HEADER MEMBRANE PROTEIN 04-APR-12 4APM TITLE CRYSTAL STRUCTURE OF AMA1 FROM BABESIA DIVERGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS I/II/III, RESIDUES 93-517; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA DIVERGENS; SOURCE 3 ORGANISM_TAXID: 32595; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MEMBRANE PROTEIN, APICOMPLEXA, MOVING JUNCTION, INVASION EXPDTA X-RAY DIFFRACTION AUTHOR M.L.TONKIN,J.CRAWFORD,M.L.LEBRUN,M.J.BOULANGER REVDAT 3 20-DEC-23 4APM 1 REMARK LINK REVDAT 2 16-JAN-13 4APM 1 JRNL REVDAT 1 05-DEC-12 4APM 0 JRNL AUTH M.L.TONKIN,J.CRAWFORD,M.L.LEBRUN,M.J.BOULANGER JRNL TITL BABESIA DIVERGENS AND NEOSPORA CANINUM APICAL MEMBRANE JRNL TITL 2 ANTIGEN 1 (AMA1) STRUCTURES REVEAL SELECTIVITY AND JRNL TITL 3 PLASTICITY IN APICOMPLEXAN PARASITE HOST CELL INVASION. JRNL REF PROTEIN SCI. V. 22 114 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 23169033 JRNL DOI 10.1002/PRO.2193 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 18452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2736 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3694 ; 1.329 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 7.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;32.990 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;18.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.300 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2086 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4APM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290051984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Q8A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 300 MM CALCIUM ACETATE, REMARK 280 100 MM SODIUM CACODYLATE PH 5.5 AND 3% 2-METHYL-2,4-PENTANEDIOL REMARK 280 (MPD) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 ALA A 90 REMARK 465 MET A 91 REMARK 465 GLY A 92 REMARK 465 ALA A 173 REMARK 465 VAL A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 ASN A 181 REMARK 465 ALA A 182 REMARK 465 ARG A 183 REMARK 465 ASN A 184 REMARK 465 ARG A 185 REMARK 465 ALA A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 GLU A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 GLU A 192 REMARK 465 ILE A 193 REMARK 465 GLY A 258 REMARK 465 SER A 259 REMARK 465 ARG A 260 REMARK 465 TYR A 261 REMARK 465 CYS A 262 REMARK 465 ASP A 263 REMARK 465 ASN A 264 REMARK 465 ASP A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 GLN A 268 REMARK 465 ASP A 269 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 ILE A 353 REMARK 465 ASP A 354 REMARK 465 GLU A 355 REMARK 465 GLU A 356 REMARK 465 ALA A 357 REMARK 465 ASP A 358 REMARK 465 ASN A 359 REMARK 465 PHE A 360 REMARK 465 ASP