data_4A4I # _entry.id 4A4I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A4I PDBE EBI-49989 WWPDB D_1290049989 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4A65 unspecified 'CRYSTAL STRUCTURE OF THE THIOREDOXIN REDUCTASE FROM ENTAMOEBA HISTOLYTICA WITH AUCN' PDB 4A76 unspecified 'THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEPTATHYMIDINE' PDB 4ALP unspecified 'THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXAURIDINE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A4I _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-10-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mayr, F.' 1 'Schuetz, A.' 2 'Doege, N.' 3 'Heinemann, U.' 4 # _citation.id primary _citation.title 'The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 7492 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22570413 _citation.pdbx_database_id_DOI 10.1093/NAR/GKS355 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mayr, F.' 1 primary 'Schutz, A.' 2 primary 'Doge, N.' 3 primary 'Heinemann, U.' 4 # _cell.entry_id 4A4I _cell.length_a 46.181 _cell.length_b 62.477 _cell.length_c 77.318 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4I _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN LIN-28 HOMOLOG B' 9880.287 2 ? ? 'COLD SHOCK DOMAIN, RESIDUES 24-111' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 208 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LIN28B, LIN-28B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTG PGGSPCLGSE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTG PGGSPCLGSE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 SER n 1 5 GLN n 1 6 VAL n 1 7 LEU n 1 8 ARG n 1 9 GLY n 1 10 THR n 1 11 GLY n 1 12 HIS n 1 13 CYS n 1 14 LYS n 1 15 TRP n 1 16 PHE n 1 17 ASN n 1 18 VAL n 1 19 ARG n 1 20 MET n 1 21 GLY n 1 22 PHE n 1 23 GLY n 1 24 PHE n 1 25 ILE n 1 26 SER n 1 27 MET n 1 28 ILE n 1 29 ASN n 1 30 ARG n 1 31 GLU n 1 32 GLY n 1 33 SER n 1 34 PRO n 1 35 LEU n 1 36 ASP n 1 37 ILE n 1 38 PRO n 1 39 VAL n 1 40 ASP n 1 41 VAL n 1 42 PHE n 1 43 VAL n 1 44 HIS n 1 45 GLN n 1 46 SER n 1 47 LYS n 1 48 LEU n 1 49 PHE n 1 50 MET n 1 51 GLU n 1 52 GLY n 1 53 PHE n 1 54 ARG n 1 55 SER n 1 56 LEU n 1 57 LYS n 1 58 GLU n 1 59 GLY n 1 60 GLU n 1 61 PRO n 1 62 VAL n 1 63 GLU n 1 64 PHE n 1 65 THR n 1 66 PHE n 1 67 LYS n 1 68 LYS n 1 69 SER n 1 70 SER n 1 71 LYS n 1 72 GLY n 1 73 LEU n 1 74 GLU n 1 75 SER n 1 76 ILE n 1 77 ARG n 1 78 VAL n 1 79 THR n 1 80 GLY n 1 81 PRO n 1 82 GLY n 1 83 GLY n 1 84 SER n 1 85 PRO n 1 86 CYS n 1 87 LEU n 1 88 GLY n 1 89 SER n 1 90 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA PHAGE-RESISTANT' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQLINKH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LN28B_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q6ZN17 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4A4I A 3 ? 