data_4A45 # _entry.id 4A45 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A45 PDBE EBI-49934 WWPDB D_1290049934 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VCC unspecified 'FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS' PDB 2VC9 unspecified 'FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN' PDB 2VCB unspecified 'FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH PUGNAC' PDB 2VCA unspecified 'FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH BETA-N-ACETYL-D-GLUCOSAMINE' PDB 4A42 unspecified 'CPGH89CBM32-6 PRODUCED BY CLOSTRIDIUM PERFRINGENS' PDB 4A41 unspecified 'CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALACTOSE' PDB 4A3Z unspecified 'CPGH89CBM32-4 (SELENO-METHIONINE LABELED) PRODUCED BY CLOSTRIDIUM PERFRINGENS' PDB 4A40 unspecified 'CPGH89CBM32-4, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GLCNAC-ALPHA-1,4-GALACTOSE' PDB 4A44 unspecified 'CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH THE TN ANTIGEN' PDB 4A43 unspecified 'CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALNAC' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A45 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-10-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ficko-Blean, E.' 1 'Stuart, C.P.' 2 'Suits, M.D.' 3 'Cid, M.' 4 'Tessier, M.' 5 'Woods, R.J.' 6 'Boraston, A.B.' 7 # _citation.id primary _citation.title 'Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first 33524 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22479408 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PONE.0033524 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ficko-Blean, E.' 1 ? primary 'Stuart, C.P.' 2 ? primary 'Suits, M.D.' 3 ? primary 'Cid, M.' 4 ? primary 'Tessier, M.' 5 ? primary 'Woods, R.J.' 6 ? primary 'Boraston, A.B.' 7 ? # _cell.entry_id 4A45 _cell.length_a 33.803 _cell.length_b 58.631 _cell.length_c 70.658 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A45 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN' 17435.328 1 3.2.1.50 ? 'CBM32-5, RESIDUES 1356-1493' ? 2 branched man '2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose' 383.349 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 151 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GH89_CBM32-5 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMASALPQGNMKATATSEHPDVGNEGLAKFAIDGKENTIWHTKYNPVEELPQSITLELGGS YEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKFNSTKATHVKLVALEGVGGFASAAELNVF A ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASALPQGNMKATATSEHPDVGNEGLAKFAIDGKENTIWHTKYNPVEELPQSITLELGGS YEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKFNSTKATHVKLVALEGVGGFASAAELNVF A ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 LEU n 1 26 PRO n 1 27 GLN n 1 28 GLY n 1 29 ASN n 1 30 MET n 1 31 LYS n 1 32 ALA n 1 33 THR n 1 34 ALA n 1 35 THR n 1 36 SER n 1 37 GLU n 1 38 HIS n 1 39 PRO n 1 40 ASP n 1 41 VAL n 1 42 GLY n 1 43 ASN n 1 44 GLU n 1 45 GLY n 1 46 LEU n 1 47 ALA n 1 48 LYS n 1 49 PHE n 1 50 ALA n 1 51 ILE n 1 52 ASP n 1 53 GLY n 1 54 LYS n 1 55 GLU n 1 56 ASN n 1 57 THR n 1 58 ILE n 1 59 TRP n 1 60 HIS n 1 61 THR n 1 62 LYS n 1 63 TYR n 1 64 ASN n 1 65 PRO n 1 66 VAL n 1 67 GLU n 1 68 GLU n 1 69 LEU n 1 70 PRO n 1 71 GLN n 1 72 SER n 1 73 ILE n 1 74 THR n 1 75 LEU n 1 76 GLU n 1 77 LEU n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 TYR n 1 82 GLU n 1 83 ILE n 1 84 ASN n 1 85 LYS n 1 86 PHE n 1 87 THR n 1 88 TYR n 1 89 LEU n 1 90 PRO n 1 91 ARG n 1 92 SER n 1 93 GLY n 1 94 ALA n 1 95 LYS n 1 96 ASN n 1 97 GLY n 1 98 ASN n 1 99 ILE n 1 100 THR n 1 101 LYS n 1 102 TYR n 1 103 GLU n 1 104 LEU n 1 105 HIS n 1 106 VAL