HEADER TRANSPORT PROTEIN 11-DEC-11 4ABU TITLE CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-144; COMPND 5 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PMMHA KEYWDS TRANSPORT PROTEIN, HORMONE, AMYLOIDOSIS INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR D.TOMAR,T.KHAN,R.R.SINGH,S.MISHRA,S.GUPTA,A.SUROLIA,D.M.SALUNKE REVDAT 5 20-DEC-23 4ABU 1 REMARK REVDAT 4 17-JUL-19 4ABU 1 REMARK REVDAT 3 06-FEB-19 4ABU 1 REMARK REVDAT 2 30-JAN-19 4ABU 1 REMARK REVDAT 1 26-SEP-12 4ABU 0 JRNL AUTH D.TOMAR,T.KHAN,R.R.SINGH,S.MISHRA,S.GUPTA,A.SUROLIA, JRNL AUTH 2 D.M.SALUNKE JRNL TITL CRYSTALLOGRAPHIC STUDY OF NOVEL TRANSTHYRETIN LIGANDS JRNL TITL 2 EXHIBITING NEGATIVE-COOPERATIVITY BETWEEN TWO THYROXINE JRNL TITL 3 BINDING SITES. JRNL REF PLOS ONE V. 7 43522 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22973437 JRNL DOI 10.1371/JOURNAL.PONE.0043522 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1383 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1854 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2533 ; 2.069 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 5.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;38.357 ;24.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;16.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.518 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1416 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1148 ; 1.580 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1862 ; 2.812 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 706 ; 3.984 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 671 ; 6.140 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. FT1 A 1125 AND FT1 B REMARK 3 1125 GENERATE CLOSE CONTACTS WITH COPIES RELATED BY A TWO-FOLD REMARK 3 CRYSTALLOGRAPHIC AXIS. THEIR OCCUPANCIES HAVE THEREFORE BEEN REMARK 3 DEFINED AS 0.5. REMARK 4 REMARK 4 4ABU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER CMF12 38CU-6 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 35.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DVQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM CHLORIDE, POTASSIUM REMARK 280 PHOSPHATE, AMMONIUM SULFATE, PH 7.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2065 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2054 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 10 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ILE A 107 CG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ASN A 124 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 64 69.72 -105.32 REMARK 500 PHE B 64 76.21 -103.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FT1 A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FT1 B 1125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G9K RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH REMARK 900 HYDROXYLATEDPOLYCHLORINATED BIPHENYL-4-HYDROXY-2',3,3',4 ',5- REMARK 900 PENTACHLOROBIPHENYL REMARK 900 RELATED ID: 1DVY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH N-( M- REMARK 900 TRIFLUOROMETHYLPHENYL) PHENOXAZINE-4,6-DICARBOXYLIC ACID REMARK 900 RELATED ID: 1ETA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (PREALBUMIN) NATURALLY OCCURRING VARIANT WITH 1:1 MIX REMARK 900 OF VAL AND MET AT POSITION 30 COMPLEXED WITH THYROXINE (3,5,3',5'- REMARK 900 TETRAIODO-L-THYRONINE) REMARK 900 RELATED ID: 2B9A RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH DIFLUNISALANALOGUES - REMARK 900 TTR.3',5'-DIFLUOROBIPHENYL-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 1TTR RELATED DB: PDB REMARK 900 TRANSTHYRETIN - V/122/I CARDIOMYOPATHIC MUTANT REMARK 900 RELATED ID: 4AC2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-7 