data_4AW9 # _entry.id 4AW9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4AW9 PDBE EBI-52724 WWPDB D_1290052724 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4AWA unspecified 'CRYSTAL STRUCTURE OF ACTIVE LEGUMAIN IN COMPLEX WITH YVAD-CMK AT PH 5.0' PDB 4AWB unspecified 'CRYSTAL STRUCTURE OF ACTIVE LEGUMAIN IN COMPLEX WITH AAN-CMK' PDB 4FGU unspecified 'CRYSTAL STRUCTURE OF PROLEGUMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AW9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-06-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dall, E.' 1 'Brandstetter, H.' 2 # _citation.id primary _citation.title 'Mechanistic and Structural Studies on Legumain Explain its Zymogenicity, Distinct Activation Pathways, and Regulation' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 10940 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23776206 _citation.pdbx_database_id_DOI 10.1073/PNAS.1300686110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dall, E.' 1 ? primary 'Brandstetter, H.' 2 ? # _cell.entry_id 4AW9 _cell.length_a 64.140 _cell.length_b 64.140 _cell.length_c 78.950 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AW9 _symmetry.space_group_name_H-M 'P 42' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man LEGUMAIN 32273.203 1 3.4.22.34 YES 'CATALYTIC DOMAIN, RESIDUES 26-309' ? 2 polymer syn ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE 524.996 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 5 water nat water 18.015 148 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'ASPARAGINYL ENDOPEPTIDASE, PROTEASE\, CYSTEINE 1' 2 YVAD-CMK # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTG EDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYRKMVFY IEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTQTS HVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVTHLDLTPSPD ; ;GGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTG EDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYRKMVFY IEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTQTS HVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVTHLDLTPSPD ; A ? 2 'polypeptide(L)' no yes '(ACE)YVAD(0QE)' XYVADX I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 LYS n 1 4 HIS n 1 5 TRP n 1 6 VAL n 1 7 VAL n 1 8 ILE n 1 9 VAL n 1 10 ALA n 1 11 GLY n 1 12 SER n 1 13 ASN n 1 14 GLY n 1 15 TRP n 1 16 TYR n 1 17 ASN n 1 18 TYR n 1 19 ARG n 1 20 HIS n 1 21 GLN n 1 22 ALA n 1 23 ASP n 1 24 ALA n 1 25 CYS n 1 26 HIS n 1 27 ALA n 1 28 TYR n 1 29 GLN n 1 30 ILE n 1 31 ILE n 1 32 HIS n 1 33 ARG n 1 34 ASN n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 ASP n 1 39 GLU n 1 40 GLN n 1 41 ILE n 1 42 VAL n 1 43 VAL n 1 44 MET n 1 45 MET n 1 46 TYR n 1 47 ASP n 1 48 ASP n 1 49 ILE n 1 50 ALA n 1 51 TYR n 1 52 SER n 1 53 GLU n 1 54 ASP n 1 55 ASN n 1 56 PRO n 1 57 THR n 1 58 PRO n 1 59 GLY n 1 60 ILE n 1 61 VAL n 1 62 ILE n 1 63 ASN n 1 64 ARG n 1 65 PRO n 1 66 ASN n 1 67 GLY n 1 68 THR n 1 69 ASP n 1 70 VAL n 1 71 TYR n 1 72 GLN n 1 73 GLY n 1 74 VAL n 1 75 PRO n 1 76 LYS n 1 77 ASP n 1 78 TYR n 1 79 THR n 1 80 GLY n 1 81 GLU n 1 82 ASP n 1 83 VAL n 1 84 THR n 1 85 PRO n 1 86 GLN n 1 87 ASN n 1 88 PHE n 1 89 LEU n 1 90 ALA n 1 91 VAL n 1 92 LEU