n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 GLY n 1 111 ASN n 1 112 ASN n 1 113 PHE n 1 114 ARG n 1 115 LYS n 1 116 ILE n 1 117 SER n 1 118 GLU n 1 119 GLY n 1 120 ASN n 1 121 TRP n 1 122 ASP n 1 123 ASP n 1 124 SER n 1 125 GLY n 1 126 SER n 1 127 LEU n 1 128 LYS n 1 129 THR n 1 130 LEU n 1 131 LYS n 1 132 PHE n 1 133 ASN n 1 134 SER n 1 135 THR n 1 136 LYS n 1 137 ALA n 1 138 THR n 1 139 HIS n 1 140 VAL n 1 141 LYS n 1 142 LEU n 1 143 VAL n 1 144 ALA n 1 145 LEU n 1 146 GLU n 1 147 GLY n 1 148 VAL n 1 149 GLY n 1 150 GLY n 1 151 PHE n 1 152 ALA n 1 153 SER n 1 154 ALA n 1 155 ALA n 1 156 GLU n 1 157 LEU n 1 158 ASN n 1 159 VAL n 1 160 PHE n 1 161 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CLOSTRIDIUM PERFRINGENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1502 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0TST1_CLOP1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q0TST1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4A45 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0TST1 _struct_ref_seq.db_align_beg 1356 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1493 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1356 _struct_ref_seq.pdbx_auth_seq_align_end 1493 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A45 MET A 1 ? UNP Q0TST1 ? ? 'expression tag' 1333 1 1 4A45 GLY A 2 ? UNP Q0TST1 ? ? 'expression tag' 1334 2 1 4A45 SER A 3 ? UNP Q0TST1 ? ? 'expression tag' 1335 3 1 4A45 SER A 4 ? UNP Q0TST1 ? ? 'expression tag' 1336 4 1 4A45 HIS A 5 ? UNP Q0TST1 ? ? 'expression tag' 1337 5 1 4A45 HIS A 6 ? UNP Q0TST1 ? ? 'expression tag' 1338 6 1 4A45 HIS A 7 ? UNP Q0TST1 ? ? 'expression tag' 1339 7 1 4A45 HIS A 8 ? UNP Q0TST1 ? ? 'expression tag' 1340 8 1 4A45 HIS A 9 ? UNP Q0TST1 ? ? 'expression tag' 1341 9 1 4A45 HIS A 10 ? UNP Q0TST1 ? ? 'expression tag' 1342 10 1 4A45 SER A 11 ? UNP Q0TST1 ? ? 'expression tag' 1343 11 1 4A45 SER A 12 ? UNP Q0TST1 ? ? 'expression tag' 1344 12 1 4A45 GLY A 13 ? UNP Q0TST1 ? ? 'expression tag' 1345 13 1 4A45 LEU A 14 ? UNP Q0TST1 ? ? 'expression tag' 1346 14 1 4A45 VAL A 15 ? UNP Q0TST1 ? ? 'expression tag' 1347 15 1 4A45 PRO A 16 ? UNP Q0TST1 ? ? 'expression tag' 1348 16 1 4A45 ARG A 17 ? UNP Q0TST1 ? ? 'expression tag' 1349 17 1 4A45 GLY A 18 ? UNP Q0TST1 ? ? 'expression tag' 1350 18 1 4A45 SER A 19 ? UNP Q0TST1 ? ? 'expression tag' 1351 19 1 4A45 HIS A 20 ? UNP Q0TST1 ? ? 'expression tag' 1352 20 1 4A45 MET A 21 ? UNP Q0TST1 ? ? 'expression tag' 1353 21 1 4A45 ALA A 22 ? UNP Q0TST1 ? ? 'expression tag' 1354 22 1 4A45 SER A 23 ? UNP Q0TST1 ? ? 'expression tag' 1355 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A45 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.74 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU-MSC R-AXIS IV++' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A45 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.75 _reflns.number_obs 14448 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A45 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13707 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.13 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 97.91 _refine.ls_R_factor_obs 0.20089 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19855 _refine.ls_R_factor_R_free 0.24571 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 739 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 26.391 _refine.aniso_B[1][1] 1.29 _refine.aniso_B[2][2] -0.17 _refine.aniso_B[3][3] -1.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.133 _refine.overall_SU_ML 0.093 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.877 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1063 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 1242 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 45.