HEADER DNA-BINDING PROTEIN/DNA 08-MAY-12 4ATI TITLE MITF:M-BOX COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 180-296; COMPND 5 SYNONYM: MITF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*TP*TP*AP*GP*CP*AP*CP*AP*TP*GP*AP*CP*CP*CP*T)-3'; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: E-BOX SEQUENCE; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*AP*GP*GP*GP*TP*CP*AP*TP*GP*TP*GP*CP*TP*AP*AP*C)-3'; COMPND 14 CHAIN: D; COMPND 15 SYNONYM: E-BOX SEQUENCE; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090 KEYWDS DNA-BINDING PROTEIN-DNA COMPLEX, MELANOMA EXPDTA X-RAY DIFFRACTION AUTHOR V.POGENBERG,V.DEINEKO,M.WILMANNS REVDAT 3 20-DEC-23 4ATI 1 REMARK REVDAT 2 19-DEC-12 4ATI 1 JRNL REVDAT 1 12-DEC-12 4ATI 0 JRNL AUTH V.POGENBERG,M.HOGMUNDSDOTTIR,K.BERGSTEINSDOTTIR,A.SCHEPSKY, JRNL AUTH 2 B.PHUNG,V.DEINEKO,M.MILEWSKI,E.STEINGRIMSSON,M.WILMANNS JRNL TITL RESTRICTED LEUCINE ZIPPER DIMERIZATION AND SPECIFICITY OF JRNL TITL 2 DNA RECOGNITION OF THE MELANOCYTE MASTER REGULATOR MITF JRNL REF GENES DEV. V. 26 2647 2012 JRNL REFN ISSN 0890-9369 JRNL PMID 23207919 JRNL DOI 10.1101/GAD.198192.112 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 15081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.3938 - 4.4039 0.84 2643 137 0.1794 0.2396 REMARK 3 2 4.4039 - 3.5163 0.95 2988 134 0.1847 0.2074 REMARK 3 3 3.5163 - 3.0780 0.95 2929 155 0.2342 0.2838 REMARK 3 4 3.0780 - 2.7994 0.94 2928 157 0.3886 0.4422 REMARK 3 5 2.7994 - 2.6003 0.92 2811 168 0.5679 0.6140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 83.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.27070 REMARK 3 B22 (A**2) : -23.88870 REMARK 3 B33 (A**2) : 12.61800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.61110 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4990 REMARK 3 OPERATOR: -H-2L, -K, L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1801 REMARK 3 ANGLE : 1.361 2548 REMARK 3 CHIRALITY : 0.073 281 REMARK 3 PLANARITY : 0.007 217 REMARK 3 DIHEDRAL : 23.465 750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 20.6636 -19.1392 18.8272 REMARK 3 T TENSOR REMARK 3 T11: 0.6966 T22: 0.5947 REMARK 3 T33: 0.9154 T12: 0.1246 REMARK 3 T13: -0.4699 T23: -0.1564 REMARK 3 L TENSOR REMARK 3 L11: 2.5614 L22: 6.3161 REMARK 3 L33: 1.8664 L12: 0.3147 REMARK 3 L13: -0.4602 L23: -0.4652 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: -0.4390 S13: -0.1196 REMARK 3 S21: 0.5449 S22: 0.1131 S23: -1.5309 REMARK 3 S31: -0.0079 S32: 0.5379 S33: -0.0331 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 20.1371 -19.7119 21.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.5786 T22: 0.7567 REMARK 3 T33: 0.9335 T12: 0.0133 REMARK 3 T13: -0.4378 T23: -0.2187 REMARK 3 L TENSOR REMARK 3 L11: 3.7832 L22: 6.6668 REMARK 3 L33: 5.7675 L12: -0.0483 REMARK 3 L13: -0.6086 L23: -1.6817 REMARK 3 S TENSOR REMARK 3 S11: 0.5038 S12: -0.3055 S13: -0.4216 REMARK 3 S21: 0.7042 S22: -0.2993 S23: -1.6941 REMARK 3 S31: 0.5601 S32: 0.7433 S33: -0.2533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 209:242) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4925 -20.7270 21.4517 REMARK 3 T TENSOR REMARK 3 T11: 0.4335 T22: 0.6691 REMARK 3 T33: 0.1100 T12: -0.0379 REMARK 3 T13: -0.0056 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 4.4605 L22: 7.4478 REMARK 3 L33: 2.3740 L12: 3.1124 REMARK 3 L13: 0.4680 L23: 0.6941 REMARK 3 S TENSOR REMARK 3 S11: 0.6517 S12: -0.1887 S13: -0.0297 REMARK 3 S21: 1.2690 S22: -0.0614 S23: -0.2610 REMARK 3 S31: 0.5255 S32: -0.1022 S33: -0.4524 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 243:269) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1124 -22.0492 5.