HEADER SUGAR BINDING PROTEIN 22-FEB-12 4AKB TITLE STRUCTURE OF GALACTOSE BINDING LECTIN FROM CHAMPEDAK (CGB) WITH TITLE 2 GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN, CHAMPEDAK GALACTOSE BINDING LECTIN COMPND 5 ALPHA CHAIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AGGLUTININ BETA-4 CHAIN; COMPND 8 CHAIN: B, D, F, H; COMPND 9 SYNONYM: CHAMPEDAK GALACTOSE BINDING LECTIN BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 6 ORGANISM_TAXID: 3490 KEYWDS SUGAR BINDING PROTEIN, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,P.S.ABDUL-RAHMAN,S.OTHMAN,O.H.HASHIM,R.J.COGDELL REVDAT 5 20-DEC-23 4AKB 1 REMARK HETSYN REVDAT 4 29-JUL-20 4AKB 1 COMPND REMARK HETNAM SITE REVDAT 3 18-JUN-14 4AKB 1 JRNL REVDAT 2 11-JUN-14 4AKB 1 JRNL REVDAT 1 27-FEB-13 4AKB 0 JRNL AUTH M.GABRIELSEN,P.S.ABDUL-RAHMAN,S.OTHMAN,O.H.HASHIM, JRNL AUTH 2 R.J.COGDELL JRNL TITL STRUCTURES AND BINDING SPECIFICITY OF GALACTOSE- AND JRNL TITL 2 MANNOSE-BINDING LECTINS FROM CHAMPEDAK: DIFFERENCES FROM JRNL TITL 3 JACKFRUIT LECTINS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 70 709 2014 JRNL REFN ESSN 1744-3091 JRNL PMID 24915077 JRNL DOI 10.1107/S2053230X14008966 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 52163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2628 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3636 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2123 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3450 REMARK 3 BIN R VALUE (WORKING SET) : 0.2112 REMARK 3 BIN FREE R VALUE : 0.2327 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.12 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99040 REMARK 3 B22 (A**2) : -9.24580 REMARK 3 B33 (A**2) : 4.25540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.132 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.119 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4779 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6484 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1551 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 694 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4779 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 617 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5663 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.81 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 19.5828 49.4254 15.8406 REMARK 3 T TENSOR REMARK 3 T11: -0.1363 T22: -0.1223 REMARK 3 T33: 0.0853 T12: 0.0126 REMARK 3 T13: 0.0422 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 1.2622 L22: 3.3187 REMARK 3 L33: 1.4068 L12: 0.1161 REMARK 3 L13: 0.1683 L23: -1.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0109 S13: 0.0669 REMARK 3 S21: -0.0971 S22: -0.2601 S23: -0.6842 REMARK 3 S31: -0.0268 S32: 0.1803 S33: 0.2550 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 6.8693 47.0179 22.9797 REMARK 3 T TENSOR REMARK 3 T11: -0.0063 T22: -0.0217 REMARK 3 T33: 0.0259 T12: -0.0018 REMARK 3 T13: -0.0303 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3216 L22: 1.0148 REMARK 3 L33: 0.4178 L12: 1.9638 REMARK 3 L13: 1.0778 L23: 0.4518 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0797 S13: 0.0655 REMARK 3 S21: 0.0451 S22: -0.0964 S23: -0.0592 REMARK 3 S31: -0.0829 S32: 0.0054 S33: 0.1163 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -14.2233 45.8190 0.5118 REMARK 3 T TENSOR REMARK 3 T11: -0.0191 T22: -0.0831 REMARK 3 T33: -0.0569 T12: 0.0093 REMARK 3 T13: -0.1082 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.4825 L22: 2.2456 REMARK 3 L33: 0.8027 L12: 0.8193 REMARK 3 L13: -0.2374 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: 0.4776 S13: 0.2873 REMARK 3 S21: -0.4335 S22: 0.1148 S23: 0.3306 REMARK 3 S31: -0.0601 S32: -0.1248 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -3.0261 34.7805 3.