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1112 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.716 1.975 ? 1507 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 10.254 5.000 ? 138 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.631 25.918 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.404 15.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.336 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 833 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 532 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 738 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.170 0.200 ? 123 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.411 0.200 ? 5 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.266 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.130 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.453 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.970 1.500 ? 686 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.709 2.000 ? 1095 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.274 3.000 ? 440 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.577 4.500 ? 412 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.750 _refine_ls_shell.d_res_low 1.796 _refine_ls_shell.number_reflns_R_work 994 _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.percent_reflns_obs 97.78 _refine_ls_shell.R_factor_R_free 0.389 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4A45 _struct.title 'CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose' _struct.pdbx_descriptor 'ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN (E.C.3.2.1.50)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A45 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, FAMILY 89 GLYCOSIDE HYDROLASE, FAMILY 32 CARBOHYDRATE-BINDING MODULE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 26 ? MET A 30 ? PRO A 1358 MET A 1362 5 ? 5 HELX_P HELX_P2 2 LEU A 46 ? ASP A 52 ? LEU A 1378 ASP A 1384 5 ? 7 HELX_P HELX_P3 3 GLY A 149 ? PHE A 151 ? GLY A 1481 PHE A 1483 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GAL . O3 ? ? ? 1_555 B NGA . C1 ? ? B GAL 1 B NGA 2 1_555 ? ? ? ? ? ? ? 1.449 ? ? metalc1 metalc ? ? A PHE 49 O ? ? ? 1_555 C CA . CA ? ? A PHE 1381 A CA 2496 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc2 metalc ? ? A ASP 52 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 1384 A CA 2496 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc3 metalc ? ? A LYS 54 O ? ? ? 1_555 C CA . CA ? ? A LYS 1386 A CA 2496 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc4 metalc ? ? A THR 57 OG1 ? ? ? 1_555 C CA . CA ? ? A THR 1389 A CA 2496 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc5 metalc ? ? A THR 57 O ? ? ? 1_555 C CA . CA ? ? A THR 1389 A CA 2496 1_555 ? ? ? ? ? ? ? 2.528 ? ? metalc6 metalc ? ? A GLU 76 OE1 ? ? ? 1_555 D NA . NA ? ? A GLU 1408 A NA 2497 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc7 metalc ? ? A GLU 82 OE2 ? ? ? 4_454 D NA . NA ? ? A GLU 1414 A NA 2497 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc8 metalc ? ? A GLU 82 OE1 ? ? ? 4_454 D NA . NA ? ? A GLU 1414 A NA 2497 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc9 metalc ? ? A HIS 139 NE2 ? ? ? 1_555 D NA . NA ? ? A HIS 1471 A NA 2497 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc10 metalc ? ? A ALA 155 O ? ? ? 1_555 C CA . CA ? ? A ALA 1487 A CA 2496 1_555 ? ? ? ? ? ? ? 2.532 ? ? metalc11 metalc ? ? A GLU 156 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 1488 A CA 2496 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc12 metalc ? ? E HOH . O A ? ? 