REMARK 900 RELATED ID: 1III RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT TTR Y114C -DATA REMARK 900 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 1DVT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN IN COMPLEX WITH REMARK 900 FLURBIPROFEN REMARK 900 RELATED ID: 1BZE RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1IJN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT TTR C10A/ Y114C REMARK 900 RELATED ID: 1BZD RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1TT6 RELATED DB: PDB REMARK 900 THE ORTHORHOMBIC CRYSTAL STRUCTURE OF TRANSTHYRETIN INCOMPLEX WITH REMARK 900 DIETHYLSTILBESTROL REMARK 900 RELATED ID: 1E3F RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 2B77 RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH DIFLUNISALANALOGUES - REMARK 900 TTR.2',4'-DICHLORO-4-HYDROXY-1,1'-BIPHENYL-3- CARBOXYLIC ACID REMARK 900 RELATED ID: 1TLM RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH MILRINONE REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN AT 1.5A RESOLUTION REMARK 900 RELATED ID: 1TYR RELATED DB: PDB REMARK 900 TRANSTHYRETIN COMPLEX WITH RETINOIC ACID REMARK 900 RELATED ID: 1E5A RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 4ACT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-17 REMARK 900 RELATED ID: 2PAB RELATED DB: PDB REMARK 900 PREALBUMIN (HUMAN PLASMA) REMARK 900 RELATED ID: 1SOK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT A108Y/ L110ESOLVED IN REMARK 900 SPACE GROUP P21212 REMARK 900 RELATED ID: 2WQA RELATED DB: PDB REMARK 900 COMPLEX OF TTR AND RBP4 AND OLEIC ACID REMARK 900 RELATED ID: 1E4H RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 2ROX RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH THYROXINE (T4) REMARK 900 RELATED ID: 2B15 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF 2,4-DINITROPHENOL IN COMPLEX WITHHUMAN REMARK 900 TRANSTHYRETIN REMARK 900 RELATED ID: 1FHN RELATED DB: PDB REMARK 900 TRANSTHYRETIN STABILITY AS A KEY FACTOR IN AMYLOIDOGENESIS REMARK 900 RELATED ID: 1FH2 RELATED DB: PDB REMARK 900 TRANSTHYRETIN STABILITY AS A KEY FACTOR IN AMYLOIDOGENESIS REMARK 900 RELATED ID: 1G1O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HIGHLY AMYLOIDOGENIC TRANSTHYRETINMUTANT REMARK 900 TTR G53S/E54D/L55S REMARK 900 RELATED ID: 4ABQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-1 REMARK 900 RELATED ID: 2B16 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF 2,4-DINITROPHENOL IN COMPLEX WITHTHE REMARK 900 AMYLOIDOGENIC VARIANT TRANSTHYRETIN TYR78PHE REMARK 900 RELATED ID: 2F8I RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH BENZOXAZOLE REMARK 900 RELATED ID: 1IIK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT TTR Y114C -DATA REMARK 900 COLLECTED AT CRYO TEMPERATURE REMARK 900 RELATED ID: 1TTA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) REMARK 900 RELATED ID: 1BMZ RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (PREALBUMIN) REMARK 900 RELATED ID: 2B14 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF 2,4-DINITROPHENOL IN COMPLEX WITHTHE REMARK 900 AMYLOIDOGENIC VARIANT TRANSTHYRETIN LEU 55 PRO REMARK 900 RELATED ID: 1DVS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN IN COMPLEX WITH RESVERATROL REMARK 900 RELATED ID: 1Z7J RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3,3',5,5'- REMARK 900 TETRAIODOTHYROACETIC ACID (T4AC) REMARK 900 RELATED ID: 1GKO RELATED DB: PDB REMARK 900 AN ENGINEERED TRANSTHYRETIN MONOMER THAT IS NON- AMYLOIDOGENIC - REMARK 900 UNLESS PARTIALLY DENATURED REMARK 900 RELATED ID: 2FLM RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH BIVALANT AMYLOIDINHIBITOR