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.3391 T22: 0.7654 REMARK 3 T33: 0.2130 T12: 0.0632 REMARK 3 T13: 0.0489 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 1.6502 REMARK 3 L33: 2.8695 L12: -0.1430 REMARK 3 L13: -0.0856 L23: 0.1802 REMARK 3 S TENSOR REMARK 3 S11: 0.4996 S12: 0.2977 S13: 0.1164 REMARK 3 S21: -0.6220 S22: -0.3415 S23: 0.1645 REMARK 3 S31: 0.5423 S32: -0.7411 S33: -0.1041 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 203:229) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6208 -23.8931 10.2746 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.6534 REMARK 3 T33: 0.5090 T12: -0.0058 REMARK 3 T13: 0.0008 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.5714 L22: 4.4382 REMARK 3 L33: 1.4916 L12: -0.9874 REMARK 3 L13: -1.9203 L23: 1.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.1661 S12: -0.2606 S13: 0.4385 REMARK 3 S21: -0.2274 S22: 0.2131 S23: -1.3696 REMARK 3 S31: 0.2531 S32: 0.0895 S33: -0.2624 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 230:242) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1760 -5.9554 9.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.5198 T22: 0.7029 REMARK 3 T33: 0.2134 T12: 0.0872 REMARK 3 T13: 0.0772 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 6.0947 L22: 1.5992 REMARK 3 L33: 3.2274 L12: -1.8063 REMARK 3 L13: 3.0256 L23: 0.4380 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: -0.2902 S13: 0.7112 REMARK 3 S21: 0.1113 S22: -0.2491 S23: 0.0236 REMARK 3 S31: -0.7472 S32: -0.6257 S33: 0.1321 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 243:274) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9217 -18.0467 10.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.8054 REMARK 3 T33: 0.1500 T12: -0.0759 REMARK 3 T13: 0.0323 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.4666 L22: 1.3923 REMARK 3 L33: 0.6009 L12: 0.4336 REMARK 3 L13: 0.9354 L23: 0.2748 REMARK 3 S TENSOR REMARK 3 S11: 0.3074 S12: 0.3520 S13: 0.2092 REMARK 3 S21: -0.0295 S22: -0.1706 S23: 0.3675 REMARK 3 S31: 0.1381 S32: -0.1697 S33: -0.0327 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ATI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290050718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9535 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ATH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.49500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.49500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 179 REMARK 465 ASN A 180 REMARK 465 ILE A 181 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 LEU A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 CYS A 188 REMARK 465 ILE A 189 REMARK 465 PHE A 190 REMARK 465 PRO A 191 REMARK 465 THR A 192 REMARK 465 GLU A 193 REMARK 465 SER A 194 REMARK 465 GLU A 195 REMARK 465 ALA A 196 REMARK 465 ARG A 197 REMARK 465 ALA A 198 REMARK 465 LEU A 199 REMARK 465 ALA A 200 REMARK 465 LYS A 201 REMARK 465 GLU A 202 REMARK 465 ARG A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 ASP A 207 REMARK 465 ASN A 208 REMARK 465 ASN A 235 REMARK 465 ASP A 236 REMARK 465 PRO A 237 REMARK 465 ASP A 238 REMARK 465 ARG A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 LYS A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 ALA A 277 REMARK 465 ASN A 278 REMARK 465 ARG A 279 REMARK 465 HIS A 280 REMARK 465 LEU A 281 REMARK 465 LEU A 282 REMARK 465 LEU A 283 REMARK 465 ARG A 284 REMARK 465 VAL A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 MET A 290 REMARK 465 GLN A 291 REMARK 465 ALA A 292 REMARK 465 ARG A 293 REMARK 465 ALA A 294 REMARK 465 HIS A 295 REMARK 465 GLY A 296 REMARK 465 ALA B 179 REMARK 465 ASN B 180 REMARK 465 ILE B 