HEADER OXIDOREDUCTASE 14-NOV-11 4A7V TITLE STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH DOPAMINE IN THE TITLE 2 P21 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE-1, SUPEROXIDE DISMUTASE 1, HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET303 KEYWDS OXIDOREDUCTASE, AMYOTROPHIC LATERAL SCLEROSIS, ANTIOXIDANT, DISEASE KEYWDS 2 MUTATION, METAL-BINDING, OXIOREDUCTASE, ZN SUPEROXIDE DISMUTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.A.WRIGHT,S.V.ANTONYUK,N.M.KERSHAW,R.W.STRANGE,S.S.HASNAIN REVDAT 3 08-MAY-13 4A7V 1 JRNL REVDAT 2 24-APR-13 4A7V 1 JRNL REVDAT 1 28-NOV-12 4A7V 0 JRNL AUTH G.S.A.WRIGHT,S.V.ANTONYUK,N.M.KERSHAW,R.W.STRANGE, JRNL AUTH 2 S.S.HASNAIN JRNL TITL LIGAND BINDING AND AGGREGATION OF PATHOGENIC SOD1. JRNL REF NAT.COMMUN. V. 4 1758 2013 JRNL REFN ISSN 2041-1723 JRNL PMID 23612299 JRNL DOI 10.1038/NCOMMS2750 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 96.72 REMARK 3 NUMBER OF REFLECTIONS : 122450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15910 REMARK 3 R VALUE (WORKING SET) : 0.15794 REMARK 3 FREE R VALUE : 0.18083 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 6491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.000 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.026 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.271 REMARK 3 BIN FREE R VALUE SET COUNT : 375 REMARK 3 BIN FREE R VALUE : 0.287 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.176 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02 REMARK 3 B22 (A**2) : 0.10 REMARK 3 B33 (A**2) : -0.14 REMARK 3 B12 (A**2) : -0.00 REMARK 3 B13 (A**2) : -0.11 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.753 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2389 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1565 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3243 ; 1.728 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3856 ; 2.333 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 7.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;39.006 ;25.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;11.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3954 ; 4.916 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 51 ;26.047 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4106 ;10.001 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4A7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-11. REMARK 100 THE PDBE ID CODE IS EBI-50329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.00 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.7 REMARK 200 R MERGE FOR SHELL (I) : 0.59 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 150 MM REMARK 280 SODIUM CHLORIDE, 2.5 M AMMONIUM SULPHATE PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.01750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 114 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN F, ILE 114 TO THR REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1A ILE A 17 O HOH F 2036 2.11 REMARK 500 OD1B ASP A 90 OD1 ASP A 92 1.47 REMARK 500 CD1A ILE F 17 O HOH A 2063 2.11 REMARK 500 OD1B ASN F 53 O HOH A 2017 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 40 O HOH F 2030 2546 1.58 REMARK 500 OD2B ASP A 90 NZ LYS F 136 2546 1.92 REMARK 500 OE1 GLU A 132 OD2 ASP F 96 2545 1.89 REMARK 500 O HOH A 2122 O HOH A 2138 2546 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS F 9 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS F 9 12.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1158 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 HIS A 63 ND1 103.4 REMARK 620 3 HIS A 80 ND1 121.6 111.0 REMARK 620 4 ASP A 83 OD1 100.0 104.0 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F1157 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 105.2 REMARK 620 3 HIS F 80 ND1 110.2 121.0 REMARK 620 4 ASP F 83 OD1 104.0 99.9 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1157 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 NE2 REMARK 620 2 HIS A 120 NE2 109.4 REMARK 620 3 HIS A 46 ND1 148.6 101.