data_4AH0 # _entry.id 4AH0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4AH0 pdb_00004ah0 10.2210/pdb4ah0/pdb PDBE EBI-48672 ? ? WWPDB D_1290048672 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4AH1 unspecified 'CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION' PDB 4AGZ unspecified 'CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AH0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-02-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Munnur, D.G.' 1 'Mitchell, E.P.' 2 'Forsyth, V.T.' 3 'Teixeira, S.C.M.' 4 'Neidle, S.' 5 # _citation.id primary _citation.title 'A Detailed Study of Water Network in the Minor Groove of D(Cgcgaattcgcg)2 and D(Cgcaaatttgcg)2 in Presence of Linear Groove Binders' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Munnur, D.G.' 1 ? primary 'Mitchell, E.P.' 2 ? primary 'Forsyth, V.T.' 3 ? primary 'Teixeira, S.C.M.' 4 ? primary 'Neidle, S.' 5 ? # _cell.entry_id 4AH0 _cell.length_a 24.285 _cell.length_b 40.287 _cell.length_c 64.678 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AH0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*GP)-3'" 3662.404 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" 370.407 1 ? ? ? ? 4 water nat water 18.015 180 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCAAATTTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4AH0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4AH0 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AH0 A 1 ? 12 ? 4AH0 1 ? 12 ? 1 12 2 1 4AH0 B 1 ? 12 ? 4AH0 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight D98 non-polymer . "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" ? 'C21 H18 N6 O' 370.407 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 4AH0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 61.72 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MAGNESIUM CHLORIDE, DNA, DB985, MPD, SPERMINE TETRAHYDROCHLORIDE, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 285 K, PH 6.50' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-10-22 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.873 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.873 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AH0 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.29 _reflns.d_resolution_high 1.20 _reflns.number_obs 20606 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.26 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.42 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.70 _reflns_shell.pdbx_redundancy 6.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AH0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19484 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.40 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.15536 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15286 _refine.ls_R_factor_R_free 0.20308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1053 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 14.068 _refine.aniso_B[1][1] 0.28 _refine.aniso_B[2][2] -0.28 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES - REFINED INDIVIDUALLY' _refine.pdbx_starting_model 'PDB ENTRY 1S2R' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.042 _refine.pdbx_overall_ESU_R_Free 0.047 _refine.overall_SU_ML 0.032 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.282 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 180 _refine_hist.number_atoms_total 697 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 14.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.021 ? 575 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 238 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.724 2.980 ? 881 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.374 3.030 ? 579 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.147 0.200 ? 94 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.038 0.020 ? 288 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.021 ? 57 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.760 3.000 ? 575 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.922 4.500 ? 881 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.062 3.000 ? 544 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 8.529 3.000 ? 