n 1 93 ARG n 1 94 GLY n 1 95 ASP n 1 96 ALA n 1 97 GLU n 1 98 ALA n 1 99 VAL n 1 100 LYS n 1 101 GLY n 1 102 ILE n 1 103 GLY n 1 104 SER n 1 105 GLY n 1 106 LYS n 1 107 VAL n 1 108 LEU n 1 109 LYS n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 GLN n 1 114 ASP n 1 115 HIS n 1 116 VAL n 1 117 PHE n 1 118 ILE n 1 119 TYR n 1 120 PHE n 1 121 THR n 1 122 ASP n 1 123 HIS n 1 124 GLY n 1 125 SER n 1 126 THR n 1 127 GLY n 1 128 ILE n 1 129 LEU n 1 130 VAL n 1 131 PHE n 1 132 PRO n 1 133 ASN n 1 134 GLU n 1 135 ASP n 1 136 LEU n 1 137 HIS n 1 138 VAL n 1 139 LYS n 1 140 ASP n 1 141 LEU n 1 142 ASN n 1 143 GLU n 1 144 THR n 1 145 ILE n 1 146 HIS n 1 147 TYR n 1 148 MET n 1 149 TYR n 1 150 LYS n 1 151 HIS n 1 152 LYS n 1 153 MET n 1 154 TYR n 1 155 ARG n 1 156 LYS n 1 157 MET n 1 158 VAL n 1 159 PHE n 1 160 TYR n 1 161 ILE n 1 162 GLU n 1 163 ALA n 1 164 CYS n 1 165 GLU n 1 166 SER n 1 167 GLY n 1 168 SER n 1 169 MET n 1 170 MET n 1 171 ASN n 1 172 HIS n 1 173 LEU n 1 174 PRO n 1 175 ASP n 1 176 ASN n 1 177 ILE n 1 178 ASN n 1 179 VAL n 1 180 TYR n 1 181 ALA n 1 182 THR n 1 183 THR n 1 184 ALA n 1 185 ALA n 1 186 ASN n 1 187 PRO n 1 188 ARG n 1 189 GLU n 1 190 SER n 1 191 SER n 1 192 TYR n 1 193 ALA n 1 194 CYS n 1 195 TYR n 1 196 TYR n 1 197 ASP n 1 198 GLU n 1 199 LYS n 1 200 ARG n 1 201 SER n 1 202 THR n 1 203 TYR n 1 204 LEU n 1 205 GLY n 1 206 ASP n 1 207 TRP n 1 208 TYR n 1 209 SER n 1 210 VAL n 1 211 ASN n 1 212 TRP n 1 213 MET n 1 214 GLU n 1 215 ASP n 1 216 SER n 1 217 ASP n 1 218 VAL n 1 219 GLU n 1 220 ASP n 1 221 LEU n 1 222 THR n 1 223 LYS n 1 224 GLU n 1 225 THR n 1 226 LEU n 1 227 HIS n 1 228 LYS n 1 229 GLN n 1 230 TYR n 1 231 HIS n 1 232 LEU n 1 233 VAL n 1 234 LYS n 1 235 SER n 1 236 HIS n 1 237 THR n 1 238 GLN n 1 239 THR n 1 240 SER n 1 241 HIS n 1 242 VAL n 1 243 MET n 1 244 GLN n 1 245 TYR n 1 246 GLY n 1 247 ASN n 1 248 LYS n 1 249 THR n 1 250 ILE n 1 251 SER n 1 252 THR n 1 253 MET n 1 254 LYS n 1 255 VAL n 1 256 MET n 1 257 GLN n 1 258 PHE n 1 259 GLN n 1 260 GLY n 1 261 MET n 1 262 LYS n 1 263 ARG n 1 264 LYS n 1 265 ALA n 1 266 SER n 1 267 SER n 1 268 PRO n 1 269 VAL n 1 270 PRO n 1 271 LEU n 1 272 PRO n 1 273 PRO n 1 274 VAL n 1 275 THR n 1 276 HIS n 1 277 LEU n 1 278 ASP n 1 279 LEU n 1 280 THR n 1 281 PRO n 1 282 SER n 1 283 PRO n 1 284 ASP n 2 1 ACE n 2 2 TYR n 2 3 VAL n 2 4 ALA n 2 5 ASP n 2 6 0QE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'LEISHMANIA TARENTOLAE' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 5689 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain P10 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP LGMN_HUMAN 1 ? ? Q99538 ? 2 PDB 4AW9 2 ? ? 4AW9 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AW9 A 1 ? 284 ? Q99538 26 ? 309 ? 26 309 2 2 4AW9 I 1 ? 6 ? 4AW9 300 ? 305 ? 300 305 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4AW9 _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 238 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q99538 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 263 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 263 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0QE non-polymer . chloromethane 'Chloro Methyl group' 'C H3 Cl' 50.488 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AW9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 49 _exptl_crystal.description ;AUTO-RICKSHAW WAS USED TO DETERMINE AN INITIAL MODEL OF A MERCURY DERIVATIVE (1.0059) FOLLOWED BY MOLECULAR REPLACEMENT INTO A NATIVE DATASET. ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES PH 7.5, 0.2 M LITHIUM SULFATE MONOHYDRATE, 25 % PEG 3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0722 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 1.0722 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AW9 _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.79 _reflns.d_resolution_high 2.18 _reflns.number_obs 16856 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.18 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.80 _reflns_shell.pdbx_redundancy 14.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AW9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13893 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 90.12 _refine.ls_R_factor_obs 0.18170 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18031 _refine.ls_R_factor_R_free 0.20700 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.5 _refine.ls_number_reflns_R_free 815 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 31.150 _refine.aniso_B[1][1] -0.67 _refine.aniso_B[2][2] -0.67 _refine.aniso_B[3][3] 1.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.064 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.overall_SU_ML 0.169 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.269 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2151 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 2356 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 48.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.020 ? 2266 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.038 1.969 ? 3078 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.944 5.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.278 24.545 ? 110 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.358 15.000 ? 358 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5.690 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.063 0.200 ? 327 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 1752 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 687 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.percent_reflns_obs 61.53 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AW9 _struct.title 'Crystal structure of active legumain in complex with YVAD-CMK' _struct.pdbx_descriptor 'LEGUMAIN (E.C.3.4.22.34), ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AW9 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HYDROLASE-HYDROLASE INHIBITOR COMPLEX, CYSTEINE PROTEASE, LYSOSOMAL, AEP, SUBSTRATE SPECIFICITY, MHCII, ANTIGEN PROCESSING, CANCER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ;CHAIN I IS A COVALENTLY LINKED TO CHAIN A VIA A CH2 GROUP. CHAIN I IS AN ACTIVE SITE-DIRECTED COVALENT INHIBITOR. THE STRUCTURE THEREFORE PRESENTS AS EFFECTIVELY A MONOMERIC FORM. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 2 ASN A 17 ? ASN A 34 ? ASN A 42 ASN A 59 1 ? 18 HELX_P HELX_P2 3 PRO A 37 ? GLU A 39 ? PRO A 62 GLU A 64 5 ? 