REMARK 900 (6 CARBON LINKER) REMARK 900 RELATED ID: 2FBR RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH BIVALANT AMYLOIDINHIBITOR REMARK 900 (4 CORBON LINKER) REMARK 900 RELATED ID: 2TRY RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1DVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN IN COMPLEX WITH REMARK 900 DIBENZOFURAN- 4,6-DICARBOXYLIC ACID REMARK 900 RELATED ID: 1BZ8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (DEL VAL122) REMARK 900 RELATED ID: 1TTB RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) MUTANT WITH ALA 109 REPLACED BY REMARK 900 THR (A109T) REMARK 900 RELATED ID: 1THC RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5 '-DIBROMO- REMARK 900 2',4,4',6-TETRA-HYDROXYAURONE REMARK 900 RELATED ID: 1DVZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN IN COMPLEX WITH O- REMARK 900 TRIFLUOROMETHYLPHENYL ANTHRANILIC ACID REMARK 900 RELATED ID: 1QWH RELATED DB: PDB REMARK 900 A COVALENT DIMER OF TRANSTHYRETIN THAT AFFECTS THE AMYLOIDPATHWAY REMARK 900 RELATED ID: 1DVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN REMARK 900 RELATED ID: 1THA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3,3 '-DIIODO-L- REMARK 900 THYRONINE REMARK 900 RELATED ID: 1QAB RELATED DB: PDB REMARK 900 THE STRUCTURE OF HUMAN RETINOL BINDING PROTEIN WITH ITSCARRIER REMARK 900 PROTEIN TRANSTHYRETIN REVEALS INTERACTION WITH THECARBOXY TERMINUS REMARK 900 OF RBP REMARK 900 RELATED ID: 1Y1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITHIODODIFLUNISAL REMARK 900 RELATED ID: 1F86 RELATED DB: PDB REMARK 900 TRANSTHYRETIN THR119MET PROTEIN STABILISATION REMARK 900 RELATED ID: 1U21 RELATED DB: PDB REMARK 900 TRANSTHYRETIN WITH TETHERED INHIBITOR ON ONE MONOMER. REMARK 900 RELATED ID: 1SOQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT A108Y/ L110ESOLVED IN REMARK 900 SPACE GROUP C2 REMARK 900 RELATED ID: 2F7I RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH DIFLUNISALANALOGUES - TTR. REMARK 900 2',6'-DIFLUOROBIPHENYL-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 1X7S RELATED DB: PDB REMARK 900 THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE AMYLOIDOGENICVARIANT REMARK 900 TTR TYR78PHE REMARK 900 RELATED ID: 4ABV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-3 REMARK 900 RELATED ID: 1ZCR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN WITH BOUND IODIDE REMARK 900 RELATED ID: 1ICT RELATED DB: PDB REMARK 900 MONOCLINIC FORM OF HUMAN TRANSTHYRETIN COMPLEXED WITHTHYROXINE (T4) REMARK 900 RELATED ID: 1TTC RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) MUTANT WITH VAL 30 REPLACED BY REMARK 900 MET (V30M) REMARK 900 RELATED ID: 1DVX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN IN COMPLEX WITH DICLOFENAC REMARK 900 RELATED ID: 1BM7 RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (PREALBUMIN) COMPLEX WITH FLUFENAMIC ACID (2- REMARK 900 [[3-(TRIFLUOROMETHYL)PHENYL]AMINO] BENZOIC ACID ) REMARK 900 RELATED ID: 2ROY RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5 '-DINITRO- REMARK 900 N-ACETYL-L-THYRONINE REMARK 900 RELATED ID: 1TZ8 RELATED DB: PDB REMARK 900 THE MONOCLINIC CRYSTAL STRUTURE OF TRANSTHYRETIN IN COMPLEXWITH REMARK 900 DIETHYLSTILBESTROL REMARK 900 RELATED ID: 1ETB RELATED DB: PDB REMARK 900 TRANSTHYRETIN (PREALBUMIN) MUTANT WITH ALA 109 REPLACED BY THR REMARK 900 (A109T) COMPLEXED WITH THYROXINE (3,5,3',5'- TETRAIODO-L-THYRONINE) REMARK 900 RELATED ID: 1RLB RELATED DB: PDB REMARK 900 RETINOL BINDING PROTEIN COMPLEXED WITH TRANSTHYRETIN 1RLB 3 REMARK 900 RELATED ID: 5TTR RELATED DB: PDB REMARK 900 LEU 55 PRO TRANSTHYRETIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1F64 RELATED