486 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.number_reflns_R_work 1413 _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.258 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AH0 _struct.title 'CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AH0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, MINOR GROOVE, DODECAMER, A3T3, DNA-DRUG COMPLEX, DNA HYDRATION, HYDRATED MAGNESIUM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? G HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 2004 A MG 3001 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc2 metalc ? ? G HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 2028 A MG 3001 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc3 metalc ? ? G HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 2045 A MG 3001 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc4 metalc ? ? G HOH . O ? ? ? 3_555 C MG . MG ? ? A HOH 2063 A MG 3001 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc5 metalc ? ? G HOH . O ? ? ? 3_555 C MG . MG ? ? A HOH 2064 A MG 3001 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc6 metalc ? ? G HOH . O ? ? ? 3_555 C MG . MG ? ? A HOH 2073 A MG 3001 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc7 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 2098 B MG 3003 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc8 metalc ? ? B DG 10 OP1 ? ? ? 2_454 E MG . MG ? ? B DG 22 B MG 3003 1_555 ? ? ? ? ? ? ? 1.891 ? ? metalc9 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 2017 B MG 3003 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc10 metalc ? ? H HOH . O ? ? ? 2_454 E MG . MG ? ? B HOH 2055 B MG 3003 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc11 metalc ? ? H HOH . O ? ? ? 2_454 E MG . MG ? ? B HOH 2061 B MG 3003 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc12 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2067 B MG 3002 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc13 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2077 B MG 3002 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc14 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2078 B MG 3002 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc15 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2079 B MG 3002 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc16 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2080 B MG 3002 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc17 metalc ? ? H HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 2081 B MG 3002 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc18 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 2082 B MG 3003 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc19 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 2083 B MG 3003 1_555 ? ? ? ? ? ? ? 2.592 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 3001 ? 6 'BINDING SITE FOR RESIDUE MG A 3001' AC2 Software B D98 1025 ? 13 'BINDING SITE FOR RESIDUE D98 B 1025' AC3 Software B MG 3002 ? 6 'BINDING SITE FOR RESIDUE MG B 3002' AC4 Software B MG 3003 ? 7 'BINDING SITE FOR RESIDUE MG B 3003' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 2004 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 2028 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 2045 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 2063 . ? 3_555 ? 5 AC1 6 HOH G . ? HOH A 2064 . ? 3_555 ? 6 AC1 6 HOH G . ? HOH A 2073 . ? 3_555 ? 7 AC2 13 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 13 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 13 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 13 DT A 9 ? DT A 9 . ? 1_555 ? 11 AC2 13 HOH G . ? HOH A 2062 . ? 1_555 ? 12 AC2 13 DA B 6 ? DA B 18 . ? 1_555 ? 13 AC2 13 DT B 7 ? DT B 19 . ? 1_555 ? 14 AC2 13 DT B 8 ? DT B 20 . ? 1_555 ? 15 AC2 13 DT B 9 ? DT B 21 . ? 1_555 ? 16 AC2 13 DG B 10 ? DG B 22 . ? 1_555 ? 17 AC2 13 HOH H . ? HOH B 2055 . ? 1_555 ? 18 AC2 13 HOH H . ? HOH B 2075 . ? 1_555 ? 19 AC2 13 HOH H . ? HOH B 2076 . ? 1_555 ? 20 AC3 6 HOH H . ? HOH B 2067 . ? 1_555 ? 21 AC3 6 HOH H . ? HOH B 2077 . ? 1_555 ? 22 AC3 6 HOH H . ? HOH B 2078 . ? 1_555 ? 23 AC3 6 HOH H . ? HOH B 2079 . ? 1_555 ? 24 AC3 6 HOH H . ? HOH B 2080 . ? 