data_4A9T # _entry.id 4A9T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4A9T pdb_00004a9t 10.2210/pdb4a9t/pdb PDBE EBI-50507 ? ? WWPDB D_1290050507 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GXC unspecified 'FHA DOMAIN FROM HUMAN CHK2 KINASE IN COMPLEX WITH A SYNTHETIC PHOSPHOPEPTIDE' PDB 2CN5 unspecified 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH ADP' PDB 2CN8 unspecified 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH DEBROMOHYMENIALDISINE' PDB 2W0J unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH NSC 109555 , A SPECIFIC INHIBITOR' PDB 2W7X unspecified 'CELLULAR INHIBITION OF CHECKPOINT KINASE 2 AND POTENTIATION OF CYTOTOXIC DRUGS BY NOVEL CHK2 INHIBITOR PV1019' PDB 2WTC unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR' PDB 2WTD unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR' PDB 2WTI unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR' PDB 2WTJ unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR' PDB 2XBJ unspecified 'CRYSTAL STRUCTURE OF CHK2 IN COMPLEX WITH AN INHIBITOR' PDB 2XK9 unspecified 'STRUCTURAL ANALYSIS OF CHECKPOINT KINASE 2 (CHK2) IN COMPLEX WITH INHIBITOR PV1533' PDB 2XM8 unspecified 'CO-CRYSTAL STRUCTURE OF A SMALL MOLECULE INHIBITOR BOUND TO THE KINASE DOMAIN OF CHK2' PDB 2XM9 unspecified 'STRUCTURE OF A SMALL MOLECULE INHIBITOR WITH THE KINASE DOMAIN OF CHK2' PDB 2YCF unspecified 'CRYSTAL STRUCTURE OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV1531' PDB 2YCQ unspecified 'CRYSTAL STRUCTURE OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV1115' PDB 2YCR unspecified 'CRYSTAL STRUCTURE OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV976' PDB 2YCS unspecified 'CRYSTAL STRUCTURE OF CHECKPOINT KINASE 2 IN COMPLEX WITH PV788' PDB 2YIQ unspecified 'STRUCTURAL ANALYSIS OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV1322' PDB 2YIR unspecified 'STRUCTURAL ANALYSIS OF CHECKPOINT KINASE 2 IN COMPLEX WITH INHIBITOR PV1352' PDB 2YIT unspecified 'STRUCTURAL ANALYSIS OF CHECKPOINT KINASE 2 IN COMPLEX WITH PV1162, A NOVEL INHIBITOR' PDB 4A9R unspecified 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH BENZIMIDAZOLE CARBOXAMIDE INHIBITOR' PDB 4A9S unspecified 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH BENZIMIDAZOLE CARBOXAMIDE INHIBITOR' PDB 4A9U unspecified 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH BENZIMIDAZOLE CARBOXAMIDE INHIBITOR' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A9T _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-11-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matijssen, C.' 1 'Silva-Santisteban, M.C.' 2 'Westwood, I.M.' 3 'Siddique, S.' 4 'Choi, V.' 5 'Sheldrake, P.' 6 'van Montfort, R.L.M.' 7 'Blagg, J.' 8 # _citation.id primary _citation.title ;Benzimidazole Inhibitors of the Protein Kinase Chk2: Clarification of the Binding Mode by Flexible Side Chain Docking and Protein-Ligand Crystallography. ; _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_volume 20 _citation.page_first 6630 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM BMECEP _citation.country UK _citation.journal_id_ISSN 0968-0896 _citation.journal_id_CSD 1200 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23058106 _citation.pdbx_database_id_DOI 10.1016/J.BMC.2012.09.024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matijssen, C.' 1 ? primary 'Silva-Santisteban, M.C.' 2 ? primary 'Westwood, I.M.' 3 ? primary 'Siddique, S.' 4 ? primary 'Choi, V.' 5 ? primary 'Sheldrake, P.' 6 ? primary 'Van Montfort, R.L.M.' 7 ? primary 'Blagg, J.' 8 ? # _cell.entry_id 4A9T _cell.length_a 91.010 _cell.length_b 91.010 _cell.length_c 93.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9T _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SERINE/THREONINE-PROTEIN KINASE CHK2' 37111.844 1 2.7.11.1 ? 'KINASE DOMAIN, RESIDUES 210-531' ? 2 non-polymer syn '2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE' 474.982 1 ? ? ? ? 3 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CHK2 CHECKPOINT HOMOLOG, CDS1 HOMOLOG, HUCDS1, HCDS1, CHECKPOINT KINASE 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSHMSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNH PCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDC LIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPSTSRKRP REGEAEGAE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSHMSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNH PCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDC LIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPSTSRKRP REGEAEGAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 HIS n 1 7 MET n 1 8 SER n 1 9 VAL n 1 10 TYR n 1 11 PRO n 1 12 LYS n 1 13 ALA n 1 14 LEU n 1 15 ARG n 1 16 ASP n 1 17 GLU n 1 18 TYR n 1 19 ILE n 1 20 MET n 1 21 SER n 1 22 LYS n 1 23 THR n 1 24 LEU n 1 25 GLY n 1 26 SER n 1 27 GLY n 1 28 ALA n 1 29 CYS n 1 30 GLY n 1 31 GLU n 1 32 VAL n 1 33 LYS n 1 34 LEU n 1 35 ALA n 1 36 PHE n 1 37 GLU n 1 38 ARG n 1 39 LYS n 1 40 THR n 1 41 CYS n 1 42 LYS n 1 43 LYS n 1 44 VAL n 1 45 ALA n 1 46 ILE n 1 47 LYS n 1 48 ILE n 1 49 ILE n 1 50 SER n 1 51 LYS n 1 52 ARG n 1 53 LYS n 1 54 PHE n 1 55 ALA n 1 56 ILE n 1 57 GLY n 1 58 SER n 1 59 ALA n 1 60 ARG n 1 61 GLU n 1 62 ALA n 1 63 ASP n 1 64 PRO n 1 65 ALA n 1 66 LEU n 1 67 ASN n 1 68 VAL n 1 69 GLU n 1 70 THR n 1 71 GLU n 1 72 ILE n 1 73 GLU n 1 74 ILE n 1 75 LEU n 1 76 LYS n 1 77 LYS n 1 78 LEU n 1 79 ASN n 1 80 HIS n 1 81 PRO n 1 82 CYS n 1 83 ILE n 1 84 ILE n 1 85 LYS n 1 86 ILE n 1 87 LYS n 1 88 ASN n 1 89 PHE n 1 90 PHE n 1 91 ASP n 1 92 ALA n 1 93 GLU n 1 94 ASP n 1 95 TYR n 1 96 TYR n 1 97 ILE n 1 98 VAL n 1 99 LEU n 1 100 GLU n 1 101 LEU n 1 102 MET n 1 103 GLU n 1 104 GLY n 1 105 GLY n 1 106 GLU n 1 107 LEU n 1 108 PHE n 1 109 ASP n 1 110 LYS n 1 111 VAL n 1 112 VAL n 1 113 GLY n 1 114 ASN n 1 115 LYS n 1 116 ARG n 1 117 LEU n 1 118 LYS n 1 119 GLU n 1 120 ALA n 1 121 THR n 1 122 CYS n 1 123 LYS n 1 124 LEU n 1 125 TYR n 1 126 PHE n 1 127 TYR n 1 128 GLN n 1 129 MET n 1 130 LEU n 1 131 LEU n 1 132 ALA n 1 133 VAL n 1 134 GLN n 1 135 TYR n 1 136 LEU n 1 137 HIS n 1 138 GLU n 1 139 ASN n 1 140 GLY n 1 141 ILE n 1 142 