HEADER TRANSFERASE 21-NOV-11 4A8T TITLE CRYSTAL STRUCTURE OF PUTRESCINE TRANSCARBAMYLASE FROM ENTEROCOCCUS TITLE 2 FAECALIS LACKING ITS C-TERMINAL HELIX, WITH BOUND N5- TITLE 3 (PHOSPHONOACETYL) -L-ORNITHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-317; COMPND 5 SYNONYM: PTC, PTCASE, AGMATINE CATABOLISM PROTEIN B, PUTRESCINE COMPND 6 TRANSCARBAMOYLASE, PUTRESCINE TRANSCARBAMYLASE; COMPND 7 EC: 2.1.3.6; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE PROTEIN LACKS THE C-TERMINAL HELIX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 STRAIN: SD10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE, TRABNSFERASE PALO, DELTA-N-(PHOSPHONOACETYL)-L- KEYWDS 2 ORNITHINE, AGMATINE DEIMINASE ROUTE, AGMATINE CATABOLISM, AGMATINE KEYWDS 3 FERMENTATION, ORNITHINE, ORNITHINE CARBAMOYLTRANSFERASE, ARGININE KEYWDS 4 DEIMINASE, PHOSPHONOACETYLORNITHINE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.POLO,F.GIL-ORTIZ,V.RUBIO REVDAT 3 20-DEC-23 4A8T 1 REMARK LINK REVDAT 2 14-MAR-12 4A8T 1 JRNL REVDAT 1 15-FEB-12 4A8T 0 JRNL AUTH L.M.POLO,F.GIL-ORTIZ,A.CANTIN,V.RUBIO JRNL TITL NEW INSIGHT INTO THE TRANSCARBAMYLASE FAMILY: THE STRUCTURE JRNL TITL 2 OF PUTRESCINE TRANSCARBAMYLASE, A KEY CATALYST FOR JRNL TITL 3 FERMENTATIVE UTILIZATION OF AGMATINE JRNL REF PLOS ONE V. 7 31528 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22363663 JRNL DOI 10.1371/JOURNAL.PONE.0031528 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3050 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2446 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2514 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1658 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3395 ; 1.133 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4046 ; 0.926 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 5.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;35.587 ;24.912 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;11.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2808 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1574 ; 0.399 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 649 ; 0.102 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2522 ; 0.736 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 940 ; 1.441 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 873 ; 2.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4610 -22.8270 31.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0097 REMARK 3 T33: 0.0164 T12: 0.0033 REMARK 3 T13: 0.0057 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6444 L22: 0.6885 REMARK 3 L33: 1.0779 L12: -0.1657 REMARK 3 L13: 0.1961 L23: 0.0754 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0803 S13: -0.0496 REMARK 3 S21: 0.0153 S22: 0.0049 S23: 0.0412 REMARK 3 S31: 0.0012 S32: -0.0324 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9120 -33.3200 14.2520 REMARK 3 T TENSOR REMARK 3 T11: 0.5428 T22: 0.3979 REMARK 3 T33: 0.2964 T12: -0.0157 REMARK 3 T13: -0.0485 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0057 REMARK 3 L33: 0.0014 L12: -0.0012 REMARK 3 L13: 0.0004 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0052 S13: -0.0037 REMARK 3 S21: -0.0540 S22: 0.0018 S23: 0.0124 REMARK 3 S31: 0.0063 S32: 0.0193 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6070 -33.7910 20.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0441 REMARK 3 T33: 0.0503 T12: -0.0199 REMARK 3 T13: -0.0049 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9447 L22: 2.1957 REMARK 3 L33: 0.3516 L12: -1.0796 REMARK 3 L13: 0.2747 L23: -0.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.0936 S13: -0.1763 REMARK 3 S21: -0.1878 S22: -0.0397 S23: 0.1495 REMARK 3 S31: 0.1087 S32: -0.0241 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1670 -10.8270 19.