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: -0.0379 REMARK 3 T33: -0.0439 T12: 0.0161 REMARK 3 T13: -0.0250 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.8694 L22: 0.2428 REMARK 3 L33: 0.0000 L12: 1.0255 REMARK 3 L13: -0.5722 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.2476 S13: -0.1230 REMARK 3 S21: -0.3193 S22: 0.0236 S23: -0.0161 REMARK 3 S31: 0.1696 S32: -0.1083 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 12.4205 29.9336 34.9097 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: -0.0012 REMARK 3 T33: 0.0047 T12: -0.0028 REMARK 3 T13: -0.0140 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.8834 L22: 0.4440 REMARK 3 L33: 0.8811 L12: -0.2386 REMARK 3 L13: 0.6788 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.1575 S13: -0.1289 REMARK 3 S21: 0.0176 S22: -0.0211 S23: -0.0339 REMARK 3 S31: 0.1089 S32: 0.0377 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 9.7665 29.3602 18.6402 REMARK 3 T TENSOR REMARK 3 T11: -0.0238 T22: -0.0283 REMARK 3 T33: 0.0382 T12: 0.0125 REMARK 3 T13: -0.0228 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.3601 L22: 0.5474 REMARK 3 L33: 0.0000 L12: -2.3024 REMARK 3 L13: -0.4740 L23: -0.8495 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.2035 S13: -0.1723 REMARK 3 S21: -0.1000 S22: -0.1757 S23: 0.0554 REMARK 3 S31: 0.0152 S32: 0.1894 S33: 0.1421 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): -17.2086 21.3130 14.3365 REMARK 3 T TENSOR REMARK 3 T11: -0.0325 T22: -0.1175 REMARK 3 T33: -0.0043 T12: -0.0491 REMARK 3 T13: -0.0838 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.7496 L22: 1.0282 REMARK 3 L33: 2.1208 L12: 0.6855 REMARK 3 L13: 1.2035 L23: 0.3636 REMARK 3 S TENSOR REMARK 3 S11: 0.2447 S12: -0.1461 S13: -0.4607 REMARK 3 S21: 0.0554 S22: -0.0846 S23: -0.0670 REMARK 3 S31: 0.3121 S32: -0.2939 S33: -0.1601 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -12.6592 35.6196 20.0803 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: -0.0021 REMARK 3 T33: 0.0141 T12: -0.0021 REMARK 3 T13: -0.0279 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.3821 L22: 0.0000 REMARK 3 L33: 0.6107 L12: -0.1445 REMARK 3 L13: -0.2862 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.0888 S13: 0.0129 REMARK 3 S21: -0.1265 S22: -0.0589 S23: 0.0950 REMARK 3 S31: -0.0994 S32: -0.0366 S33: 0.0973 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4AKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 77.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AK4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 100 MM PHOSPHATE/CITRATE REMARK 280 BUFFER PH 4.2, PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.14300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.14300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 THR B 21 REMARK 465 ASN D 1 REMARK 465 GLU D 2 REMARK 465 VAL D 19 REMARK 465 SER D 20 REMARK 465 THR D 21 REMARK 465 ASN F 1 REMARK 465 GLU F 2 REMARK 465 GLN F 18 REMARK 465 VAL F 19 REMARK 465 SER F 20 REMARK 465 THR F 21 REMARK 465 ASN H 1 REMARK 465 GLU H 2 REMARK 465 VAL H 19 REMARK 465 SER H 20 REMARK 465 