73 C43 N1 C2 sing N N 74 C43 N1 C6 sing N N 75 C43 C2 O2 doub N N 76 C43 C2 N3 sing N N 77 C43 N3 C4 doub N N 78 C43 C4 N4 sing N N 79 C43 C4 C5 sing N N 80 C43 N4 H4N1 sing N N 81 C43 N4 H4N2 sing N N 82 C43 C5 C6 doub N N 83 C43 C5 H5 sing N N 84 C43 C6 H6 sing N N 85 C43 "CA'" "CB'" sing N N 86 C43 "CA'" "HA'1" sing N N 87 C43 "CA'" "HA'2" sing N N 88 C43 "CB'" "OC'" sing N N 89 C43 "CB'" "HB'1" sing N N 90 C43 "CB'" "HB'2" sing N N 91 C43 "CD'" "OC'" sing N N 92 C43 "CD'" "HD'1" sing N N 93 C43 "CD'" "HD'2" sing N N 94 C43 "CD'" "HD'3" sing N N 95 G48 OP1 P doub N N 96 G48 P "O5'" sing N N 97 G48 P OP3 sing N N 98 G48 "C5'" "O5'" sing N N 99 G48 "C5'" "C4'" sing N N 100 G48 "C4'" "O4'" sing N N 101 G48 "C4'" "C3'" sing N N 102 G48 "O4'" "C1'" sing N N 103 G48 "O3'" "C3'" sing N N 104 G48 "C3'" "C2'" sing N N 105 G48 "C1'" "C2'" sing N N 106 G48 "C1'" N9 sing N N 107 G48 "O2'" "C2'" sing N N 108 G48 "O2'" "CA'" sing N N 109 G48 "CD'" "OC'" sing N N 110 G48 C8 N9 sing Y N 111 G48 C8 N7 doub Y N 112 G48 "CB'" "OC'" sing N N 113 G48 "CB'" "CA'" sing N N 114 G48 N9 C4 sing Y N 115 G48 N7 C5 sing Y N 116 G48 C4 C5 doub Y N 117 G48 C4 N3 sing N N 118 G48 C5 C6 sing N N 119 G48 N3 C2 doub N N 120 G48 C6 O6 doub N N 121 G48 C6 N1 sing N N 122 G48 C2 N1 sing N N 123 G48 C2 N2 sing N N 124 G48 P OP2 sing N N 125 G48 OP3 HOP3 sing N N 126 G48 "C5'" "H5'" sing N N 127 G48 "C5'" "H5''" sing N N 128 G48 "C4'" "H4'" sing N N 129 G48 "C3'" "H3'" sing N N 130 G48 "O3'" "HO3'" sing N N 131 G48 "C2'" "H2'" sing N N 132 G48 "C1'" "H1'" sing N N 133 G48 C8 H8 sing N N 134 G48 N1 H1 sing N N 135 G48 N2 H21 sing N N 136 G48 N2 H22 sing N N 137 G48 "CA'" HCA2 sing N N 138 G48 "CA'" HCA1 sing N N 139 G48 "CB'" HCB1 sing N N 140 G48 "CB'" HCB2 sing N N 141 G48 "CD'" HCD1 sing N N 142 G48 "CD'" HCD2 sing N N 143 G48 "CD'" HCD3 sing N N 144 G48 OP2 HOP2 sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 U36 P OP1 doub N N 148 U36 P OP2 sing N N 149 U36 P OP3 sing N N 150 U36 P "O5'" sing N N 151 U36 OP2 HOP2 sing N N 152 U36 OP3 HOP3 sing N N 153 U36 "O5'" "C5'" sing N N 154 U36 "C5'" "C4'" sing N N 155 U36 "C5'" "H5'1" sing N N 156 U36 "C5'" "H5'2" sing N N 157 U36 "C4'" "O4'" sing N N 158 U36 "C4'" "C3'" sing N N 159 U36 "C4'" "H4'" sing N N 160 U36 "O4'" "C1'" sing N N 161 U36 "C3'" "O3'" sing N N 162 U36 "C3'" "C2'" sing N N 163 U36 "C3'" "H3'" sing N N 164 U36 "O3'" HA sing N N 165 U36 "C2'" "O2'" sing N N 166 U36 "C2'" "C1'" sing N N 167 U36 "C2'" "H2'" sing N N 168 U36 "O2'" "CA'" sing N N 169 U36 "C1'" N1 sing N N 170 U36 "C1'" "H1'" sing N N 171 U36 N1 C2 sing N N 172 U36 N1 C6 sing N N 173 U36 C2 O2 doub N N 174 U36 C2 N3 sing N N 175 U36 N3 C4 sing N N 176 U36 N3 H3 sing N N 177 U36 C4 O4 doub N N 178 U36 C4 C5 sing N N 179 U36 C5 C6 doub N N 180 U36 C5 H5 sing N N 181 U36 C6 H6 sing N N 182 U36 "CA'" "CB'" sing N N 183 U36 "CA'" "HA'1" sing N N 184 U36 "CA'" "HA'2" sing N N 185 U36 "CB'" "OC'" sing N N 186 U36 "CB'" "HB'1" sing N N 187 U36 "CB'" "HB'2" sing N N 188 U36 "CD'" "OC'" sing N N 189 U36 "CD'" "HD'1" sing N N 190 U36 "CD'" "HD'2" sing N N 191 U36 "CD'" "HD'3" sing N N 192 # _ndb_struct_conf_na.entry_id 469D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C43 1 1_555 B G48 12 1_555 0.363 -0.134 0.192 5.104 -12.702 1.484 1 A_C431:G4824_B A 1 ? B 24 ? 19 1 1 A G48 2 1_555 B C43 11 1_555 -0.332 -0.273 0.201 0.833 -13.443 2.087 2 A_G482:C4323_B A 2 ? B 23 ? 19 1 1 A C43 3 1_555 B G48 10 1_555 0.381 -0.059 0.150 -4.430 -10.601 2.979 3 A_C433:G4822_B A 3 ? B 22 ? 19 1 1 A G48 4 1_555 B C43 9 1_555 -0.380 -0.038 -0.204 -8.517 -19.430 3.931 4 A_G484:C4321_B A 4 ? B 21 ? 