90 ? Q6ZN17 24 ? 111 ? 24 111 2 1 4A4I B 3 ? 90 ? Q6ZN17 24 ? 111 ? 24 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A4I GLY A 1 ? UNP Q6ZN17 ? ? 'expression tag' 22 1 1 4A4I SER A 2 ? UNP Q6ZN17 ? ? 'expression tag' 23 2 2 4A4I GLY B 1 ? UNP Q6ZN17 ? ? 'expression tag' 22 3 2 4A4I SER B 2 ? UNP Q6ZN17 ? ? 'expression tag' 23 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A4I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.3 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2 M AMMONIUM SULFATE, 0.2 M NACL, 0.1 M MES PH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-07-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.91841 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A4I _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.59 _reflns.d_resolution_high 1.95 _reflns.number_obs 16277 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 94.4 _reflns_shell.Rmerge_I_obs 0.24 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.10 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A4I _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15419 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.59 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 96.55 _refine.ls_R_factor_obs 0.18367 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18096 _refine.ls_R_factor_R_free 0.23464 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 828 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.B_iso_mean 23.592 _refine.aniso_B[1][1] 2.83 _refine.aniso_B[2][2] -1.51 _refine.aniso_B[3][3] -1.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.149 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.094 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.037 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1308 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 208 _refine_hist.number_atoms_total 1527 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 48.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.019 ? 1375 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.768 1.972 ? 1845 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.727 5.000 ? 175 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.775 21.930 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.354 15.000 ? 246 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.043 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.143 0.200 ? 