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F1156 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 48 NE2 REMARK 620 2 HIS F 120 NE2 108.7 REMARK 620 3 HIS F 46 ND1 149.3 101.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDP A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F1157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ6 RELATED DB: PDB REMARK 900 G93A SOD1 MUTANT COMPLEXED WITH QUINAZOLINE. REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN SUPEROXIDE REMARK 900 DISMUTASE,FAMILIAL AMYOTROPHIC LATERAL SCLEROSIS (FALS) REMARK 900 MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 2WYZ RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH UMP REMARK 900 RELATED ID: 4A7Q RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH 4 REMARK 900 -(4-METHYL-1,4-DIAZEPAN-1-YL)QUINAZOLINE IN THE REMARK 900 P21 SPACE GROUP. REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT S134N OF REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) TO 1.3A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE (CUZNSOD) AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 4A7R RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH 4 REMARK 900 -(4-METHYL-1,4-DIAZEPAN-1-YL)-2-(TRIFLUOROMETHYL) REMARK 900 QUINAZOLINE IN THE P21 SPACE GROUP REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 4A7S RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH 5 REMARK 900 -FLUOROURIDINE IN THE P21 SPACE GROUP REMARK 900 RELATED ID: 2WZ5 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH L-METHIONINE. REMARK 900 RELATED ID: 2XJL RELATED DB: PDB REMARK 900 MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE WITHOUT CU REMARK 900 LIGANDS REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REPLACED BY REMARK 900 GLU, CYS 6 REPLACED BY ALA AND CYS 111 REPLACED BY REMARK 900 SER (K136E, C6A, C111S) REMARK 900 RELATED ID: 2XJK RELATED DB: PDB REMARK 900 MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA REMARK 900 AND CYS 111 REPLACED BY SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN COPPER- REMARK 900 ZINCSUPEROXIDE DISMUTASE (CUZNSOD) MUTANT D125H TO 1.4A REMARK 900 RELATED ID: 2WZ0 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH ANILINE. REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC COPPER ZINC REMARK 900 SOD:THE STRUCTURAL EFFECTS OF DIMERIZATION REMARK 900 RELATED ID: 2WKO RELATED DB: PDB REMARK 900 STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND COPPER REMARK 900 DEPLETEDHUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE DISMUTASE: REMARK 900 ROLEOF METAL IONS IN PROTEIN FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE (CUZNSOD) AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED REMARK 900 BY ALA AND CYS 111 REPLACED BY SER (C6A,C111S) REMARK 900 WITH AN 18-RESIDUE HEPARIN-BINDING PEPTIDE FUSED TO REMARK 900 THE C-TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 4A7T RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH REMARK 900 ISOPROTERANOL IN THE P21 SPACE GROUP REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC REMARK 900 RESOLUTION REMARK 900 RELATED ID: 2WYT RELATED DB: PDB REMARK 900 1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANT REMARK 900 RELATED ID: 4A7G RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITH 4 REMARK 900 -METHYLPIPERAZIN-1-YL)QUINAZOLINE IN THE P21 SPACE REMARK 900 GROUP. REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REDUCED FORM REMARK 900 OFHUMAN COPPER, ZINC SUPEROXIDE DISMUTASE BEARING THE REMARK 900 SAMECHARGE AS THE NATIVE PROTEIN REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER-FREE REMARK 900 SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS MUTANT REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) TO 2.5A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE DISMUTASE, C6A, REMARK 900 C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC SUPEROXIDE