HEADER PROTEIN BINDING 30-APR-12 4ASC TITLE CRYSTAL STRUCTURE OF THE KELCH DOMAIN OF HUMAN KBTBD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KELCH DOMAIN, RESIDUES 314-616; COMPND 5 SYNONYM: KBTBD5, SARCOSYNAPSIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CYS 340 WAS OXIDISED IN THE CRYSTAL STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF; SOURCE 11 OTHER_DETAILS: MAMMALIAN GENE COLLECTION (MGC) KEYWDS PROTEIN BINDING, CYTOSKELETON, KELCH REPEAT EXPDTA X-RAY DIFFRACTION AUTHOR P.CANNING,V.AYINAMPUDI,T.KROJER,C.STRAIN-DAMERELL,J.RAYNOR,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.N.BULLOCK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 20-DEC-23 4ASC 1 REMARK LINK REVDAT 5 24-JAN-18 4ASC 1 JRNL REVDAT 4 27-MAR-13 4ASC 1 JRNL REVDAT 3 06-FEB-13 4ASC 1 AUTHOR JRNL REMARK REVDAT 2 30-MAY-12 4ASC 1 COMPND DBREF REVDAT 1 09-MAY-12 4ASC 0 JRNL AUTH P.CANNING,C.D.O.COOPER,T.KROJER,J.W.MURRAY,A.C.W.PIKE, JRNL AUTH 2 A.CHAIKUAD,T.KEATES,C.THANGARATNARAJAH,V.HOJZAN,B.D.MARSDEN, JRNL AUTH 3 O.GILEADI,S.KNAPP,F.VON DELFT,A.N.BULLOCK JRNL TITL STRUCTURAL BASIS FOR CUL3 ASSEMBLY WITH THE BTB-KELCH FAMILY JRNL TITL 2 OF E3 UBIQUITIN LIGASES. JRNL REF J.BIOL.CHEM. V. 288 7803 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23349464 JRNL DOI 10.1074/JBC.M112.437996 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1629 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3358 ; 1.661 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3983 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.134 ;24.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;13.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.679 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2769 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 610 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1520 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1183 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1151 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.364 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.295 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2465 ; 2.293 ; 2.065 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1629 ; 0.003 ; 2.100 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3353 ; 3.555 ; 3.048 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3983 ; 2.410 ; 3.151 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 821 ; 6.307 ; 6.288 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 393 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2495 -4.8657 -9.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0330 REMARK 3 T33: 0.0443 T12: -0.0036 REMARK 3 T13: 0.0003 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5583 L22: 1.2219 REMARK 3 L33: 0.2469 L12: 0.4073 REMARK 3 L13: -0.0696 L23: -0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0114 S13: 0.0191 REMARK 3 S21: 0.0468 S22: -0.0065 S23: 0.0587 REMARK 3 S31: -0.0135 S32: -0.0311 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 394 A 447 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9186 -16.9063 -20.9139 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0417 REMARK 3 T33: 0.0482 T12: -0.0038 REMARK 3 T13: -0.0134 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4946 L22: 0.6098 REMARK 3 L33: 0.2591 L12: -0.2927 REMARK 3 L13: 0.3302 L23: -0.1093 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0145 S13: -0.0648 REMARK 3 S21: -0.0184 S22: -0.0386 S23: 0.0903 REMARK 3 S31: 0.0074 S32: 0.0064 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3677 -23.4132 -18.0753 