191 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 1036 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.953 _refine_ls_shell.d_res_low 2.003 _refine_ls_shell.number_reflns_R_work 1005 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 93.86 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4A4I _struct.title 'Crystal structure of the human Lin28b cold shock domain' _struct.pdbx_descriptor 'PROTEIN LIN-28 HOMOLOG B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A4I _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 80 ? SER A 84 ? GLY A 101 SER A 105 5 ? 5 HELX_P HELX_P2 2 GLY B 80 ? SER B 84 ? GLY B 101 SER B 105 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? BA ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 7 ? ASN A 17 ? LEU A 28 ASN A 38 AA 2 PRO A 61 ? LYS A 67 ? PRO A 82 LYS A 88 AA 3 GLU A 74 ? THR A 79 ? GLU A 95 THR A 100 AA 4 SER A 33 ? HIS A 44 ? SER A 54 HIS A 65 AA 5 PHE A 22 ? ARG A 30 ? PHE A 43 ARG A 51 AA 6 LEU A 7 ? ASN A 17 ? LEU A 28 ASN A 38 BA 1 LEU B 7 ? ASN B 17 ? LEU B 28 ASN B 38 BA 2 PRO B 61 ? SER B 69 ? PRO B 82 SER B 90 BA 3 GLY B 72 ? THR B 79 ? GLY B 93 THR B 100 BA 4 SER B 33 ? HIS B 44 ? SER B 54 HIS B 65 BA 5 PHE B 22 ? ARG B 30 ? PHE B 43 ARG B 51 BA 6 LEU B 7 ? ASN B 17 ? LEU B 28 ASN B 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 11 ? N GLY A 32 O VAL A 62 ? O VAL A 83 AA 2 3 N LYS A 67 ? N LYS A 88 O GLU A 74 ? O GLU A 95 AA 3 4 N SER A 75 ? N SER A 96 O PHE A 42 ? O PHE A 63 AA 4 5 N VAL A 43 ? N VAL A 64 O GLY A 23 ? O GLY A 44 AA 5 6 N ILE A 28 ? N ILE A 49 O THR A 10 ? O THR A 31 BA 1 2 N GLY B 11 ? N GLY B 32 O VAL B 62 ? O VAL B 83 BA 2 3 N SER B 69 ? N SER B 90 O GLY B 72 ? O GLY B 93 BA 3 4 N SER B 75 ? N SER B 96 O PHE B 42 ? O PHE B 63 BA 4 5 N VAL B 43 ? N VAL B 64 O GLY B 23 ? O GLY B 44 BA 5 6 N ILE B 28 ? N ILE B 49 O THR B 10 ? O THR B 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL B 1112' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 B 1113' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 SER B 69 ? SER B 90 . ? 1_555 ? 2 AC1 4 SER B 70 ? SER B 91 . ? 1_555 ? 3 AC1 4 HOH F . ? HOH B 2079 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH B 2082 . ? 1_555 ? 5 AC2 5 LYS A 71 ? LYS A 92 . ? 3_755 ? 6 AC2 5 PHE B 16 ? PHE B 37 . ? 1_555 ? 7 AC2 5 ASN B 17 ? ASN B 38 . ? 1_555 ? 8 AC2 5 VAL B 18 ? VAL B 39 . ? 1_555 ? 9 AC2 5 ARG B 19 ? ARG B 40 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A4I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A4I _atom_sites.fract_transf_matrix[1][1] 0.021654 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016006 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012934 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 22 ? ? ? A . n A 1 2 SER 2 23 ? ? ? A . n A 1 3 GLU 3 24 ? ? ? A . n