ILE n 1 143 HIS n 1 144 ARG n 1 145 ASP n 1 146 LEU n 1 147 LYS n 1 148 PRO n 1 149 GLU n 1 150 ASN n 1 151 VAL n 1 152 LEU n 1 153 LEU n 1 154 SER n 1 155 SER n 1 156 GLN n 1 157 GLU n 1 158 GLU n 1 159 ASP n 1 160 CYS n 1 161 LEU n 1 162 ILE n 1 163 LYS n 1 164 ILE n 1 165 THR n 1 166 ASP n 1 167 PHE n 1 168 GLY n 1 169 HIS n 1 170 SER n 1 171 LYS n 1 172 ILE n 1 173 LEU n 1 174 GLY n 1 175 GLU n 1 176 THR n 1 177 SER n 1 178 LEU n 1 179 MET n 1 180 ARG n 1 181 THR n 1 182 LEU n 1 183 CYS n 1 184 GLY n 1 185 THR n 1 186 PRO n 1 187 THR n 1 188 TYR n 1 189 LEU n 1 190 ALA n 1 191 PRO n 1 192 GLU n 1 193 VAL n 1 194 LEU n 1 195 VAL n 1 196 SER n 1 197 VAL n 1 198 GLY n 1 199 THR n 1 200 ALA n 1 201 GLY n 1 202 TYR n 1 203 ASN n 1 204 ARG n 1 205 ALA n 1 206 VAL n 1 207 ASP n 1 208 CYS n 1 209 TRP n 1 210 SER n 1 211 LEU n 1 212 GLY n 1 213 VAL n 1 214 ILE n 1 215 LEU n 1 216 PHE n 1 217 ILE n 1 218 CYS n 1 219 LEU n 1 220 SER n 1 221 GLY n 1 222 TYR n 1 223 PRO n 1 224 PRO n 1 225 PHE n 1 226 SER n 1 227 GLU n 1 228 HIS n 1 229 ARG n 1 230 THR n 1 231 GLN n 1 232 VAL n 1 233 SER n 1 234 LEU n 1 235 LYS n 1 236 ASP n 1 237 GLN n 1 238 ILE n 1 239 THR n 1 240 SER n 1 241 GLY n 1 242 LYS n 1 243 TYR n 1 244 ASN n 1 245 PHE n 1 246 ILE n 1 247 PRO n 1 248 GLU n 1 249 VAL n 1 250 TRP n 1 251 ALA n 1 252 GLU n 1 253 VAL n 1 254 SER n 1 255 GLU n 1 256 LYS n 1 257 ALA n 1 258 LEU n 1 259 ASP n 1 260 LEU n 1 261 VAL n 1 262 LYS n 1 263 LYS n 1 264 LEU n 1 265 LEU n 1 266 VAL n 1 267 VAL n 1 268 ASP n 1 269 PRO n 1 270 LYS n 1 271 ALA n 1 272 ARG n 1 273 PHE n 1 274 THR n 1 275 THR n 1 276 GLU n 1 277 GLU n 1 278 ALA n 1 279 LEU n 1 280 ARG n 1 281 HIS n 1 282 PRO n 1 283 TRP n 1 284 LEU n 1 285 GLN n 1 286 ASP n 1 287 GLU n 1 288 ASP n 1 289 MET n 1 290 LYS n 1 291 ARG n 1 292 LYS n 1 293 PHE n 1 294 GLN n 1 295 ASP n 1 296 LEU n 1 297 LEU n 1 298 SER n 1 299 GLU n 1 300 GLU n 1 301 ASN n 1 302 GLU n 1 303 SER n 1 304 THR n 1 305 ALA n 1 306 LEU n 1 307 PRO n 1 308 GLN n 1 309 VAL n 1 310 LEU n 1 311 ALA n 1 312 GLN n 1 313 PRO n 1 314 SER n 1 315 THR n 1 316 SER n 1 317 ARG n 1 318 LYS n 1 319 ARG n 1 320 PRO n 1 321 ARG n 1 322 GLU n 1 323 GLY n 1 324 GLU n 1 325 ALA n 1 326 GLU n 1 327 GLY n 1 328 ALA n 1 329 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA2 PLYSS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTHREE-E _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'HUMAN CDNA LIBRARY' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CHK2_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O96017 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4A9T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 329 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O96017 _struct_ref_seq.db_align_beg 210 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 531 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 210 _struct_ref_seq.pdbx_auth_seq_align_end 531 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A9T GLY A 1 ? UNP O96017 ? ? 'expression tag' 203 1 1 4A9T PRO A 2 ? UNP O96017 ? ? 'expression tag' 204 2 1 4A9T LEU A 3 ? UNP O96017 ? ? 'expression tag' 205 3 1 4A9T GLY A 4 ? UNP O96017 ? ? 'expression tag' 206 4 1 4A9T SER A 5 ? UNP O96017 ? ? 'expression tag' 207 5 1 4A9T HIS A 6 ? UNP O96017 ? ? 'expression tag' 208 6 1 4A9T MET A 7 ? UNP O96017 ? ? 'expression tag' 209 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A9T non-polymer . '2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE' ? 'C27 H27 Cl N4 O2' 474.982 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A9T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_percent_sol 62.9 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES PH 7.5, 0.2 M MAGNESIUM NITRATE, 8-16% (W/V) PEG 3350.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.9763 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A9T _reflns.observed_criterion_sigma_I 1.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60.26 _reflns.d_resolution_high 2.48 _reflns.number_obs 16275 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.40 _reflns.B_iso_Wilson_estimate 55.39 _reflns.pdbx_redundancy 4.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.48 _reflns_shell.d_res_low 2.61 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.30 _reflns_shell.pdbx_redundancy 4.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A9T _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12665 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.916 _refine.ls_d_res_high 2.700 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.1905 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1891 _refine.ls_R_factor_R_free 0.2181 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 622 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.0297 _refine.aniso_B[2][2] 0.0297 _refine.aniso_B[3][3] -0.0595 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.300 _refine.solvent_model_param_bsol 37.063 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.06 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2WTJ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.71 _refine.pdbx_overall_phase_error 19.40 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2247 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 2340 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 40.916 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2340 'X-RAY DIFFRACTION' ? f_angle_d 0.804 ? ? 3164 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.027 ? ? 855 'X-RAY DIFFRACTION' ? f_chiral_restr 0.053 ? ? 367 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 392 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.7001 2.9717 2954 0.2763 100.00 0.3198 . . 164 . . 'X-RAY DIFFRACTION' . 2.9717 3.4016 2981 0.2181 100.00 0.2607 . . 147 . . 'X-RAY DIFFRACTION' . 3.4016 4.2849 3002 0.1816 100.00 0.1910 . . 153 . . 'X-RAY DIFFRACTION' . 4.2849 40.9211 3106 0.1630 99.00 0.1947 . . 158 . . # _struct.entry_id 4A9T _struct.title 'CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH BENZIMIDAZOLE CARBOXAMIDE INHIBITOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A9T _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 11 ? GLU A 17 ? PRO A 213 GLU A 219 1 ? 