A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 LYS A 364 REMARK 465 THR A 365 REMARK 465 LEU A 366 REMARK 465 SER A 367 REMARK 465 ASP A 368 REMARK 465 GLY A 369 REMARK 465 LEU A 370 REMARK 465 ARG A 371 REMARK 465 ASN A 372 REMARK 465 ILE A 373 REMARK 465 LYS A 374 REMARK 465 ALA A 375 REMARK 465 SER A 376 REMARK 465 LYS A 377 REMARK 465 ILE A 378 REMARK 465 ALA A 379 REMARK 465 GLN A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 PHE A 383 REMARK 465 SER A 384 REMARK 465 PRO A 385 REMARK 465 ILE A 386 REMARK 465 ALA A 387 REMARK 465 LYS A 388 REMARK 465 ALA A 389 REMARK 465 GLY A 390 REMARK 465 THR A 391 REMARK 465 ARG A 465 REMARK 465 ASN A 466 REMARK 465 THR A 467 REMARK 465 THR A 468 REMARK 465 PRO A 469 REMARK 465 ALA A 511 REMARK 465 PHE A 512 REMARK 465 TRP A 513 REMARK 465 ARG A 514 REMARK 465 ASN A 515 REMARK 465 LEU A 516 REMARK 465 ASP A 517 REMARK 465 ALA A 518 REMARK 465 ALA A 519 REMARK 465 ALA A 520 REMARK 465 LEU A 521 REMARK 465 VAL A 522 REMARK 465 PRO A 523 REMARK 465 ARG A 524 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 116 -59.01 -120.45 REMARK 500 GLN A 254 -30.61 -138.14 REMARK 500 SER A 273 -158.47 -82.00 REMARK 500 ASP A 426 112.12 -167.06 REMARK 500 PRO A 458 172.02 -55.30 REMARK 500 LYS A 486 -126.77 -146.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2162 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A2163 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH A2164 DISTANCE = 9.07 ANGSTROMS REMARK 525 HOH A2165 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A2166 DISTANCE = 9.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 207 O REMARK 620 2 ASP A 209 OD1 74.3 REMARK 620 3 ASP A 209 OD2 87.8 52.8 REMARK 620 4 ARG A 334 O 99.5 124.9 72.5 REMARK 620 5 HOH A2051 O 85.1 73.8 126.0 161.4 REMARK 620 6 HOH A2052 O 90.2 148.1 156.2 84.5 77.4 REMARK 620 7 HOH A2056 O 167.9 93.6 85.3 87.9 90.8 100.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1519 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1520 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1521 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4APL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMA1 FROM NEOSPORA CANINUM DBREF 4APM A 93 517 UNP C0IR59 C0IR59_BABDI 93 517 SEQADV 4APM GLY A 88 UNP C0IR59 EXPRESSION TAG SEQADV 4APM SER A 89 UNP C0IR59 EXPRESSION TAG SEQADV 4APM ALA A 90 UNP C0IR59 EXPRESSION TAG SEQADV 4APM MET A 91 UNP C0IR59 EXPRESSION TAG SEQADV 4APM GLY A 92 UNP C0IR59 EXPRESSION TAG SEQADV 4APM ALA A 518 UNP C0IR59 EXPRESSION TAG SEQADV 4APM ALA A 519 UNP C0IR59 EXPRESSION TAG SEQADV 4APM ALA A 520 UNP C0IR59 EXPRESSION TAG SEQADV 4APM LEU A 521 UNP C0IR59 EXPRESSION