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0123 REMARK 3 T33: 0.0128 T12: 0.0070 REMARK 3 T13: -0.0011 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.9473 L22: 1.2352 REMARK 3 L33: 0.9602 L12: -0.1390 REMARK 3 L13: 0.2013 L23: -0.3727 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0238 S13: 0.0532 REMARK 3 S21: -0.0954 S22: -0.0122 S23: 0.0581 REMARK 3 S31: -0.0557 S32: -0.0392 S33: -0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 76-78 ARE DISORDERED. REMARK 4 REMARK 4 4A8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4A8H REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 30% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1 M HEPES, PH 7.5, 1 MM N5- REMARK 280 (PHOSPHONOACETYL)-L-ORNITHINE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.16000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.16000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.16000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.16000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.16000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 44.99500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -77.93363 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 89.99000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 92.16000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 44.99500 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 -77.93363 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 92.16000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 89.99000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 92.16000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1319 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2036 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2065 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLN A 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 LYS A 31 CE NZ REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ARG A 106 CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 LYS A 200 CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 TYR A 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 28 O HOH A 2082 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 -62.38 -103.94 REMARK 500 MET A 125 136.73 121.77 REMARK 500 HIS A 130 73.65 -154.58 REMARK 500 ALA A 235 66.55 -152.42 REMARK 500 LEU A 270 157.16 71.46 REMARK 500 GLU A 276 -97.26 -108.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2018 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2150 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1319 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 69 NE2 90.8 REMARK 620 3 HIS A 69 NE2 92.6 93.3 REMARK 620 4 HOH A2131 O 84.0 169.3 96.3 REMARK 620 5 HOH A2131 O 92.2 83.4 174.3 87.4 REMARK 620 6 HOH A2131 O 173.8 95.4 87.3 89.8 88.4 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAO A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1320 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A8H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PUTRESCINE TRANSCARBAMYLASE FROM ENTEROCOCCUS REMARK 900 FAECALIS WITH N-(PHOSPHONOACETYL)-PUTRESCINE REMARK 900 RELATED ID: 4A8P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PUTRESCINE TRANSCARBAMYLASE FROM ENTEROCOCCUS REMARK 900 FAECALIS WITH N5-(PHOSPHONOACETYL)-L- ORNITHINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 Y318 WAS REPLACED WITH A STOP CODON, LACKING THE C- REMARK 999 TERMINAL HELIX DBREF 4A8T A 1 317 UNP Q837U7 PTC_ENTFA 1 317 SEQADV 4A8T MET A -21 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -20 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -19 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -18 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -17 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -16 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T HIS A -15 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T SER A -14 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T SER A -13 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T GLY A -12 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T VAL A -11 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T ASP A -10 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T LEU A -9 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T GLY A -8 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T THR A -7 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T GLU A -6 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T ASN A -5 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T LEU