7 HELX_P HELX_P2 2 PRO A 64 ? LEU A 78 ? PRO A 266 LEU A 280 1 ? 15 HELX_P HELX_P3 3 PHE A 108 ? VAL A 111 ? PHE A 310 VAL A 313 5 ? 4 HELX_P HELX_P4 4 LYS A 118 ? ASN A 139 ? LYS A 320 ASN A 341 1 ? 22 HELX_P HELX_P5 5 LYS A 147 ? GLU A 149 ? LYS A 349 GLU A 351 5 ? 3 HELX_P HELX_P6 6 THR A 176 ? CYS A 183 ? THR A 378 CYS A 385 1 ? 8 HELX_P HELX_P7 7 ALA A 190 ? SER A 196 ? ALA A 392 SER A 398 1 ? 7 HELX_P HELX_P8 8 ARG A 204 ? GLY A 221 ? ARG A 406 GLY A 423 1 ? 18 HELX_P HELX_P9 9 SER A 233 ? GLY A 241 ? SER A 435 GLY A 443 1 ? 9 HELX_P HELX_P10 10 ILE A 246 ? ALA A 251 ? ILE A 448 ALA A 453 1 ? 6 HELX_P HELX_P11 11 SER A 254 ? LEU A 265 ? SER A 456 LEU A 467 1 ? 12 HELX_P HELX_P12 12 THR A 274 ? HIS A 281 ? THR A 476 HIS A 483 1 ? 8 HELX_P HELX_P13 13 PRO A 282 ? GLN A 285 ? PRO A 484 GLN A 487 5 ? 4 HELX_P HELX_P14 14 ASP A 286 ? GLU A 302 ? ASP A 488 GLU A 504 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 18 ? GLY A 25 ? TYR A 220 GLY A 227 AA 2 GLU A 31 ? GLU A 37 ? GLU A 233 GLU A 239 AA 3 LYS A 43 ? ILE A 49 ? LYS A 245 ILE A 251 AA 4 TYR A 95 ? LEU A 99 ? TYR A 297 LEU A 301 AA 5 ILE A 86 ? ASP A 91 ? ILE A 288 ASP A 293 AB 1 GLY A 105 ? GLU A 106 ? GLY A 307 GLU A 308 AB 2 VAL A 151 ? LEU A 153 ? VAL A 353 LEU A 355 AB 3 ILE A 162 ? ILE A 164 ? ILE A 364 ILE A 366 AC 1 ILE A 141 ? ILE A 142 ? ILE A 343 ILE A 344 AC 2 LYS A 171 ? ILE A 172 ? LYS A 373 ILE A 374 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 24 ? N LEU A 226 O VAL A 32 ? O VAL A 234 AA 2 3 N ALA A 35 ? N ALA A 237 O VAL A 44 ? O VAL A 246 AA 3 4 N ILE A 49 ? N ILE A 251 O TYR A 95 ? O TYR A 297 AA 4 5 O VAL A 98 ? O VAL A 300 N LYS A 87 ? N LYS A 289 AB 1 2 O GLY A 105 ? O GLY A 307 N LEU A 153 ? N LEU A 355 AB 2 3 N LEU A 152 ? N LEU A 354 O LYS A 163 ? O LYS A 365 AC 1 2 N ILE A 142 ? N ILE A 344 O LYS A 171 ? O LYS A 373 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A A9T 1514 ? 10 'BINDING SITE FOR RESIDUE A9T A 1514' AC2 Software A NO3 1515 ? 5 'BINDING SITE FOR RESIDUE NO3 A 1515' AC3 Software A EDO 1516 ? 2 'BINDING SITE FOR RESIDUE EDO A 1516' AC4 Software A EDO 1517 ? 5 'BINDING SITE FOR RESIDUE EDO A 1517' AC5 Software A EDO 1518 ? 3 'BINDING SITE FOR RESIDUE EDO A 1518' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LYS A 22 ? LYS A 224 . ? 1_555 ? 2 AC1 10 LYS A 47 ? LYS A 249 . ? 1_555 ? 3 AC1 10 MET A 102 ? MET A 304 . ? 1_555 ? 4 AC1 10 GLU A 103 ? GLU A 305 . ? 1_555 ? 5 AC1 10 GLY A 105 ? GLY A 307 . ? 1_555 ? 6 AC1 10 GLU A 106 ? GLU A 308 . ? 1_555 ? 7 AC1 10 LEU A 152 ? LEU A 354 . ? 1_555 ? 8 AC1 10 THR A 165 ? THR A 367 . ? 1_555 ? 9 AC1 10 ASP A 166 ? ASP A 368 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH A 2016 . ? 1_555 ? 11 AC2 5 LEU A 173 ? LEU A 375 . ? 1_555 ? 12 AC2 5 GLY A 201 ? GLY A 403 . ? 1_555 ? 13 AC2 5 TYR A 202 ? TYR A 404 . ? 1_555 ? 14 AC2 5 ASN A 203 ? ASN A 405 . ? 1_555 ? 15 AC2 5 ARG A 204 ? ARG A 406 . ? 1_555 ? 16 AC3 2 ILE A 86 ? ILE A 288 . ? 1_555 ? 17 AC3 2 ASN A 88 ? ASN A 290 . ? 1_555 ? 18 AC4 5 GLU A 17 ? GLU A 219 . ? 1_555 ? 19 AC4 5 ASN A 88 ? ASN A 290 . ? 1_555 ? 20 AC4 5 PHE A 89 ? PHE A 291 . ? 1_555 ? 21 AC4 5 PHE A 90 ? PHE A 292 . ? 1_555 ? 22 AC4 5 EDO F . ? EDO A 1518 . ? 1_555 ? 23 AC5 3 ALA A 13 ? ALA A 215 . ? 1_555 ? 24 AC5 3 PHE A 90 ? PHE A 292 . ? 1_555 ? 25 AC5 3 EDO E . ? EDO A 1517 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A9T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A9T _atom_sites.fract_transf_matrix[1][1] 0.010988 _atom_sites.fract_transf_matrix[1][2] 0.006344 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012688 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010695 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 203 ? ? ? A . n A 1 2 PRO 2 204 ? ? ? A . n A 1 3 LEU 3 205 ? ? ? A . n A 1 4 GLY 4 206 ? ? ? A . n A 1 5 SER 5 207 ? ? ? A . n A 1 6 HIS 6 208 ? ? ? A . n A 1 7 MET 7 209 209 MET MET A . n A 1 8 SER 8 210 210 SER SER A . n A 1 9 VAL 9 211 211 VAL VAL A . n A 1 10 TYR 10 212 212 TYR TYR A . n A 1 11 PRO 11 213 213 PRO PRO A . n A 1 12 LYS 12 214 214 LYS LYS A . n A 1 13 ALA 13 215 215 ALA ALA A . n A 1 14 LEU 14 216 216 LEU LEU A . n A 1 15 ARG 15 217 217 ARG ARG A . n A 1 16 ASP 16 218 218 ASP ASP A . n A 1 17 GLU 17 219 219 GLU GLU A . n A 1 18 TYR 18 220 220 TYR TYR A . n A 1 19 ILE 19 221 221 ILE ILE A . n A 1 20 MET 20 222 222 MET MET A . n A 1 21 SER 21 223 223 SER SER A . n A 1 22 LYS 22 224 224 LYS LYS A . n A 1 23 THR 23 225 225 THR THR A . n A 1 24 LEU 24 226 226 LEU LEU A . n A 1 25 GLY 25 227 227 GLY GLY A . n A 1 26 SER 26 228 228 SER SER A . n A 1 27 GLY 27 229 ? ? ? A . n A 1 28 ALA 28 230 ? ? ? A . n A 1 29 CYS 29 231 ? ? ? A . n A 1 30 GLY 30 232 232 GLY GLY A . n A 1 31 GLU 31 233 233 GLU GLU A . n A 1 32 VAL 32 234 234 VAL VAL A . n A 1 33 LYS 33 235 235 LYS LYS A . n A 1 34 LEU 34 236 236 LEU LEU A . n A 1 35 ALA 35 237 237 ALA ALA A . n A 1 36 PHE 36 238 238 PHE PHE A . n A 1 37 GLU 37 239 239 GLU GLU A . n A 1 38 ARG 38 240 240 ARG ARG A . n A 1 39 LYS 39 241 241 LYS LYS A . n A 1 40 THR 40 242 242 THR THR A . n A 1 41 CYS 41 243 243 CYS CYS A . n A 1 42 LYS 42 244 244 LYS LYS A . n A 1 43 LYS 43 245 245 LYS LYS A . n A 1 44 VAL 44 246 246 VAL VAL A . n A 1 45 ALA 45 247 247 ALA ALA A . n A 1 46 ILE 46 248 248 ILE ILE A . n A 1 47 LYS 47 249 249 LYS LYS A . n A 1 48 ILE 48 250 250 ILE ILE A . n A 1 49 ILE 49 251 251 ILE ILE A . n A 1 50 SER 50 252 252 SER SER A . n A 1 51 LYS 51 253 253 LYS LYS A . n A 1 52 ARG 52 254 ? ? ? A . n A 1 53 LYS 53 255 ? ? ? A . n A 1 54 PHE 54 256 ? ? ? A . n A 1 55 ALA 55 257 ? ? ? A . n A 1 56 ILE 56 258 ? ? ? A . n A 1 57 GLY 57 259 ? ? ? A . n A 1 58 SER 58 260 ? ? ? A . n A 1 59 ALA 59 261 ? ? ? A . n A 1 60 ARG 60 262 ? ? ? A . n A 1 61 GLU 61 263 ? ? ? A . n A 1 62 ALA 62 264 ? ? ? A . n A 1 63 ASP 63 265 ? ? ? A . n A 1 64 PRO 64 266 266 PRO PRO A . n A 1 65 ALA 65 267 267 ALA ALA A . n A 1 66 LEU 66 268 268 LEU LEU A . n A 1 67 ASN 67 269 269 ASN ASN A . n A 1 68 VAL 68 270 270 VAL VAL A . n A 1 69 GLU 69 271 271 GLU GLU A . n A 1 70 THR 70 272 272 THR THR A . n A 1 71 GLU 71 273 273 GLU GLU A . n A 1 72 ILE 72 274 274 ILE ILE A . n A 1 73 GLU 73 275 275 GLU GLU A . n A 1 74 ILE 74 276 276 ILE ILE A . n A 1 75 LEU 75 277 277 LEU LEU A . n A 1 76 LYS 76 278 278 LYS LYS A . n A 1 77 LYS 77 279 279 LYS LYS A . n A 1 78 LEU 78 280 280 LEU LEU A . n A 1 79 ASN 79 281 281 ASN ASN A . n A 1 80 HIS 80 282 282 HIS HIS A . n A 1 81 PRO 81 283 283 PRO PRO A . n A 1 82 CYS 82 284 284 CYS CYS A . n A 1 83 ILE 83 285 285 ILE ILE A . n A 1 84 ILE 84 286 286 ILE ILE A . n A 1 85 LYS 85 287 287 LYS LYS A . n A 1 86 ILE 86 288 288 ILE ILE A . n A 1 87 LYS 87 289 289 LYS LYS A . n A 1 88 ASN 88 290 290 ASN ASN A . n A 1 89 PHE 89 291 291 PHE PHE A . n A 1 90 PHE 90 292 292 PHE PHE A . n A 1 91 ASP 91 293 293 ASP ASP A . n A 1 92 ALA 92 294 294 ALA ALA A . n A 1 93 GLU 93 295 295 GLU GLU A . n A 1 94 ASP 94 296 296 ASP ASP A . n A 1 95 TYR 95 297 297 TYR TYR A . n A 1 96 TYR 96 298 298 TYR TYR A . n A 1 97 ILE 97 299 299 ILE ILE A . n A 1 98 VAL 98 300 300 VAL VAL A . n A 1 99 LEU 99 301 301 LEU LEU A . n A 1 100 GLU 100 302 302 GLU GLU A . n A 1 101 LEU 101 303 303 LEU LEU A . n A 1 102 MET 102 304 304 MET MET A . n A 1 103 GLU 103 305 305 GLU GLU A . n A 1 104 GLY 104 306 306 GLY GLY A . n A 1 105 GLY 105 307 307 GLY GLY A . n A 1 106 GLU 106 308 308 GLU GLU A . n A 1 107 LEU 107 309 309 LEU LEU A . n A 1 108 PHE 108 310 310 PHE PHE A . n A 1 109 ASP 109 311 311 ASP ASP A . n A 1 110 LYS 110 312 312 LYS LYS A . n A 1 111 VAL 111 313 313 VAL VAL A . n A 1 112 VAL 112 314 314 VAL VAL A . n A 1 113 GLY 113 315 315 GLY GLY A . n A 1 114 ASN 114 316 316 ASN ASN A . n A 1 115 LYS 115 317 317 LYS LYS A . n A 1 116 ARG 116 318 318 ARG ARG A . n A 1 117 LEU 117 319 319 LEU LEU A . n A 1 118 LYS 118 320 320 LYS LYS A . n A 1 119 GLU 119 321 321 GLU GLU A . n A 1 120 ALA 120 322 322 ALA ALA A . n A 1 121 THR 121 323 323 THR THR A . n A 1 122 CYS 122 324 324 CYS CYS A . n A 1 123 LYS 123 325 325 LYS LYS A . n A 1 124 LEU 124 326 326 LEU LEU A . n A 1 125 TYR 125 327 327 TYR TYR A . n A 1 126 PHE 126 328 328 PHE PHE A . n A 1 127 TYR 127 329 329 TYR TYR A . n A 1 128 GLN 128 330 330 GLN GLN A . n A 1 129 MET 129 331 331 MET MET A . n A 1 130 LEU 130 332 332 LEU LEU A . n A 1 131 LEU 131 333 333 LEU LEU A . n A 1 132 ALA 132 334 334 ALA ALA A . n A 1 133 VAL 133 335 335 VAL VAL A . n A 1 134 GLN 134 336 336 GLN GLN A . n A 1 135 TYR 135 337 337 TYR TYR A . n A 1 136 LEU 136 338 338 LEU LEU A . n A 1 137 HIS 137 339 339 HIS HIS A . n A 1 138 GLU 138 340 340 GLU GLU A . n A 1 139 ASN 139 341 341 ASN ASN A . n A 1 140 GLY 140 342 342 GLY GLY A . n A 1 141 ILE 141 343 343 ILE ILE A . n A 1 142 ILE 142 344 344 ILE ILE A . n A 1 143 HIS 143 345 345 HIS HIS A . n A 1 144 ARG 144 346 346 ARG ARG A . n A 1 145 ASP 145 347 347 ASP ASP A . n A 1 146 LEU 146 348 348 LEU LEU A . n A 1 147 LYS 147 349 349 LYS LYS A . n A 1 148 PRO 148 350 350 PRO PRO A . n A 1 149 GLU 149 351 351 GLU GLU A . n A 1 150 ASN 150 352 352 ASN ASN A . n A 1 151 VAL 151 353 353 VAL VAL A . n A 1 152 LEU 152 354 354 LEU LEU A . n A 1 153 LEU 153 355 355 LEU LEU A . n A 1 154 SER 154 356 356 SER SER A . n A 1 155 SER 155 357 357 SER SER A . n A 1 156 GLN 156 358 358 GLN GLN A . n A 1 157 GLU 157 359 359 GLU GLU A . n A 1 158 GLU 158 360 360 GLU GLU A . n A 1 159 ASP 159 361 361 ASP ASP A . n A 1 160 CYS 160 362 362 CYS CYS A . n A 1 161 LEU 161 363 363 LEU LEU A . n A 1 162 ILE 162 364 364 ILE ILE A . n A 1 163 LYS 163 365 365 LYS LYS A . n A 1 164 ILE 164 366 366 ILE ILE A . n A 1 165 THR 165 367 367 THR THR A . n A 1 166 ASP 166 368 368 ASP ASP A . n A 1 167 PHE 167 369 369 PHE PHE A . n A 1 168 GLY 168 370 370 GLY GLY A . n A 1 169 HIS 169 371 371 HIS HIS A . n A 1 170 SER 170 372 372 SER SER A . n A 1 171 LYS 171 373 373 LYS LYS A . n A 1 172 ILE 172 374 374 ILE ILE A . n A 1 173 LEU 173 375 375 LEU LEU A . n A 1 174 GLY 174 376 376 GLY GLY A . n A 1 175 GLU 175 377 377 GLU GLU A . n A 1 176 THR 176 378 378 THR THR A . n A 1 177 SER 177 379 379 SER SER A . n A 1 178 LEU 178 380 380 LEU LEU A . n A 1 179 MET 179 381 381 MET MET A . n A 1 180 ARG 180 382 382 ARG ARG A . n A 1 181 THR 181 383 383 THR THR A . n A 1 182 LEU 182 384 384 LEU LEU A . n A 1 183 CYS 183 385 385 CYS CYS A . n A 1 184 GLY 184 386 386 GLY GLY A . n A 1 185 THR 185 387 387 THR THR A . n A 1 186 PRO 186 388 388 PRO PRO A . n A 1 187 THR 187 389 389 THR THR A . n A 1 188 TYR 188 390 390 TYR TYR A . n A 1 189 LEU 189 391 391 LEU LEU A . n A 1 190 ALA 190 392 392 ALA ALA A . n A 1 191 PRO 191 393 393 PRO PRO A . n A 1 192 GLU 192 394 394 GLU GLU A . n A 1 193 VAL 193 395 395 VAL VAL A . n A 1 194 LEU 194 396 396 LEU LEU A . n A 1 195 VAL 195 397 397 VAL VAL A . n A 1 196 SER 196 398 398 SER SER A . n A 1 197 VAL 197 399 399 VAL VAL A . n A 1 198 GLY 198 400 400 GLY GLY A . n A 1 199 THR 199 401 401 THR THR A . n A 1 200 ALA 200 402 402 ALA ALA A . n A 1 201 GLY 201 403 403 GLY GLY A . n A 1 202 TYR 202 404 404 TYR TYR A . n A 1 203 ASN 203 405 405 ASN ASN A . n A 1 204 ARG 204 406 406 ARG ARG A . n A 1 205 ALA 205 407 407 ALA ALA A . n A 1 206 VAL 206 408 408 VAL VAL A . n A 1 207 ASP 207 409 409 ASP ASP A . n A 1 208 CYS 208 410 410 CYS CYS A . n A 1 209 TRP 209 411 411 TRP TRP A . n A 1 210 SER 210 412 412 SER SER A . n A 1 211 LEU 211 413 413 LEU LEU A . n A 1 212 GLY 212 414 414 GLY GLY A . n A 1 213 VAL 213 415 415 VAL VAL A . n A 1 214 ILE 214 416 416 ILE ILE A . n A 1 215 LEU 215 417 417 LEU LEU A . n A 1 216 PHE 216 418 418 PHE PHE A . n A 1 217 ILE 217 419 419 ILE ILE A . n A 1 218 CYS 218 420 420 CYS CYS A . n A 1 219 LEU 219 421 421 LEU LEU A . n A 1 220 SER 220 422 422 SER SER A . n A 1 221 GLY 221 423 423 GLY GLY A . n A 1 222 TYR 222 424 424 TYR TYR A . n A 1 223 PRO 223 425 425 PRO PRO A . n A 1 224 PRO 224 426 426 PRO PRO A . n A 1 225 PHE 225 427 427 PHE PHE A . n A 1 226 SER 226 428 428 SER SER A . n A 1 227 GLU 227 429 429 GLU GLU A . n A 1 228 HIS 228 430 430 HIS HIS A . n A 1 229 ARG 229 431 431 ARG ARG A . n A 1 230 THR 230 432 432 THR THR A . n A 1 231 GLN 231 433 433 GLN GLN A . n A 1 232 VAL 232 434 434 VAL VAL A . n A 1 233 SER 233 435 435 SER SER A . n A 1 234 