TAG SEQADV 4APM VAL A 522 UNP C0IR59 EXPRESSION TAG SEQADV 4APM PRO A 523 UNP C0IR59 EXPRESSION TAG SEQADV 4APM ARG A 524 UNP C0IR59 EXPRESSION TAG SEQRES 1 A 437 GLY SER ALA MET GLY SER THR PRO LYS ASP ILE TRP GLY SEQRES 2 A 437 ARG TYR MET ALA LYS PHE ASP LEU ALA LYS SER HIS GLY SEQRES 3 A 437 SER GLY ILE TYR VAL ASP LEU GLY GLY THR GLU ARG VAL SEQRES 4 A 437 GLY ALA THR GLN HIS ARG MET PRO THR GLY LYS CYS PRO SEQRES 5 A 437 VAL MET GLY LYS VAL ILE ASN LEU GLY ASN ASN ALA ASP SEQRES 6 A 437 PHE LEU ASN ARG ILE SER ALA GLU ASN PRO GLN ASP ARG SEQRES 7 A 437 GLY LEU ALA PHE PRO ASP THR ALA VAL ALA VAL THR ARG SEQRES 8 A 437 ASN SER ASN ALA ARG ASN ARG ALA ALA ALA GLU LYS THR SEQRES 9 A 437 GLU ILE ILE LEU SER PRO VAL SER ALA ALA ASP LEU VAL SEQRES 10 A 437 ARG TRP GLY TYR ASP GLY ASN ASP VAL ALA ASN CYS ALA SEQRES 11 A 437 GLU TYR ALA GLY ASN ILE ILE PRO ALA SER ASP THR ALA SEQRES 12 A 437 THR LYS TYR ARG TYR PRO PHE VAL TYR ASP ALA LYS GLU SEQRES 13 A 437 GLU MET CYS HIS ILE LEU PHE THR PRO MET GLN TYR ASN SEQRES 14 A 437 ARG GLY SER ARG TYR CYS ASP ASN ASP GLY SER GLN ASP SEQRES 15 A 437 GLU GLY THR SER SER LEU LEU CYS MET GLU PRO MET LYS SEQRES 16 A 437 SER GLY ILE ASP ALA HIS LEU TYR TYR GLY SER SER ARG SEQRES 17 A 437 VAL ASP LYS LYS TRP GLU GLU ASN CYS PRO MET TYR PRO SEQRES 18 A 437 VAL LYS ASP ALA ILE PHE GLY ARG GLY ALA ASN GLY SER SEQRES 19 A 437 CYS VAL ALA ILE GLU SER ALA PHE GLU GLU PHE THR ARG SEQRES 20 A 437 ASP ALA GLU GLU CYS SER ALA LEU MET PHE GLU ASN ALA SEQRES 21 A 437 ALA ALA ASP LEU GLU ILE ASP GLU GLU ALA ASP ASN PHE SEQRES 22 A 437 ASP GLU LEU LYS THR LEU SER ASP GLY LEU ARG ASN ILE SEQRES 23 A 437 LYS ALA SER LYS ILE ALA GLN ALA LEU PHE SER PRO ILE SEQRES 24 A 437 ALA LYS ALA GLY THR SER ALA LYS ASN SER LYS GLY VAL SEQRES 25 A 437 GLY MET ASN TRP ALA ASN TYR ASP SER ASN THR GLY LEU SEQRES 26 A 437 CYS ARG VAL ILE GLU GLU THR PRO ASN CYS LEU ILE ILE SEQRES 27 A 437 ASP ALA GLY SER PHE ALA MET THR ALA VAL GLY SER PRO SEQRES 28 A 437 LEU GLU GLN ASP ALA VAL PRO PHE PRO CYS ASP ILE VAL SEQRES 29 A 437 THR ASN GLY TYR ILE GLU PRO ARG PRO ARG SER ARG HIS SEQRES 30 A 437 ARG ASN THR THR PRO ILE PHE GLU VAL THR THR ALA LEU SEQRES 31 A 437 SER ARG GLU ALA LEU LYS CYS SER LYS TYR VAL HIS GLU SEQRES 32 A 437 LYS TYR SER GLU SER CYS GLY THR TYR TYR TYR CYS SER SEQRES 33 A 437 GLU GLU LYS PRO SER SER TRP ALA PHE TRP ARG ASN LEU SEQRES 34 A 437 ASP ALA ALA ALA LEU VAL PRO ARG HET CA A1511 1 HET ACT A1512 4 HET ACT A1513 4 HET ACT A1514 4 HET GOL A1515 6 HET GOL A1516 6 HET GOL A1517 6 HET GOL A1518 6 HET GOL A1519 6 HET GOL A1520 6 HET MPD A1521 8 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 12 MPD C6 