data_4AGZ # _entry.id 4AGZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4AGZ pdb_00004agz 10.2210/pdb4agz/pdb PDBE EBI-48604 ? ? WWPDB D_1290048604 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4AH1 unspecified 'CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION' PDB 4AH0 unspecified 'CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AGZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-02-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Munnur, D.G.' 1 'Mitchell, E.P.' 2 'Forsyth, V.T.' 3 'Teixeira, S.C.M.' 4 'Neidle, S.' 5 # _citation.id primary _citation.title 'A Detailed Study of Water Network in the Minor Groove of D(Cgcgaattcgcg)2 and D(Cgcaaatttgcg)2 in Presence of Linear Groove Binders' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Munnur, D.G.' 1 ? primary 'Mitchell, E.P.' 2 ? primary 'Forsyth, V.T.' 3 ? primary 'Teixeira, S.C.M.' 4 ? primary 'Neidle, S.' 5 ? # _cell.entry_id 4AGZ _cell.length_a 24.026 _cell.length_b 39.905 _cell.length_c 65.784 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AGZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" 370.407 1 ? ? ? ? 4 water nat water 18.015 192 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4AGZ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4AGZ _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AGZ A 1 ? 12 ? 4AGZ 1 ? 12 ? 1 12 2 1 4AGZ B 1 ? 12 ? 4AGZ 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight D98 non-polymer . "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" ? 'C21 H18 N6 O' 370.407 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 4AGZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_percent_sol 61.58 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MAGNESIUM CHLORIDE, DNA, DB 985, MPD, SODIUM CACODYLATE BUFFER. PH 6.6, VAPOUR DIFFUSION, SITTING DROP, 285K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-07-19 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9765 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9765 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AGZ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.90 _reflns.d_resolution_high 1.25 _reflns.number_obs 18006 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.30 _reflns.B_iso_Wilson_estimate 0 _reflns.pdbx_redundancy 6.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.55 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.10 _reflns_shell.pdbx_redundancy 6.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AGZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17027 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.76 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 98.84 _refine.ls_R_factor_obs 0.15755 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15483 _refine.ls_R_factor_R_free 0.20704 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 925 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 12.920 _refine.aniso_B[1][1] -0.12 _refine.aniso_B[2][2] -0.12 _refine.aniso_B[3][3] 0.25 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model 'PDB ENTRY 1FQ2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.049 _refine.pdbx_overall_ESU_R_Free 0.055 _refine.overall_SU_ML 0.033 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.359 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 709 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 14.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.021 ? 576 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 239 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.574 3.000 ? 882 'X-RAY DIFFRACTION' ? r_angle_other_deg 4.559 3.029 ? 582 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 94 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.034 0.020 ? 288 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.037 0.021 ? 57 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.329 3.000 ? 576 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.309 4.500 ? 882 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.644 3.000 ? 545 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 7.302 3.000 ? 