LEU 234 436 436 LEU LEU A . n A 1 235 LYS 235 437 437 LYS LYS A . n A 1 236 ASP 236 438 438 ASP ASP A . n A 1 237 GLN 237 439 439 GLN GLN A . n A 1 238 ILE 238 440 440 ILE ILE A . n A 1 239 THR 239 441 441 THR THR A . n A 1 240 SER 240 442 442 SER SER A . n A 1 241 GLY 241 443 443 GLY GLY A . n A 1 242 LYS 242 444 444 LYS LYS A . n A 1 243 TYR 243 445 445 TYR TYR A . n A 1 244 ASN 244 446 446 ASN ASN A . n A 1 245 PHE 245 447 447 PHE PHE A . n A 1 246 ILE 246 448 448 ILE ILE A . n A 1 247 PRO 247 449 449 PRO PRO A . n A 1 248 GLU 248 450 450 GLU GLU A . n A 1 249 VAL 249 451 451 VAL VAL A . n A 1 250 TRP 250 452 452 TRP TRP A . n A 1 251 ALA 251 453 453 ALA ALA A . n A 1 252 GLU 252 454 454 GLU GLU A . n A 1 253 VAL 253 455 455 VAL VAL A . n A 1 254 SER 254 456 456 SER SER A . n A 1 255 GLU 255 457 457 GLU GLU A . n A 1 256 LYS 256 458 458 LYS LYS A . n A 1 257 ALA 257 459 459 ALA ALA A . n A 1 258 LEU 258 460 460 LEU LEU A . n A 1 259 ASP 259 461 461 ASP ASP A . n A 1 260 LEU 260 462 462 LEU LEU A . n A 1 261 VAL 261 463 463 VAL VAL A . n A 1 262 LYS 262 464 464 LYS LYS A . n A 1 263 LYS 263 465 465 LYS LYS A . n A 1 264 LEU 264 466 466 LEU LEU A . n A 1 265 LEU 265 467 467 LEU LEU A . n A 1 266 VAL 266 468 468 VAL VAL A . n A 1 267 VAL 267 469 469 VAL VAL A . n A 1 268 ASP 268 470 470 ASP ASP A . n A 1 269 PRO 269 471 471 PRO PRO A . n A 1 270 LYS 270 472 472 LYS LYS A . n A 1 271 ALA 271 473 473 ALA ALA A . n A 1 272 ARG 272 474 474 ARG ARG A . n A 1 273 PHE 273 475 475 PHE PHE A . n A 1 274 THR 274 476 476 THR THR A . n A 1 275 THR 275 477 477 THR THR A . n A 1 276 GLU 276 478 478 GLU GLU A . n A 1 277 GLU 277 479 479 GLU GLU A . n A 1 278 ALA 278 480 480 ALA ALA A . n A 1 279 LEU 279 481 481 LEU LEU A . n A 1 280 ARG 280 482 482 ARG ARG A . n A 1 281 HIS 281 483 483 HIS HIS A . n A 1 282 PRO 282 484 484 PRO PRO A . n A 1 283 TRP 283 485 485 TRP TRP A . n A 1 284 LEU 284 486 486 LEU LEU A . n A 1 285 GLN 285 487 487 GLN GLN A . n A 1 286 ASP 286 488 488 ASP ASP A . n A 1 287 GLU 287 489 489 GLU GLU A . n A 1 288 ASP 288 490 490 ASP ASP A . n A 1 289 MET 289 491 491 MET MET A . n A 1 290 LYS 290 492 492 LYS LYS A . n A 1 291 ARG 291 493 493 ARG ARG A . n A 1 292 LYS 292 494 494 LYS LYS A . n A 1 293 PHE 293 495 495 PHE PHE A . n A 1 294 GLN 294 496 496 GLN GLN A . n A 1 295 ASP 295 497 497 ASP ASP A . n A 1 296 LEU 296 498 498 LEU LEU A . n A 1 297 LEU 297 499 499 LEU LEU A . n A 1 298 SER 298 500 500 SER SER A . n A 1 299 GLU 299 501 501 GLU GLU A . n A 1 300 GLU 300 502 502 GLU GLU A . n A 1 301 ASN 301 503 503 ASN ASN A . n A 1 302 GLU 302 504 504 GLU GLU A . n A 1 303 SER 303 505 505 SER SER A . n A 1 304 THR 304 506 506 THR THR A . n A 1 305 ALA 305 507 507 ALA ALA A . n A 1 306 LEU 306 508 508 LEU LEU A . n A 1 307 PRO 307 509 509 PRO PRO A . n A 1 308 GLN 308 510 510 GLN GLN A . n A 1 309 VAL 309 511 511 VAL VAL A . n A 1 310 LEU 310 512 512 LEU LEU A . n A 1 311 ALA 311 513 513 ALA ALA A . n A 1 312 GLN 312 514 ? ? ? A . n A 1 313 PRO 313 515 ? ? ? A . n A 1 314 SER 314 516 ? ? ? A . n A 1 315 THR 315 517 ? ? ? A . n A 1 316 SER 316 518 ? ? ? A . n A 1 317 ARG 317 519 ? ? ? A . n A 1 318 LYS 318 520 ? ? ? A . n A 1 319 ARG 319 521 ? ? ? A . n A 1 320 PRO 320 522 ? ? ? A . n A 1 321 ARG 321 523 ? ? ? A . n A 1 322 GLU 322 524 ? ? ? A . n A 1 323 GLY 323 525 ? ? ? A . n A 1 324 GLU 324 526 ? ? ? A . n A 1 325 ALA 325 527 ? ? ? A . n A 1 326 GLU 326 528 ? ? ? A . n A 1 327 GLY 327 529 ? ? ? A . n A 1 328 ALA 328 530 ? ? ? A . n A 1 329 GLU 329 531 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A9T 1 1514 1514 A9T A9T A . C 3 NO3 1 1515 1515 NO3 NO3 A . D 4 EDO 1 1516 1516 EDO EDO A . E 4 EDO 1 1517 1517 EDO EDO A . F 4 EDO 1 1518 1518 EDO EDO A . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . G 5 HOH 21 2021 2021 HOH HOH A . G 5 HOH 22 2022 2022 HOH HOH A . G 5 HOH 23 2023 2023 HOH HOH A . G 5 HOH 24 2024 2024 HOH HOH A . G 5 HOH 25 2025 2025 HOH HOH A . G 5 HOH 26 2026 2026 HOH HOH A . G 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 28 2028 2028 HOH HOH A . G 5 HOH 29 2029 2029 HOH HOH A . G 5 HOH 30 2030 2030 HOH HOH A . G 5 HOH 31 2031 2031 HOH HOH A . G 5 HOH 32 2032 2032 HOH HOH A . G 5 HOH 33 2033 2033 HOH HOH A . G 5 HOH 34 2034 2034 HOH HOH A . G 5 HOH 35 2035 2035 HOH HOH A . G 5 HOH 36 2036 2036 HOH HOH A . G 5 HOH 37 2037 2037 HOH HOH A . G 5 HOH 38 2038 2038 HOH HOH A . G 5 HOH 39 2039 2039 HOH HOH A . G 5 HOH 40 2040 2040 HOH HOH A . G 5 HOH 41 2041 2041 HOH HOH A . G 5 HOH 42 2042 2042 HOH HOH A . G 5 HOH 43 2043 2043 HOH HOH A . G 5 HOH 44 2044 2044 HOH HOH A . G 5 HOH 45 2045 2045 HOH HOH A . G 5 HOH 46 2046 2046 HOH HOH A . G 5 HOH 47 2047 2047 HOH HOH A . G 5 HOH 48 2048 2048 HOH HOH A . G 5 HOH 49 2049 2049 HOH HOH A . G 5 HOH 50 2050 2050 HOH HOH A . G 5 HOH 51 2051 2051 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3850 ? 1 MORE 0.6 ? 1 'SSA (A^2)' 29140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -31.1666666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-10 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.4180 -46.1038 5.9222 0.2429 0.2479 0.2299 -0.0037 0.0066 -0.0090 0.4157 4.8205 0.5849 -0.8289 0.4857 -1.0267 0.0593 -0.0722 -0.1147 -0.2258 -0.1362 0.0978 0.1576 -0.0295 0.0806 'X-RAY DIFFRACTION' 2 ? refined 8.6692 -23.1911 0.0167 0.2092 0.2231 0.3209 0.0473 -0.0442 -0.0591 0.3361 2.2995 2.9503 -0.0417 -0.1843 -0.9930 -0.0967 -0.1069 0.1611 0.1409 0.0826 0.4198 -0.2650 -0.1926 0.0563 'X-RAY DIFFRACTION' 3 ? refined 24.0693 -38.7017 23.8175 0.6038 0.7666 0.3174 0.0290 -0.0670 0.0280 3.3044 4.5190 0.3995 -1.2164 -0.7123 -0.6979 -0.1064 -0.6878 -0.1742 0.3972 0.0646 -0.6162 0.0596 0.3012 0.3690 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 209:378)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 379:488)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 489:512)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4A9T _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H- BENZIMIDAZOLE-5-CARBOXAMIDE IS REPRESENTED BY RESIDUE A9T. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 493 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 497 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 223 ? ? -138.42 -146.97 2 1 LEU A 268 ? ? -54.72 -73.12 3 1 ALA A 294 ? ? -130.54 -143.45 4 1 ARG A 346 ? ? 77.36 -3.10 5 1 ASP A 368 ? ? 73.55 81.79 6 1 GLU A 377 ? ? 56.16 -127.15 7 1 THR A 378 ? ? 99.88 134.43 8 1 GLN A 487 ? ? -80.28 30.84 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A ALA 507 ? ? N A LEU 508 ? ? 31.26 2 1 C A LEU 508 ? ? N A PRO 509 ? ? 35.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 209 ? CG ? A MET 7 CG 2 1 Y 1 A MET 209 ? SD ? A MET 7 SD 3 1 Y 1 A MET 209 ? CE ? A MET 7 CE 4 1 Y 1 A SER 228 ? OG ? A SER 26 OG 5 1 Y 1 A LYS 241 ? CE ? A LYS 39 CE 6 1 Y 1 A LYS 241 ? NZ ? A LYS 39 NZ 7 1 Y 1 A LEU 268 ? CG ? A LEU 66 CG 8 1 Y 1 A LEU 268 ? CD1 ? A LEU 66 CD1 9 1 Y 1 A LEU 268 ? CD2 ? A LEU 66 CD2 10 1 Y 1 A GLU 271 ? CG ? A GLU 69 CG 11 1 Y 1 A GLU 271 ? CD ? A GLU 69 CD 12 1 Y 1 A GLU 271 ? OE1 ? A GLU 69 OE1 13 1 Y 1 A GLU 271 ? OE2 ? A GLU 69 OE2 14 1 Y 1 A GLU 275 ? CG ? A GLU 73 CG 15 1 Y 1 A GLU 275 ? CD ? A GLU 73 CD 16 1 Y 1 A GLU 275 ? OE1 ? A GLU 73 OE1 17 1 Y 1 A GLU 275 ? OE2 ? A GLU 73 OE2 18 1 Y 1 A LYS 278 ? CE ? A LYS 76 CE 19 1 Y 1 A LYS 278 ? NZ ? A LYS 76 NZ 20 1 Y 1 A LYS 279 ? CG ? A LYS 77 CG 21 1 Y 1 A LYS 279 ? CD ? A LYS 77 CD 22 1 Y 1 A LYS 279 ? CE ? A LYS 77 CE 23 1 Y 1 A LYS 279 ? NZ ? A LYS 77 NZ 24 1 Y 1 A GLU 295 ? CD ? A GLU 93 CD 25 1 Y 1 A GLU 295 ? OE1 ? A GLU 93 OE1 26 1 Y 1 A GLU 295 ? OE2 ? A GLU 93 OE2 27 1 Y 1 A GLN 358 ? OE1 ? A GLN 156 OE1 28 1 Y 1 A GLN 358 ? NE2 ? A GLN 156 NE2 29 1 Y 1 A LYS 373 ? CD ? A LYS 171 CD 30 1 Y 1 A LYS 373 ? CE ? A LYS 171 CE 31 1 Y 1 A LYS 373 ? NZ ? A LYS 171 NZ 32 1 Y 1 A GLU 377 ? CG ? A GLU 175 CG 33 1 Y 1 A GLU 377 ? CD ? A GLU 175 CD 34 1 Y 1 A GLU 377 ? OE1 ? A GLU 175 OE1 35 1 Y 1 A GLU 377 ? OE2 ? A GLU 175 OE2 36 1 Y 1 A ARG 382 ? CG ? A ARG 180 CG 37 1 Y 1 A ARG 382 ? CD ? A ARG 180 CD 38 1 Y 1 A ARG 382 ? NE ? A ARG 180 NE 39 1 Y 1 A ARG 382 ? CZ ? A ARG 180 CZ 40 1 Y 1 A ARG 382 ? NH1 ? A ARG 180 NH1 41 1 Y 1 A ARG 382 ? NH2 ? A ARG 180 NH2 42 1 Y 1 A ARG 431 ? CG ? A ARG 229 CG 43 1 Y 1 A ARG 431 ? CD ? A ARG 229 CD 44 1 Y 1 A ARG 431 ? NE ? A ARG 229 NE 45 1 Y 1 A ARG 431 ? CZ ? A ARG 229 CZ 46 1 Y 1 A ARG 431 ? NH1 ? A ARG 229 NH1 47 1 Y 1 A ARG 431 ? NH2 ? A ARG 229 NH2 48 1 Y 1 A GLN 433 ? CG ? A GLN 231 CG 49 1 Y 1 A GLN 433 ? CD ? A GLN 231 CD 50 1 Y 1 A GLN 433 ? OE1 ? A GLN 231 OE1 51 1 Y 1 A GLN 433 ? NE2 ? A GLN 231 NE2 52 1 Y 1 A LYS 444 ? CG ? A LYS 242 CG 53 1 Y 1 A LYS 444 ? CD ? A LYS 242 CD 54 1 Y 1 A LYS 444 ? CE ? A LYS 242 CE 55 1 Y 1 A LYS 444 ? NZ ? A LYS 242 NZ 56 1 Y 1 A GLU 454 ? CD ? A GLU 252 CD 57 1 Y 1 A GLU 454 ? OE1 ? A GLU 252 OE1 58 1 Y 1 A GLU 454 ? OE2 ? A GLU 252 OE2 59 1 Y 1 A GLU 457 ? CG ? A GLU 255 CG 60 1 Y 1 A GLU 457 ? CD ? A GLU 255 CD 61 1 Y 1 A GLU 457 ? OE1 ? A GLU 255 OE1 62 1 Y 1 A GLU 457 ? OE2 ? A GLU 255 OE2 63 1 Y 1 A LYS 494 ? CE ? A LYS 292 CE 64 1 Y 1 A LYS 494 ? NZ ? A LYS 292 NZ 65 1 Y 1 A SER 505 ? OG ? A SER 303 OG 66 1 Y 1 A LEU 508 ? CG ? A LEU 306 CG 67 1 Y 1 A LEU 508 ? CD1 ? A LEU 306 CD1 68 1 Y 1 A LEU 508 ? CD2 ? A LEU 306 CD2 69 1 Y 1 A ALA 513 ? CA ? A ALA 311 CA 70 1 Y 1 A ALA 513 ? C ? A ALA 311 C 71 1 Y 1 A ALA 513 ? O ? A ALA 311 O 72 1 Y 1 A ALA 513 ? CB ? A ALA 311 CB 73 1 N 1 A A9T 1514 ? C22 ? B A9T 1 C22 74 1 N 1 A A9T 1514 ? C23 ? B A9T 1 C23 75 1 N 1 A A9T 1514 ? C24 ? B A9T 1 C24 76 1 N 1 A A9T 1514 ? C25 ? B A9T 1 C25 77 1 N 1 A A9T 1514 ? C26 ? B A9T 1 C26 78 1 N 1 A A9T 1514 ? CL1 ? B A9T 1 CL1 79 1 N 1 A A9T 1514 ? C21 ? B A9T 1 C21 80 1 N 1 A A9T 1514 ? C27 ? B A9T 1 C27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 203 ? A GLY 1 2 1 Y 1 A PRO 204 ? A PRO 2 3 1 Y 1 A LEU 205 ? A LEU 3 4 1 Y 1 A GLY 206 ? A GLY 4 5 1 Y 1 A SER 207 ? A SER 5 6 1 Y 1 A HIS 208 ? A HIS 6 7 1 Y 1 A GLY 229 ? A GLY 27 8 1 Y 1 A ALA 230 ? A ALA 28 9 1 Y 1 A CYS 231 ? A CYS 29 10 1 Y 1 A ARG 254 ? A ARG 52 11 1 Y 1 A LYS 255 ? A LYS 53 12 1 Y 1 A PHE 256 ? A PHE 54 13 1 Y 1 A ALA 257 ? A ALA 55 14 1 Y 1 A ILE 258 ? A ILE 56 15 1 Y 1 A GLY 259 ? A GLY 57 16 1 Y 1 A SER 260 ? A SER 58 17 1 Y 1 A ALA 261 ? A ALA 59 18 1 Y 1 A ARG 262 ? A ARG 60 19 1 Y 1 A GLU 263 ? A GLU 61 20 1 Y 1 A ALA 264 ? A ALA 62 21 1 Y 1 A ASP 265 ? A ASP 63 22 1 Y 1 A GLN 514 ? A GLN 312 23 1 Y 1 A PRO 515 ? A PRO 313 24 1 Y 1 A SER 516 ? A SER 314 25 1 Y 1 A THR 517 ? A THR 315 26 1 Y 1 A SER 518 ? A SER 316 27 1 Y 1 A ARG 519 ? A ARG 317 28 1 Y 1 A LYS 520 ? A LYS 318 29 1 Y 1 A ARG 521 ? A ARG 319 30 1 Y 1 A PRO 522 ? A PRO 320 31 1 Y 1 A ARG 523 ? A ARG 321 32 1 Y 1 A GLU 524 ? A GLU 322 33 1 Y 1 A GLY 525 ? A GLY 323 34 1 Y 1 A GLU 526 ? A GLU 324 35 1 Y 1 A ALA 527 ? A ALA 325 36 1 Y 1 A GLU 528 ? A GLU 326 37 1 Y 1 A GLY 529 ? A GLY 327 38 1 Y 1 A ALA 530 ? A ALA 328 39 1 Y 1 A GLU 531 ? A GLU 329 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A9T C1 C N N 1 A9T N1 N N N 2 A9T O1 O N N 3 A9T C2 C Y N 4 A9T C3 C Y N 5 A9T N3 N Y N 6 A9T C4 C Y N 7 A9T N4 N Y N 8 A9T C5 C Y N 9 A9T C6 C Y N 10 A9T C7 C Y N 11 A9T C8 C Y N 12 A9T C9 C Y N 13 A9T C10 C Y N 14 A9T C11 C Y N 15 A9T C12 C Y N 16 A9T C13 C Y N 17 A9T C14 C Y N 18 A9T C20 C N N 19 A9T C19 C N N 20 A9T C18 C N N 21 A9T C17 C N N 22 A9T C16 C N N 23 A9T NBG N N N 24 A9T CAS C N N 25 A9T OAB O N N 26 A9T C22 C Y N 27 A9T C23 C Y N 28 A9T C24 C Y N 29 A9T C25 C Y N 30 A9T C26 C Y N 31 A9T CL1 CL N N 32 A9T C21 C N N 33 A9T C27 C Y N 34 A9T H23 H N N 35 A9T H24 H N N 36 A9T H26 H N N 37 A9T H21 H N N 38 A9T H22 H N N 39 A9T H27 H N N 40 A9T H11N H N N 41 A9T H12N H N N 42 A9T HAS1 H N N 43 A9T HAS2 H N N 44 A9T H3 H N N 45 A9T H8 H N N 46 A9T H4 H N N 47 A9T H7 H N N 48 A9T H10 H N N 49 A9T H14 H N N 50 A9T H11 H N N 51 A9T H13 H N N 52 A9T H161 H N N 53 A9T H162 H N N 54 A9T H171 H N N 55 A9T H172 H N N 56 A9T H18 H N N 57 A9T H191 H N N 58 A9T H192 H N N 59 A9T H201 H N N 60 A9T H202 H N N 61 ALA N N N N 62 ALA CA C N S 63 ALA C C N N 64 ALA O O N N 65 ALA CB C N N 66 ALA OXT O N N 67 ALA H H N N 68 ALA H2 H N N 69 ALA HA H N N 70 ALA HB1 H N N 71 ALA HB2 H N N 72 ALA HB3 H N N 73 ALA HXT H N N 74 ARG N N N N 75 ARG CA C N S 76 ARG C C N