A -4 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T TYR A -3 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T PHE A -2 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T GLN A -1 UNP Q837U7 EXPRESSION TAG SEQADV 4A8T SER A 0 UNP Q837U7 EXPRESSION TAG SEQRES 1 A 339 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 339 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS ARG ASP SEQRES 3 A 339 TYR VAL THR THR GLU THR TYR THR LYS GLU GLU MET HIS SEQRES 4 A 339 TYR LEU VAL ASP LEU SER LEU LYS ILE LYS GLU ALA ILE SEQRES 5 A 339 LYS ASN GLY TYR TYR PRO GLN LEU LEU LYS ASN LYS SER SEQRES 6 A 339 LEU GLY MET ILE PHE GLN GLN SER SER THR ARG THR ARG SEQRES 7 A 339 VAL SER PHE GLU THR ALA MET GLU GLN LEU GLY GLY HIS SEQRES 8 A 339 GLY GLU TYR LEU ALA PRO GLY GLN ILE GLN LEU GLY GLY SEQRES 9 A 339 HIS GLU THR ILE GLU ASP THR SER ARG VAL LEU SER ARG SEQRES 10 A 339 LEU VAL ASP ILE LEU MET ALA ARG VAL GLU ARG HIS HIS SEQRES 11 A 339 SER ILE VAL ASP LEU ALA ASN CYS ALA THR ILE PRO VAL SEQRES 12 A 339 ILE ASN GLY MET SER ASP TYR ASN HIS PRO THR GLN GLU SEQRES 13 A 339 LEU GLY ASP LEU CYS THR MET VAL GLU HIS LEU PRO GLU SEQRES 14 A 339 GLY LYS LYS LEU GLU ASP CYS LYS VAL VAL PHE VAL GLY SEQRES 15 A 339 ASP ALA THR GLN VAL CYS PHE SER LEU GLY LEU ILE THR SEQRES 16 A 339 THR LYS MET GLY MET ASN PHE VAL HIS PHE GLY PRO GLU SEQRES 17 A 339 GLY PHE GLN LEU ASN GLU GLU HIS GLN ALA LYS LEU ALA SEQRES 18 A 339 LYS ASN CYS GLU VAL SER GLY GLY SER PHE LEU VAL THR SEQRES 19 A 339 ASP ASP ALA SER SER VAL GLU GLY ALA ASP PHE LEU TYR SEQRES 20 A 339 THR ASP VAL TRP TYR GLY LEU TYR GLU ALA GLU LEU SER SEQRES 21 A 339 GLU GLU GLU ARG MET LYS VAL PHE TYR PRO LYS TYR GLN SEQRES 22 A 339 VAL ASN GLN GLU MET MET ASP ARG ALA GLY ALA ASN CYS SEQRES 23 A 339 LYS PHE MET HIS CYS LEU PRO ALA THR ARG GLY GLU GLU SEQRES 24 A 339 VAL THR ASP GLU VAL ILE ASP GLY LYS ASN SER ILE CYS SEQRES 25 A 339 PHE ASP GLU ALA GLU ASN ARG LEU THR SER ILE ARG GLY SEQRES 26 A 339 LEU LEU VAL TYR LEU MET ASN ASP TYR GLU ALA LYS ASN SEQRES 27 A 339 PRO HET PAO A1318 16 HET NI A1319 1 HET PGE A1320 10 HETNAM PAO N-(PHOSPHONOACETYL)-L-ORNITHINE HETNAM NI NICKEL (II) ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 PAO C7 H15 N2 O6 P FORMUL 3 NI NI 2+ FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *387(H2 O) HELIX 1 1 THR A 12 ASN A 32 1 21 HELIX 2 2 THR A 53 LEU A 66 1 14 HELIX 3 3 THR A 85 VAL A 97 1 13 HELIX 4 4 ARG A 106 ALA A 117 1 12 HELIX 5 5 HIS A 130 HIS A 144 1 15 HELIX 6 6 LYS A 150 ASP A 153 5 4 HELIX 7 7 THR A 163 MET A 176 1 14 HELIX 8 8 ASN A 191 GLY A 206 1 16 HELIX 9 9 ASP A 214 VAL A 218 5 5 HELIX 10 10 SER A 238 TYR A 247 1 10 HELIX 11 11 ASN A 253 GLY A 261 1 9 HELIX 12 12 THR A 279 ASP A 284 1 6 HELIX 13 13 ILE A 289 ASN A 316 1 28 SHEET 1 AA 5 HIS A 69 LEU A 73 0 SHEET 2 AA 5 SER A 43 PHE A 48 1 O LEU A 44 N GLU A 71 SHEET 3 AA 5 ILE A 99 ARG A 103 1 O ILE A 99 N GLY A 45 SHEET 4 AA 5 VAL A 121 ASN A 123 1 O ILE A 122 N ALA A 102 SHEET 5 AA 5 TYR A 5 VAL A 6 1 O TYR A 5 N ASN A 123 SHEET 1 AB 5 SER A 208 THR A 212 0 SHEET 2 AB 5 ASN A 179 PHE A 183 1 O PHE A 180 N LEU A 210 SHEET 3 AB 5 LYS A 155 VAL A 159 1 O VAL A 156 N VAL A 181 SHEET 4 AB 5 PHE A 223 THR A 226 1 O PHE A 223 N VAL A 157 SHEET 5 AB 5 LYS A 265 MET A 267 1 O LYS A 265 N LEU A 224 LINK NE2 HIS A 69 NI NI A1319 1555 1555 2.27 LINK NE2 HIS A 69 NI NI A1319 2545 1555 2.24 LINK NE2 HIS A 69 NI NI A1319 3655 1555 2.17 LINK NI NI A1319 O HOH A2131 1555 1555 2.18 LINK NI NI A1319 O HOH A2131 1555 2545 2.23 LINK NI NI A1319 O HOH A2131 1555 3655 2.14 CISPEP 1 TYR A 247 PRO A 248 0 1.03 CISPEP 2 LEU A 270 PRO A 271 0 -4.85 SITE 1 AC1 17 SER A 52 THR A 53 ARG A 54 THR A 55 SITE 2 AC1 17 ARG A 103 HIS A 130 THR A 163 GLN A 164 SITE 3 AC1 17 ASP A 227 LEU A 270 ARG A 297 HOH A2121 SITE 4 AC1 17 HOH A2299 HOH A2300 HOH A2302 HOH A2386 SITE 5 AC1 17 HOH A2387 SITE 1 AC2 2 HIS A 69 HOH A2131 SITE 1 AC3 5 TYR A 18 ASP A 21 LEU A 22 LYS A 25 SITE 2 AC3 5 GLU A 28 CRYST1 89.990 89.990 184.320 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011112 0.006416 0.000000 0.00000 SCALE2 0.000000 0.012831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005425 0.00000