HEADER HYDROLASE 16-FEB-12 4AJG TITLE IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 TITLE 2 FRAGMENT INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3', 5'-CYCLIC COMPND 3 PHOSPHODIESTERASE 10A; COMPND 4 CHAIN: A, D; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 439-764; COMPND 6 SYNONYM: PDE10, PHOSPHODIESTERASE 10A; COMPND 7 EC: 3.1.4.17, 3.1.4.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JOHANSSON,J.S.ALBERT,L.SPADOLA,T.AKERUD,E.BACK,P.HILLERTZ, AUTHOR 2 R.HORSEFELD,C.SCOTT,N.SPEAR,G.TIAN,A.TIGERSTROM,D.AHARONY, AUTHOR 3 S.GESCHWINDNER REVDAT 1 06-MAR-13 4AJG 0 JRNL AUTH P.JOHANSSON,J.S.ALBERT,L.SPADOLA,T.AKERUD,E.BACK,P.HILLERTZ, JRNL AUTH 2 R.HORSEFELD,C.SCOTT,N.SPEAR,G.TIAN,A.TIGERSTROM,D.AHARONY, JRNL AUTH 3 S.GESCHWINDNER JRNL TITL IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 JRNL TITL 2 FRAGMENT INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 81.67 REMARK 3 NUMBER OF REFLECTIONS : 22611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21602 REMARK 3 R VALUE (WORKING SET) : 0.21275 REMARK 3 FREE R VALUE : 0.27699 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.300 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.360 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.333 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.436 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.045 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.34 REMARK 3 B22 (A**2) : -2.49 REMARK 3 B33 (A**2) : 0.15 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5396 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7314 ; 1.382 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 5.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;37.630 ;24.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 952 ;17.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 798 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4129 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3227 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5235 ; 1.035 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 1.451 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2079 ; 2.339 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 448 A 769 5 REMARK 3 1 D 448 D 769 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1272 ; 0.25 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1272 ; 0.25 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1298 ; 0.54 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 1298 ; 0.54 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1272 ; 0.77 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1272 ; 0.77 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1298 ; 0.91 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 1298 ; 0.91 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-12. REMARK 100 THE PDBE ID CODE IS EBI-51317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 47.31 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.13 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.2 REMARK 200 R MERGE FOR SHELL (I) : 0.88 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-18% PEG3350, 4-10 MM TCEP, REMARK 280 100 MM HEPES PH 7.5 AND 200MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.59900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.73300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.59900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.73300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 447 REMARK 465 GLU A 769 REMARK 465 GLU A 770 REMARK 465 THR A 771 REMARK 465 ALA A 772 REMARK 465 THR A 773 REMARK 465 TRP A 774 REMARK 465 ASN D 447 REMARK 465 GLU D 770 REMARK 465 THR D 771 REMARK 465 ALA D 772 REMARK 465 THR D 773 REMARK 465 TRP D 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 1770 O HOH A 2020 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 498 CA - CB - SG ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 465 130.92 -39.47 REMARK 500 ASN A 544 39.62 -141.42 REMARK 500 ASP A 579 71.19 41.76 REMARK 500 THR A 590 -72.02 -48.81 REMARK 500 GLU A 606 109.40 -37.46 REMARK 500 ASP A 634 96.70 -66.40 REMARK 500 TRP A 682 -57.29 -27.99 REMARK 500 VAL A 733 -66.57 -124.56 REMARK 500 LYS A 764 0.80 -67.48 REMARK 500 ARG A 767 46.46 -90.49 REMARK 500 SER D 497 -74.03 -86.00 REMARK 500 TYR D 524 -49.78 -137.77 REMARK 500 ASN D 526 -166.70 -118.14 REMARK 500 ASP D 579 63.19 32.03 REMARK 500 THR D 613 52.02 -108.