A 1 4 SER 4 25 ? ? ? A . n A 1 5 GLN 5 26 ? ? ? A . n A 1 6 VAL 6 27 27 VAL VAL A . n A 1 7 LEU 7 28 28 LEU LEU A . n A 1 8 ARG 8 29 29 ARG ARG A . n A 1 9 GLY 9 30 30 GLY GLY A . n A 1 10 THR 10 31 31 THR THR A . n A 1 11 GLY 11 32 32 GLY GLY A . n A 1 12 HIS 12 33 33 HIS HIS A . n A 1 13 CYS 13 34 34 CYS CYS A . n A 1 14 LYS 14 35 35 LYS LYS A . n A 1 15 TRP 15 36 36 TRP TRP A . n A 1 16 PHE 16 37 37 PHE PHE A . n A 1 17 ASN 17 38 38 ASN ASN A . n A 1 18 VAL 18 39 39 VAL VAL A . n A 1 19 ARG 19 40 40 ARG ARG A . n A 1 20 MET 20 41 41 MET MET A . n A 1 21 GLY 21 42 42 GLY GLY A . n A 1 22 PHE 22 43 43 PHE PHE A . n A 1 23 GLY 23 44 44 GLY GLY A . n A 1 24 PHE 24 45 45 PHE PHE A . n A 1 25 ILE 25 46 46 ILE ILE A . n A 1 26 SER 26 47 47 SER SER A . n A 1 27 MET 27 48 48 MET MET A . n A 1 28 ILE 28 49 49 ILE ILE A . n A 1 29 ASN 29 50 50 ASN ASN A . n A 1 30 ARG 30 51 51 ARG ARG A . n A 1 31 GLU 31 52 52 GLU GLU A . n A 1 32 GLY 32 53 53 GLY GLY A . n A 1 33 SER 33 54 54 SER SER A . n A 1 34 PRO 34 55 55 PRO PRO A . n A 1 35 LEU 35 56 56 LEU LEU A . n A 1 36 ASP 36 57 57 ASP ASP A . n A 1 37 ILE 37 58 58 ILE ILE A . n A 1 38 PRO 38 59 59 PRO PRO A . n A 1 39 VAL 39 60 60 VAL VAL A . n A 1 40 ASP 40 61 61 ASP ASP A . n A 1 41 VAL 41 62 62 VAL VAL A . n A 1 42 PHE 42 63 63 PHE PHE A . n A 1 43 VAL 43 64 64 VAL VAL A . n A 1 44 HIS 44 65 65 HIS HIS A . n A 1 45 GLN 45 66 66 GLN GLN A . n A 1 46 SER 46 67 67 SER SER A . n A 1 47 LYS 47 68 68 LYS LYS A . n A 1 48 LEU 48 69 69 LEU LEU A . n A 1 49 PHE 49 70 70 PHE PHE A . n A 1 50 MET 50 71 71 MET MET A . n A 1 51 GLU 51 72 72 GLU GLU A . n A 1 52 GLY 52 73 73 GLY GLY A . n A 1 53 PHE 53 74 74 PHE PHE A . n A 1 54 ARG 54 75 75 ARG ARG A . n A 1 55 SER 55 76 76 SER SER A . n A 1 56 LEU 56 77 77 LEU LEU A . n A 1 57 LYS 57 78 78 LYS LYS A . n A 1 58 GLU 58 79 79 GLU GLU A . n A 1 59 GLY 59 80 80 GLY GLY A . n A 1 60 GLU 60 81 81 GLU GLU A . n A 1 61 PRO 61 82 82 PRO PRO A . n A 1 62 VAL 62 83 83 VAL VAL A . n A 1 63 GLU 63 84 84 GLU GLU A . n A 1 64 PHE 64 85 85 PHE PHE A . n A 1 65 THR 65 86 86 THR THR A . n A 1 66 PHE 66 87 87 PHE PHE A . n A 1 67 LYS 67 88 88 LYS LYS A . n A 1 68 LYS 68 89 89 LYS LYS A . n A 1 69 SER 69 90 90 SER SER A . n A 1 70 SER 70 91 91 SER SER A . n A 1 71 LYS 71 92 92 LYS LYS A . n A 1 72 GLY 72 93 93 GLY GLY A . n A 1 73 LEU 73 94 94 LEU LEU A . n A 1 74 GLU 74 95 95 GLU GLU A . n A 1 75 SER 75 96 96 SER SER A . n A 1 76 ILE 76 97 97 ILE ILE A . n A 1 77 ARG 77 98 98 ARG ARG A . n A 1 78 VAL 78 99 99 VAL VAL A . n A 1 79 THR 79 100 100 THR THR A . n A 1 80 GLY 80 101 101 GLY GLY A . n A 1 81 PRO 81 102 102 PRO PRO A . n A 1 82 GLY 82 103 103 GLY GLY A . n A 1 83 GLY 83 104 104 