487 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.250 _refine_ls_shell.d_res_low 1.282 _refine_ls_shell.number_reflns_R_work 1230 _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AGZ _struct.title 'CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AGZ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DNA DOUBLE HELIX, DNA-DRUG COMPLEX, DNA HYDRATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1013 A HOH 2004 3_645 ? ? ? ? ? ? ? 2.069 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1013 A HOH 2025 3_645 ? ? ? ? ? ? ? 2.105 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1013 A HOH 2060 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1013 A HOH 2061 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1013 A HOH 2073 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1013 B HOH 2079 3_645 ? ? ? ? ? ? ? 2.035 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1014 A HOH 2041 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 1014 A HOH 2044 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 B DG 10 OP1 ? ? A MG 1014 B DG 22 1_655 ? ? ? ? ? ? ? 2.003 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1014 B HOH 2073 1_655 ? ? ? ? ? ? ? 2.095 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1014 B HOH 2074 1_655 ? ? ? ? ? ? ? 2.101 ? ? metalc12 metalc ? ? G HOH . O ? ? ? 4_465 F MG . MG ? ? A HOH 2100 B MG 1026 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc13 metalc ? ? G HOH . O ? ? ? 4_465 F MG . MG ? ? A HOH 2101 B MG 1026 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 1026 B HOH 2053 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 1026 B HOH 2059 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 1026 B HOH 2097 1_555 ? ? ? ? ? ? ? 1.877 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 1026 B HOH 2098 1_555 ? ? ? ? ? ? ? 2.220 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1013 ? 6 'BINDING SITE FOR RESIDUE MG A 1013' AC2 Software A MG 1014 ? 6 'BINDING SITE FOR RESIDUE MG A 1014' AC3 Software B D98 1025 ? 17 'BINDING SITE FOR RESIDUE D98 B 1025' AC4 Software B MG 1026 ? 6 'BINDING SITE FOR RESIDUE MG B 1026' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 2004 . ? 3_645 ? 2 AC1 6 HOH G . ? HOH A 2025 . ? 3_645 ? 3 AC1 6 HOH G . ? HOH A 2060 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 2061 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 2073 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 2079 . ? 3_645 ? 7 AC2 6 HOH G . ? HOH A 2041 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 2044 . ? 1_555 ? 9 AC2 6 DG B 10 ? DG B 22 . ? 1_655 ? 10 AC2 6 HOH H . ? HOH B 2069 . ? 1_655 ? 11 AC2 6 HOH H . ? HOH B 2073 . ? 1_655 ? 12 AC2 6 HOH H . ? HOH B 2074 . ? 1_655 ? 13 AC3 17 DA A 6 ? DA A 6 . ? 1_555 ? 14 AC3 17 DT A 7 ? DT A 7 . ? 1_555 ? 15 AC3 17 DT A 8 ? DT A 8 . ? 1_555 ? 16 AC3 17 DC A 9 ? DC A 9 . ? 1_555 ? 17 AC3 17 HOH G . ? HOH A 2059 . ? 1_555 ? 18 AC3 17 HOH G . ? HOH A 2084 . ? 1_555 ? 19 AC3 17 DA B 6 ? DA B 18 . ? 1_555 ? 20 AC3 17 DT B 7 ? DT B 19 . ? 1_555 ? 21 AC3 17 DT B 8 ? DT B 20 . ? 1_555 ? 22 AC3 17 DC B 9 ? DC B 21 . ? 1_555 ? 23 AC3 17 HOH H . ? HOH B 2069 . ? 1_555 ? 24 AC3 17 HOH H . ? HOH B 2071 . ? 1_555 ? 25 AC3 17 HOH H . ? HOH B 2092 . ? 1_555 ? 26 AC3 17 HOH H . ? HOH B 2093 . ? 1_555 ? 27 AC3 17 HOH H . ? HOH B 2094 . ? 1_555 ? 28 AC3 17 HOH H . ? HOH B 2095 . ? 1_555 ? 29 AC3 17 HOH H . ? HOH B 2096 . ? 1_555 ? 30 AC4 6 HOH G . ? HOH A 2100 . ? 4_465 ? 31 AC4 6 HOH G . ? HOH A 2101 . ? 4_465 ? 32 AC4 6 HOH H . ? HOH B 2053 . ? 1_555 ? 33 AC4 6 HOH H . ? HOH B 2059 . ? 1_555 ? 34 AC4 6 HOH H . ? HOH B 2097 . ? 1_555 ? 35 AC4 6 HOH H . ? HOH B 2098 . ? 