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1769 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 529 NE2 REMARK 620 2 ASP A 564 OD2 86.8 REMARK 620 3 HOH A2019 O 161.0 93.5 REMARK 620 4 HIS A 563 NE2 104.7 84.0 94.2 REMARK 620 5 ASP A 674 OD1 85.5 164.9 98.1 85.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1770 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 563 NE2 REMARK 620 2 HIS D 529 NE2 106.8 REMARK 620 3 ASP D 674 OD1 86.3 95.6 REMARK 620 4 HOH D2019 O 168.5 84.5 90.4 REMARK 620 5 HOH D2024 O 87.6 165.5 85.8 81.1 REMARK 620 6 ASP D 564 OD2 93.4 85.9 178.5 89.6 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1770 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 HOH A2018 O 90.0 REMARK 620 3 HOH A2019 O 92.5 83.6 REMARK 620 4 HOH A2022 O 159.9 69.9 85.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1771 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2023 O REMARK 620 2 HOH D2024 O 84.4 REMARK 620 3 HOH D2028 O 82.7 86.8 REMARK 620 4 ASP D 564 OD1 80.4 88.6 162.8 REMARK 620 5 HOH D2020 O 172.3 97.2 89.9 107.1 REMARK 620 6 HOH D2025 O 92.9 175.8 89.7 94.1 85.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1769 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F07 A1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F07 D1772 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LRB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 10A REMARK 900 RELATED ID: 2WEY RELATED DB: PDB REMARK 900 HUMAN PDE-PAPAVERINE COMPLEX OBTAINED BY LIGAND SOAKING REMARK 900 OF CROSS-LINKED PROTEIN CRYSTALS REMARK 900 RELATED ID: 2Y0J RELATED DB: PDB REMARK 900 TRIAZOLOQUINAZOLINES AS A NOVEL CLASS OF PHOSPHODIESTERASE REMARK 900 10A (PDE10A) INHIBITORS, PART 2, LEAD-OPTIMISATION. REMARK 900 RELATED ID: 4AEL RELATED DB: PDB REMARK 900 PDE10A IN COMPLEX WITH THE INHIBITOR AZ5 REMARK 900 RELATED ID: 4AJD RELATED DB: PDB REMARK 900 IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 REMARK 900 FRAGMENT INHIBITORS REMARK 900 RELATED ID: 4AJF RELATED DB: PDB REMARK 900 IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 REMARK 900 FRAGMENT INHIBITORS REMARK 900 RELATED ID: 4AJM RELATED DB: PDB REMARK 900 DEVELOPMENT OF A PLATE-BASED OPTICAL BIOSENSOR REMARK 900 METHODOLOGY TO IDENTIFY PDE10 FRAGMENT INHIBITORS DBREF 4AJG A 449 774 UNP Q9Y233 PDE10_HUMAN 439 764 DBREF 4AJG D 449 774 UNP Q9Y233 PDE10_HUMAN 439 764 SEQADV 4AJG ASN A 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJG ALA A 448 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJG ASN D 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJG ALA D 448 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 328 ASN ALA SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 A 328 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 A 328 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 A 328 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 A 328 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 A 328 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 A 328 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 A 328 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 A 328 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 A 328 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 A 328 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 A 328 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 A 328 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 A 328 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 A 328 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 A 328 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 A 328 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 A 328 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 A 328 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 A 328 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 A 328 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 A 328 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 A 328 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 A 328 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 A 328 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 A 328 ALA THR TRP SEQRES 1 D 328 ASN ALA SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 D 328 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 D 328 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 D 328 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 D 328 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 D 328 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 D 328 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 D 328 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 D 328 