THR H 21 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CG CD CE NZ REMARK 480 GLU A 22 CB CG CD OE1 OE2 REMARK 480 LYS A 74 CE NZ REMARK 480 LYS A 87 CD CE NZ REMARK 480 LYS A 90 CE NZ REMARK 480 GLN B 18 CD OE1 NE2 REMARK 480 LYS C 21 CB CG CD CE NZ REMARK 480 GLU C 22 CB CG CD OE1 OE2 REMARK 480 LYS C 45 CE NZ REMARK 480 LYS C 74 CE NZ REMARK 480 LYS C 91 CD CE NZ REMARK 480 GLN D 18 CG CD OE1 NE2 REMARK 480 LYS E 2 CG CD CE NZ REMARK 480 LYS E 45 CD CE NZ REMARK 480 LYS E 90 CE NZ REMARK 480 GLN F 3 CG CD OE1 NE2 REMARK 480 LYS G 21 CG CD CE NZ REMARK 480 GLU G 22 CG CD OE1 OE2 REMARK 480 GLU G 42 CD OE1 OE2 REMARK 480 LYS G 74 CD CE NZ REMARK 480 GLN H 18 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 ILE G 65 CD1 ILE G 113 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE B 6 C SER B 7 N -0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 -4.78 -58.20 REMARK 500 THR A 23 -91.40 -113.96 REMARK 500 THR C 23 -96.03 -110.15 REMARK 500 THR E 23 -108.80 -127.97 REMARK 500 THR G 23 -97.05 -122.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 1134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AK4 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF GALACTOSE BINDING LECTIN FROM REMARK 900 CHAMPEDAK (CGB) REMARK 900 RELATED ID: 4AKC RELATED DB: PDB REMARK 900 STRUCTURE OF GALACTOSE BINDING LECTIN FROM CHAMPEDAK ( CGB) WITH REMARK 900 GAL(BETA)1,3-GALNAC REMARK 900 RELATED ID: 4AKD RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF MANNOSE BINDING LECTIN FROM CHAMPEDAK REMARK 900 (CMB) REMARK 999 REMARK 999 SEQUENCE REMARK 999 CROSS-REFERENCE IS TO NEAREST UNIPROT BUT SEQUENCE IS REMARK 999 VARIANT WITH GENBANK REFERENCE GB FR728240. DBREF 4AKB A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKB B 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKB C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKB D 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKB E 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKB F 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKB G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKB H 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 SEQADV 4AKB GLU A 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKB LYS A 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKB SER A 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKB SER B 20 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB THR B 21 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB GLU C 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKB LYS C 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKB SER C 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKB SER D 20 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB THR D 21 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB GLU E 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKB LYS E 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKB SER E 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKB SER F 20 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB THR F 21 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB GLU G 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKB LYS G 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKB SER G 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKB SER H 20 UNP Q9S8T0 SEE REMARK 999 SEQADV 4AKB THR H 21 UNP Q9S8T0 SEE REMARK 999 SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 B 