1_555 ? # _database_PDB_matrix.entry_id 4AGZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AGZ _atom_sites.fract_transf_matrix[1][1] 0.041622 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025060 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015201 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 1013 1013 MG MG A . D 2 MG 1 1014 1014 MG MG A . E 3 D98 1 1025 1025 D98 D98 B . F 2 MG 1 1026 1026 MG MG B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2033 2033 HOH HOH A . G 4 HOH 33 2034 2034 HOH HOH A . G 4 HOH 34 2036 2036 HOH HOH A . G 4 HOH 35 2037 2037 HOH HOH A . G 4 HOH 36 2038 2038 HOH HOH A . G 4 HOH 37 2039 2039 HOH HOH A . G 4 HOH 38 2040 2040 HOH HOH A . G 4 HOH 39 2041 2041 HOH HOH A . G 4 HOH 40 2042 2042 HOH HOH A . G 4 HOH 41 2043 2043 HOH HOH A . G 4 HOH 42 2044 2044 HOH HOH A . G 4 HOH 43 2045 2045 HOH HOH A . G 4 HOH 44 2046 2046 HOH HOH A . G 4 HOH 45 2047 2047 HOH HOH A . G 4 HOH 46 2048 2048 HOH HOH A . G 4 HOH 47 2049 2049 HOH HOH A . G 4 HOH 48 2050 2050 HOH HOH A . G 4 HOH 49 2051 2051 HOH HOH A . G 4 HOH 50 2052 2052 HOH HOH A . G 4 HOH 51 2053 2053 HOH HOH A . G 4 HOH 52 2054 2054 HOH HOH A . G 4 HOH 53 2055 2055 HOH HOH A . G 4 HOH 54 2056 2056 HOH HOH A . G 4 HOH 55 2057 2057 HOH HOH A . G 4 HOH 56 2058 2058 HOH HOH A . G 4 HOH 57 2059 2059 HOH HOH A . G 4 HOH 58 2060 2060 HOH HOH A . G 4 HOH 59 2061 2061 HOH HOH A . G 4 HOH 60 2062 2062 HOH HOH A . G 4 HOH 61 2063 2063 HOH HOH A . G 4 HOH 62 2064 2064 HOH HOH A . G 4 HOH 63 2065 2065 HOH HOH A . G 4 HOH 64 2066 2066 HOH HOH A . G 4 HOH 65 2067 2067 HOH HOH A . G 4 HOH 66 2068 2068 HOH HOH A . G 4 HOH 67 2069 2069 HOH HOH A . G 4 HOH 68 2071 2071 HOH HOH A . G 4 HOH 69 2072 2072 HOH HOH A . G 4 HOH 70 2073 2073 HOH HOH A . G 4 HOH 71 2074 2074 HOH HOH A . G 4 HOH 72 2075 2075 HOH HOH A . G 4 HOH 73 2076 2076 HOH HOH A . G 4 HOH 74 2077 2077 HOH HOH A . G 4 HOH 75 2078 2078 HOH HOH A . G 4 HOH 76 2079 2079 HOH HOH A . G 4 HOH 77 2080 2080 HOH HOH A . G 4 HOH 78 2081 2081 HOH HOH A . G 4 HOH 79 2082 2082 HOH HOH A . G 4 HOH 80 2083 2083 HOH HOH A . G 4 HOH 81 2084 2084 HOH HOH A . G 4 HOH 82 2085 2085 HOH HOH A . G 4 HOH 83 2086 2086 HOH HOH A . G 4 HOH 84 2087 2087 HOH HOH A . G 4 HOH 85 2088 2088 HOH HOH A . G 4 HOH 86 2089 2089 HOH HOH A . G 4 HOH 87 2090 2090 HOH HOH A . G 4 HOH 88 2091 2091 HOH HOH A . G 4 HOH 89 2092 2092 HOH HOH A . G 4 HOH 90 2093 2093 HOH HOH A . G 4 HOH 91 2094 2094 HOH HOH A . G 4 HOH 92 2095 2095 HOH HOH A . G 4 HOH 93 2096 2096 HOH HOH A . G 4 HOH 94 2097 2097 HOH HOH A . G 4 HOH 95 2100 2100 HOH HOH A . G 4 HOH 96 2101 2101 HOH HOH A . G 4 HOH 97 2102 2102 HOH HOH A . G 4 HOH 98 2103 2103 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . H 4 HOH 4 2004 2004 HOH HOH B . H 4 HOH 5 2005 2005 HOH HOH B . H 4 HOH 6 2006 2006 HOH HOH B . H 4 HOH 7 2007 2007 HOH HOH B . H 4 HOH 8 2008 2008 HOH HOH B . H 4 HOH 9 2009 2009 HOH HOH B . H 4 HOH 10 2010 2010 HOH HOH B . H 4 HOH 11 2011 2011 HOH HOH B . H 4 HOH 12 2012 2012 HOH HOH B . H 4 HOH 13 2013 2013 HOH HOH B . H 4 HOH 14 2014 2014 HOH HOH B . H 4 HOH 15 2016 2016 HOH HOH B . H 4 HOH 16 2017 2017 HOH HOH B . H 4 HOH 17 2018 2018 HOH HOH B . H 4 HOH 18 2019 2019 HOH HOH B . H 4 HOH 19 2020 2020 HOH HOH B . H 4 HOH 20 2021 2021 HOH HOH B . H 4 HOH 21 2022 2022 HOH HOH B . H 4 HOH 22 2023 2023 HOH HOH B . H 4 HOH 23 2024 2024 HOH HOH B . H 4 HOH 24 2025 2025 HOH HOH B . H 4 HOH 25 2026 2026 HOH HOH B . H 4 HOH 26 2027 2027 HOH HOH B . H 4 HOH 27 2028 2028 HOH HOH B . H 4 HOH 28 2029 2029 HOH HOH B . H 4 HOH 29 2030 2030 HOH HOH B . H 4 HOH 30 2031 2031 HOH HOH B . H 4 HOH 31 2032 2032 HOH HOH B . H 4 HOH 32 2033 2033 HOH HOH B . H 4 HOH 33 2034 2034 HOH HOH B . H 4 HOH 34 2036 2036 HOH HOH B . H 4 HOH 35 2037 2037 HOH HOH B . H 4 HOH 36 2038 2038 HOH HOH B . H 4 HOH 37 2039 2039 HOH HOH B . H 4 HOH 38 2040 2040 HOH HOH B . H 4 HOH 39 2041 2041 HOH HOH B . H 4 HOH 40 2042 2042 HOH HOH B . H 4 HOH 41 2043 2043 HOH HOH B . H 4 HOH 42 2044 2044 HOH HOH B . H 4 HOH 43 2045 2045 HOH HOH B . H 4 HOH 44 2046 2046 HOH HOH B . H 4 HOH 45 2047 2047 HOH HOH B . H 4 HOH 46 2048 2048 HOH HOH B . H 4 HOH 47 2049 2049 HOH HOH B . H 4 HOH 48 2050 2050 HOH HOH B . H 4 HOH 49 2051 2051 HOH HOH B . H 4 HOH 50 2052 2052 HOH HOH B . H 4 HOH 51 2053 2053 HOH HOH B . H 4 HOH 52 2054 2054 HOH HOH B . H 4 HOH 53 2055 2055 HOH HOH B . H 4 HOH 54 2056 2056 HOH HOH B . H 4 HOH 55 2057 2057 HOH HOH B . H 4 HOH 56 2058 2058 HOH HOH B . H 