GLY GLY A . n A 1 84 SER 84 105 105 SER SER A . n A 1 85 PRO 85 106 106 PRO PRO A . n A 1 86 CYS 86 107 107 CYS CYS A . n A 1 87 LEU 87 108 108 LEU LEU A . n A 1 88 GLY 88 109 109 GLY GLY A . n A 1 89 SER 89 110 110 SER SER A . n A 1 90 GLU 90 111 ? ? ? A . n B 1 1 GLY 1 22 ? ? ? B . n B 1 2 SER 2 23 ? ? ? B . n B 1 3 GLU 3 24 ? ? ? B . n B 1 4 SER 4 25 ? ? ? B . n B 1 5 GLN 5 26 ? ? ? B . n B 1 6 VAL 6 27 27 VAL VAL B . n B 1 7 LEU 7 28 28 LEU LEU B . n B 1 8 ARG 8 29 29 ARG ARG B . n B 1 9 GLY 9 30 30 GLY GLY B . n B 1 10 THR 10 31 31 THR THR B . n B 1 11 GLY 11 32 32 GLY GLY B . n B 1 12 HIS 12 33 33 HIS HIS B . n B 1 13 CYS 13 34 34 CYS CYS B . n B 1 14 LYS 14 35 35 LYS LYS B . n B 1 15 TRP 15 36 36 TRP TRP B . n B 1 16 PHE 16 37 37 PHE PHE B . n B 1 17 ASN 17 38 38 ASN ASN B . n B 1 18 VAL 18 39 39 VAL VAL B . n B 1 19 ARG 19 40 40 ARG ARG B . n B 1 20 MET 20 41 41 MET MET B . n B 1 21 GLY 21 42 42 GLY GLY B . n B 1 22 PHE 22 43 43 PHE PHE B . n B 1 23 GLY 23 44 44 GLY GLY B . n B 1 24 PHE 24 45 45 PHE PHE B . n B 1 25 ILE 25 46 46 ILE ILE B . n B 1 26 SER 26 47 47 SER SER B . n B 1 27 MET 27 48 48 MET MET B . n B 1 28 ILE 28 49 49 ILE ILE B . n B 1 29 ASN 29 50 50 ASN ASN B . n B 1 30 ARG 30 51 51 ARG ARG B . n B 1 31 GLU 31 52 52 GLU GLU B . n B 1 32 GLY 32 53 53 GLY GLY B . n B 1 33 SER 33 54 54 SER SER B . n B 1 34 PRO 34 55 55 PRO PRO B . n B 1 35 LEU 35 56 56 LEU LEU B . n B 1 36 ASP 36 57 57 ASP ASP B . n B 1 37 ILE 37 58 58 ILE ILE B . n B 1 38 PRO 38 59 59 PRO PRO B . n B 1 39 VAL 39 60 60 VAL VAL B . n B 1 40 ASP 40 61 61 ASP ASP B . n B 1 41 VAL 41 62 62 VAL VAL B . n B 1 42 PHE 42 63 63 PHE PHE B . n B 1 43 VAL 43 64 64 VAL VAL B . n B 1 44 HIS 44 65 65 HIS HIS B . n B 1 45 GLN 45 66 66 GLN GLN B . n B 1 46 SER 46 67 67 SER SER B . n B 1 47 LYS 47 68 68 LYS LYS B . n B 1 48 LEU 48 69 69 LEU LEU B . n B 1 49 PHE 49 70 70 PHE PHE B . n B 1 50 MET 50 71 71 MET MET B . n B 1 51 GLU 51 72 72 GLU GLU B . n B 1 52 GLY 52 73 73 GLY GLY B . n B 1 53 PHE 53 74 74 PHE PHE B . n B 1 54 ARG 54 75 75 ARG ARG B . n B 1 55 SER 55 76 76 SER SER B . n B 1 56 LEU 56 77 77 LEU LEU B . n B 1 57 LYS 57 78 78 LYS LYS B . n B 1 58 GLU 58 79 79 GLU GLU B . n B 1 59 GLY 59 80 80 GLY GLY B . n B 1 60 GLU 60 81 81 GLU GLU B . n B 1 61 PRO 61 82 82 PRO PRO B . n B 1 62 VAL 62 83 83 VAL VAL B . n B 1 63 GLU 63 84 84 GLU GLU B . n B 1 64 PHE 64 85 85 PHE PHE B . n B 1 65 THR 65 86 86 THR THR B . n B 1 66 PHE 66 87 87 PHE PHE B . n B 1 67 LYS 67 88 88 LYS LYS B . n B 1 68 LYS 68 89 89 LYS LYS B . n B 1 69 SER 69 90 90 SER SER B . n B 1 70 SER 70 91 91 SER SER B . n B 1 71 LYS 71 92 92 LYS LYS B . n B 1 72 GLY 72 93 93 GLY GLY B . n B 1 73 LEU 73 94 94 LEU LEU