3 HELX_P HELX_P3 5 THR A 84 ? GLY A 94 ? THR A 109 GLY A 119 1 ? 11 HELX_P HELX_P4 6 ALA A 96 ? LYS A 100 ? ALA A 121 LYS A 125 5 ? 5 HELX_P HELX_P5 7 VAL A 138 ? HIS A 151 ? VAL A 163 HIS A 176 1 ? 14 HELX_P HELX_P6 8 GLU A 165 ? MET A 170 ? GLU A 190 MET A 195 5 ? 6 HELX_P HELX_P7 9 TRP A 207 ? GLU A 219 ? TRP A 232 GLU A 244 1 ? 13 HELX_P HELX_P8 10 THR A 225 ? THR A 237 ? THR A 250 THR A 262 1 ? 13 HELX_P HELX_P9 11 LYS A 248 ? MET A 253 ? LYS A 273 MET A 278 5 ? 6 HELX_P HELX_P10 12 VAL A 255 ? GLY A 260 ? VAL A 280 GLY A 285 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A ASN 66 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 91 A NAG 312 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale2 covale one ? A ASN 142 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 167 A NAG 310 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale3 covale one ? A CYS 164 SG ? ? ? 1_555 B 0QE 6 C1 ? ? A CYS 189 I 0QE 305 1_555 ? ? ? ? ? ? ? 1.759 ? ? covale4 covale one ? A ASN 247 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 272 A NAG 311 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale5 covale both ? B ACE 1 C ? ? ? 1_555 B TYR 2 N ? ? I ACE 300 I TYR 301 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 3 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 41 ? MET A 44 ? ILE A 66 MET A 69 AA 2 HIS A 4 ? ALA A 10 ? HIS A 29 ALA A 35 AA 3 HIS A 115 ? THR A 121 ? HIS A 140 THR A 146 AA 4 LYS A 156 ? GLU A 162 ? LYS A 181 GLU A 187 AA 5 VAL A 179 ? THR A 183 ? VAL A 204 THR A 208 AA 6 MET A 243 ? GLY A 246 ? MET A 268 GLY A 271 AB 1 GLY A 124 ? SER A 125 ? GLY A 149 SER A 150 AB 2 ILE A 128 ? VAL A 130 ? ILE A 153 VAL A 155 AB 3 ASP A 135 ? HIS A 137 ? ASP A 160 HIS A 162 AC 1 ALA A 193 ? ASP A 197 ? ALA A 218 ASP A 222 AC 2 THR A 202 ? ASP A 206 ? THR A 227 ASP A 231 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 42 ? N VAL A 67 O VAL A 6 ? O VAL A 31 AA 2 3 N TRP A 5 ? N TRP A 30 O HIS A 115 ? O HIS A 140 AA 3 4 N VAL A 116 ? N VAL A 141 O LYS A 156 ? O LYS A 181 AA 4 5 N PHE A 159 ? N PHE A 184 O TYR A 180 ? O TYR A 205 AA 5 6 N THR A 183 ? N THR A 208 O MET A 243 ? O MET A 268 AB 1 2 N SER A 125 ? N SER A 150 O ILE A 128 ? O ILE A 153 AB 2 3 N LEU A 129 ? N LEU A 154 O LEU A 136 ? O LEU A 161 AC 1 2 N ASP A 197 ? N ASP A 222 O THR A 202 ? O THR A 227 # _database_PDB_matrix.entry_id 4AW9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AW9 _atom_sites.fract_transf_matrix[1][1] 0.015591 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015591 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012666 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 26 26 GLY GLY A . n A 1 2 GLY 2 27 27 GLY GLY A . n A 1 3 LYS 3 28 28 LYS LYS A . n A 1 4 HIS 4 29 29 HIS HIS A . n A 1 5 TRP 5 30 30 TRP TRP A . n A 1 6 VAL 6 31 31 VAL VAL A . n A 1 7 VAL 7 32 32 VAL VAL A . n A 1 8 ILE 8 33 33 ILE ILE A . n A 1 9 VAL 9 34 34 VAL VAL A . n A 1 10 ALA 10 35 35 ALA ALA A . n A 1 11 GLY 11 36 36 GLY GLY A . n A 1 12 SER 12 37 37 SER SER A . n A 1 13 ASN 13 38 38 ASN ASN A . n A 1 14 GLY 14 39 39 GLY GLY A . n A 1 15 TRP 15 40 40 TRP TRP A . n A 1 16 TYR 16 41 41 TYR TYR A . n A 1 17 ASN 17 42 42 ASN ASN A . n A 1 18 TYR 18 