1_555 D NA . NA ? ? A HOH 2065 A NA 2497 1_555 ? ? ? ? ? ? ? 2.659 ? ? metalc13 metalc ? ? E HOH . O B ? ? 1_555 D NA . NA ? ? A HOH 2065 A NA 2497 1_555 ? ? ? ? ? ? ? 2.837 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 44 A . ? GLU 1376 A GLY 45 A ? GLY 1377 A 1 0.71 2 ASN 64 A . ? ASN 1396 A PRO 65 A ? PRO 1397 A 1 -15.14 3 LEU 69 A . ? LEU 1401 A PRO 70 A ? PRO 1402 A 1 3.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 5 ? AC ? 5 ? AD ? 2 ? AE ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AD 1 2 ? parallel AE 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 31 ? ALA A 34 ? LYS A 1363 ALA A 1366 AA 2 GLN A 71 ? LEU A 89 ? GLN A 1403 LEU A 1421 AB 1 ARG A 114 ? ASN A 120 ? ARG A 1446 ASN A 1452 AB 2 ILE A 99 ? SER A 107 ? ILE A 1431 SER A 1439 AB 3 LYS A 128 ? GLY A 147 ? LYS A 1460 GLY A 1479 AB 4 GLN A 71 ? LEU A 89 ? GLN A 1403 LEU A 1421 AB 5 GLU A 156 ? PHE A 160 ? GLU A 1488 PHE A 1492 AC 1 ARG A 114 ? ASN A 120 ? ARG A 1446 ASN A 1452 AC 2 ILE A 99 ? SER A 107 ? ILE A 1431 SER A 1439 AC 3 LYS A 128 ? GLY A 147 ? LYS A 1460 GLY A 1479 AC 4 GLN A 71 ? LEU A 89 ? GLN A 1403 LEU A 1421 AC 5 LYS A 31 ? ALA A 34 ? LYS A 1363 ALA A 1366 AD 1 GLU A 156 ? PHE A 160 ? GLU A 1488 PHE A 1492 AD 2 GLN A 71 ? LEU A 89 ? GLN A 1403 LEU A 1421 AE 1 TRP A 59 ? HIS A 60 ? TRP A 1391 HIS A 1392 AE 2 SER A 153 ? ALA A 154 ? SER A 1485 ALA A 1486 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 33 ? N THR A 1365 O THR A 74 ? O THR A 1406 AB 1 2 N GLY A 119 ? N GLY A 1451 O TYR A 102 ? O TYR A 1434 AB 2 3 O SER A 107 ? O SER A 1439 N THR A 138 ? N THR A 1470 AB 3 4 N ALA A 144 ? N ALA A 1476 O GLN A 71 ? O GLN A 1403 AB 4 5 N LEU A 89 ? N LEU A 1421 O GLU A 156 ? O GLU A 1488 AC 1 2 N GLY A 119 ? N GLY A 1451 O TYR A 102 ? O TYR A 1434 AC 2 3 O SER A 107 ? O SER A 1439 N THR A 138 ? N THR A 1470 AC 3 4 N ALA A 144 ? N ALA A 1476 O GLN A 71 ? O GLN A 1403 AC 4 5 N GLU A 76 ? N GLU A 1408 O LYS A 31 ? O LYS A 1363 AD 1 2 O PHE A 160 ? O PHE A 1492 N ASN A 84 ? N ASN A 1416 AE 1 2 N TRP A 59 ? N TRP A 1391 O ALA A 154 ? O ALA A 1486 # _database_PDB_matrix.entry_id 4A45 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A45 _atom_sites.fract_transf_matrix[1][1] 0.029583 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014153 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1333 ? ? ? A . n A 1 2 GLY 2 1334 ? ? ? A . n A 1 3 SER 3 1335 ? ? ? A . n A 1 4 SER 4 1336 ? ? ? A . n A 1 5 HIS 5 1337 ? ? ? A . n A 1 6 HIS 6 1338 ? ? ? A . n A 1 7 HIS 7 1339 ? ? ? A . n A 1 8 HIS 8 1340 ? ? ? A . n A 1 9 HIS 9 1341 ? ? ? A . n A 1 10 HIS 10 1342 ? ? ? A . n A 1 11 SER 11 1343 ? ? ? A . n A 1 12 SER 12 1344 ? ? ? A . n A 1 13 GLY 13 1345 ? ? ? A . n A 1 14 LEU 14 1346 ? ? ? A . n A 1 15 VAL 15 1347 ? ? ? A . n A 1 16 PRO 16 1348 ? ? ? A . n A 1 17 ARG 17 1349 ? ? ? A . n A 1 18 GLY 18 1350 ? ? ? A . n A 1 19 SER 19 1351 ? ? ? A . n A 1 20 HIS 20 1352 ? ? ? A . n A 1 21 MET 21 1353 ? ? ? A . n A 1 22 ALA 22 1354 ? ? ? A . n A 1 23 SER 23 1355 1355 SER SER A . n A 1 24 ALA 24 1356 1356 ALA ALA A . n A 1 25 LEU 25 1357 1357 LEU LEU A . n A 1 26 PRO 26 1358 1358 PRO PRO A . n A 1 27 GLN 27 1359 1359 GLN GLN A . n A 1 28 GLY 28 1360 1360 GLY GLY A . n A 1 29 ASN 29 1361 1361 ASN ASN A . n A 1 30 MET 30 1362 1362 MET MET A . n A 1 31 LYS 31 1363 1363 LYS LYS A . n A 1 32 ALA 32 1364 1364 ALA ALA A . n A 1 33 THR 33 1365 1365 THR THR A . n A 1 34 ALA 34 1366 1366 ALA ALA A . n A 1 35 THR 35 1367 1367 THR THR A . n A 1 36 SER 36 1368 1368 SER SER A . n A 1 37 GLU 37 1369 1369 GLU GLU A . n A 1 38 HIS 38 1370 1370 HIS HIS A . n A 1 39 PRO 39 1371 1371 PRO PRO A . n A 1 40 ASP 40 1372 1372 ASP ASP A . n A 1 41 VAL 41 1373 1373 VAL VAL A . n A 1 42 GLY 42 1374 1374 GLY GLY A . n A 1 43 ASN 43 1375 1375 ASN ASN A . n A 1 44 GLU 44 1376 1376 GLU GLU A . n A 1 45 GLY 45 1377 1377 GLY GLY A . n A 1 46 LEU 46 1378 1378 LEU LEU A . n A 1 47 ALA 47 1379 1379 ALA ALA A . n A 1 48 LYS 48 1380 1380 LYS LYS A . n A 1 49 PHE 49 1381 1381 PHE PHE A . n A 1 50 ALA 50 1382 1382 ALA ALA A . n A 1 51 ILE 51 1383 1383 ILE ILE A . n A 1 52 ASP 52 1384 1384 ASP ASP A . n A 1 53 GLY 53 1385 1385 GLY GLY A . n A 1 54 LYS 54 1386 1386 LYS LYS A . n A 1 55 GLU 55 1387 1387 GLU GLU A . n A 1 56 ASN 56 1388 1388 ASN ASN A . n A 1 57 THR 57 1389 1389 THR THR A . n A 1 58 ILE 58 1390 1390 ILE ILE A . n A 1 59 TRP 59 1391 1391 TRP TRP A . n A 1 60 HIS 60 1392 1392 HIS HIS A . n A 1 61 THR 61 1393 1393 THR THR A . n A 1 62 LYS 62 1394 1394 LYS LYS A . n A 1 63 TYR 63 1395 1395 TYR TYR A . n A 1 64 ASN 64 1396 1396 ASN ASN A . n A 1 65 PRO 65 1397 1397 PRO PRO A . n A 1 66 VAL 66 1398 1398 VAL VAL A . n A 1 67 GLU 67 1399 1399 GLU GLU A . n A 1 68 GLU 68 1400 1400 GLU GLU A . n A 1 69 LEU 69 1401 1401 LEU LEU A . n A 1 70 PRO 70 1402 1402 PRO PRO A . n A 1 71 GLN 71 1403 1403 GLN GLN A . n A 1 72 SER 72 1404 1404 SER SER A . n A 1 73 ILE 73 1405 1405 ILE ILE A . n A 1 74 THR 74 1406 1406 THR THR A . n A 1 75 LEU 75 1407 1407 LEU LEU A . n A 1 76 GLU 76 1408 1408 GLU GLU A . n A 1 77 LEU 77 1409 1409 LEU LEU A . n A 1 78 GLY 78 1410 1410 GLY GLY A . n A 1 79 GLY 79 1411 1411 GLY GLY A . n A 1 80 SER 80 1412 1412 SER SER A . n A 1 81 TYR 81 1413 1413 TYR TYR A . n A 1 82 GLU 82 1414 1414 GLU GLU A . n A 1 83 ILE 83 1415 1415 ILE ILE A . n A 1 84 ASN 84 1416 1416 ASN ASN A . n A 1 85 LYS 85 1417 1417 LYS LYS A . n A 1 86 PHE 86 1418 1418 PHE PHE A . n A 1 87 THR 87 1419 1419 THR THR A . n A 1 88 TYR 88 1420 1420 TYR TYR A . n A 1 89 LEU 89 1421 1421 LEU LEU A . n A 1 90 PRO 90 1422 1422 PRO PRO A . n A 1 91 ARG 91 1423 1423 ARG ARG A . n A 1 92 SER 92 1424 1424 SER SER A . n A 1 93 GLY 93 1425 1425 GLY GLY A . n A 1 94 ALA 94 1426 1426 ALA ALA A . n A 1 95 LYS 95 1427 1427 LYS LYS A . n A 1 96 ASN 96 1428 1428 ASN ASN A . n A 1 97 GLY 97 1429 1429 GLY GLY A . n A 1 98 ASN 98 1430 1430 ASN ASN A . n A 1 99 ILE 99 1431 1431 ILE ILE A . n A 1 100 THR 100 1432 1432 THR THR A . n A 1 101 LYS 101 1433 1433 LYS LYS A . n A 1 102 TYR 102 1434 1434 TYR TYR A . n A 1 103 GLU 103 1435 1435 GLU GLU A . n A 1 104 LEU 104 1436 1436 LEU LEU A . n A 1 105 HIS 105 1437 1437 HIS HIS A . n A 1 106 VAL 106 1438 1438 VAL VAL A . n A 1 107 SER 107 1439 1439 SER SER A . n A 1 108 GLU 108 1440 1440 GLU GLU A . n A 1 109 ASP 109 1441 1441 ASP ASP A . n A 1 110 GLY 110 1442 1442 GLY GLY A . n A 1 111 ASN 111 1443 1443 ASN ASN A . n A 1 112 ASN 112 1444 1444 ASN ASN A . n A 1 113 PHE 113 1445 1445 PHE PHE A . n A 1 114 ARG 114 1446 1446 ARG ARG A . n A 1 115 LYS 115 1447 1447 LYS LYS A . n A 1 116 ILE 116 1448 1448 ILE ILE A . n A 1 117 SER 117 1449 1449 SER SER A . n A 1 118 GLU 118 1450 1450 GLU GLU A . n A 1 119 GLY 119 1451 1451 GLY GLY A . n A 1 120 ASN 120 1452 1452 ASN ASN A . n A 1 121 TRP 121 1453 1453 TRP TRP A . n A 1 122 ASP 122 1454 1454 ASP ASP A . n A 1 123 ASP 123 1455 1455 ASP ASP A . n A 1 124 SER 124 1456 1456 SER SER A . n A 1 125 GLY 125 1457 1457 GLY GLY A . n A 1 126 SER 126 1458 1458 SER SER A . n A 1 127 LEU 127 1459 1459 LEU LEU A . n A 1 128 LYS 128 1460 1460 LYS LYS A . n A 1 129 THR 129 1461 1461 THR THR A . n A 1 130 LEU 130 1462 1462 LEU LEU A . n A 1 131 LYS 131 1463 1463 LYS LYS A . n A 1 132 PHE 132 1464 1464 PHE PHE A . n A 1 133 ASN 133 1465 