DB: PDB REMARK 900 LEU55PRO TTR-IDOX THEORETICAL MODEL REMARK 900 RELATED ID: 2G5U RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH REMARK 900 HYDROXYLATEDPOLYCHLORINATED BIPHENYL-4,4'-DIHYDROXY-3,3', 5,5'- REMARK 900 TETRACHLOROBIPHENYL REMARK 900 RELATED ID: 2GAB RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (TTR) COMPLEXED WITH REMARK 900 HYDROXYLATEDPOLYCHLORINATED BIPHENYL-4-HYDROXY-3,3',5,4 '- REMARK 900 TETRACHLOROBIPHENYL REMARK 900 RELATED ID: 4AC4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-18 REMARK 900 RELATED ID: 1X7T RELATED DB: PDB REMARK 900 STRUCTURE OF TTR R104H: A NON-AMYLOIDOGENIC VARIANT WITHPROTECTIVE REMARK 900 CLINICAL EFFECTS REMARK 900 RELATED ID: 2TRH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1TSH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1ZD6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN WITH BOUND CHLORIDE REMARK 900 RELATED ID: 4ABW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-6 REMARK 900 RELATED ID: 4ANK RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STUDY OF NOVEL TRANSTHYRETIN LIGANDS EXHIBITING REMARK 900 NEGATIVE-COOPERATIVITY BETWEEN TWO T4 BINDING SITES. DBREF 4ABU A 1 124 UNP P02766 TTHY_HUMAN 21 144 DBREF 4ABU B 1 124 UNP P02766 TTHY_HUMAN 21 144 SEQRES 1 A 124 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 124 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 124 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 124 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 124 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 124 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 124 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 124 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 124 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 124 THR THR ALA VAL VAL THR ASN SEQRES 1 B 124 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 124 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 124 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 124 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 124 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 124 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 124 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 124 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 124 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 124 THR THR ALA VAL VAL THR ASN HET FT1 A1125 18 HET FT1 B1125 18 HETNAM FT1 4-(2,4-DICHLOROPHENOXY)-3-HYDROXYBENZALDEHYDE FORMUL 3 FT1 2(C13 H8 CL2 O3) FORMUL 5 HOH *126(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 ALA B 81 1 8 SHEET 1 AA 2 SER A 23 PRO A 24 0 SHEET 2 AA 2 LEU A 12 ASP A 18 -1 O ASP A 18 N SER A 23 SHEET 1 AB 2 GLU A 54 LEU A 55 0 SHEET 2 AB 2 LEU A 12 ASP A 18 -1 O VAL A 14 N LEU A 55 SHEET 1 BA 2 SER B 23 PRO B 24 0 SHEET 2 BA 2 LEU B 12 ASP B 18 -1 O ASP B 18 N SER B 23 SHEET 1 BB 2 GLU B 54 LEU B 55 0 SHEET 2 BB 2 LEU B 12 ASP B 18 -1 O VAL B 14 N LEU B 55 SHEET 1 AC 8 TRP A 41 LYS A 48 0 SHEET 2 AC 8 ALA A 29 LYS A 35 -1 O VAL A 30 N GLY A 47 SHEET 3 AC 8 GLY A 67 ILE A 73 -1 O ILE A 68 N LYS A 35 SHEET 4 AC 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AC 8 HIS B 88 ALA B 97 -1 N GLU B 89 O VAL A 94 SHEET 6 AC 8 GLY B 67 ILE B 73 -1 O GLY B 67 N ALA B 97 SHEET 7 AC 8 ALA B 29 LYS B 35 -1 O HIS B 31 N GLU B 72 SHEET 8 AC 8 TRP B 41 LYS B 48 -1 O GLU B 42 N ARG B 34 SITE 1 AC1 7 LYS A 15 LEU A 17 ALA A 108 LEU A 110 SITE 2 AC1 7 SER A 117 THR A 118 THR A 119 SITE 1 AC2 6 LYS B 15 LEU B 17 ALA B 108 SER B 117 SITE 2 AC2 6 THR B 119 VAL B 121 CRYST1 85.600 42.470 63.870 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015657 0.00000