4 HOH 57 2059 2059 HOH HOH B . H 4 HOH 58 2060 2060 HOH HOH B . H 4 HOH 59 2061 2061 HOH HOH B . H 4 HOH 60 2062 2062 HOH HOH B . H 4 HOH 61 2064 2064 HOH HOH B . H 4 HOH 62 2065 2065 HOH HOH B . H 4 HOH 63 2066 2066 HOH HOH B . H 4 HOH 64 2067 2067 HOH HOH B . H 4 HOH 65 2068 2068 HOH HOH B . H 4 HOH 66 2069 2069 HOH HOH B . H 4 HOH 67 2071 2071 HOH HOH B . H 4 HOH 68 2072 2072 HOH HOH B . H 4 HOH 69 2073 2073 HOH HOH B . H 4 HOH 70 2074 2074 HOH HOH B . H 4 HOH 71 2075 2075 HOH HOH B . H 4 HOH 72 2076 2076 HOH HOH B . H 4 HOH 73 2077 2077 HOH HOH B . H 4 HOH 74 2078 2078 HOH HOH B . H 4 HOH 75 2079 2079 HOH HOH B . H 4 HOH 76 2080 2080 HOH HOH B . H 4 HOH 77 2081 2081 HOH HOH B . H 4 HOH 78 2082 2082 HOH HOH B . H 4 HOH 79 2083 2083 HOH HOH B . H 4 HOH 80 2084 2084 HOH HOH B . H 4 HOH 81 2085 2085 HOH HOH B . H 4 HOH 82 2086 2086 HOH HOH B . H 4 HOH 83 2087 2087 HOH HOH B . H 4 HOH 84 2088 2088 HOH HOH B . H 4 HOH 85 2089 2089 HOH HOH B . H 4 HOH 86 2090 2090 HOH HOH B . H 4 HOH 87 2091 2091 HOH HOH B . H 4 HOH 88 2092 2092 HOH HOH B . H 4 HOH 89 2093 2093 HOH HOH B . H 4 HOH 90 2094 2094 HOH HOH B . H 4 HOH 91 2095 2095 HOH HOH B . H 4 HOH 92 2096 2096 HOH HOH B . H 4 HOH 93 2097 2097 HOH HOH B . H 4 HOH 94 2098 2098 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1600 ? 1 MORE -14.4 ? 1 'SSA (A^2)' 4550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 2004 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2025 ? 3_645 91.0 ? 2 O ? G HOH . ? A HOH 2004 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2060 ? 1_555 87.3 ? 3 O ? G HOH . ? A HOH 2025 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2060 ? 1_555 175.4 ? 4 O ? G HOH . ? A HOH 2004 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2061 ? 1_555 174.5 ? 5 O ? G HOH . ? A HOH 2025 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2061 ? 1_555 90.2 ? 6 O ? G HOH . ? A HOH 2060 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2061 ? 1_555 91.9 ? 7 O ? G HOH . ? A HOH 2004 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2073 ? 1_555 94.3 ? 8 O ? G HOH . ? A HOH 2025 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2073 ? 1_555 88.5 ? 9 O ? G HOH . ? A HOH 2060 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2073 ? 1_555 87.3 ? 10 O ? G HOH . ? A HOH 2061 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? G HOH . ? A HOH 2073 ? 1_555 91.1 ? 11 O ? G HOH . ? A HOH 2004 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? H HOH . ? B HOH 2079 ? 3_645 86.6 ? 12 O ? G HOH . ? A HOH 2025 ? 3_645 MG ? C MG . ? A MG 1013 ? 1_555 O ? H HOH . ? B HOH 2079 ? 3_645 94.7 ? 13 O ? G HOH . ? A HOH 2060 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? H HOH . ? B HOH 2079 ? 3_645 89.5 ? 14 O ? G HOH . ? A HOH 2061 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? H HOH . ? B HOH 2079 ? 3_645 88.0 ? 15 O ? G HOH . ? A HOH 2073 ? 1_555 MG ? C MG . ? A MG 1013 ? 1_555 O ? H HOH . ? B HOH 2079 ? 3_645 176.6 ? 16 O ? G HOH . ? A HOH 2041 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? G HOH . ? A HOH 2044 ? 1_555 91.6 ? 17 O ? G HOH . ? A HOH 2041 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 OP1 ? B DG 10 ? B DG 22 ? 1_655 83.0 ? 18 O ? G HOH . ? A HOH 2044 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 OP1 ? B DG 10 ? B DG 22 ? 1_655 174.3 ? 19 O ? G HOH . ? A HOH 2041 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2073 ? 1_655 168.7 ? 20 O ? G HOH . ? A HOH 2044 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2073 ? 1_655 89.4 ? 21 OP1 ? B DG 10 ? B DG 22 ? 1_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2073 ? 1_655 96.2 ? 22 O ? G HOH . ? A HOH 2041 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2074 ? 1_655 82.9 ? 23 O ? G HOH . ? A HOH 2044 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2074 ? 1_655 89.2 ? 24 OP1 ? B DG 10 ? B DG 22 ? 1_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2074 ? 1_655 91.8 ? 25 O ? H HOH . ? B HOH 2073 ? 1_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? H HOH . ? B HOH 2074 ? 1_655 85.8 ? 