B . n B 1 74 GLU 74 95 95 GLU GLU B . n B 1 75 SER 75 96 96 SER SER B . n B 1 76 ILE 76 97 97 ILE ILE B . n B 1 77 ARG 77 98 98 ARG ARG B . n B 1 78 VAL 78 99 99 VAL VAL B . n B 1 79 THR 79 100 100 THR THR B . n B 1 80 GLY 80 101 101 GLY GLY B . n B 1 81 PRO 81 102 102 PRO PRO B . n B 1 82 GLY 82 103 103 GLY GLY B . n B 1 83 GLY 83 104 104 GLY GLY B . n B 1 84 SER 84 105 105 SER SER B . n B 1 85 PRO 85 106 106 PRO PRO B . n B 1 86 CYS 86 107 107 CYS CYS B . n B 1 87 LEU 87 108 108 LEU LEU B . n B 1 88 GLY 88 109 109 GLY GLY B . n B 1 89 SER 89 110 110 SER SER B . n B 1 90 GLU 90 111 111 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 1112 1112 GOL GOL B . D 3 SO4 1 1113 1113 SO4 SO4 B . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . F 4 HOH 8 2008 2008 HOH HOH B . F 4 HOH 9 2009 2009 HOH HOH B . F 4 HOH 10 2010 2010 HOH HOH B . F 4 HOH 11 2011 2011 HOH HOH B . F 4 HOH 12 2012 2012 HOH HOH B . F 4 HOH 13 2013 2013 HOH HOH B . F 4 HOH 14 2014 2014 HOH HOH B . F 4 HOH 15 2015 2015 HOH HOH B . F 4 HOH 16 2016 2016 HOH HOH B . F 4 HOH 17 2017 2017 HOH HOH B . F 4 HOH 18 2018 2018 HOH HOH B . F 4 HOH 19 2019 2019 HOH HOH B . F 4 HOH 20 2020 2020 HOH HOH B . F 4 HOH 21 2021 2021 HOH HOH B . F 4 HOH 22 2022 2022 HOH HOH B . F 4 HOH 23 2023 2023 HOH HOH B . F 4 HOH 24 2024 2024 HOH HOH B . F 4 HOH 25 2025 2025 HOH HOH B . F 4 HOH 26 2026 2026 HOH HOH B . F 4 HOH 27 2027 2027 HOH HOH B . F 4 HOH 28 2028 2028 HOH HOH B . F 4 HOH 29 2029 2029 HOH HOH B . F 4 HOH 30 2030 2030 HOH HOH B . F 4 HOH 31 2031 2031 HOH HOH B . F 4 HOH 32 2032 2032 HOH HOH B . F 4 HOH 33 2033 2033 HOH HOH B . F 4 HOH 34 2034 2034 HOH HOH B . F 4 HOH 35 2035 2035 HOH HOH B . F 4 HOH 36 2036 2036 HOH HOH B . F 4 HOH 37 2037 2037 HOH HOH B . F 4 HOH 38 2038 2038 HOH HOH B . F 4 HOH 39 2039 2039 HOH HOH B . F 4 HOH 40 2040 2040 HOH HOH B . F 4 HOH 41 2041 2041 HOH HOH B . F 4 HOH 42 2042 2042 HOH HOH B . F 4 HOH 43 2043 2043 HOH HOH B . F 4 HOH 44 2044 2044 HOH HOH B . F 4 HOH 45 2045 2045 HOH HOH B . F 4 HOH 46 2046 2046 HOH HOH B . F 4 HOH 47 2047 2047 HOH HOH B . F 4 HOH 48 2048 2048 HOH HOH B . F 4 HOH 49 2049 2049 HOH HOH B . F 4 HOH 50 2050 2050 HOH HOH B . F 4 HOH 51 2051 2051 HOH HOH B . F 4 HOH 52 2052 2052 HOH HOH B . F 4 HOH 53 2053 2053 HOH HOH B . F 4 HOH 54 2054 2054 HOH HOH B . F 4 HOH 55 2055 2055 HOH HOH B . F 4 HOH 56 2056 2056 HOH HOH B . F 4 HOH 57 2057 2057 HOH HOH B . F 4 HOH 58 2058 2058 HOH HOH B . F 4 HOH 59 2059 2059 HOH HOH B . F 4 HOH 60 2060 2060 HOH HOH B . F 4 HOH 61 2061 2061 HOH HOH B . F 4 HOH 62 2062 2062 HOH HOH B . F 4 HOH 63 2063 2063 HOH HOH B . F 4 HOH 64 2064 2064 HOH HOH B . F 4 HOH 65 2065 2065 HOH HOH B . F 4 HOH 66 2066 2066 HOH