19 1 1 A A44 5 1_555 B U36 8 1_555 -0.050 -0.193 -0.275 -12.233 -5.894 -0.909 5 A_A445:U3620_B A 5 ? B 20 ? 20 1 1 A A44 6 1_555 B U36 7 1_555 0.369 -0.110 -0.101 -1.534 -7.153 0.738 6 A_A446:U3619_B A 6 ? B 19 ? 20 1 1 A U36 7 1_555 B A44 6 1_555 -0.065 -0.194 0.110 1.319 -13.791 6.688 7 A_U367:A4418_B A 7 ? B 18 ? 20 1 1 A U36 8 1_555 B A44 5 1_555 -0.135 -0.132 -0.136 9.325 -6.788 1.589 8 A_U368:A4417_B A 8 ? B 17 ? 20 1 1 A C43 9 1_555 B G48 4 1_555 0.383 -0.064 0.007 2.655 -13.814 2.546 9 A_C439:G4816_B A 9 ? B 16 ? 19 1 1 A G48 10 1_555 B C43 3 1_555 -0.226 -0.171 0.123 -0.873 -11.055 -0.458 10 A_G4810:C4315_B A 10 ? B 15 ? 19 1 1 A C43 11 1_555 B G48 2 1_555 0.580 -0.220 -0.016 0.682 -13.518 1.265 11 A_C4311:G4814_B A 11 ? B 14 ? 19 1 1 A G48 12 1_555 B C43 1 1_555 -0.376 -0.164 0.264 -2.413 -21.131 0.797 12 A_G4812:C4313_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C43 1 1_555 B G48 12 1_555 A G48 2 1_555 B C43 11 1_555 -0.746 -2.071 2.904 -2.765 17.087 29.773 -5.483 0.944 1.579 30.253 4.896 34.340 1 AA_C431G482:C4323G4824_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A G48 2 1_555 B C43 11 1_555 A C43 3 1_555 B G48 10 1_555 -0.273 -1.366 3.378 -2.730 9.048 34.844 -3.471 0.060 2.955 14.776 4.459 36.065 2 AA_G482C433:G4822C4323_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A C43 3 1_555 B G48 10 1_555 A G48 4 1_555 B C43 9 1_555 0.286 -1.840 3.190 2.861 15.824 25.218 -6.294 -0.064 1.772 32.382 -5.855 29.838 3 AA_C433G484:C4321G4822_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A G48 4 1_555 B C43 9 1_555 A A44 5 1_555 B U36 8 1_555 -0.180 -1.711 3.278 -1.593 15.254 32.672 -4.710 0.088 2.286 25.442 2.657 36.004 4 AA_G484A445:U3620C4321_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A A44 5 1_555 B U36 8 1_555 A A44 6 1_555 B U36 7 1_555 -0.087 -1.705 3.114 0.046 9.115 28.507 -4.955 0.176 2.463 17.939 -0.091 29.900 5 AA_A445A446:U3619U3620_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A A44 6 1_555 B U36 7 1_555 A U36 7 1_555 B A44 6 1_555 0.367 -1.077 3.267 -0.548 12.182 25.754 -4.783 -0.863 2.502 25.583 1.152 28.450 6 AA_A446U367:A4418U3619_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A U36 7 1_555 B A44 6 1_555 A U36 8 1_555 B A44 5 1_555 -0.698 -1.433 3.021 -1.111 11.866 30.328 -4.319 1.080 2.334 21.659 2.029 32.534 7 AA_U367U368:A4417A4418_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A U36 8 1_555 B A44 5 1_555 A C43 9 1_555 B G48 4 1_555 0.237 -1.954 3.419 -0.092 16.298 31.664 -5.371 -0.401 2.184 27.693 0.156 35.517 8 AA_U368C439:G4816A4417_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A C43 9 1_555 B G48 4 1_555 A G48 10 1_555 B C43 3 1_555 -0.179 -1.701 3.136 -0.292 13.670 28.165 -5.350 0.286 2.106 26.225 0.560 31.248 9 AA_C439G4810:C4315G4816_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G48 10 1_555 B C43 3 1_555 A C43 11 1_555 B G48 2 1_555 0.320 -1.387 3.221 3.125 8.799 33.332 -3.606 -0.086 2.793 14.977 -5.320 34.580 10 AA_G4810C4311:G4814C4315_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C43 11 1_555 B G48 2 1_555 A G48 12 1_555 B C43 1 1_555 0.652 -1.749 3.043 2.190 13.867 29.959 -5.020 -0.841 2.092 25.160 -3.973 33.017 11 AA_C4311G4812:C4313G4814_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 469D _atom_sites.fract_transf_matrix[1][1] 0.024272 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001017 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029036 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021469 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_