REMARK 900 DISMUTASE, NMR, 36 STRUCTURES REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS-ISOLATED CU REMARK 900 -ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 4A7U RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN I113T SOD1 COMPLEXED WITH ADRENALINE REMARK 900 IN THE P21 SPACE GROUP. DBREF 4A7V A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 4A7V F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 4A7V THR A 113 UNP P00441 ILE 114 ENGINEERED MUTATION SEQADV 4A7V THR F 113 UNP P00441 ILE 114 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE THR GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 F 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 F 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 F 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CYS ILE THR GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET LDP A1000 11 HET SO4 A1154 5 HET SO4 A1155 5 HET CU A1157 1 HET ZN A1158 1 HET SO4 F1154 5 HET SO4 F1155 5 HET CU F1156 1 HET ZN F1157 1 HETNAM LDP L-DOPAMINE HETNAM SO4 SULFATE ION HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETSYN LDP DOPAMINE FORMUL 3 LDP C8 H11 N O2 FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 CU 2(CU 2+) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 HOH *243(H2 O) HELIX 1 1 GLY A 56 GLY A 61 5 6 HELIX 2 2 SER A 107 HIS A 110 5 4 HELIX 3 3 GLU A 132 LYS A 136 5 5 HELIX 4 4 GLY F 56 GLY F 61 5 6 HELIX 5 5 ASN F 131 LYS F 136 5 6 SHEET 1 AA 5 ALA A 95 ASP A 101 0 SHEET 2 AA 5 VAL A 29 LYS A 36 -1 O VAL A 29 N ASP A 101 SHEET 3 AA 5 GLN A 15 GLN A 22 -1 O GLN A 15 N LYS A 36 SHEET 4 AA 5 THR A 2 LEU A 8 -1 O THR A 2 N GLN A 22 SHEET 5 AA 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AB 4 ASP A 83 ALA A 89 0 SHEET 2 AB 4 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89 SHEET 3 AB 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AB 4 ARG A 143 VAL A 148 -1 N LEU A 144 O VAL A 119 SHEET 1 FA 5 ALA F 95 ASP F 101 0 SHEET 2 FA 5 VAL F 29 LYS F 36 -1 O VAL F 29 N ASP F 101 SHEET 3 FA 5 VAL F 14 GLN F 22 -1 O GLN F 15 N LYS F 36 SHEET 4 FA 5 THR F 2 GLY F 10 -1 O THR F 2 N GLN F 22 SHEET 5 FA 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 FB 4 ASP F 83 ALA F 89 0 SHEET 2 FB 4 GLY F 41 HIS F 48 -1 O GLY F 41 N ALA F 89 SHEET 3 FB 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 FB 4 ARG F 143 VAL F 148 -1 N LEU F 144 O VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.14 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.12 LINK CU CU A1157 NE2 HIS A 48 1555 1555 1.89 LINK CU CU A1157 NE2 HIS A 120 1555 1555 1.91 LINK CU CU A1157 ND1 HIS A 46 1555 1555 2.06 LINK ZN ZN A1158 OD1 ASP A 83 1555 1555 1.96 LINK ZN ZN A1158 ND1 HIS A 80 1555 1555 2.03 LINK ZN ZN A1158 ND1 HIS A 63 1555 1555 2.00 LINK ZN ZN A1158 ND1 HIS A 71 1555 1555 2.04 LINK CU CU F1156 NE2 HIS F 48 1555 1555 1.88 LINK CU CU F1156 NE2 HIS F 120 1555 1555 1.89 LINK CU CU F1156 ND1 HIS F 46 1555 1555 2.12 LINK ZN ZN F1157 OD1 ASP F 83 1555 1555 1.96 LINK ZN ZN F1157 ND1 HIS F 80 1555 1555 2.00 LINK ZN ZN F1157 ND1 HIS F 71 1555 1555 2.05 LINK ZN ZN F1157 ND1 HIS F 63 1555 1555 2.02 CISPEP 1 GLY F 12 PRO F 13 0 1.44 SITE 1 AC1 6 GLU A 21 GLN A 22 LYS A 23 PRO A 28 SITE 2 AC1 6 LYS A 30 GLU A 100 SITE 1 AC2 6 GLU A 133 THR A 137 ASN A 139 ALA A 140 SITE 2 AC2 6 GLY A 141 HOH A2121 SITE 1 AC3 4 THR A 58 SER A 142 ARG A 143 HOH A2132 SITE 1 AC4 4 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 1 AC5 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC6 6 GLU F 133 THR F 137 ASN F 139 GLY F 141 SITE 2 AC6 6 HOH F2086 HOH F2088 SITE 1 AC7 4 THR F 58 SER F 142 ARG F 143 HOH F2096 SITE 1 AC8 4 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 1 AC9 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 CRYST1 38.396 68.035 49.851 90.00 104.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026044 0.000000 0.006891 0.00000 SCALE2 0.000000 0.014698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020750 0.00000