H14 O2 FORMUL 13 HOH *166(H2 O) HELIX 1 1 THR A 94 ALA A 104 1 11 HELIX 2 2 ASP A 107 HIS A 112 1 6 HELIX 3 3 ASN A 161 ARG A 165 5 5 HELIX 4 4 ALA A 200 TRP A 206 1 7 HELIX 5 5 ASN A 211 ASN A 222 1 12 HELIX 6 6 LYS A 299 CYS A 304 1 6 HELIX 7 7 ASP A 335 GLU A 345 1 11 HELIX 8 8 LEU A 439 ALA A 443 5 5 SHEET 1 AA 2 GLY A 122 VAL A 126 0 SHEET 2 AA 2 THR A 129 MET A 133 -1 O THR A 129 N VAL A 126 SHEET 1 AB 5 VAL A 140 MET A 141 0 SHEET 2 AB 5 LEU A 289 GLY A 292 -1 O TYR A 291 N VAL A 140 SHEET 3 AB 5 PHE A 237 ASP A 240 -1 O PHE A 237 N GLY A 292 SHEET 4 AB 5 MET A 245 ILE A 248 -1 O MET A 245 N ASP A 240 SHEET 5 AB 5 VAL A 198 SER A 199 -1 O VAL A 198 N CYS A 246 SHEET 1 AC 2 LYS A 143 LEU A 147 0 SHEET 2 AC 2 MET A 278 LYS A 282 -1 O GLU A 279 N ASN A 146 SHEET 1 AD10 PHE A 329 PHE A 332 0 SHEET 2 AD10 LEU A 412 ILE A 416 -1 O CYS A 413 N GLU A 331 SHEET 3 AD10 TRP A 403 ASP A 407 -1 O TRP A 403 N ILE A 416 SHEET 4 AD10 CYS A 422 THR A 433 -1 O PHE A 430 N TYR A 406 SHEET 5 AD10 VAL A 309 ALA A 318 -1 O VAL A 309 N ALA A 431 SHEET 6 AD10 SER A 321 ALA A 324 -1 O SER A 321 N ALA A 318 SHEET 7 AD10 GLY A 454 TYR A 455 1 O TYR A 455 N ALA A 324 SHEET 8 AD10 THR A 474 ALA A 476 -1 O THR A 475 N GLY A 454 SHEET 9 AD10 GLY A 497 SER A 503 -1 O TYR A 500 N ALA A 476 SHEET 10 AD10 TYR A 487 SER A 493 -1 O TYR A 487 N SER A 503 SSBOND 1 CYS A 138 CYS A 304 1555 1555 2.07 SSBOND 2 CYS A 216 CYS A 246 1555 1555 2.08 SSBOND 3 CYS A 322 CYS A 422 1555 1555 2.07 SSBOND 4 CYS A 339 CYS A 413 1555 1555 2.11 SSBOND 5 CYS A 448 CYS A 496 1555 1555 2.04 SSBOND 6 CYS A 484 CYS A 502 1555 1555 2.06 LINK O GLY A 207 CA CA A1511 1555 1555 2.40 LINK OD1 ASP A 209 CA CA A1511 1555 1555 2.48 LINK OD2 ASP A 209 CA CA A1511 1555 1555 2.40 LINK O ARG A 334 CA CA A1511 1554 1555 2.34 LINK CA CA A1511 O HOH A2051 1555 1555 2.52 LINK CA CA A1511 O HOH A2052 1555 1555 2.47 LINK CA CA A1511 O HOH A2056 1555 1555 2.36 CISPEP 1 SER A 196 PRO A 197 0 -7.53 SITE 1 AC1 6 GLY A 207 ASP A 209 ARG A 334 HOH A2051 SITE 2 AC1 6 HOH A2052 HOH A2056 SITE 1 AC2 4 ASP A 212 VAL A 213 TYR A 239 TRP A 300 SITE 1 AC3 4 ASP A 426 LYS A 491 TYR A 499 HOH A2135 SITE 1 AC4 3 MET A 141 ALA A 287 ASP A 442 SITE 1 AC5 3 HIS A 131 THR A 251 HOH A2161 SITE 1 AC6 4 ARG A 479 GLU A 480 LEU A 482 CYS A 484 SITE 1 AC7 4 TRP A 206 ASP A 335 GLU A 337 GLU A 338 SITE 1 AC8 4 LYS A 110 SER A 199 ASP A 202 ARG A 205 SITE 1 AC9 3 CYS A 496 THR A 498 HOH A2158 SITE 1 BC1 6 ILE A 145 ASN A 146 LEU A 147 ALA A 151 SITE 2 BC1 6 ASP A 152 PHE A 153 SITE 1 BC2 4 GLU A 218 GLY A 221 ASN A 222 PHE A 332 CRYST1 67.820 139.180 45.010 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022217 0.00000