26 O ? G HOH . ? A HOH 2100 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? G HOH . ? A HOH 2101 ? 4_465 99.3 ? 27 O ? G HOH . ? A HOH 2100 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2053 ? 1_555 90.7 ? 28 O ? G HOH . ? A HOH 2101 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2053 ? 1_555 83.0 ? 29 O ? G HOH . ? A HOH 2100 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2059 ? 1_555 174.6 ? 30 O ? G HOH . ? A HOH 2101 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2059 ? 1_555 85.7 ? 31 O ? H HOH . ? B HOH 2053 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2059 ? 1_555 87.9 ? 32 O ? G HOH . ? A HOH 2100 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2097 ? 1_555 89.3 ? 33 O ? G HOH . ? A HOH 2101 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2097 ? 1_555 87.1 ? 34 O ? H HOH . ? B HOH 2053 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2097 ? 1_555 170.0 ? 35 O ? H HOH . ? B HOH 2059 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2097 ? 1_555 93.0 ? 36 O ? G HOH . ? A HOH 2100 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2098 ? 1_555 80.6 ? 37 O ? G HOH . ? A HOH 2101 ? 4_465 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2098 ? 1_555 178.9 ? 38 O ? H HOH . ? B HOH 2053 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2098 ? 1_555 98.1 ? 39 O ? H HOH . ? B HOH 2059 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2098 ? 1_555 94.4 ? 40 O ? H HOH . ? B HOH 2097 ? 1_555 MG ? F MG . ? B MG 1026 ? 1_555 O ? H HOH . ? B HOH 2098 ? 1_555 91.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2019-01-30 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Experimental preparation' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Experimental preparation' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' exptl_crystal_grow 2 3 'Structure model' exptl_crystal_grow 3 3 'Structure model' pdbx_seq_map_depositor_info 4 3 'Structure model' struct_biol 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_database_status 9 4 'Structure model' pdbx_initial_refinement_model 10 4 'Structure model' pdbx_struct_conn_angle 11 4 'Structure model' struct_conn 12 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 3 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_symmetry' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_symmetry' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0110 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N24 B D98 1025 ? ? O B HOH 2096 ? ? 2.01 2 1 O B HOH 2009 ? ? O B HOH 2010 ? ? 2.09 3 1 O A HOH 2036 ? ? O A HOH 2088 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.360 1.419 -0.059 0.006 N 3 1 "O3'" B DG 14 ? ? P B DC 15 ? ? 1.535 1.607 -0.072 0.012 Y 4 1 C6 B DT 20 ? ? N1 B DT 20 ? ? 1.421 1.378 0.043 0.007 N 5 1 "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 1.459 1.516 -0.057 0.008 N 6 1 "O3'" B DC 23 ? ? "C3'" B DC 23 ? ? 1.377 1.419 -0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.38 121.90 -2.52 0.40 N 2 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 121.23 117.40 3.83 0.50 N 3 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 108.25 110.80 -2.55 0.40 N 4 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 107.97 104.30 3.67 0.50 N 5 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 109.37 113.10 -3.73 0.50 N 6 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.81 119.90 -4.09 0.60 N 7 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 117.84 121.90 -4.06 0.40 N 8 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 116.18 113.10 3.08 0.50 N 9 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.70 106.40 -2.70 0.40 N 10 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 110.79 113.80 -3.01 0.50 N 11 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 100.60 105.90 -5.30 0.80 N 12 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 100.44 108.00 -7.56 0.70 N 13 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 99.20 105.70 -6.50 0.90 N 14 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 113.23 106.00 7.23 0.60 N 15 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 102.29 110.10 -7.81 1.00 N 16 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 101.68 108.00 -6.32 0.70 N 17 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 108.13 110.80 -2.67 0.40 N 18 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 103.72 108.00 -4.28 0.70 N 19 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 114.03 117.70 -3.67 0.50 N 20 1 C5 B DA 18 ? ? N7 B DA 18 ? ? C8 B DA 18 ? ? 