1465 ASN ASN A . n A 1 134 SER 134 1466 1466 SER SER A . n A 1 135 THR 135 1467 1467 THR THR A . n A 1 136 LYS 136 1468 1468 LYS LYS A . n A 1 137 ALA 137 1469 1469 ALA ALA A . n A 1 138 THR 138 1470 1470 THR THR A . n A 1 139 HIS 139 1471 1471 HIS HIS A . n A 1 140 VAL 140 1472 1472 VAL VAL A . n A 1 141 LYS 141 1473 1473 LYS LYS A . n A 1 142 LEU 142 1474 1474 LEU LEU A . n A 1 143 VAL 143 1475 1475 VAL VAL A . n A 1 144 ALA 144 1476 1476 ALA ALA A . n A 1 145 LEU 145 1477 1477 LEU LEU A . n A 1 146 GLU 146 1478 1478 GLU GLU A . n A 1 147 GLY 147 1479 1479 GLY GLY A . n A 1 148 VAL 148 1480 1480 VAL VAL A . n A 1 149 GLY 149 1481 1481 GLY GLY A . n A 1 150 GLY 150 1482 1482 GLY GLY A . n A 1 151 PHE 151 1483 1483 PHE PHE A . n A 1 152 ALA 152 1484 1484 ALA ALA A . n A 1 153 SER 153 1485 1485 SER SER A . n A 1 154 ALA 154 1486 1486 ALA ALA A . n A 1 155 ALA 155 1487 1487 ALA ALA A . n A 1 156 GLU 156 1488 1488 GLU GLU A . n A 1 157 LEU 157 1489 1489 LEU LEU A . n A 1 158 ASN 158 1490 1490 ASN ASN A . n A 1 159 VAL 159 1491 1491 VAL VAL A . n A 1 160 PHE 160 1492 1492 PHE PHE A . n A 1 161 ALA 161 1493 1493 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 2496 2496 CA CA A . D 4 NA 1 2497 2497 NA NA A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . E 5 HOH 82 2082 2082 HOH HOH A . E 5 HOH 83 2083 2083 HOH HOH A . E 5 HOH 84 2084 2084 HOH HOH A . E 5 HOH 85 2085 2085 HOH HOH A . E 5 HOH 86 2086 2086 HOH HOH A . E 5 HOH 87 2087 2087 HOH HOH A . E 5 HOH 88 2088 2088 HOH HOH A . E 5 HOH 89 2089 2089 HOH HOH A . E 5 HOH 90 2090 2090 HOH HOH A . E 5 HOH 91 2091 2091 HOH HOH A . E 5 HOH 92 2092 2092 HOH HOH A . E 5 HOH 93 2093 2093 HOH HOH A . E 5 HOH 94 2094 2094 HOH HOH A . E 5 HOH 95 2095 2095 HOH HOH A . E 5 HOH 96 2096 2096 HOH HOH A . E 5 HOH 97 2097 2097 HOH HOH A . E 5 HOH 98 2098 2098 HOH HOH A . E 5 HOH 99 2099 2099 HOH HOH A . E 5 HOH 100 2100 2100 HOH HOH A . E 5 HOH 101 2101 2101 HOH HOH A . E 5 HOH 102 2102 2102 HOH HOH A . E 5 HOH 103 2103 2103 HOH HOH A . E 5 HOH 104 2104 2104 HOH HOH A . E 5 HOH 105 2105 2105 HOH HOH A . E 5 HOH 106 2106 2106 HOH HOH A . E 5 HOH 107 2107 2107 HOH HOH A . E 5 HOH 108 2108 2108 HOH HOH A . E 5 HOH 109 2109 2109 HOH HOH A . E 5 HOH 110 2110 2110 HOH HOH A . E 5 HOH 111 2111 2111 HOH HOH A . E 5 HOH 112 2112 2112 HOH HOH A . E 5 HOH 113 2113 2113 HOH HOH A . E 5 HOH 114 2114 2114 HOH HOH A . E 5 HOH 115 2115 2115 HOH HOH A . E 5 HOH 116 2116 2116 HOH HOH A . E 5 HOH 117 2117 2117 HOH HOH A . E 5 HOH 118 2118 2118 HOH HOH A . E 5 HOH 119 2119 2119 HOH HOH A . E 5 HOH 120 2120 2120 HOH HOH A . E 5 HOH 121 2121 2121 HOH HOH A . E 5 HOH 122 2122 2122 HOH HOH A . E 5 HOH 123 2123 2123 HOH HOH A . E 5 HOH 124 2124 2124 HOH HOH A . E 5 HOH 125 2125 2125 HOH HOH A . E 5 HOH 126 2126 2126 HOH HOH A . E 5 HOH 127 2127 2127 HOH HOH A . E 5 HOH 128 2128 2128 HOH HOH A . E 5 HOH 129 2129 2129 HOH HOH A . E 5 HOH 130 2130 2130 HOH HOH A . E 5 HOH 131 2131 2131 HOH HOH A . E 5 HOH 132 2132 2132 HOH HOH A . E 5 HOH 133 2133 2133 HOH HOH A . E 5 HOH 134 2134 2134 HOH HOH A . E 5 HOH 135 2135 2135 HOH HOH A . E 5 HOH 136 2136 2136 HOH HOH A . E 5 HOH 137 2137 2137 HOH HOH A . E 5 HOH 138 2138 2138 HOH HOH A . E 5 HOH 139 2139 2139 HOH HOH A . E 5 HOH 140 2140 2140 HOH HOH A . E 5 HOH 141 2141 2141 HOH HOH A . E 5 HOH 142 2142 2142 HOH HOH A . E 5 HOH 143 2143 2143 HOH HOH A . E 5 HOH 144 2144 2144 HOH HOH A . E 5 HOH 145 2145 2145 HOH HOH A . E 5 HOH 146 2146 2146 HOH HOH A . E 5 HOH 147 2147 2147 HOH HOH A . E 5 HOH 148 2148 2148 HOH HOH A . E 5 HOH 149 2149 2149 HOH HOH A . E 5 HOH 150 2150 2150 HOH HOH A . E 5 HOH 151 2151 2151 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 80.5 ? 