HEADER TRANSCRIPTION 22-MAY-12 4AUW TITLE CRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH THE C- TITLE 2 MARE BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR MAFB; COMPND 3 CHAIN: A, B, E, F; COMPND 4 FRAGMENT: RESIDUES 211-305; COMPND 5 SYNONYM: MAF-B, KREISLER, SEGMENTATION PROTEIN KR, TRANSCRIPTION COMPND 6 FACTOR MAF-1, V-MAF MUSCULOAPONEUROTIC FIBROSARCOMA ONCOGENE HOMOLOG COMPND 7 B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: C-MARE BINDING SITE (5'-D(*AP*TP*AP*AP*TP*GP*CP*TP* COMPND 12 GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*AP*TP*T)-3'); COMPND 13 CHAIN: C, H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: C-MARE BINDING SITE (5'-D(*AP*TP*AP*AP*TP*GP*CP*TP* COMPND 17 GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*AP*TP*T)-3'); COMPND 18 CHAIN: D, G; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION, DNA, MACROPHAGE EXPDTA X-RAY DIFFRACTION AUTHOR L.C.TEXTOR,S.HOLTON,M.WILMANNS REVDAT 2 02-MAY-18 4AUW 1 JRNL REMARK REVDAT 1 05-JUN-13 4AUW 0 JRNL AUTH L.C.TEXTOR,M.WILMANNS,S.J.HOLTON JRNL TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY JRNL TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE MOUSE TRANSCRIPTION FACTOR JRNL TITL 3 MAFB IN COMPLEX WITH ITS DNA-RECOGNITION MOTIF CMARE JRNL REF ACTA CRYSTALLOGR SECT F V. 63 657 2007 JRNL REF 2 STRUCT BIOL CRYST COMMUN. JRNL REFN JRNL PMID 17671361 JRNL DOI 10.1107/S1744309107031260 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4920 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 1710 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.690 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4891 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6909 ; 1.147 ; 2.404 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 4.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;37.628 ;23.136 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;17.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 759 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3094 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4AUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9535 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.05550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.48200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.08325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.48200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.02775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.48200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.48200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.08325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.48200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.48200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.02775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 210 REMARK 465 PHE A 211 REMARK 465 LYS A 300 REMARK 465 LEU A 301 REMARK 465 ALA A 302 REMARK 465 ASN A 303 REMARK 465 SER A 304 REMARK 465 GLY A 305 REMARK 465 MET B 210 REMARK 465 PHE B 211 REMARK 465 SER B 212 REMARK 465 GLU B 299 REMARK 465 LYS B 300 REMARK 465 LEU B 301 REMARK 465 ALA B 302 REMARK 465 ASN B 303 REMARK 465 SER B 304 REMARK 465 GLY B 305 REMARK 465 LEU E 301 REMARK 465 ALA E 302 REMARK 465 ASN E 303 REMARK 465 SER E 304 REMARK 465 GLY E 305 REMARK 465 LYS F 300 REMARK 465 LEU F 301 REMARK 465 ALA F 302 REMARK 465 ASN F 303 REMARK 465 SER