100.85 103.90 -3.05 0.50 N 21 1 N7 B DA 18 ? ? C8 B DA 18 ? ? N9 B DA 18 ? ? 116.81 113.80 3.01 0.50 N 22 1 N1 B DG 22 ? ? C2 B DG 22 ? ? N3 B DG 22 ? ? 119.46 123.90 -4.44 0.60 N 23 1 C2 B DG 22 ? ? N3 B DG 22 ? ? C4 B DG 22 ? ? 114.94 111.90 3.04 0.50 N 24 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 114.75 111.50 3.25 0.50 N 25 1 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.46 103.10 6.36 0.90 N 26 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 122.94 119.90 3.04 0.50 N 27 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 99.68 104.50 -4.82 0.40 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 21 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.067 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O A A HOH 2011 ? 6.40 . 2 1 O ? B HOH 2010 ? 5.99 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal D98 C1 C Y N 1 D98 C2 C Y N 2 D98 C3 C Y N 3 D98 C4 C Y N 4 D98 C5 C Y N 5 D98 C6 C Y N 6 D98 C7 C Y N 7 D98 C8 C Y N 8 D98 C9 C Y N 9 D98 C10 C Y N 10 D98 C11 C Y N 11 D98 C12 C Y N 12 D98 C13 C Y N 13 D98 N14 N Y N 14 D98 C15 C Y N 15 D98 C16 C Y N 16 D98 N17 N Y N 17 D98 C18 C Y N 18 D98 C19 C Y N 19 D98 C20 C Y N 20 D98 C21 C Y N 21 D98 C22 C N N 22 D98 N24 N N N 23 D98 N23 N N N 24 D98 C25 C N N 25 D98 N26 N N N 26 D98 N27 N N N 27 D98 OAE O N N 28 D98 H1 H N N 29 D98 HAE H N N 30 D98 H4 H N N 31 D98 H5 H N N 32 D98 H8 H N N 33 D98 H12 H N N 34 D98 H9 H N N 35 D98 H11 H N N 36 D98 H14 H N N 37 D98 H19 H N N 38 D98 H18 H N N 39 D98 H20 H N N 40 D98 H23 H N N 41 D98 H241 H N N 42 D98 H242 H N N 43 D98 H26 H N N 44 D98 H271 H N N 45 D98 H272 H N N 46 DA OP3 O N N 47 DA P P N N 48 DA OP1 O N N 49 DA OP2 O N N 50 DA "O5'" O N N 51 DA "C5'" C N N 52 DA "C4'" C N R 53 DA "O4'" O N N 54 DA "C3'" C N S 55 DA "O3'" O N N 56 DA "C2'" C N N 57 DA "C1'" C N R 58 DA N9 N Y N 59 DA C8 C Y N 60 DA N7 N Y N 61 DA C5 C Y N 62 DA C6 C Y N 63 DA N6 N N N 64 DA N1 N Y N 65 DA C2 C Y N 66 DA N3 N Y N 67 DA C4 C Y N 68 DA HOP3 H N N 69 DA HOP2 H N N 70 DA "H5'" H N N 71 DA "H5''" H N N 72 DA "H4'" H N N 73 DA "H3'" H N N 74 DA "HO3'" H N N 75 DA "H2'" H N N 76 DA "H2''" H N N 77 DA "H1'" H N N 78 DA H8 H N N 79 DA H61 H N N 80 DA H62 H N N 81 DA H2 H N N 82 DC OP3 O N N 83 DC P P N N 84 DC OP1 O N N 85 DC OP2 O N N 86 DC "O5'" O N N 87 DC "C5'" C N N 88 DC "C4'" C N R 89 DC "O4'" O N N 90 DC "C3'" C N S 91 DC "O3'" O N N 92 DC "C2'" C N N 93 DC "C1'" C N R 94 DC N1 N N N 95 DC C2 C N N 96 DC O2 O N N 97 DC N3 N N N 98 DC C4 C N N 99 DC N4 N N N 100 DC C5 C N N 101 DC C6 C N N 102 DC HOP3 H N N 103 DC HOP2 H N N 104 DC "H5'" H N N 105 DC "H5''" H N N 106 DC "H4'" H N N 107 DC "H3'" H N N 108 DC "HO3'" H N N 109 DC "H2'" H N N 110 DC "H2''" H N N 111 DC "H1'" H N N 112 DC H41 H N N 113 DC H42 H N N 114 DC H5 H N N 115 DC H6 H N N 116 DG OP3 O N N 117 DG P P N N 118 DG OP1 O N N 119 DG OP2 O N N 120 DG "O5'" O N N 121 DG "C5'" C N N 122 DG "C4'" C N R 123 DG "O4'" O N N 124 DG "C3'" C N S 125 DG "O3'" O N N 126 DG "C2'" C N N 127 DG "C1'" C N R 128 DG N9 N Y N 129 DG C8 C Y N 130 DG N7 N Y N 131 DG C5 C Y N 132 DG C6 C N N 133 DG O6 O N N 134 DG N1 N N N 135 DG C2 C N N 136 DG N2 N N N 137 DG N3 N N N 138 DG C4 C Y N 139 DG HOP3 H N N 140 DG HOP2 H N N 141 DG "H5'" H N N 142 DG "H5''" H N N 143 DG "H4'" H N N 144 DG "H3'" H N N 145 DG "HO3'" H N N 146 DG "H2'" H N N 147 DG "H2''" H N N 148 DG "H1'" H N N 149 DG H8 H N N 150 DG H1 H N N 151 DG H21 H N N 152 DG H22 H N N 153 DT OP3 O N N 154 DT P P N N 155 DT OP1 O N N 156 DT OP2 O N N 157 DT "O5'" O N N 158 DT "C5'" C N N 159 DT "C4'" C N R 160 DT "O4'" O N N 161 DT "C3'" C N S 162 DT "O3'" O N N 