2 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A LYS 54 ? A LYS 1386 ? 1_555 174.4 ? 3 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A LYS 54 ? A LYS 1386 ? 1_555 94.5 ? 4 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OG1 ? A THR 57 ? A THR 1389 ? 1_555 92.9 ? 5 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OG1 ? A THR 57 ? A THR 1389 ? 1_555 70.8 ? 6 O ? A LYS 54 ? A LYS 1386 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OG1 ? A THR 57 ? A THR 1389 ? 1_555 83.0 ? 7 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A THR 57 ? A THR 1389 ? 1_555 92.1 ? 8 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A THR 57 ? A THR 1389 ? 1_555 140.4 ? 9 O ? A LYS 54 ? A LYS 1386 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A THR 57 ? A THR 1389 ? 1_555 90.2 ? 10 OG1 ? A THR 57 ? A THR 1389 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A THR 57 ? A THR 1389 ? 1_555 70.8 ? 11 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A ALA 155 ? A ALA 1487 ? 1_555 82.9 ? 12 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A ALA 155 ? A ALA 1487 ? 1_555 137.9 ? 13 O ? A LYS 54 ? A LYS 1386 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A ALA 155 ? A ALA 1487 ? 1_555 102.6 ? 14 OG1 ? A THR 57 ? A THR 1389 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A ALA 155 ? A ALA 1487 ? 1_555 148.7 ? 15 O ? A THR 57 ? A THR 1389 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 O ? A ALA 155 ? A ALA 1487 ? 1_555 78.3 ? 16 O ? A PHE 49 ? A PHE 1381 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 98.5 ? 17 OD1 ? A ASP 52 ? A ASP 1384 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 72.4 ? 18 O ? A LYS 54 ? A LYS 1386 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 82.2 ? 19 OG1 ? A THR 57 ? A THR 1389 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 138.9 ? 20 O ? A THR 57 ? A THR 1389 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 147.0 ? 21 O ? A ALA 155 ? A ALA 1487 ? 1_555 CA ? C CA . ? A CA 2496 ? 1_555 OE2 ? A GLU 156 ? A GLU 1488 ? 1_555 72.2 ? 22 OE1 ? A GLU 76 ? A GLU 1408 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 OE2 ? A GLU 82 ? A GLU 1414 ? 4_454 104.6 ? 23 OE1 ? A GLU 76 ? A GLU 1408 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 OE1 ? A GLU 82 ? A GLU 1414 ? 4_454 82.4 ? 24 OE2 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 OE1 ? A GLU 82 ? A GLU 1414 ? 4_454 46.6 ? 25 OE1 ? A GLU 76 ? A GLU 1408 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 NE2 ? A HIS 139 ? A HIS 1471 ? 1_555 114.8 ? 26 OE2 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 NE2 ? A HIS 139 ? A HIS 1471 ? 1_555 107.6 ? 27 OE1 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 NE2 ? A HIS 139 ? A HIS 1471 ? 1_555 81.0 ? 28 OE1 ? A GLU 76 ? A GLU 1408 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 O A E HOH . ? A HOH 2065 ? 1_555 92.8 ? 29 OE2 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 O A E HOH . ? A HOH 2065 ? 1_555 146.9 ? 30 OE1 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 O A E HOH . ? A HOH 2065 ? 1_555 166.3 ? 31 NE2 ? A HIS 139 ? A HIS 1471 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 O A E HOH . ? A HOH 2065 ? 1_555 89.5 ? 32 OE1 ? A GLU 76 ? A GLU 1408 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 O B E HOH . ? A HOH 2065 ? 1_555 105.1 ? 33 OE2 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 O B E HOH . ? A HOH 2065 ? 1_555 106.6 ? 34 OE1 ? A GLU 82 ? A GLU 1414 ? 4_454 NA ? D NA . ? A NA 2497 ? 1_555 O B E HOH . ? A HOH 2065 ? 1_555 152.9 ? 35 NE2 ? A HIS 139 ? A HIS 1471 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 O B E HOH . ? A HOH 2065 ? 