F 304 REMARK 465 GLY F 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 212 OG REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 299 CA C O CB CG CD OE1 REMARK 470 GLU A 299 OE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 SER B 298 CA C O CB OG REMARK 470 PHE E 211 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG E 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 295 CG CD CE NZ REMARK 470 VAL E 296 CG1 CG2 REMARK 470 LYS E 297 CG CD CE NZ REMARK 470 LYS E 300 CA C O CB CG CD CE REMARK 470 LYS E 300 NZ REMARK 470 PHE F 211 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU F 299 CA C O CB CG CD OE1 REMARK 470 GLU F 299 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER E 254 O2 DTU B 1299 2.10 REMARK 500 O VAL B 221 OD1 ASN B 225 2.10 REMARK 500 O ARG E 222 ND2 ASN E 225 2.12 REMARK 500 NH1 ARG A 243 OP2 DT D 5 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 11 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 1 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT D 2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 21 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA G 1 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DA G 1 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT G 2 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC G 14 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG G 16 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC G 17 O4' - C1' - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT G 21 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 298 -83.18 -70.26 REMARK 500 LYS B 297 -150.48 -97.52 REMARK 500 PHE E 211 -160.71 113.78 REMARK 500 PHE F 211 179.31 90.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1299 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 O REMARK 620 2 CYS A 255 SG 72.8 REMARK 620 3 DT D 8 OP2 103.6 77.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B1298 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT C 8 OP2 REMARK 620 2 CYS B 255 O 107.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG E1300 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 255 O REMARK 620 2 DT G 8 OP2 103.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG F 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG E 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU B 1299 DBREF 4AUW A 211 305 UNP P54841 MAFB_MOUSE 211 305 DBREF 4AUW B 211 305 UNP P54841 MAFB_MOUSE 211 305 DBREF 4AUW C 1 21 PDB 4AUW 4AUW 1 21 DBREF 4AUW D 1 21 PDB 4AUW 4AUW 1 21 DBREF 4AUW E 211 305 UNP P54841 MAFB_MOUSE 211 305 DBREF 4AUW F 211 305 UNP P54841 MAFB_MOUSE 211 305 DBREF 4AUW G 1 21 PDB 4AUW 4AUW 1 21 DBREF 4AUW H 1 21 PDB 4AUW 4AUW 1 21 SEQADV 4AUW MET A 210 UNP P54841 EXPRESSION TAG SEQADV 4AUW SER A 298 UNP P54841 CYS 298 ENGINEERED MUTATION SEQADV 4AUW MET B 210 UNP P54841 EXPRESSION TAG SEQADV 4AUW SER B 298 UNP P54841 CYS 298 ENGINEERED MUTATION SEQADV 4AUW MET E 210 UNP P54841 EXPRESSION TAG SEQADV 4AUW SER E 298 UNP P54841 CYS 298 ENGINEERED MUTATION SEQADV 4AUW MET F 210 UNP P54841 EXPRESSION TAG SEQADV 4AUW SER F 298 UNP P54841 CYS 298 ENGINEERED MUTATION SEQRES 1 A 96 MET PHE SER ASP ASP GLN LEU VAL SER MET SER VAL ARG SEQRES 2 A 96 GLU LEU ASN ARG HIS LEU ARG GLY PHE THR LYS ASP GLU SEQRES 3 A 96 VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU LYS ASN SEQRES 4 A 96 ARG GLY TYR ALA GLN SER CYS ARG TYR LYS ARG VAL GLN