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 D 328 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 D 328 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 D 328 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 D 328 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 D 328 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 D 328 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 D 328 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 D 328 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 D 328 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 D 328 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 D 328 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 D 328 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 D 328 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 D 328 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 D 328 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 D 328 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 D 328 ALA THR TRP HET ZN D1770 1 HET ZN A1769 1 HET MG D1771 1 HET MG A1770 1 HET F07 A1771 13 HET F07 D1772 13 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM F07 THIENO[3,2-C][1,6]NAPHTHYRIDINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 F07 2(C10 H6 N2 S) FORMUL 6 HOH *81(H2 O) HELIX 1 1 THR A 452 PHE A 462 1 11 HELIX 2 2 PRO A 465 LYS A 470 1 6 HELIX 3 3 ILE A 479 ASN A 484 5 6 HELIX 4 4 MET A 485 GLY A 499 1 15 HELIX 5 5 GLU A 504 ASN A 518 1 15 HELIX 6 6 ASN A 526 ASN A 544 1 19 HELIX 7 7 HIS A 545 PHE A 548 5 4 HELIX 8 8 THR A 549 HIS A 563 1 15 HELIX 9 9 SER A 571 PHE A 578 1 8 HELIX 10 10 HIS A 580 TYR A 586 1 7 HELIX 11 11 SER A 589 GLN A 604 1 16 HELIX 12 12 SER A 615 THR A 633 1 19 HELIX 13 13 ASP A 634 GLY A 652 1 19 HELIX 14 14 ASN A 658 LEU A 675 1 18 HELIX 15 15 CYS A 676 LYS A 680 5 5 HELIX 16 16 LEU A 681 LEU A 706 1 26 HELIX 17 17 ILE A 711 ASP A 715 5 5 HELIX 18 18 ASP A 715 ASP A 720 5 6 HELIX 19 19 GLU A 721 VAL A 733 1 13 HELIX 20 20 VAL A 733 LEU A 745 1 13 HELIX 21 21 THR A 748 ARG A 767 1 20 HELIX 22 22 THR D 452 GLN D 461 1 10 HELIX 23 23 PRO D 465 CYS D 469 5 5 HELIX 24 24 LYS D 470 LEU D 474 5 5 HELIX 25 25 ILE D 479 ASN D 484 5 6 HELIX 26 26 MET D 485 CYS D 498 1 14 HELIX 27 27 GLU D 504 ASN D 518 1 15 HELIX 28 28 ASN D 526 ASN D 544 1 19 HELIX 29 29 THR D 549 HIS D 563 1 15 HELIX 30 30 SER D 571 PHE D 578 1 8 HELIX 31 31 HIS D 580 TYR D 586 1 7 HELIX 32 32 SER D 589 GLN D 604 1 16 HELIX 33 33 SER D 615 ALA D 632 1 18 HELIX 34 34 ASP D 634 THR D 651 1 18 HELIX 35 35 ASN D 658 LEU D 675 1 18 HELIX 36 36 CYS D 676 LYS D 680 5 5 HELIX 37 37 LEU D 681 LYS D 705 1 25 HELIX 38 38 ILE D 711 ASP D 715 5 5 HELIX 39 39 ASP D 715 ASP D 720 5 6 HELIX 40 40 GLU D 721 VAL D 733 1 13 HELIX 41 41 VAL D 733 LEU D 745 1 13 HELIX 42 42 THR D 748 GLY D 768 1 21 SSBOND 1 CYS A 498 CYS A 502 1555 1555 2.03 SSBOND 2 CYS D 498 CYS D 502 1555 1555 2.00 LINK ZN ZN A1769 NE2 HIS A 529 1555 1555 2.35 LINK ZN ZN A1769 OD2 ASP A 564 1555 1555 1.96 LINK ZN ZN A1769 O HOH A2019 1555 1555 2.27 LINK ZN ZN A1769 NE2 HIS A 563 1555 1555 1.92 LINK ZN ZN A1769 OD1 ASP A 674 1555 1555 2.03 LINK MG MG A1770 OD1 ASP A 564 1555 1555 1.98 LINK MG MG A1770 O HOH A2018 1555 1555 2.18 LINK MG MG A1770 O HOH A2022 1555 1555 2.21 LINK MG MG A1770 O HOH A2019 1555 1555 1.94 LINK ZN ZN D1770 O HOH D2024 1555 1555 2.00 LINK ZN ZN D1770 OD2 ASP D 564 1555 1555 2.30 LINK ZN ZN D1770 NE2 HIS D 563 1555 1555 1.88 LINK ZN ZN D1770 O HOH D2019 1555 1555 1.99 LINK ZN ZN D1770 OD1 ASP D 674 1555 1555 2.11 LINK ZN ZN D1770 NE2 HIS D 529 1555 1555 2.17 LINK MG MG D1771 O HOH D2024 1555 1555 2.39 LINK MG MG D1771 O HOH D2028 1555 1555 1.94 LINK MG MG D1771 OD1 ASP D 564 1555 1555 1.95 LINK MG MG D1771 O HOH D2020 1555 1555 1.96 LINK MG MG D1771 O HOH D2025 1555 1555 2.07 LINK MG MG D1771 O HOH D2023 1555 1555 2.16 SITE 1 AC1 6 HIS D 529 HIS D 563 ASP D 564 ASP D 674 SITE 2 AC1 6 HOH D2019 HOH D2024 SITE 1 AC2 5 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC2 5 HOH A2019 SITE 1 AC3 6 ASP D 564 HOH D2020 HOH D2023 HOH D2024 SITE 2 AC3 6 HOH D2025 HOH D2028 SITE 1 AC4 5 ASP A 564 HOH A2018 HOH A2019 HOH A2020 SITE 2 AC4 5 HOH A2022 SITE 1 AC5 5 VAL A 678 ILE A 692 MET A 713 GLN A 726 SITE 2 AC5 5 PHE A 729 SITE 1 AC6 5 SER D 677 ILE D 692 MET D 713 GLN D 726 SITE 2 AC6 5 PHE D 729 CRYST1 49.609 81.466 157.198 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006361 0.00000 MTRIX1 1 -0.174000 -0.943000 -0.284000 -0.04220 1 MTRIX2 1 0.981000 -0.140000 -0.135000 -0.77611 1 MTRIX3 1 0.088000 -0.302000 0.949000 0.05220 1