1_555 117.2 ? 36 O A E HOH . ? A HOH 2065 ? 1_555 NA ? D NA . ? A NA 2497 ? 1_555 O B E HOH . ? A HOH 2065 ? 1_555 40.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2012-04-18 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_database_status 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' pdbx_struct_conn_angle 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_database_status.status_code_sf' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 30 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 31 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 32 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 33 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 34 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 35 3 'Structure model' '_pdbx_struct_conn_angle.value' 36 3 'Structure model' '_struct_conn.pdbx_dist_value' 37 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 38 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 39 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 40 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 41 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 42 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 43 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 44 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 45 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 46 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 47 3 'Structure model' '_struct_conn.ptnr1_symmetry' 48 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 49 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 50 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 51 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 52 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 53 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 54 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 55 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 d*TREK 'data reduction' . ? 2 d*TREK 'data scaling' . ? 3 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 1414 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 1414 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.186 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.066 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2151 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.82 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1333 ? A MET 1 2 1 Y 1 A GLY 1334 ? A GLY 2 3 1 Y 1 A SER 1335 ? A SER 3 4 1 Y 1 A SER 1336 ? A SER 4 5 1 Y 1 A HIS 1337 ? A HIS 5 6 1 Y 1 A HIS 1338 ? A HIS 6 7 1 Y 1 A HIS 1339 ? A HIS 7 8 1 Y 1 A HIS 1340 ? A HIS 8 9 1 Y 1 A HIS 1341 ? A HIS 9 10 1 Y 1 A HIS 1342 ? A HIS 10 11 1 Y 1 A SER 1343 ? A SER 11 12 1 Y 1 A SER 1344 ? A SER 12 13 1 Y 1 A GLY 1345 ? A GLY 13 14 1 Y 1 A LEU 1346 ? A LEU 14 15 1 Y 1 A VAL 1347 ? A VAL 15 16 1 Y 1 A PRO 1348 ? A PRO 16 17 1 Y 1 A ARG 1349 ? A ARG 17 18 1 Y 1 A GLY 1350 ? A GLY 18 19 1 Y 1 A SER 1351 ? A SER 19 20 1 Y 1 A HIS 1352 ? A HIS 20 21 1 Y 1 A MET 1353 ? A MET 21 22 1 Y 1 A ALA 1354 ? A ALA 22 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GAL 1 B GAL 1 A GAL 2495 n B 2 NGA 2 B NGA 2 A NGA 2494 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpNAcb1-3DGalpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2112h-1b_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Galp]{[(3+1)][b-D-GalpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NGA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GAL _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GAL 1 n 2 NGA 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 'SODIUM ION' NA 5 water HOH #