1_555 ? 25 AC3 6 HOH H . ? HOH B 2081 . ? 1_555 ? 26 AC4 7 HOH G . ? HOH A 2098 . ? 1_555 ? 27 AC4 7 DG B 10 ? DG B 22 . ? 2_454 ? 28 AC4 7 HOH H . ? HOH B 2017 . ? 1_555 ? 29 AC4 7 HOH H . ? HOH B 2055 . ? 2_454 ? 30 AC4 7 HOH H . ? HOH B 2061 . ? 2_454 ? 31 AC4 7 HOH H . ? HOH B 2082 . ? 1_555 ? 32 AC4 7 HOH H . ? HOH B 2083 . ? 1_555 ? # _database_PDB_matrix.entry_id 4AH0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AH0 _atom_sites.fract_transf_matrix[1][1] 0.041178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DA 4 16 16 DA DA B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DT 9 21 21 DT DT B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 3001 3001 MG MG A . D 2 MG 1 3002 3002 MG MG B . E 2 MG 1 3003 3003 MG MG B . F 3 D98 1 1025 1025 D98 D98 B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . G 4 HOH 76 2076 2076 HOH HOH A . G 4 HOH 77 2077 2077 HOH HOH A . G 4 HOH 78 2078 2078 HOH HOH A . G 4 HOH 79 2079 2079 HOH HOH A . G 4 HOH 80 2080 2080 HOH HOH A . G 4 HOH 81 2081 2081 HOH HOH A . G 4 HOH 82 2082 2082 HOH HOH A . G 4 HOH 83 2083 2083 HOH HOH A . G 4 HOH 84 2084 2084 HOH HOH A . G 4 HOH 85 2085 2085 HOH HOH A . G 4 HOH 86 2086 2086 HOH HOH A . G 4 HOH 87 2087 2087 HOH HOH A . G 4 HOH 88 2088 2088 HOH HOH A . G 4 HOH 89 2089 2089 HOH HOH A . G 4 HOH 90 2090 2090 HOH HOH A . G 4 HOH 91 2091 2091 HOH HOH A . G 4 HOH 92 2092 2092 HOH HOH A . G 4 HOH 93 2093 2093 HOH HOH A . G 4 HOH 94 2094 2094 HOH HOH A . G 4 HOH 95 2095 2095 HOH HOH A . G 4 HOH 96 2096 2096 HOH HOH A . G 4 HOH 97 2097 2097 HOH HOH A . G 4 HOH 98 2098 2098 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . H 4 HOH 4 2004 2004 HOH HOH B . H 4 HOH 5 2005 2005 HOH HOH B . H 4 HOH 6 2006 2006 HOH HOH B . H 4 HOH 7 2007 2007 HOH HOH B . H 4 HOH 8 2008 2008 HOH HOH B . H 4 HOH 9 2009 2009 HOH HOH B . H 4 HOH 10 2010 2010 HOH HOH B . H 4 HOH 11 2011 2011 HOH HOH B . H 4 HOH 12 2012 2012 HOH HOH B . H 4 HOH 13 2013 2013 HOH HOH B . H 4 HOH 14 2014 2014 HOH HOH B . H 4 HOH 15 2015 2015 HOH HOH B . H 4 HOH 16 2016 2016 HOH HOH B . H 4 HOH 17 2017 2017 HOH HOH B . H 4 HOH 18 2018 2018 HOH HOH B . H 4 HOH 19 2019 2019 HOH HOH B . H 4 HOH 20 2020 2020 HOH HOH B . H 4 HOH 21 2021 2021 HOH HOH B . H 4 HOH 22 2022 2022 HOH HOH B . H 4 HOH 23 2023 2023 HOH HOH B . H 4 HOH 24 2024 2024 HOH HOH B . H 4 HOH 25 2025 2025 HOH HOH B . H 4 HOH 26 2026 2026 HOH HOH B . H 4 HOH 27 2027 2027 HOH HOH B . H 4 HOH 28 2028 2028 HOH HOH B . H 4 HOH 29 2029 2029 HOH HOH B . H 4 HOH 30 2030 2030 HOH HOH B . H 4 HOH 31 2031 2031 HOH HOH B . H 4 HOH 32 2032 2032 HOH HOH B . H 4 HOH 33 2033 2033 HOH HOH B . H 4 HOH 34 2034 2034 HOH HOH B . H 4 HOH 35 2035 2035 HOH HOH B . H 4 HOH 36 2036 2036 HOH HOH B . H 4 HOH 37 2037 2037 HOH HOH B . H 4 HOH 38 2038 2038 HOH HOH B . H 4 HOH 39 2039 2039 HOH HOH B . H 4 HOH 40 2040 2040 HOH HOH B . H 4 HOH 41 2041 2041 HOH HOH B . H 4 HOH 42 2042 2042 HOH HOH B . H 4 HOH 43 2043 2043 HOH HOH B . H 4 HOH 44 2044 2044 HOH HOH B . H 4 HOH 45 2045 2045 HOH HOH B . H 4 HOH 46 2046 2046 HOH HOH B . H 4 HOH 47 2047 2047 HOH HOH B . H 4 HOH 48 2048 2048 HOH HOH B . H 4 HOH 49 2049 2049 HOH HOH B . H 4 HOH 50 2050 2050 HOH HOH B . H 4 HOH 51 2051 2051 HOH HOH B . H 4 HOH 52 2052 2052 HOH HOH B . H 4 HOH 53 2053 2053 HOH HOH B . H 4 HOH 54 2054 2054 HOH HOH B . H 4 HOH 55 2055 2055 HOH HOH B . H 4 HOH 56 2056 2056 HOH HOH B . H 4 HOH 57 2057 2057 HOH HOH B . H 4 HOH 58 2058 2058 HOH HOH B . H 4 HOH 59 2060 2060 HOH HOH B . H 4 HOH 60 2061 2061 HOH HOH B . H 4 HOH 61 2062 2062 HOH HOH B . H 4 HOH 62 2063 2063 HOH HOH B . H 4 HOH 63 2064 2064 HOH HOH B . H 4 HOH 64 2065 2065 HOH HOH B . H 4 HOH 65 2066 2066 HOH HOH B . H 4 HOH 66 2067 2067 HOH HOH B . H 4 HOH 67 2068 2068 HOH HOH B . H 4 HOH 68 2069 2069 HOH HOH B . H 4 HOH 69 2070 2070 HOH HOH B . H 4 HOH 70 2071 2071 HOH HOH B . H 4 HOH 71 2072 2072 HOH HOH B . H 4 HOH 72 2073 2073 HOH HOH B . H 4 HOH 73 2074 2074 HOH HOH B . H 4 HOH 74 2075 2075 HOH HOH B . H 4 HOH 75 2076 2076 HOH HOH B . H 4 HOH 76 2077 2077 HOH HOH B . H 4 HOH 77 2078 2078 HOH HOH B . H 4 HOH 78 2079 2079 HOH HOH B . H 4 HOH 79 2080 2080 HOH HOH B . H 4 HOH 80 2081 2081 HOH HOH B . H 4 HOH 81 2082 2082 HOH HOH B . H 4 HOH 82 2083 2083 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1560 ? 