163 DT "C2'" C N N 164 DT "C1'" C N R 165 DT N1 N N N 166 DT C2 C N N 167 DT O2 O N N 168 DT N3 N N N 169 DT C4 C N N 170 DT O4 O N N 171 DT C5 C N N 172 DT C7 C N N 173 DT C6 C N N 174 DT HOP3 H N N 175 DT HOP2 H N N 176 DT "H5'" H N N 177 DT "H5''" H N N 178 DT "H4'" H N N 179 DT "H3'" H N N 180 DT "HO3'" H N N 181 DT "H2'" H N N 182 DT "H2''" H N N 183 DT "H1'" H N N 184 DT H3 H N N 185 DT H71 H N N 186 DT H72 H N N 187 DT H73 H N N 188 DT H6 H N N 189 HOH O O N N 190 HOH H1 H N N 191 HOH H2 H N N 192 MG MG MG N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D98 C1 C2 sing Y N 1 D98 C1 C6 doub Y N 2 D98 C2 C3 doub Y N 3 D98 C2 OAE sing N N 4 D98 C3 C4 sing Y N 5 D98 C3 C7 sing N N 6 D98 C4 C5 doub Y N 7 D98 C5 C6 sing Y N 8 D98 C6 C25 sing N N 9 D98 C7 C8 sing Y N 10 D98 C7 C12 doub Y N 11 D98 C8 C9 doub Y N 12 D98 C9 C10 sing Y N 13 D98 C10 C11 doub Y N 14 D98 C10 C13 sing N N 15 D98 C11 C12 sing Y N 16 D98 C13 N14 sing Y N 17 D98 C13 N17 doub Y N 18 D98 N14 C15 sing Y N 19 D98 C15 C16 sing Y N 20 D98 C15 C19 doub Y N 21 D98 C16 N17 sing Y N 22 D98 C16 C18 doub Y N 23 D98 C18 C21 sing Y N 24 D98 C19 C20 sing Y N 25 D98 C20 C21 doub Y N 26 D98 C21 C22 sing N N 27 D98 C22 N23 doub N N 28 D98 C22 N24 sing N N 29 D98 C25 N26 doub N N 30 D98 C25 N27 sing N N 31 D98 C1 H1 sing N N 32 D98 OAE HAE sing N N 33 D98 C4 H4 sing N N 34 D98 C5 H5 sing N N 35 D98 C8 H8 sing N N 36 D98 C12 H12 sing N N 37 D98 C9 H9 sing N N 38 D98 C11 H11 sing N N 39 D98 N14 H14 sing N N 40 D98 C19 H19 sing N N 41 D98 C18 H18 sing N N 42 D98 C20 H20 sing N N 43 D98 N23 H23 sing N N 44 D98 N24 H241 sing N N 45 D98 N24 H242 sing N N 46 D98 N26 H26 sing N N 47 D98 N27 H271 sing N N 48 D98 N27 H272 sing N N 49 DA OP3 P sing N N 50 DA OP3 HOP3 sing N N 51 DA P OP1 doub N N 52 DA P OP2 sing N N 53 DA P "O5'" sing N N 54 DA OP2 HOP2 sing N N 55 DA "O5'" "C5'" sing N N 56 DA "C5'" "C4'" sing N N 57 DA "C5'" "H5'" sing N N 58 DA "C5'" "H5''" sing N N 59 DA "C4'" "O4'" sing N N 60 DA "C4'" "C3'" sing N N 61 DA "C4'" "H4'" sing N N 62 DA "O4'" "C1'" sing N N 63 DA "C3'" "O3'" sing N N 64 DA "C3'" "C2'" sing N N 65 DA "C3'" "H3'" sing N N 66 DA "O3'" "HO3'" sing N N 67 DA "C2'" "C1'" sing N N 68 DA "C2'" "H2'" sing N N 69 DA "C2'" "H2''" sing N N 70 DA "C1'" N9 sing N N 71 DA "C1'" "H1'" sing N N 72 DA N9 C8 sing Y N 73 DA N9 C4 sing Y N 74 DA C8 N7 doub Y N 75 DA C8 H8 sing N N 76 DA N7 C5 sing Y N 77 DA C5 C6 sing Y N 78 DA C5 C4 doub Y N 79 DA C6 N6 sing N N 80 DA C6 N1 doub Y N 81 DA N6 H61 sing N N 82 DA N6 H62 sing N N 83 DA N1 C2 sing Y N 84 DA C2 N3 doub Y N 85 DA C2 H2 sing N N 86 DA N3 C4 sing Y N 87 DC OP3 P sing N N 88 DC OP3 HOP3 sing N N 89 DC P OP1 doub N N 90 DC P OP2 sing N N 91 DC P "O5'" sing N N 92 DC OP2 HOP2 sing N N 93 DC "O5'" "C5'" sing N N 94 DC "C5'" "C4'" sing N N 95 DC "C5'" "H5'" sing N N 96 DC "C5'" "H5''" sing N N 97 DC "C4'" "O4'" sing N N 98 DC "C4'" "C3'" sing N N 99 DC "C4'" "H4'" sing N N 100 DC "O4'" "C1'" sing N N 101 DC "C3'" "O3'" sing N N 102 DC "C3'" "C2'" sing N N 103 DC "C3'" "H3'" sing N N 104 DC "O3'" "HO3'" sing N N 105 DC "C2'" "C1'" sing N N 106 DC "C2'" "H2'" sing N N 107 DC "C2'" "H2''" sing N N 108 DC "C1'" N1 sing N N 109 DC "C1'" "H1'" sing N N 110 DC N1 C2 sing N N 111 DC N1 C6 sing N N 112 DC C2 O2 doub N N 113 DC C2 N3 sing N N 114 DC N3 C4 doub N N 115 DC C4 N4 sing N N 116 DC C4 C5 sing N N 117 DC N4 H41 sing N N 118 DC N4 H42 sing N N 119 DC C5 C6 doub N N 120 DC C5 H5 sing N N 121 DC C6 H6 sing N N 122 DG OP3 P sing N N 123 DG OP3 HOP3 sing N N 124 DG P OP1 doub N N 125 DG P OP2 sing N N 126 DG P "O5'" sing N N 127 DG OP2 HOP2 sing N N 128 DG "O5'" "C5'" sing N N 129 DG "C5'" "C4'" sing N N 130 DG "C5'" "H5'" sing N N 131 DG "C5'" "H5''" sing N N 132 DG "C4'" "O4'" sing N N 133 DG "C4'" "C3'" sing N N 134 DG "C4'" "H4'" sing N N 135 DG "O4'" "C1'" sing N N 136 DG "C3'" "O3'" sing N N 137 DG "C3'" "C2'" sing N N 138 DG "C3'" "H3'" sing N N 139 DG "O3'" "HO3'" sing N N 140 DG "C2'" "C1'" sing N N 141 DG "C2'" "H2'" sing N N 142 DG "C2'" "H2''" sing N N 143 DG "C1'" N9 sing N N 144 