N 77 ARG O O N N 78 ARG CB C N N 79 ARG CG C N N 80 ARG CD C N N 81 ARG NE N N N 82 ARG CZ C N N 83 ARG NH1 N N N 84 ARG NH2 N N N 85 ARG OXT O N N 86 ARG H H N N 87 ARG H2 H N N 88 ARG HA H N N 89 ARG HB2 H N N 90 ARG HB3 H N N 91 ARG HG2 H N N 92 ARG HG3 H N N 93 ARG HD2 H N N 94 ARG HD3 H N N 95 ARG HE H N N 96 ARG HH11 H N N 97 ARG HH12 H N N 98 ARG HH21 H N N 99 ARG HH22 H N N 100 ARG HXT H N N 101 ASN N N N N 102 ASN CA C N S 103 ASN C C N N 104 ASN O O N N 105 ASN CB C N N 106 ASN CG C N N 107 ASN OD1 O N N 108 ASN ND2 N N N 109 ASN OXT O N N 110 ASN H H N N 111 ASN H2 H N N 112 ASN HA H N N 113 ASN HB2 H N N 114 ASN HB3 H N N 115 ASN HD21 H N N 116 ASN HD22 H N N 117 ASN HXT H N N 118 ASP N N N N 119 ASP CA C N S 120 ASP C C N N 121 ASP O O N N 122 ASP CB C N N 123 ASP CG C N N 124 ASP OD1 O N N 125 ASP OD2 O N N 126 ASP OXT O N N 127 ASP H H N N 128 ASP H2 H N N 129 ASP HA H N N 130 ASP HB2 H N N 131 ASP HB3 H N N 132 ASP HD2 H N N 133 ASP HXT H N N 134 CYS N N N N 135 CYS CA C N R 136 CYS C C N N 137 CYS O O N N 138 CYS CB C N N 139 CYS SG S N N 140 CYS OXT O N N 141 CYS H H N N 142 CYS H2 H N N 143 CYS HA H N N 144 CYS HB2 H N N 145 CYS HB3 H N N 146 CYS HG H N N 147 CYS HXT H N N 148 EDO C1 C N N 149 EDO O1 O N N 150 EDO C2 C N N 151 EDO O2 O N N 152 EDO H11 H N N 153 EDO H12 H N N 154 EDO HO1 H N N 155 EDO H21 H N N 156 EDO H22 H N N 157 EDO HO2 H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 NO3 N N N N 321 NO3 O1 O N N 322 NO3 O2 O N N 323 NO3 O3 O N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A9T C1 N1 sing N N 1 A9T C1 C2 sing N N 2 A9T C1 OAB doub N N 3 A9T O1 C12 sing N N 4 A9T O1 CAS sing N N 5 A9T C2 C3 sing Y N 6 A9T C2 C8 doub Y N 7 A9T C3 C4 doub Y N 8 A9T N3 C4 sing Y N 9 A9T N3 C5 doub Y N 10 A9T C4 C6 sing Y N 11 A9T N4 C5 sing Y N 12 A9T N4 C6 sing Y N 13 A9T C5 C9 sing N N 14 A9T C6 C7 doub Y N 15 A9T C7 C8 sing Y N 16 A9T C9 C10 sing Y N 17 A9T C9 C14 doub Y N 18 A9T C10 C11 doub Y N 19 A9T C11 C12 sing Y N 20 A9T C12 C13 doub Y N 21 A9T C13 C14 sing Y N 22 A9T C16 C17 sing N N 23 A9T C16 NBG sing N N 24 A9T C17 C18 sing N N 25 A9T C18 C19 sing N N 26 A9T C18 CAS sing N N 27 A9T C19 C20 sing N N 28 A9T C20 NBG sing N N 29 A9T C21 NBG sing N N 30 A9T C22 C23 doub Y N 31 A9T C22 C21 sing N N 32 A9T C22 C27 sing Y N 33 A9T C23 C24 sing Y N 34 A9T C23 H23 sing N N 35 A9T C24 C25 doub Y N 36 A9T C24 H24 sing N N 37 A9T C25 C26 sing Y N 38 A9T C25 CL1 sing N N 39 A9T C26 C27 doub Y N 40 A9T C26 H26 sing N N 41 A9T C21 H21 sing N N 42 A9T C21 H22 sing N N 43 A9T C27 H27 sing N N 44 A9T N1 H11N sing N N 45 A9T N1 H12N sing N N 46 A9T CAS HAS1 sing N N 47 A9T CAS HAS2 sing N N 48 A9T C3 H3 sing N N 49 A9T C8 H8 sing N N 50 A9T N4 H4 sing N N 51 A9T C7 H7 sing N N 52 A9T C10 H10 sing N N 53 A9T C14 H14 sing N N 54 A9T C11 H11 sing N N 55 A9T C13 H13 sing N N 56 A9T C16 H161 sing N N 57 A9T C16 H162 sing N N 58 A9T C17 H171 sing N N 59 A9T C17 H172 sing N N 60 A9T C18 H18 sing N N 61 A9T C19 H191 sing N N 62 A9T C19 H192 sing N N 63 A9T C20 H201 sing N N 64 A9T C20 H202 sing N N 65 ALA N CA sing N N 66 ALA N H sing N N 67 ALA N H2 sing N N 68 ALA CA C sing N N 69 ALA CA CB sing N N 70 ALA CA HA sing N N 71 ALA C O doub N N 72 ALA C OXT sing N N 73 ALA CB HB1 sing N N 74 ALA CB HB2 sing N N 75 ALA CB HB3 sing N N 76 ALA OXT HXT sing N N 77 ARG N CA sing N N 78 ARG N H sing N N 79 ARG N H2 sing N N 80 ARG CA C sing N N 81 ARG CA CB sing N N 82 ARG CA HA sing N N 83 ARG C O doub N N 84 ARG C OXT sing N N 85 ARG CB CG sing N N 86 ARG CB HB2 sing N N 87 ARG CB HB3 sing N N 88 ARG CG CD sing N N 89 ARG CG HG2 sing N N 90 ARG CG HG3 sing N N 91 ARG CD NE sing N N 92 ARG CD HD2 sing N N 93 ARG CD HD3 sing N N 94 ARG NE CZ sing N N 95 ARG NE HE sing N N 96 ARG CZ NH1 sing N N 97 ARG CZ NH2 doub N N 98 ARG NH1 HH11 sing N N 99 ARG NH1 HH12 sing N N 100 ARG NH2 HH21 sing N N 101 ARG NH2 HH22 sing N N 102 ARG OXT HXT sing N N 103 ASN N CA sing N N 104 ASN N H sing N N 105 ASN N H2 sing N N 106 ASN CA C sing N N 107 ASN CA CB sing N N 108 ASN CA HA sing N N 109 ASN C O doub N N 110 ASN C OXT sing N N 111 ASN CB CG sing N N 112 ASN CB HB2 sing N N 113 ASN CB HB3 sing N N 114 ASN CG OD1 doub N N 115 ASN CG ND2 sing N N 116 ASN ND2 HD21 sing N N 117 ASN ND2 HD22 sing N N 118 ASN OXT HXT sing N N 119 ASP N CA sing N N 120 ASP N H sing N N 121 ASP N H2 sing N N 122 ASP CA C sing N N 123 ASP CA CB sing N N 124 ASP CA HA sing N N 125 ASP C O doub N N 126 ASP C OXT sing N N 127 ASP CB CG sing N N 128 ASP CB HB2 sing N N 129 ASP CB HB3 sing N N 130 ASP CG OD1 doub N N 131 ASP CG OD2 sing N N 132 ASP OD2 HD2 sing N N 133 ASP OXT HXT sing N N 134 CYS N CA sing N N 135 CYS N H sing N N 136 CYS N H2 sing N N 137 CYS CA C sing N N 138 CYS CA CB sing N N 139 CYS CA HA sing N N 140 CYS C O doub N N 141 CYS C OXT sing N N 142 CYS CB SG sing N N 143 CYS CB HB2 sing N N 144 CYS CB HB3 sing N N 145 CYS SG HG sing N N 146 CYS OXT HXT sing N N 147 EDO C1 O1 sing N N 148 EDO C1 C2 sing N N 149 EDO C1 H11 sing N N 150 EDO C1 H12 sing N N 151 EDO O1 HO1 sing N N 152 EDO C2 O2 sing N N 153 EDO C2 H21 sing N N 154 EDO C2 H22 sing N N 155 EDO O2 HO2 sing N N 156 GLN N CA sing N N 157 GLN N H sing N N 158 GLN N H2 sing N N 159 GLN CA C sing N N 160 GLN CA CB sing N N 161 GLN CA HA sing N N 162 GLN C O doub N N 163 GLN C OXT sing N N 164 GLN CB CG sing N N 165 GLN CB HB2 sing N N 166 GLN CB HB3 sing N N 167 GLN CG CD sing N N 168 GLN CG HG2 sing N N 169 GLN CG HG3 sing N N 170 GLN CD OE1 doub N N 171 GLN CD NE2 sing N N 172 GLN NE2 HE21 sing N N 173 GLN NE2 HE22 sing N N 174 GLN OXT HXT sing N N 175 GLU N CA sing N N 176 GLU N H sing N N 177 GLU N H2 sing N N 178 GLU CA C sing N N 179 GLU CA CB sing N N 180 GLU CA HA sing N N 181 GLU C O doub N N 182 GLU C OXT sing N N 183 GLU CB CG sing N N 184 GLU CB HB2 sing N N 185 GLU CB HB3 sing N N 186 GLU CG CD sing N N 187 GLU CG HG2 sing N N 188 GLU CG HG3 sing N N 189 GLU CD OE1 doub N N 190 GLU CD OE2 sing N N 191 GLU OE2 HE2 sing N N 192 GLU OXT HXT sing N N 193 GLY N CA sing N N 194 GLY N H sing N N 195 GLY N H2 sing N N 196 GLY CA C sing N N 197 GLY CA HA2 sing N N 198 GLY CA HA3 sing N N 