SEQRES 5 A 96 GLN LYS HIS HIS LEU GLU ASN GLU LYS THR GLN LEU ILE SEQRES 6 A 96 GLN GLN VAL GLU GLN LEU LYS GLN GLU VAL SER ARG LEU SEQRES 7 A 96 ALA ARG GLU ARG ASP ALA TYR LYS VAL LYS SER GLU LYS SEQRES 8 A 96 LEU ALA ASN SER GLY SEQRES 1 B 96 MET PHE SER ASP ASP GLN LEU VAL SER MET SER VAL ARG SEQRES 2 B 96 GLU LEU ASN ARG HIS LEU ARG GLY PHE THR LYS ASP GLU SEQRES 3 B 96 VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU LYS ASN SEQRES 4 B 96 ARG GLY TYR ALA GLN SER CYS ARG TYR LYS ARG VAL GLN SEQRES 5 B 96 GLN LYS HIS HIS LEU GLU ASN GLU LYS THR GLN LEU ILE SEQRES 6 B 96 GLN GLN VAL GLU GLN LEU LYS GLN GLU VAL SER ARG LEU SEQRES 7 B 96 ALA ARG GLU ARG ASP ALA TYR LYS VAL LYS SER GLU LYS SEQRES 8 B 96 LEU ALA ASN SER GLY SEQRES 1 C 21 DT DA DA DT DT DG DC DT DG DA DC DG DT SEQRES 2 C 21 DC DA DG DC DA DT DT DA SEQRES 1 D 21 DA DT DA DA DT DG DC DT DG DA DC DG DT SEQRES 2 D 21 DC DA DG DC DA DA DT DT SEQRES 1 E 96 MET PHE SER ASP ASP GLN LEU VAL SER MET SER VAL ARG SEQRES 2 E 96 GLU LEU ASN ARG HIS LEU ARG GLY PHE THR LYS ASP GLU SEQRES 3 E 96 VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU LYS ASN SEQRES 4 E 96 ARG GLY TYR ALA GLN SER CYS ARG TYR LYS ARG VAL GLN SEQRES 5 E 96 GLN LYS HIS HIS LEU GLU ASN GLU LYS THR GLN LEU ILE SEQRES 6 E 96 GLN GLN VAL GLU GLN LEU LYS GLN GLU VAL SER ARG LEU SEQRES 7 E 96 ALA ARG GLU ARG ASP ALA TYR LYS VAL LYS SER GLU LYS SEQRES 8 E 96 LEU ALA ASN SER GLY SEQRES 1 F 96 MET PHE SER ASP ASP GLN LEU VAL SER MET SER VAL ARG SEQRES 2 F 96 GLU LEU ASN ARG HIS LEU ARG GLY PHE THR LYS ASP GLU SEQRES 3 F 96 VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU LYS ASN SEQRES 4 F 96 ARG GLY TYR ALA GLN SER CYS ARG TYR LYS ARG VAL GLN SEQRES 5 F 96 GLN LYS HIS HIS LEU GLU ASN GLU LYS THR GLN LEU ILE SEQRES 6 F 96 GLN GLN VAL GLU GLN LEU LYS GLN GLU VAL SER ARG LEU SEQRES 7 F 96 ALA ARG GLU ARG ASP ALA TYR LYS VAL LYS SER GLU LYS SEQRES 8 F 96 LEU ALA ASN SER GLY SEQRES 1 G 21 DA DT DA DA DT DG DC DT DG DA DC DG DT SEQRES 2 G 21 DC DA DG DC DA DA DT DT SEQRES 1 H 21 DT DA DA DT DT DG DC DT DG DA DC DG DT SEQRES 2 H 21 DC DA DG DC DA DT DT DA HET HG A1299 1 HET HG B1298 1 HET DTU B1299 8 HET HG E1300 1 HET HG F1299 1 HETNAM HG MERCURY (II) ION HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL FORMUL 9 HG 4(HG 2+) FORMUL 11 DTU C4 H10 O2 S2 HELIX 1 1 SER A 212 SER A 218 1 7 HELIX 2 2 SER A 220 ARG A 226 1 7 HELIX 3 3 THR A 232 SER A 298 1 67 HELIX 4 4 ASP B 213 SER B 218 5 6 HELIX 5 5 SER B 220 ARG B 229 1 10 HELIX 6 6 THR B 232 LYS B 297 1 66 HELIX 7 7 SER E 212 MET E 219 1 8 HELIX 8 8 ARG E 222 LEU E 228 1 7 HELIX 9 9 THR E 232 VAL E 296 1 65 HELIX 10 10 SER F 212 SER F 218 1 7 HELIX 11 11 SER F 220 LEU F 228 1 9 HELIX 12 12 THR F 232 SER F 298 1 67 LINK HG HG A1299 O CYS A 255 1555 1555 3.05 LINK HG HG A1299 SG CYS A 255 1555 1555 2.51 LINK HG HG A1299 OP2 DT D 8 1555 1555 3.05 LINK HG HG B1298 OP2 DT C 8 1555 1555 3.08 LINK HG HG B1298 O CYS B 255 1555 1555 2.87 LINK HG HG E1300 O CYS E 255 1555 1555 2.89 LINK HG HG E1300 OP2 DT G 8 1555 1555 3.16 LINK HG HG F1299 O CYS F 255 1555 1555 3.15 SITE 1 AC1 3 CYS A 255 ARG A 259 DT D 8 SITE 1 AC2 2 CYS B 255 DT C 8 SITE 1 AC3 2 CYS F 255 DT H 8 SITE 1 AC4 3 CYS E 255 ARG E 259 DT G 8 SITE 1 AC5 6 GLY B 250 GLN B 253 SER B 254 GLY E 250 SITE 2 AC5 6 GLN E 253 SER E 254 CRYST1 94.964 94.964 200.111 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004997 0.00000