HOH B . F 4 HOH 67 2067 2067 HOH HOH B . F 4 HOH 68 2068 2068 HOH HOH B . F 4 HOH 69 2069 2069 HOH HOH B . F 4 HOH 70 2070 2070 HOH HOH B . F 4 HOH 71 2071 2071 HOH HOH B . F 4 HOH 72 2072 2072 HOH HOH B . F 4 HOH 73 2073 2073 HOH HOH B . F 4 HOH 74 2074 2074 HOH HOH B . F 4 HOH 75 2075 2075 HOH HOH B . F 4 HOH 76 2076 2076 HOH HOH B . F 4 HOH 77 2077 2077 HOH HOH B . F 4 HOH 78 2078 2078 HOH HOH B . F 4 HOH 79 2079 2079 HOH HOH B . F 4 HOH 80 2080 2080 HOH HOH B . F 4 HOH 81 2081 2081 HOH HOH B . F 4 HOH 82 2082 2082 HOH HOH B . F 4 HOH 83 2083 2083 HOH HOH B . F 4 HOH 84 2084 2084 HOH HOH B . F 4 HOH 85 2085 2085 HOH HOH B . F 4 HOH 86 2086 2086 HOH HOH B . F 4 HOH 87 2087 2087 HOH HOH B . F 4 HOH 88 2088 2088 HOH HOH B . F 4 HOH 89 2089 2089 HOH HOH B . F 4 HOH 90 2090 2090 HOH HOH B . F 4 HOH 91 2091 2091 HOH HOH B . F 4 HOH 92 2092 2092 HOH HOH B . F 4 HOH 93 2093 2093 HOH HOH B . F 4 HOH 94 2094 2094 HOH HOH B . F 4 HOH 95 2095 2095 HOH HOH B . F 4 HOH 96 2096 2096 HOH HOH B . F 4 HOH 97 2097 2097 HOH HOH B . F 4 HOH 98 2098 2098 HOH HOH B . F 4 HOH 99 2099 2099 HOH HOH B . F 4 HOH 100 2100 2100 HOH HOH B . F 4 HOH 101 2101 2101 HOH HOH B . F 4 HOH 102 2102 2102 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E 2 1 B,C,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-08 2 'Structure model' 1 1 2012-09-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 33.6122 32.2087 6.2335 0.0629 0.0181 0.0225 -0.0055 -0.0158 -0.0148 0.5106 0.5761 1.3224 -0.4088 0.2418 -0.1003 0.0782 -0.0176 0.0262 -0.0550 -0.0513 0.0300 0.0780 -0.0073 -0.0269 'X-RAY DIFFRACTION' 2 ? refined 45.2693 53.2214 17.0022 0.0624 0.0229 0.0166 0.0072 0.0091 -0.0123 0.4443 1.1449 0.3995 0.0579 0.3896 0.2003 0.0444 0.0013 -0.0168 0.0256 -0.0335 -0.0536 0.0080 -0.0284 -0.0109 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 27 ? ? A 110 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 27 ? ? B 111 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 PHASER phasing . ? 2 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A HIS 33 ? ? CD2 A HIS 33 ? ? 1.416 1.354 0.062 0.009 N 2 1 CE2 A TRP 36 ? ? CD2 A TRP 36 ? ? 1.484 1.409 0.075 0.012 N 3 1 CG B HIS 33 ? ? CD2 B HIS 33 ? ? 1.416 1.354 0.062 0.009 N 4 1 CE2 B TRP 36 ? ? CD2 B TRP 36 ? ? 1.481 1.409 0.072 0.012 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 22 ? A GLY 1 2 1 Y 1 A SER 23 ? A SER 2 3 1 Y 1 A GLU 24 ? A GLU 3 4 1 Y 1 A SER 25 ? A SER 4 5 1 Y 1 A GLN 26 ? A GLN 5 6 1 Y 1 A GLU 111 ? A GLU 90 7 1 Y 1 B GLY 22 ? B GLY 1 8 1 Y 1 B SER 23 ? B SER 2 9 1 Y 1 B GLU 24 ? B GLU 3 10 1 Y 1 B SER 25 ? B SER 4 11 1 Y 1 B GLN 26 ? B GLN 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 water HOH #