43 43 TYR TYR A . n A 1 19 ARG 19 44 44 ARG ARG A . n A 1 20 HIS 20 45 45 HIS HIS A . n A 1 21 GLN 21 46 46 GLN GLN A . n A 1 22 ALA 22 47 47 ALA ALA A . n A 1 23 ASP 23 48 48 ASP ASP A . n A 1 24 ALA 24 49 49 ALA ALA A . n A 1 25 CYS 25 50 50 CYS CYS A . n A 1 26 HIS 26 51 51 HIS HIS A . n A 1 27 ALA 27 52 52 ALA ALA A . n A 1 28 TYR 28 53 53 TYR TYR A . n A 1 29 GLN 29 54 54 GLN GLN A . n A 1 30 ILE 30 55 55 ILE ILE A . n A 1 31 ILE 31 56 56 ILE ILE A . n A 1 32 HIS 32 57 57 HIS HIS A . n A 1 33 ARG 33 58 58 ARG ARG A . n A 1 34 ASN 34 59 59 ASN ASN A . n A 1 35 GLY 35 60 60 GLY GLY A . n A 1 36 ILE 36 61 61 ILE ILE A . n A 1 37 PRO 37 62 62 PRO PRO A . n A 1 38 ASP 38 63 63 ASP ASP A . n A 1 39 GLU 39 64 64 GLU GLU A . n A 1 40 GLN 40 65 65 GLN GLN A . n A 1 41 ILE 41 66 66 ILE ILE A . n A 1 42 VAL 42 67 67 VAL VAL A . n A 1 43 VAL 43 68 68 VAL VAL A . n A 1 44 MET 44 69 69 MET MET A . n A 1 45 MET 45 70 70 MET MET A . n A 1 46 TYR 46 71 71 TYR TYR A . n A 1 47 ASP 47 72 72 ASP ASP A . n A 1 48 ASP 48 73 73 ASP ASP A . n A 1 49 ILE 49 74 74 ILE ILE A . n A 1 50 ALA 50 75 75 ALA ALA A . n A 1 51 TYR 51 76 76 TYR TYR A . n A 1 52 SER 52 77 77 SER SER A . n A 1 53 GLU 53 78 78 GLU GLU A . n A 1 54 ASP 54 79 79 ASP ASP A . n A 1 55 ASN 55 80 80 ASN ASN A . n A 1 56 PRO 56 81 81 PRO PRO A . n A 1 57 THR 57 82 82 THR THR A . n A 1 58 PRO 58 83 83 PRO PRO A . n A 1 59 GLY 59 84 84 GLY GLY A . n A 1 60 ILE 60 85 85 ILE ILE A . n A 1 61 VAL 61 86 86 VAL VAL A . n A 1 62 ILE 62 87 87 ILE ILE A . n A 1 63 ASN 63 88 88 ASN ASN A . n A 1 64 ARG 64 89 89 ARG ARG A . n A 1 65 PRO 65 90 90 PRO PRO A . n A 1 66 ASN 66 91 91 ASN ASN A . n A 1 67 GLY 67 92 92 GLY GLY A . n A 1 68 THR 68 93 93 THR THR A . n A 1 69 ASP 69 94 94 ASP ASP A . n A 1 70 VAL 70 95 95 VAL VAL A . n A 1 71 TYR 71 96 96 TYR TYR A . n A 1 72 GLN 72 97 97 GLN GLN A . n A 1 73 GLY 73 98 98 GLY GLY A . n A 1 74 VAL 74 99 99 VAL VAL A . n A 1 75 PRO 75 100 100 PRO PRO A . n A 1 76 LYS 76 101 101 LYS LYS A . n A 1 77 ASP 77 102 102 ASP ASP A . n A 1 78 TYR 78 103 103 TYR TYR A . n A 1 79 THR 79 104 104 THR THR A . n A 1 80 GLY 80 105 105 GLY GLY A . n A 1 81 GLU 81 106 106 GLU GLU A . n A 1 82 ASP 82 107 107 ASP ASP A . n A 1 83 VAL 83 108 108 VAL VAL A . n A 1 84 THR 84 109 109 THR THR A . n A 1 85 PRO 85 110 110 PRO PRO A . n A 1 86 GLN 86 111 111 GLN GLN A . n A 1 87 ASN 87 112 112 ASN ASN A . n A 1 88 PHE 88 113 113 PHE PHE A . n A 1 89 LEU 89 114 114 LEU LEU A . n A 1 90 ALA 90 115 115 ALA ALA A . n A 1 91 VAL 91 116 116 VAL VAL A . n A 1 92 LEU 92 117 117 LEU LEU A . n A 1 93 ARG 93 118 118 ARG ARG A . n A 1 94 GLY 94 119 119 GLY GLY A . n A 1 95 ASP 95 120 120 ASP ASP A . n A 1 96 ALA 96 121 121 ALA ALA A . n A 1 97 GLU 97 122 122 GLU GLU A . n A 1 98 ALA 98 123 123 ALA ALA A . n A 1 99 VAL 99 124 124 VAL VAL A . n A 1 100 LYS 100 125 125 LYS LYS A . n A 1 101 GLY 101 126 126 GLY GLY A . n A 1 102 ILE 102 127 127 ILE ILE A . n A 1 103 GLY 103 128 128 GLY GLY A . n A 1 104 SER 104 129 129 SER SER A . n A 1 105 GLY 105 130 130 GLY GLY A . n A 1 106 LYS 106 131 131 LYS LYS A . n A 1 107 VAL 107 132 132 VAL VAL A . n A 1 108 LEU 108 133 133 LEU LEU A . n A 1 109 LYS 109 134 134 LYS LYS A . n A 1 110 SER 