181 REMARK 465 LYS B 182 REMARK 465 ARG B 183 REMARK 465 GLU B 184 REMARK 465 LEU B 185 REMARK 465 THR B 186 REMARK 465 ALA B 187 REMARK 465 CYS B 188 REMARK 465 ILE B 189 REMARK 465 PHE B 190 REMARK 465 PRO B 191 REMARK 465 THR B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 ARG B 197 REMARK 465 ALA B 198 REMARK 465 LEU B 199 REMARK 465 ALA B 200 REMARK 465 LYS B 201 REMARK 465 GLU B 202 REMARK 465 ASN B 235 REMARK 465 GLU B 275 REMARK 465 HIS B 276 REMARK 465 ALA B 277 REMARK 465 ASN B 278 REMARK 465 ARG B 279 REMARK 465 HIS B 280 REMARK 465 LEU B 281 REMARK 465 LEU B 282 REMARK 465 LEU B 283 REMARK 465 ARG B 284 REMARK 465 VAL B 285 REMARK 465 GLN B 286 REMARK 465 GLU B 287 REMARK 465 LEU B 288 REMARK 465 GLU B 289 REMARK 465 MET B 290 REMARK 465 GLN B 291 REMARK 465 ALA B 292 REMARK 465 ARG B 293 REMARK 465 ALA B 294 REMARK 465 HIS B 295 REMARK 465 GLY B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 265 CE NZ REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 ASN A 269 CG OD1 ND2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 SER B 234 OG REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 216 OP2 DC C 6 1.89 REMARK 500 NH1 ARG A 255 OE2 GLU B 226 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DA D 1 O2 DC D 16 4556 1.79 REMARK 500 NH2 ARG A 263 OD1 ASN B 219 2555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ATH RELATED DB: PDB REMARK 900 MITF APO STRUCTURE REMARK 900 RELATED ID: 4ATK RELATED DB: PDB REMARK 900 MITF:E-BOX COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 ISOFORM A2 DBREF 4ATI A 180 296 UNP Q08874 MITF_MOUSE 180 296 DBREF 4ATI B 180 296 UNP Q08874 MITF_MOUSE 180 296 DBREF 4ATI C 1 16 PDB 4ATI 4ATI 1 16 DBREF 4ATI D 1 16 PDB 4ATI 4ATI 1 16 SEQADV 4ATI ALA A 179 UNP Q08874 EXPRESSION TAG SEQADV 4ATI ALA B 179 UNP Q08874 EXPRESSION TAG SEQRES 1 A 118 ALA ASN ILE LYS ARG GLU LEU THR ALA CYS ILE PHE PRO SEQRES 2 A 118 THR GLU SER GLU ALA ARG ALA LEU ALA LYS GLU ARG GLN SEQRES 3 A 118 LYS LYS ASP ASN HIS ASN LEU ILE GLU ARG ARG ARG ARG SEQRES 4 A 118 PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU GLY THR LEU SEQRES 5 A 118 ILE PRO LYS SER ASN ASP PRO ASP MET ARG TRP ASN LYS SEQRES 6 A 118 GLY THR ILE LEU LYS ALA SER VAL ASP TYR ILE ARG LYS SEQRES 7 A 118 LEU GLN ARG GLU GLN GLN ARG ALA LYS ASP LEU GLU ASN SEQRES 8 A 118 ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG HIS LEU LEU SEQRES 9 A 118 LEU ARG VAL GLN GLU LEU GLU MET GLN ALA ARG ALA HIS SEQRES 10 A 118 GLY SEQRES 1 B 118 ALA ASN ILE LYS ARG GLU LEU THR ALA CYS ILE PHE PRO SEQRES 2 B 118 THR GLU SER GLU ALA ARG ALA LEU ALA LYS GLU ARG GLN SEQRES 3 B 118 LYS LYS ASP ASN HIS ASN LEU ILE GLU ARG ARG ARG ARG SEQRES 4 B 118 PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU GLY THR LEU SEQRES 5 B 118 ILE PRO LYS SER ASN ASP PRO ASP MET ARG TRP ASN LYS SEQRES 6 B 118 GLY THR ILE LEU LYS ALA SER VAL ASP TYR ILE ARG LYS SEQRES 7 B 118 LEU GLN ARG GLU GLN GLN ARG ALA LYS ASP LEU GLU ASN SEQRES 8 B 118 ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG HIS LEU LEU SEQRES 9 B 118 LEU ARG VAL GLN GLU LEU GLU MET GLN ALA ARG ALA HIS SEQRES 10 B 118 GLY SEQRES 1 C 16 DG DT DT DA DG DC DA DC DA DT DG DA DC SEQRES 2 C 16 DC DC DT SEQRES 1 D 16 DA DG DG DG DT DC DA DT DG DT DG DC DT SEQRES 2 D 16 DA DA DC FORMUL 5 HOH *14(H2 O) HELIX 1 1 HIS A 209 ILE A 231 1 23 HELIX 2 2 ASN A 242 GLU A 268 1 27 HELIX 3 3 ARG B 203 ILE B 231 1 29 HELIX 4 4 ASN B 242 LEU B 274 1 33 CRYST1 118.990 104.260 44.900 90.00 112.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008404 0.000000 0.003421 0.00000 SCALE2 0.000000 0.009591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024046 0.00000