1 MORE -13.1 ? 1 'SSA (A^2)' 4560 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 2004 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2028 ? 1_555 91.0 ? 2 O ? G HOH . ? A HOH 2004 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2045 ? 1_555 85.0 ? 3 O ? G HOH . ? A HOH 2028 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2045 ? 1_555 94.8 ? 4 O ? G HOH . ? A HOH 2004 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2063 ? 3_555 86.2 ? 5 O ? G HOH . ? A HOH 2028 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2063 ? 3_555 175.7 ? 6 O ? G HOH . ? A HOH 2045 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2063 ? 3_555 88.2 ? 7 O ? G HOH . ? A HOH 2004 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2064 ? 3_555 173.1 ? 8 O ? G HOH . ? A HOH 2028 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2064 ? 3_555 91.1 ? 9 O ? G HOH . ? A HOH 2045 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2064 ? 3_555 88.3 ? 10 O ? G HOH . ? A HOH 2063 ? 3_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2064 ? 3_555 92.0 ? 11 O ? G HOH . ? A HOH 2004 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2073 ? 3_555 94.6 ? 12 O ? G HOH . ? A HOH 2028 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2073 ? 3_555 89.2 ? 13 O ? G HOH . ? A HOH 2045 ? 1_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2073 ? 3_555 176.0 ? 14 O ? G HOH . ? A HOH 2063 ? 3_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2073 ? 3_555 87.8 ? 15 O ? G HOH . ? A HOH 2064 ? 3_555 MG ? C MG . ? A MG 3001 ? 1_555 O ? G HOH . ? A HOH 2073 ? 3_555 92.0 ? 16 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 OP1 ? B DG 10 ? B DG 22 ? 2_454 94.6 ? 17 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2017 ? 1_555 88.4 ? 18 OP1 ? B DG 10 ? B DG 22 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2017 ? 1_555 88.1 ? 19 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2055 ? 2_454 173.9 ? 20 OP1 ? B DG 10 ? B DG 22 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2055 ? 2_454 80.6 ? 21 O ? H HOH . ? B HOH 2017 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2055 ? 2_454 95.3 ? 22 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2061 ? 2_454 85.6 ? 23 OP1 ? B DG 10 ? B DG 22 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2061 ? 2_454 94.9 ? 24 O ? H HOH . ? B HOH 2017 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2061 ? 2_454 173.5 ? 25 O ? H HOH . ? B HOH 2055 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2061 ? 2_454 90.9 ? 26 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2082 ? 1_555 87.5 ? 27 OP1 ? B DG 10 ? B DG 22 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2082 ? 1_555 177.3 ? 28 O ? H HOH . ? B HOH 2017 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2082 ? 1_555 90.4 ? 29 O ? H HOH . ? B HOH 2055 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2082 ? 1_555 97.4 ? 30 O ? H HOH . ? B HOH 2061 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2082 ? 1_555 86.8 ? 31 O ? G HOH . ? A HOH 2098 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 43.9 ? 32 OP1 ? B DG 10 ? B DG 22 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 67.3 ? 33 O ? H HOH . ? B HOH 2017 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 119.7 ? 34 O ? H HOH . ? B HOH 2055 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 130.0 ? 35 O ? H HOH . ? B HOH 2061 ? 2_454 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 56.7 ? 36 O ? H HOH . ? B HOH 2082 ? 1_555 MG ? E MG . ? B MG 3003 ? 1_555 O ? H HOH . ? B HOH 2083 ? 1_555 115.4 ? 37 O ? H HOH . ? B HOH 2067 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2077 ? 1_555 89.5 ? 38 O ? H HOH . ? B HOH 2067 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2078 ? 1_555 83.1 ? 39 O ? H HOH . ? B HOH 2077 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2078 ? 1_555 90.9 ? 40 O ? H HOH . ? B HOH 2067 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2079 ? 1_555 86.2 ? 41 O ? H HOH . ? B HOH 2077 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2079 ? 1_555 174.1 ? 42 O ? H HOH . ? B HOH 2078 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2079 ? 