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 D 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 F 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 H 21 PRO TRP GLY ALA GLN VAL SER THR HET P6G A1134 9 HET GAL C1134 12 HET GAL E1134 12 HET GAL G1134 12 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 9 P6G C12 H26 O7 FORMUL 10 GAL 3(C6 H12 O6) FORMUL 13 HOH *266(H2 O) SHEET 1 AA 8 LYS A 2 ASP A 5 0 SHEET 2 AA 8 LEU A 112 ILE A 120 -1 O GLY A 118 N PHE A 4 SHEET 3 AA 8 LEU A 124 SER A 132 -1 N ASP A 125 O SER A 119 SHEET 4 AA 8 VAL B 10 GLY B 16 -1 O VAL B 10 N LEU A 131 SHEET 5 AA 8 THR E 102 ASN E 110 -1 O PRO E 107 N GLY B 13 SHEET 6 AA 8 ILE E 65 VAL E 75 -1 O MET E 66 N ILE E 108 SHEET 7 AA 8 TYR E 78 THR E 88 -1 O TYR E 78 N VAL E 75 SHEET 8 AA 8 THR E 92 TYR E 96 -1 O TYR E 93 N PHE E 86 SHEET 1 AB 4 SER A 37 VAL A 40 0 SHEET 2 AB 4 ILE A 25 LEU A 34 -1 O TYR A 32 N TYR A 39 SHEET 3 AB 4 GLY A 11 TYR A 19 -1 O GLY A 11 N ASP A 33 SHEET 4 AB 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 AC 8 THR A 92 GLY A 97 0 SHEET 2 AC 8 TYR A 78 THR A 88 -1 O LEU A 84 N TYR A 96 SHEET 3 AC 8 ILE A 65 VAL A 75 -1 N MET A 66 O LYS A 87 SHEET 4 AC 8 THR A 102 ASN A 110 -1 O THR A 102 N THR A 72 SHEET 5 AC 8 VAL F 10 GLY F 16 -1 O ILE F 11 N ASN A 110 SHEET 6 AC 8 LEU E 124 SER E 132 -1 O PHE E 127 N TRP F 15 SHEET 7 AC 8 LEU E 112 ILE E 120 -1 O LEU E 112 N SER E 132 SHEET 8 AC 8 LYS E 2 ASP E 5 -1 O LYS E 2 N ILE E 120 SHEET 1 CA 8 LYS C 2 ASP C 5 0 SHEET 2 CA 8 LEU C 112 ILE C 120 -1 O GLY C 118 N PHE C 4 SHEET 3 CA 8 LEU C 124 SER C 132 -1 N ASP C 125 O SER C 119 SHEET 4 CA 8 VAL D 10 GLY D 16 -1 O VAL D 10 N LEU C 131 SHEET 5 CA 8 THR G 102 ASN G 110 -1 O PRO G 107 N GLY D 13 SHEET 6 CA 8 GLU G 67 VAL G 75 -1 O VAL G 68 N LEU G 106 SHEET 7 CA 8 TYR G 78 LYS G 87 -1 O TYR G 78 N VAL G 75 SHEET 8 CA 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 CB 4 SER C 37 VAL C 40 0 SHEET 2 CB 4 ILE C 25 LEU C 34 -1 O TYR C 32 N TYR C 39 SHEET 3 CB 4 GLY C 11 TYR C 19 -1 O GLY C 11 N ASP C 33 SHEET 4 CB 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 CC 8 THR C 92 GLY C 97 0 SHEET 2 CC 8 TYR C 78 THR C 88 -1 O LEU C 84 N TYR C 96 SHEET 3 CC 8 ILE C 65 VAL C 75 -1 N MET C 66 O LYS C 87 SHEET 4 CC 8 THR C 102 ASN C 110 -1 O THR C 102 N THR C 72 SHEET 5 CC 8 VAL H 10 GLY H 16 -1 O ILE H 11 N GLU C 109 SHEET 6 CC 8 LEU G 124 SER G 132 -1 O PHE G 127 N TRP H 15 SHEET 7 CC 8 LEU G 112 ILE G 120 -1 O LEU G 112 N SER G 132 SHEET 8 CC 8 LYS G 2 ASP G 5 -1 O LYS G 2 N ILE G 120 SHEET 1 EA 4 SER E 37 VAL E 40 0 SHEET 2 EA 4 ILE E 25 LEU E 34 -1 O TYR E 32 N TYR E 39 SHEET 3 EA 4 GLY E 11 TYR E 19 -1 O GLY E 11 N ASP E 33 SHEET 4 EA 4 THR E 52 SER E 57 -1 O THR E 52 N TYR E 19 SHEET 1 GA 4 SER G 37 VAL G 40 0 SHEET 2 GA 4 ILE G 25 LEU G 34 -1 O TYR G 32 N TYR G 39 SHEET 3 GA 4 GLY G 11 TYR G 19 -1 O GLY G 11 N ASP G 33 SHEET 4 GA 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19 CISPEP 1 PHE A 60 PRO A 61 0 -0.82 CISPEP 2 GLY A 94 PRO A 95 0 2.58 CISPEP 3 GLY B 13 PRO B 14 0 1.41 CISPEP 4 PHE C 60 PRO C 61 0 5.32 CISPEP 5 GLY C 94 PRO C 95 0 2.70 CISPEP 6 GLY D 13 PRO D 14 0 1.51 CISPEP 7 PHE E 60 PRO E 61 0 0.74 CISPEP 8 GLY E 94 PRO E 95 0 3.67 CISPEP 9 GLY F 13 PRO F 14 0 4.07 CISPEP 10 PHE G 60 PRO G 61 0 2.86 CISPEP 11 GLY G 94 PRO G 95 0 4.47 CISPEP 12 GLY H 13 PRO H 14 0 5.99 CRYST1 76.286 121.030 77.638 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012880 0.00000