DG "C1'" "H1'" sing N N 145 DG N9 C8 sing Y N 146 DG N9 C4 sing Y N 147 DG C8 N7 doub Y N 148 DG C8 H8 sing N N 149 DG N7 C5 sing Y N 150 DG C5 C6 sing N N 151 DG C5 C4 doub Y N 152 DG C6 O6 doub N N 153 DG C6 N1 sing N N 154 DG N1 C2 sing N N 155 DG N1 H1 sing N N 156 DG C2 N2 sing N N 157 DG C2 N3 doub N N 158 DG N2 H21 sing N N 159 DG N2 H22 sing N N 160 DG N3 C4 sing N N 161 DT OP3 P sing N N 162 DT OP3 HOP3 sing N N 163 DT P OP1 doub N N 164 DT P OP2 sing N N 165 DT P "O5'" sing N N 166 DT OP2 HOP2 sing N N 167 DT "O5'" "C5'" sing N N 168 DT "C5'" "C4'" sing N N 169 DT "C5'" "H5'" sing N N 170 DT "C5'" "H5''" sing N N 171 DT "C4'" "O4'" sing N N 172 DT "C4'" "C3'" sing N N 173 DT "C4'" "H4'" sing N N 174 DT "O4'" "C1'" sing N N 175 DT "C3'" "O3'" sing N N 176 DT "C3'" "C2'" sing N N 177 DT "C3'" "H3'" sing N N 178 DT "O3'" "HO3'" sing N N 179 DT "C2'" "C1'" sing N N 180 DT "C2'" "H2'" sing N N 181 DT "C2'" "H2''" sing N N 182 DT "C1'" N1 sing N N 183 DT "C1'" "H1'" sing N N 184 DT N1 C2 sing N N 185 DT N1 C6 sing N N 186 DT C2 O2 doub N N 187 DT C2 N3 sing N N 188 DT N3 C4 sing N N 189 DT N3 H3 sing N N 190 DT C4 O4 doub N N 191 DT C4 C5 sing N N 192 DT C5 C7 sing N N 193 DT C5 C6 doub N N 194 DT C7 H71 sing N N 195 DT C7 H72 sing N N 196 DT C7 H73 sing N N 197 DT C6 H6 sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4AGZ 'double helix' 4AGZ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.190 -0.143 -0.003 2.563 -18.455 0.426 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.152 -0.147 0.235 3.699 -5.966 -1.907 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.241 -0.147 0.124 -2.213 -8.147 0.253 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.208 -0.140 -0.051 10.252 -10.904 -1.295 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.091 -0.087 -0.145 6.172 -17.261 1.220 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.080 -0.103 -0.046 1.678 -19.035 7.640 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.099 -0.097 -0.001 -1.875 -19.039 6.423 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.109 -0.163 -0.099 -4.003 -14.529 1.723 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.221 -0.193 -0.108 -7.922 -10.680 -0.405 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.176 -0.141 0.128 9.726 -2.335 1.248 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.177 -0.185 0.267 9.924 -26.245 -2.192 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.343 -0.130 -0.205 9.324 19.224 -2.375 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.434 0.192 3.287 -2.856 7.379 33.390 -0.854 0.279 3.279 12.624 4.887 34.289 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.738 0.655 3.471 2.121 -3.845 42.165 1.320 -0.792 3.433 -5.327 -2.938 42.383 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.429 0.801 3.144 3.110 10.312 26.862 -0.686 1.550 3.161 21.150 -6.378 28.904 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.011 0.128 3.371 0.333 4.077 38.607 -0.320 0.025 3.366 6.145 -0.502 38.814 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.470 -0.221 3.304 -0.485 3.754 34.864 -0.934 -0.854 3.257 6.242 0.807 35.063 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.019 -0.583 3.288 -0.258 0.657 31.045 -1.216 -0.014 3.275 1.228 0.482 31.053 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.429 -0.254 3.270 1.401 1.101 35.339 -0.580 0.912 3.242 1.812 -2.306 35.382 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.115 0.322 3.392 1.655 -0.443 41.087 0.508 0.022 3.390 -0.630 -2.357 41.121 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.367 1.247 3.074 -2.855 7.365 26.092 0.830 -1.485 3.240 15.857 6.148 27.241 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.038 1.012 3.422 -2.362 -13.378 44.790 2.410 1.110 3.064 -17.096 3.018 46.703 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.515 0.738 3.576 3.938 -10.452 34.490 2.788 -1.835 3.366 -17.082 -6.435 36.201 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" D98 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FQ2 _pdbx_initial_refinement_model.details 'PDB ENTRY 1FQ2' #