1_555 84.6 ? 43 O ? H HOH . ? B HOH 2067 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2080 ? 1_555 87.0 ? 44 O ? H HOH . ? B HOH 2077 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2080 ? 1_555 94.0 ? 45 O ? H HOH . ? B HOH 2078 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2080 ? 1_555 168.9 ? 46 O ? H HOH . ? B HOH 2079 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2080 ? 1_555 89.8 ? 47 O ? H HOH . ? B HOH 2067 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2081 ? 1_555 169.0 ? 48 O ? H HOH . ? B HOH 2077 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2081 ? 1_555 101.5 ? 49 O ? H HOH . ? B HOH 2078 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2081 ? 1_555 96.8 ? 50 O ? H HOH . ? B HOH 2079 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2081 ? 1_555 82.9 ? 51 O ? H HOH . ? B HOH 2080 ? 1_555 MG ? D MG . ? B MG 3002 ? 1_555 O ? H HOH . ? B HOH 2081 ? 1_555 91.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2019-01-30 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Experimental preparation' 3 2 'Structure model' Other 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' Other 8 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_PDB_rev 2 2 'Structure model' database_PDB_rev_record 3 2 'Structure model' exptl_crystal_grow 4 2 'Structure model' pdbx_database_proc 5 2 'Structure model' pdbx_database_status 6 2 'Structure model' pdbx_seq_map_depositor_info 7 2 'Structure model' struct_biol 8 3 'Structure model' chem_comp_atom 9 3 'Structure model' chem_comp_bond 10 3 'Structure model' database_2 11 3 'Structure model' pdbx_database_status 12 3 'Structure model' pdbx_initial_refinement_model 13 3 'Structure model' pdbx_struct_conn_angle 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_exptl_crystal_grow.method' 2 2 'Structure model' '_exptl_crystal_grow.temp' 3 2 'Structure model' '_pdbx_database_status.recvd_author_approval' 4 2 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_database_status.status_code_sf' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 3 'Structure model' '_pdbx_struct_conn_angle.value' 27 3 'Structure model' '_struct_conn.pdbx_dist_value' 28 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 3 'Structure model' '_struct_conn.ptnr1_symmetry' 36 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 3 'Structure model' '_struct_conn.ptnr2_symmetry' 44 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 45 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 46 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0110 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2036 ? ? O A HOH 2091 ? ? 1.87 2 1 O A HOH 2036 ? ? O A HOH 2037 ? ? 2.13 3 1 N23 B D98 1025 ? ? O B HOH 2075 ? ? 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.607 1.529 0.078 0.010 N 2 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.380 1.419 -0.039 0.006 N 3 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.507 1.420 0.087 0.011 N 4 1 "O3'" B DG 14 ? ? "C3'" B DG 14 ? ? 1.357 1.419 -0.062 0.006 N 5 1 N9 B DA 17 ? ? C4 B DA 17 ? ? 1.415 1.374 0.041 0.006 N 6 1 "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 1.430 1.516 -0.086 0.008 N 7 1 "O3'" B DC 23 ? ? "C3'" B DC 23 ? ? 1.379 1.419 -0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.26 108.00 -4.74 0.70 N 2 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 124.22 121.00 3.22 0.50 N 3 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 119.94 113.80 6.14 0.50 N 4 1 C8 A DA 4 ? ? N9 A DA 4 ? ? C4 A DA 4 ? ? 102.13 105.80 -3.67 0.40 N 5 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 101.82 108.00 -6.18 0.70 N 6 1 C5 A DA 5 ? ? N7 A DA 5 ? ? C8 A DA 5 ? ? 100.25 103.90 -3.65 0.50 N 7 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 118.89 113.80 5.09 0.50 N 8 1 C8 A DA 5 ? ? N9 A DA 5 ? ? C4 A DA 5 ? ? 102.47 105.80 -3.33 0.40 N 9 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 106.65 110.70 -4.05 0.50 N 10 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 107.19 103.90 3.29 0.50 N 11 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 103.95 110.10 -6.15 1.00 N 12 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 102.91 108.00 -5.09 0.70 N 13 1 OP1 A DT 9 ? ? P A DT 9 ? ? OP2 A DT 9 ? ? 