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0522 REMARK 3 T33: 0.0516 T12: -0.0163 REMARK 3 T13: -0.0050 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.4802 L22: 0.6613 REMARK 3 L33: 0.8771 L12: -0.9875 REMARK 3 L13: 1.1390 L23: -0.7588 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.0694 S13: -0.0107 REMARK 3 S21: -0.0382 S22: -0.0561 S23: 0.0029 REMARK 3 S31: 0.0559 S32: 0.0493 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 457 A 616 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3975 -12.0265 -8.7412 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0436 REMARK 3 T33: 0.0572 T12: -0.0130 REMARK 3 T13: -0.0066 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2809 L22: 0.1542 REMARK 3 L33: 0.3709 L12: -0.1391 REMARK 3 L13: 0.2222 L23: -0.0556 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0031 S13: 0.0064 REMARK 3 S21: -0.0014 S22: 0.0078 S23: -0.0396 REMARK 3 S31: -0.0155 S32: 0.0557 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 617 A 621 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3586 9.0725 -0.8465 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.1483 REMARK 3 T33: 0.1213 T12: -0.0056 REMARK 3 T13: 0.0438 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 2.2129 L22: 6.2778 REMARK 3 L33: 26.3958 L12: -3.6525 REMARK 3 L13: 3.3390 L23: -7.8138 REMARK 3 S TENSOR REMARK 3 S11: 0.1739 S12: -0.5536 S13: 0.2128 REMARK 3 S21: -0.2695 S22: 0.9017 S23: -0.1968 REMARK 3 S31: 0.3631 S32: -0.5997 S33: -1.0756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ASC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 39.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WOZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE PH 5.3, 20%(W/V) PEG REMARK 280 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 622 REMARK 465 GLU A 623 REMARK 465 ASN A 624 REMARK 465 LEU A 625 REMARK 465 TYR A 626 REMARK 465 PHE A 627 REMARK 465 GLN A 628 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 357 CD CE NZ REMARK 470 GLU A 371 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLU A 375 CG CD OE1 OE2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 ASP A 424 CG OD1 OD2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 474 CZ NH1 NH2 REMARK 470 LYS A 486 NZ REMARK 470 GLU A 589 CG CD OE1 OE2 REMARK 470 LYS A 592 CD CE NZ REMARK 470 ARG A 598 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2151 O HOH A 2152 2.10 REMARK 500 O HOH A 2070 O HOH A 2094 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 387 CG HIS A 387 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 400 114.29 -164.94 REMARK 500 LEU A 411 -125.16 53.03 REMARK 500 LYS A 423 -133.59 -94.43 REMARK 500 ALA A 516 -161.14 68.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 371 ASP A 372 -140.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2069 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1623 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SER 345 TO ASN IS DOCUMENTED A NATURAL VARIANT DBREF 4ASC A 314 621 UNP Q2TBA0 KBTB5_HUMAN 314 621 SEQADV 4ASC SER A 345 UNP Q2TBA0 ASN 345 VARIANT SEQADV 4ASC ARG A 617 UNP Q2TBA0 CYS 617 VARIANT SEQADV 4ASC ALA A 622 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC GLU A 623 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC ASN A 624 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC LEU A 625 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC TYR A 626 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC PHE A 627 UNP Q2TBA0 EXPRESSION TAG SEQADV 4ASC GLN A 628 UNP Q2TBA0 EXPRESSION TAG SEQRES 1 A 315 MET PHE LEU GLN