199 GLY C O doub N N 200 GLY C OXT sing N N 201 GLY OXT HXT sing N N 202 HIS N CA sing N N 203 HIS N H sing N N 204 HIS N H2 sing N N 205 HIS CA C sing N N 206 HIS CA CB sing N N 207 HIS CA HA sing N N 208 HIS C O doub N N 209 HIS C OXT sing N N 210 HIS CB CG sing N N 211 HIS CB HB2 sing N N 212 HIS CB HB3 sing N N 213 HIS CG ND1 sing Y N 214 HIS CG CD2 doub Y N 215 HIS ND1 CE1 doub Y N 216 HIS ND1 HD1 sing N N 217 HIS CD2 NE2 sing Y N 218 HIS CD2 HD2 sing N N 219 HIS CE1 NE2 sing Y N 220 HIS CE1 HE1 sing N N 221 HIS NE2 HE2 sing N N 222 HIS OXT HXT sing N N 223 HOH O H1 sing N N 224 HOH O H2 sing N N 225 ILE N CA sing N N 226 ILE N H sing N N 227 ILE N H2 sing N N 228 ILE CA C sing N N 229 ILE CA CB sing N N 230 ILE CA HA sing N N 231 ILE C O doub N N 232 ILE C OXT sing N N 233 ILE CB CG1 sing N N 234 ILE CB CG2 sing N N 235 ILE CB HB sing N N 236 ILE CG1 CD1 sing N N 237 ILE CG1 HG12 sing N N 238 ILE CG1 HG13 sing N N 239 ILE CG2 HG21 sing N N 240 ILE CG2 HG22 sing N N 241 ILE CG2 HG23 sing N N 242 ILE CD1 HD11 sing N N 243 ILE CD1 HD12 sing N N 244 ILE CD1 HD13 sing N N 245 ILE OXT HXT sing N N 246 LEU N CA sing N N 247 LEU N H sing N N 248 LEU N H2 sing N N 249 LEU CA C sing N N 250 LEU CA CB sing N N 251 LEU CA HA sing N N 252 LEU C O doub N N 253 LEU C OXT sing N N 254 LEU CB CG sing N N 255 LEU CB HB2 sing N N 256 LEU CB HB3 sing N N 257 LEU CG CD1 sing N N 258 LEU CG CD2 sing N N 259 LEU CG HG sing N N 260 LEU CD1 HD11 sing N N 261 LEU CD1 HD12 sing N N 262 LEU CD1 HD13 sing N N 263 LEU CD2 HD21 sing N N 264 LEU CD2 HD22 sing N N 265 LEU CD2 HD23 sing N N 266 LEU OXT HXT sing N N 267 LYS N CA sing N N 268 LYS N H sing N N 269 LYS N H2 sing N N 270 LYS CA C sing N N 271 LYS CA CB sing N N 272 LYS CA HA sing N N 273 LYS C O doub N N 274 LYS C OXT sing N N 275 LYS CB CG sing N N 276 LYS CB HB2 sing N N 277 LYS CB HB3 sing N N 278 LYS CG CD sing N N 279 LYS CG HG2 sing N N 280 LYS CG HG3 sing N N 281 LYS CD CE sing N N 282 LYS CD HD2 sing N N 283 LYS CD HD3 sing N N 284 LYS CE NZ sing N N 285 LYS CE HE2 sing N N 286 LYS CE HE3 sing N N 287 LYS NZ HZ1 sing N N 288 LYS NZ HZ2 sing N N 289 LYS NZ HZ3 sing N N 290 LYS OXT HXT sing N N 291 MET N CA sing N N 292 MET N H sing N N 293 MET N H2 sing N N 294 MET CA C sing N N 295 MET CA CB sing N N 296 MET CA HA sing N N 297 MET C O doub N N 298 MET C OXT sing N N 299 MET CB CG sing N N 300 MET CB HB2 sing N N 301 MET CB HB3 sing N N 302 MET CG SD sing N N 303 MET CG HG2 sing N N 304 MET CG HG3 sing N N 305 MET SD CE sing N N 306 MET CE HE1 sing N N 307 MET CE HE2 sing N N 308 MET CE HE3 sing N N 309 MET OXT HXT sing N N 310 NO3 N O1 doub N N 311 NO3 N O2 sing N N 312 NO3 N O3 sing N N 313 PHE N CA sing N N 314 PHE N H sing N N 315 PHE N H2 sing N N 316 PHE CA C sing N N 317 PHE CA CB sing N N 318 PHE CA HA sing N N 319 PHE C O doub N N 320 PHE C OXT sing N N 321 PHE CB CG sing N N 322 PHE CB HB2 sing N N 323 PHE CB HB3 sing N N 324 PHE CG CD1 doub Y N 325 PHE CG CD2 sing Y N 326 PHE CD1 CE1 sing Y N 327 PHE CD1 HD1 sing N N 328 PHE CD2 CE2 doub Y N 329 PHE CD2 HD2 sing N N 330 PHE CE1 CZ doub Y N 331 PHE CE1 HE1 sing N N 332 PHE CE2 CZ sing Y N 333 PHE CE2 HE2 sing N N 334 PHE CZ HZ sing N N 335 PHE OXT HXT sing N N 336 PRO N CA sing N N 337 PRO N CD sing N N 338 PRO N H sing N N 339 PRO CA C sing N N 340 PRO CA CB sing N N 341 PRO CA HA sing N N 342 PRO C O doub N N 343 PRO C OXT sing N N 344 PRO CB CG sing N N 345 PRO CB HB2 sing N N 346 PRO CB HB3 sing N N 347 PRO CG CD sing N N 348 PRO CG HG2 sing N N 349 PRO CG HG3 sing N N 350 PRO CD HD2 sing N N 351 PRO CD HD3 sing N N 352 PRO OXT HXT sing N N 353 SER N CA sing N N 354 SER N H sing N N 355 SER N H2 sing N N 356 SER CA C sing N N 357 SER CA CB sing N N 358 SER CA HA sing N N 359 SER C O doub N N 360 SER C OXT sing N N 361 SER CB OG sing N N 362 SER CB HB2 sing N N 363 SER CB HB3 sing N N 364 SER OG HG sing N N 365 SER OXT HXT sing N N 366 THR N CA sing N N 367 THR N H sing N N 368 THR N H2 sing N N 369 THR CA C sing N N 370 THR CA CB sing N N 371 THR CA HA sing N N 372 THR C O doub N N 373 THR C OXT sing N N 374 THR CB OG1 sing N N 375 THR CB CG2 sing N N 376 THR CB HB sing N N 377 THR OG1 HG1 sing N N 378 THR CG2 HG21 sing N N 379 THR CG2 HG22 sing N N 380 THR CG2 HG23 sing N N 381 THR OXT HXT sing N N 382 TRP N CA sing N N 383 TRP N H sing N N 384 TRP N H2 sing N N 385 TRP CA C sing N N 386 TRP CA CB sing N N 387 TRP CA HA sing N N 388 TRP C O doub N N 389 TRP C OXT sing N N 390 TRP CB CG sing N N 391 TRP CB HB2 sing N N 392 TRP CB HB3 sing N N 393 TRP CG CD1 doub Y N 394 TRP CG CD2 sing Y N 395 TRP CD1 NE1 sing Y N 396 TRP CD1 HD1 sing N N 397 TRP CD2 CE2 doub Y N 398 TRP CD2 CE3 sing Y N 399 TRP NE1 CE2 sing Y N 400 TRP NE1 HE1 sing N N 401 TRP CE2 CZ2 sing Y N 402 TRP CE3 CZ3 doub Y N 403 TRP CE3 HE3 sing N N 404 TRP CZ2 CH2 doub Y N 405 TRP CZ2 HZ2 sing N N 406 TRP CZ3 CH2 sing Y N 407 TRP CZ3 HZ3 sing N N 408 TRP CH2 HH2 sing N N 409 TRP OXT HXT sing N N 410 TYR N CA sing N N 411 TYR N H sing N N 412 TYR N H2 sing N N 413 TYR CA C sing N N 414 TYR CA CB sing N N 415 TYR CA HA sing N N 416 TYR C O doub N N 417 TYR C OXT sing N N 418 TYR CB CG sing N N 419 TYR CB HB2 sing N N 420 TYR CB HB3 sing N N 421 TYR CG CD1 doub Y N 422 TYR CG CD2 sing Y N 423 TYR CD1 CE1 sing Y N 424 TYR CD1 HD1 sing N N 425 TYR CD2 CE2 doub Y N 426 TYR CD2 HD2 sing N N 427 TYR CE1 CZ doub Y N 428 TYR CE1 HE1 sing N N 429 TYR CE2 CZ sing Y N 430 TYR CE2 HE2 sing N N 431 TYR CZ OH sing N N 432 TYR OH HH sing N N 433 TYR OXT HXT sing N N 434 VAL N CA sing N N 435 VAL N H sing N N 436 VAL N H2 sing N N 437 VAL CA C sing N N 438 VAL CA CB sing N N 439 VAL CA HA sing N N 440 VAL C O doub N N 441 VAL C OXT sing N N 442 VAL CB CG1 sing N N 443 VAL CB CG2 sing N N 444 VAL CB HB sing N N 445 VAL CG1 HG11 sing N N 446 VAL CG1 HG12 sing N N 447 VAL CG1 HG13 sing N N 448 VAL CG2 HG21 sing N N 449 VAL CG2 HG22 sing N N 450 VAL CG2 HG23 sing N N 451 VAL OXT HXT sing N N 452 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE' A9T 3 'NITRATE ION' NO3 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WTJ _pdbx_initial_refinement_model.details 'PDB ENTRY 2WTJ' #