133.46 119.60 13.86 1.50 N 14 1 "O5'" A DT 9 ? ? P A DT 9 ? ? OP2 A DT 9 ? ? 95.84 105.70 -9.86 0.90 N 15 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 113.77 118.00 -4.23 0.60 N 16 1 C5 A DT 9 ? ? C6 A DT 9 ? ? N1 A DT 9 ? ? 127.40 123.70 3.70 0.60 N 17 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 100.79 104.30 -3.51 0.50 N 18 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 122.49 118.00 4.49 0.70 N 19 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 125.39 121.90 3.49 0.40 N 20 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 112.75 106.00 6.75 0.60 N 21 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 102.18 110.10 -7.92 1.00 N 22 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DA 17 ? ? 127.37 119.70 7.67 1.20 Y 23 1 N9 B DA 17 ? ? C4 B DA 17 ? ? C5 B DA 17 ? ? 103.36 105.80 -2.44 0.40 N 24 1 N3 B DT 19 ? ? C2 B DT 19 ? ? O2 B DT 19 ? ? 126.26 122.30 3.96 0.60 N 25 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 103.48 106.40 -2.92 0.40 N 26 1 N9 B DG 22 ? ? C4 B DG 22 ? ? C5 B DG 22 ? ? 108.18 105.40 2.78 0.40 N 27 1 C6 B DC 23 ? ? N1 B DC 23 ? ? C2 B DC 23 ? ? 123.60 120.30 3.30 0.40 N 28 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 117.99 121.00 -3.01 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 11 ? ? 0.064 'SIDE CHAIN' 2 1 DC B 15 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2011 ? 6.38 . 2 1 O ? A HOH 2025 ? 7.57 . 3 1 O ? A HOH 2026 ? 6.27 . 4 1 O ? B HOH 2016 ? 6.33 . 5 1 O ? B HOH 2079 ? 5.81 . 6 1 O ? B HOH 2081 ? 5.82 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal D98 C1 C Y N 1 D98 C2 C Y N 2 D98 C3 C Y N 3 D98 C4 C Y N 4 D98 C5 C Y N 5 D98 C6 C Y N 6 D98 C7 C Y N 7 D98 C8 C Y N 8 D98 C9 C Y N 9 D98 C10 C Y N 10 D98 C11 C Y N 11 D98 C12 C Y N 12 D98 C13 C Y N 13 D98 N14 N Y N 14 D98 C15 C Y N 15 D98 C16 C Y N 16 D98 N17 N Y N 17 D98 C18 C Y N 18 D98 C19 C Y N 19 D98 C20 C Y N 20 D98 C21 C Y N 21 D98 C22 C N N 22 D98 N24 N N N 23 D98 N23 N N N 24 D98 C25 C N N 25 D98 N26 N N N 26 D98 N27 N N N 27 D98 OAE O N N 28 D98 H1 H N N 29 D98 HAE H N N 30 D98 H4 H N N 31 D98 H5 H N N 32 D98 H8 H N N 33 D98 H12 H N N 34 D98 H9 H N N 35 D98 H11 H N N 36 D98 H14 H N N 37 D98 H19 H N N 38 D98 H18 H N N 39 D98 H20 H N N 40 D98 H23 H N N 41 D98 H241 H N N 42 D98 H242 H N N 43 D98 H26 H N N 44 D98 H271 H N N 45 D98 H272 H N N 46 DA OP3 O N N 47 DA P P N N 48 DA OP1 O N N 49 DA OP2 O N N 50 DA "O5'" O N N 51 DA "C5'" C N N 52 DA "C4'" C N R 53 DA "O4'" O N N 54 DA "C3'" C N S 55 DA "O3'" O N N 56 DA "C2'" C N N 57 DA "C1'" C N R 58 DA N9 N Y N 59 DA C8 C Y N 60 DA N7 N Y N 61 DA C5 C Y N 62 DA C6 C Y N 63 DA N6 N N N 64 DA N1 N Y N 65 DA C2 C Y N 66 DA N3 N Y N 67 DA C4 C Y N 68 DA HOP3 H N N 69 DA HOP2 H N N 70 DA "H5'" H N N 71 DA "H5''" H N N 72 DA "H4'" H N N 73 DA "H3'" H N N 74 DA "HO3'" H N N 75 DA "H2'" H N N 76 DA "H2''" H N N 77 DA "H1'" H N N 78 DA H8 H N N 79 DA H61 H N N 80 DA H62 H N N 81 DA H2 H N N 82 DC OP3 O N N 83 DC P P N N 84 DC OP1 O N N 85 DC OP2 O N N 86 DC "O5'" O N N 87 DC "C5'" C N N 88 DC "C4'" C N R 89 DC "O4'" O N N 90 DC "C3'" C N S 91 DC "O3'" O N N 92 DC "C2'" C N N 93 DC "C1'" C N R 94 DC N1 N N N 95 DC C2 C N N 96 DC O2 O N N 97 DC N3 N N N 98 DC C4 C N N 99 DC N4 N N N 100 DC C5 C N N 101 DC C6 C N N 102 DC HOP3 H N N 103 DC HOP2 H N N 104 DC "H5'" H N N 105 DC "H5''" H N N 106 DC "H4'" H N N 107 DC "H3'" H N N 108 DC "HO3'" H N N 109 DC "H2'" H N N 110 DC "H2''" H N N 111 DC "H1'" H N N 112 DC H41 H N N 113 DC H42 H N N 114 DC H5 H N N 115 DC H6 H N N 116 DG OP3 O N N 117 DG P P N N 118 DG OP1 O N N 119 DG OP2 O N N 120 DG "O5'" O N N 121 DG "C5'" C N N 122 DG "C4'" C N R 123 DG "O4'" O N N 124 DG "C3'" C N S 125 DG "O3'" O N N 126 DG "C2'" C N N 127 DG "C1'" C N R 128 DG N9 N Y N 129 DG C8 C Y N 130 DG N7 N Y N 131 DG C5 C Y N 132 DG C6 C N N 133 DG O6 O N N 134 DG N1 N N N 135 DG C2 C N N 136 DG N2 N N N 137 DG N3 N N N 138 DG C4 C Y N 139 DG HOP3 H N N 140 DG HOP2 H N N 141 DG "H5'" H N N 142 DG "H5''" H N N 143 DG "H4'" H N N 144 DG "H3'" H N N 145 DG "HO3'" H N N 146 DG "H2'" H N N 147 DG "H2''" H N N 148 DG "H1'" H N N 149 DG H8 H N N 150 DG H1 H N N 151 DG H21 H N N 152 DG H22 H N N 153 DT OP3 O N N 