ASP LEU ILE PHE MET ILE SER GLU GLU SEQRES 2 A 315 GLY ALA VAL ALA TYR ASP PRO ALA ALA ASN GLU CYS TYR SEQRES 3 A 315 CSO ALA SER LEU SER SER GLN VAL PRO LYS ASN HIS VAL SEQRES 4 A 315 SER LEU VAL THR LYS GLU ASN GLN VAL PHE VAL ALA GLY SEQRES 5 A 315 GLY LEU PHE TYR ASN GLU ASP ASN LYS GLU ASP PRO MET SEQRES 6 A 315 SER ALA TYR PHE LEU GLN PHE ASP HIS LEU ASP SER GLU SEQRES 7 A 315 TRP LEU GLY MET PRO PRO LEU PRO SER PRO ARG CYS LEU SEQRES 8 A 315 PHE GLY LEU GLY GLU ALA LEU ASN SER ILE TYR VAL VAL SEQRES 9 A 315 GLY GLY ARG GLU ILE LYS ASP GLY GLU ARG CYS LEU ASP SEQRES 10 A 315 SER VAL MET CYS TYR ASP ARG LEU SER PHE LYS TRP GLY SEQRES 11 A 315 GLU SER ASP PRO LEU PRO TYR VAL VAL TYR GLY HIS THR SEQRES 12 A 315 VAL LEU SER HIS MET ASP LEU VAL TYR VAL ILE GLY GLY SEQRES 13 A 315 LYS GLY SER ASP ARG LYS CYS LEU ASN LYS MET CYS VAL SEQRES 14 A 315 TYR ASP PRO LYS LYS PHE GLU TRP LYS GLU LEU ALA PRO SEQRES 15 A 315 MET GLN THR ALA ARG SER LEU PHE GLY ALA THR VAL HIS SEQRES 16 A 315 ASP GLY ARG ILE ILE VAL ALA ALA GLY VAL THR ASP THR SEQRES 17 A 315 GLY LEU THR SER SER ALA GLU VAL TYR SER ILE THR ASP SEQRES 18 A 315 ASN LYS TRP ALA PRO PHE GLU ALA PHE PRO GLN GLU ARG SEQRES 19 A 315 SER SER LEU SER LEU VAL SER LEU VAL GLY THR LEU TYR SEQRES 20 A 315 ALA ILE GLY GLY PHE ALA THR LEU GLU THR GLU SER GLY SEQRES 21 A 315 GLU LEU VAL PRO THR GLU LEU ASN ASP ILE TRP ARG TYR SEQRES 22 A 315 ASN GLU GLU GLU LYS LYS TRP GLU GLY VAL LEU ARG GLU SEQRES 23 A 315 ILE ALA TYR ALA ALA GLY ALA THR PHE LEU PRO VAL ARG SEQRES 24 A 315 LEU ASN VAL LEU ARG LEU THR LYS MET ALA GLU ASN LEU SEQRES 25 A 315 TYR PHE GLN MODRES 4ASC CSO A 340 CYS S-HYDROXYCYSTEINE HET CSO A 340 7 HET EDO A1622 4 HET EDO A1623 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *227(H2 O) HELIX 1 1 ASN A 614 LEU A 618 5 5 SHEET 1 AA 5 THR A 607 LEU A 613 0 SHEET 2 AA 5 GLN A 317 SER A 324 -1 O GLN A 317 N LEU A 613 SHEET 3 AA 5 GLY A 327 ASP A 332 -1 O GLY A 327 N SER A 324 SHEET 4 AA 5 GLU A 337 SER A 342 -1 O GLU A 337 N ASP A 332 SHEET 5 AA 5 THR A 619 LYS A 620 -1 O THR A 619 N CSO A 340 SHEET 1 AB 4 HIS A 351 VAL A 355 0 SHEET 2 AB 4 VAL A 361 TYR A 369 -1 O PHE A 362 N LEU A 354 SHEET 3 AB 4 MET A 378 ASP A 386 -1 O SER A 379 N PHE A 368 SHEET 4 AB 4 GLU A 391 GLY A 394 -1 O GLU A 391 N ASP A 386 SHEET 1 AC 2 ARG A 402 CYS A 403 0 SHEET 2 AC 2 ARG A 420 GLU A 421 -1 O ARG A 420 N CYS A 403 SHEET 1 AD 4 GLY A 406 ALA A 410 0 SHEET 2 AD 4 SER A 413 VAL A 417 -1 O SER A 413 N ALA A 410 SHEET 3 AD 4 VAL A 432 ASP A 436 -1 O MET A 433 N VAL A 416 SHEET 4 AD 4 LYS A 441 GLU A 444 -1 O LYS A 441 N ASP A 436 SHEET 1 AE 4 THR A 456 HIS A 460 0 SHEET 2 AE 4 LEU A 463 ILE A 467 -1 O LEU A 463 N HIS A 460 SHEET 3 AE 4 MET A 480 ASP A 484 -1 O CYS A 481 N VAL A 466 SHEET 4 AE 4 GLU A 489 GLU A 492 -1 O GLU A 489 N ASP A 484 SHEET 1 AF 4 GLY A 504 HIS A 508 0 SHEET 2 AF 4 ARG A 511 VAL A 518 -1 O ARG A 511 N HIS A 508 SHEET 3 AF 4 LEU A 523 SER A 531 -1 N THR A 524 O GLY A 517 SHEET 4 AF 4 LYS A 536 PHE A 540 -1 O LYS A 536 N SER A 531 SHEET 1 AG 4 SER A 551 LEU A 555 0 SHEET 2 AG 4 THR A 558 GLU A 569 -1 O THR A 558 N LEU A 555 SHEET 3 AG 4 LEU A 575 ASN A 587 -1 O VAL A 576 N LEU A 568 SHEET 4 AG 4 LYS A 592 LEU A 597 -1 O LYS A 592 N ASN A 587 LINK C TYR A 339 N CSO A 340 1555 1555 1.33 LINK C CSO A 340 N ALA A 341 1555 1555 1.32 SITE 1 AC1 5 GLN A 346 TYR A 381 GLU A 546 HOH A2048 SITE 2 AC1 5 HOH A2226 SITE 1 AC2 6 ASN A 412 ARG A 427 CYS A 428 ARG A 437 SITE 2 AC2 6 VAL A 451 SER A 472 CRYST1 61.330 64.950 89.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011211 0.00000