154 DT P P N N 155 DT OP1 O N N 156 DT OP2 O N N 157 DT "O5'" O N N 158 DT "C5'" C N N 159 DT "C4'" C N R 160 DT "O4'" O N N 161 DT "C3'" C N S 162 DT "O3'" O N N 163 DT "C2'" C N N 164 DT "C1'" C N R 165 DT N1 N N N 166 DT C2 C N N 167 DT O2 O N N 168 DT N3 N N N 169 DT C4 C N N 170 DT O4 O N N 171 DT C5 C N N 172 DT C7 C N N 173 DT C6 C N N 174 DT HOP3 H N N 175 DT HOP2 H N N 176 DT "H5'" H N N 177 DT "H5''" H N N 178 DT "H4'" H N N 179 DT "H3'" H N N 180 DT "HO3'" H N N 181 DT "H2'" H N N 182 DT "H2''" H N N 183 DT "H1'" H N N 184 DT H3 H N N 185 DT H71 H N N 186 DT H72 H N N 187 DT H73 H N N 188 DT H6 H N N 189 HOH O O N N 190 HOH H1 H N N 191 HOH H2 H N N 192 MG MG MG N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D98 C1 C2 sing Y N 1 D98 C1 C6 doub Y N 2 D98 C2 C3 doub Y N 3 D98 C2 OAE sing N N 4 D98 C3 C4 sing Y N 5 D98 C3 C7 sing N N 6 D98 C4 C5 doub Y N 7 D98 C5 C6 sing Y N 8 D98 C6 C25 sing N N 9 D98 C7 C8 sing Y N 10 D98 C7 C12 doub Y N 11 D98 C8 C9 doub Y N 12 D98 C9 C10 sing Y N 13 D98 C10 C11 doub Y N 14 D98 C10 C13 sing N N 15 D98 C11 C12 sing Y N 16 D98 C13 N14 sing Y N 17 D98 C13 N17 doub Y N 18 D98 N14 C15 sing Y N 19 D98 C15 C16 sing Y N 20 D98 C15 C19 doub Y N 21 D98 C16 N17 sing Y N 22 D98 C16 C18 doub Y N 23 D98 C18 C21 sing Y N 24 D98 C19 C20 sing Y N 25 D98 C20 C21 doub Y N 26 D98 C21 C22 sing N N 27 D98 C22 N23 doub N N 28 D98 C22 N24 sing N N 29 D98 C25 N26 doub N N 30 D98 C25 N27 sing N N 31 D98 C1 H1 sing N N 32 D98 OAE HAE sing N N 33 D98 C4 H4 sing N N 34 D98 C5 H5 sing N N 35 D98 C8 H8 sing N N 36 D98 C12 H12 sing N N 37 D98 C9 H9 sing N N 38 D98 C11 H11 sing N N 39 D98 N14 H14 sing N N 40 D98 C19 H19 sing N N 41 D98 C18 H18 sing N N 42 D98 C20 H20 sing N N 43 D98 N23 H23 sing N N 44 D98 N24 H241 sing N N 45 D98 N24 H242 sing N N 46 D98 N26 H26 sing N N 47 D98 N27 H271 sing N N 48 D98 N27 H272 sing N N 49 DA OP3 P sing N N 50 DA OP3 HOP3 sing N N 51 DA P OP1 doub N N 52 DA P OP2 sing N N 53 DA P "O5'" sing N N 54 DA OP2 HOP2 sing N N 55 DA "O5'" "C5'" sing N N 56 DA "C5'" "C4'" sing N N 57 DA "C5'" "H5'" sing N N 58 DA "C5'" "H5''" sing N N 59 DA "C4'" "O4'" sing N N 60 DA "C4'" "C3'" sing N N 61 DA "C4'" "H4'" sing N N 62 DA "O4'" "C1'" sing N N 63 DA "C3'" "O3'" sing N N 64 DA "C3'" "C2'" sing N N 65 DA "C3'" "H3'" sing N N 66 DA "O3'" "HO3'" sing N N 67 DA "C2'" "C1'" sing N N 68 DA "C2'" "H2'" sing N N 69 DA "C2'" "H2''" sing N N 70 DA "C1'" N9 sing N N 71 DA "C1'" "H1'" sing N N 72 DA N9 C8 sing Y N 73 DA N9 C4 sing Y N 74 DA C8 N7 doub Y N 75 DA C8 H8 sing N N 76 DA N7 C5 sing Y N 77 DA C5 C6 sing Y N 78 DA C5 C4 doub Y N 79 DA C6 N6 sing N N 80 DA C6 N1 doub Y N 81 DA N6 H61 sing N N 82 DA N6 H62 sing N N 83 DA N1 C2 sing Y N 84 DA C2 N3 doub Y N 85 DA C2 H2 sing N N 86 DA N3 C4 sing Y N 87 DC OP3 P sing N N 88 DC OP3 HOP3 sing N N 89 DC P OP1 doub N N 90 DC P OP2 sing N N 91 DC P "O5'" sing N N 92 DC OP2 HOP2 sing N N 93 DC "O5'" "C5'" sing N N 94 DC "C5'" "C4'" sing N N 95 DC "C5'" "H5'" sing N N 96 DC "C5'" "H5''" sing N N 97 DC "C4'" "O4'" sing N N 98 DC "C4'" "C3'" sing N N 99 DC "C4'" "H4'" sing N N 100 DC "O4'" "C1'" sing N N 101 DC "C3'" "O3'" sing N N 102 DC "C3'" "C2'" sing N N 103 DC "C3'" "H3'" sing N N 104 DC "O3'" "HO3'" sing N N 105 DC "C2'" "C1'" sing N N 106 DC "C2'" "H2'" sing N N 107 DC "C2'" "H2''" sing N N 108 DC "C1'" N1 sing N N 109 DC "C1'" "H1'" sing N N 110 DC N1 C2 sing N N 111 DC N1 C6 sing N N 112 DC C2 O2 doub N N 113 DC C2 N3 sing N N 114 DC N3 C4 doub N N 115 DC C4 N4 sing N N 116 DC C4 C5 sing N N 117 DC N4 H41 sing N N 118 DC N4 H42 sing N N 119 DC C5 C6 doub N N 120 DC C5 H5 sing N N 121 DC C6 H6 sing N N 122 DG OP3 P sing N N 123 DG OP3 HOP3 sing N N 124 DG P OP1 doub N N 125 DG P OP2 sing N N 126 DG P "O5'" sing N N 127 DG OP2 HOP2 sing N N 128 DG "O5'" "C5'" sing N N 129 DG "C5'" "C4'" sing N N 130 DG "C5'" "H5'" sing N N 131 DG "C5'" "H5''" sing N N 132 DG "C4'" "O4'" sing N N 133 DG "C4'" "C3'" sing N N 134 DG "C4'" "H4'" sing N N 135 DG "O4'" "C1'" sing N N 136 DG "C3'" "O3'" sing N N 137 DG "C3'" "C2'" sing N N 138 DG "C3'" "H3'" sing N N 139 DG "O3'" "HO3'" sing N N 140 DG "C2'" "C1'" sing N N 141 DG "C2'" "H2'" sing N N 142 DG "C2'" "H2''" sing N N 143 DG "C1'" N9 sing N N 144 DG "C1'" "H1'" sing N N 145 DG N9 C8 sing Y N 146 DG N9 C4 sing Y N 147 DG C8 N7 doub Y N 148 DG C8 H8 sing N N 149 DG N7 C5 sing Y N 150 DG C5 C6 sing N N 151 DG C5 C4 doub Y N 152 DG C6 O6 doub N N 153 DG C6 N1 sing N N 154 DG N1 C2 sing N N 155 DG N1 H1 sing N N 156 DG C2 N2 sing N N 157 DG C2 N3 doub N N 158 DG N2 H21 sing N N 159 DG N2 H22 sing N N 160 DG N3 C4 sing N N 161 DT OP3 P sing N N 162 DT OP3 HOP3 sing N N 163 DT P OP1 doub N N 164 DT P OP2 sing N N 165 DT P "O5'" sing N N 166 DT OP2 HOP2 sing N N 167 DT "O5'" "C5'" sing N N 168 DT "C5'" "C4'" sing N N 169 DT "C5'" "H5'" sing N N 170 DT "C5'" "H5''" sing N N 171 DT "C4'" "O4'" sing N N 172 DT "C4'" "C3'" sing N N 173 DT "C4'" "H4'" sing N N 174 DT "O4'" "C1'" sing N N 175 DT "C3'" "O3'" sing N N 176 DT "C3'" "C2'" sing N N 177 DT "C3'" "H3'" sing N N 178 DT "O3'" "HO3'" sing N N 179 DT "C2'" "C1'" sing N N 180 DT "C2'" "H2'" sing N N 181 DT "C2'" "H2''" sing N N 182 DT "C1'" N1 sing N N 183 DT "C1'" "H1'" sing N N 184 DT N1 C2 sing N N 185 DT N1 C6 sing N N 186 DT C2 O2 doub N N 187 DT C2 N3 sing N N 188 DT N3 C4 sing N N 189 DT N3 H3 sing N N 190 DT C4 O4 doub N N 191 DT C4 C5 sing N N 192 DT C5 C7 sing N N 193 DT C5 C6 doub N N 194 DT C7 H71 sing N N 195 DT C7 H72 sing N N 196 DT C7 H73 sing N N 197 DT C6 H6 sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 # _ndb_struct_conf_na.entry_id 4AH0 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.243 -0.144 0.051 3.667 -18.468 1.136 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.188 -0.145 0.247 1.820 -6.543 -1.935 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.201 -0.109 0.026 -1.174 -5.249 0.125 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 -0.120 -0.011 -0.226 11.020 -13.354 2.268 4 A_DA4:DT21_B A 4 ? B 21 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 0.047 -0.049 -0.068 7.442 -18.306 3.446 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.078 -0.080 0.085 2.734 -20.028 7.926 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.019 -0.102 0.041 -1.192 -21.969 6.482 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.031 -0.130 0.018 -7.508 -17.145 4.286 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.045 -0.064 -0.176 -9.873 -12.377 -2.273 9 A_DT9:DA16_B A 9 ? B 16 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.163 -0.119 0.083 10.311 -4.466 1.561 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.040 -0.208 0.196 10.105 -25.038 -2.836 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.316 -0.105 -0.142 9.655 18.082 -2.016 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.276 0.211 3.353 -0.874 5.919 35.368 -0.533 0.319 3.349 9.657 1.426 35.854 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.801 0.513 3.420 2.538 -3.747 40.610 1.165 -0.856 3.403 -5.378 -3.644 40.851 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.409 0.672 3.158 4.543 7.346 28.269 -0.215 1.752 3.128 14.615 -9.038 29.533 3 AA_DC3DA4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 0.010 0.209 3.326 -1.146 2.113 37.775 0.045 -0.166 3.331 3.259 1.769 37.848 4 AA_DA4DA5:DT20DT21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.475 -0.197 3.318 -1.801 4.007 36.221 -0.874 -1.010 3.252 6.416 2.883 36.477 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.218 -0.596 3.306 0.063 0.779 30.720 -1.278 0.423 3.290 1.470 -0.119 30.729 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.440 -0.195 3.339 0.763 2.884 35.776 -0.736 0.826 3.304 4.685 -1.240 35.896 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.177 0.219 3.297 2.338 -1.395 39.869 0.481 0.529 3.273 -2.043 -3.424 39.958 8 AA_DT8DT9:DA16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.670 1.173 2.972 -3.544 3.734 27.416 1.614 -2.167 2.993 7.792 7.395 27.886 9 AA_DT9DG10:DC15DA16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.104 0.647 3.360 -2.559 -10.915 43.810 1.835 1.206 3.176 -14.350 3.365 45.153 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.262 0.809 3.590 2.891 -9.436 36.234 2.595 -1.553 3.369 -14.836 -4.546 37.510 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" D98 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1S2R _pdbx_initial_refinement_model.details 'PDB ENTRY 1S2R' #