110 135 135 SER SER A . n A 1 111 GLY 111 136 136 GLY GLY A . n A 1 112 PRO 112 137 137 PRO PRO A . n A 1 113 GLN 113 138 138 GLN GLN A . n A 1 114 ASP 114 139 139 ASP ASP A . n A 1 115 HIS 115 140 140 HIS HIS A . n A 1 116 VAL 116 141 141 VAL VAL A . n A 1 117 PHE 117 142 142 PHE PHE A . n A 1 118 ILE 118 143 143 ILE ILE A . n A 1 119 TYR 119 144 144 TYR TYR A . n A 1 120 PHE 120 145 145 PHE PHE A . n A 1 121 THR 121 146 146 THR THR A . n A 1 122 ASP 122 147 147 ASP ASP A . n A 1 123 HIS 123 148 148 HIS HIS A . n A 1 124 GLY 124 149 149 GLY GLY A . n A 1 125 SER 125 150 150 SER SER A . n A 1 126 THR 126 151 151 THR THR A . n A 1 127 GLY 127 152 152 GLY GLY A . n A 1 128 ILE 128 153 153 ILE ILE A . n A 1 129 LEU 129 154 154 LEU LEU A . n A 1 130 VAL 130 155 155 VAL VAL A . n A 1 131 PHE 131 156 156 PHE PHE A . n A 1 132 PRO 132 157 157 PRO PRO A . n A 1 133 ASN 133 158 158 ASN ASN A . n A 1 134 GLU 134 159 159 GLU GLU A . n A 1 135 ASP 135 160 160 ASP ASP A . n A 1 136 LEU 136 161 161 LEU LEU A . n A 1 137 HIS 137 162 162 HIS HIS A . n A 1 138 VAL 138 163 163 VAL VAL A . n A 1 139 LYS 139 164 164 LYS LYS A . n A 1 140 ASP 140 165 165 ASP ASP A . n A 1 141 LEU 141 166 166 LEU LEU A . n A 1 142 ASN 142 167 167 ASN ASN A . n A 1 143 GLU 143 168 168 GLU GLU A . n A 1 144 THR 144 169 169 THR THR A . n A 1 145 ILE 145 170 170 ILE ILE A . n A 1 146 HIS 146 171 171 HIS HIS A . n A 1 147 TYR 147 172 172 TYR TYR A . n A 1 148 MET 148 173 173 MET MET A . n A 1 149 TYR 149 174 174 TYR TYR A . n A 1 150 LYS 150 175 175 LYS LYS A . n A 1 151 HIS 151 176 176 HIS HIS A . n A 1 152 LYS 152 177 177 LYS LYS A . n A 1 153 MET 153 178 178 MET MET A . n A 1 154 TYR 154 179 179 TYR TYR A . n A 1 155 ARG 155 180 180 ARG ARG A . n A 1 156 LYS 156 181 181 LYS LYS A . n A 1 157 MET 157 182 182 MET MET A . n A 1 158 VAL 158 183 183 VAL VAL A . n A 1 159 PHE 159 184 184 PHE PHE A . n A 1 160 TYR 160 185 185 TYR TYR A . n A 1 161 ILE 161 186 186 ILE ILE A . n A 1 162 GLU 162 187 187 GLU GLU A . n A 1 163 ALA 163 188 188 ALA ALA A . n A 1 164 CYS 164 189 189 CYS CYS A . n A 1 165 GLU 165 190 190 GLU GLU A . n A 1 166 SER 166 191 191 SER SER A . n A 1 167 GLY 167 192 192 GLY GLY A . n A 1 168 SER 168 193 193 SER SER A . n A 1 169 MET 169 194 194 MET MET A . n A 1 170 MET 170 195 195 MET MET A . n A 1 171 ASN 171 196 196 ASN ASN A . n A 1 172 HIS 172 197 197 HIS HIS A . n A 1 173 LEU 173 198 198 LEU LEU A . n A 1 174 PRO 174 199 199 PRO PRO A . n A 1 175 ASP 175 200 200 ASP ASP A . n A 1 176 ASN 176 201 201 ASN ASN A . n A 1 177 ILE 177 202 202 ILE ILE A . n A 1 178 ASN 178 203 203 ASN ASN A . n A 1 179 VAL 179 204 204 VAL VAL A . n A 1 180 TYR 180 205 205 TYR TYR A . n A 1 181 ALA 181 206 206 ALA ALA A . n A 1 182 THR 182 207 207 THR THR A . n A 1 183 THR 183 208 208 THR THR A . n A 1 184 ALA 184 209 209 ALA ALA A . n A 1 185 ALA 185 210 210 ALA ALA A . n A 1 186 ASN 186 211 211 ASN ASN A . n A 1 187 PRO 187 212 212 PRO PRO A . n A 1 188 ARG 188 213 213 ARG ARG A . n A 1 189 GLU 189 214 214 GLU GLU A . n A 1 190 SER 190 215 215 SER SER A . n A 1 191 SER 191 216 216 SER SER A . n A 1 192 TYR 192 217 217 TYR TYR A . n A 1 193 ALA 193 218 218 ALA ALA A . n A 1 194 CYS 194 219 219 CYS CYS A . n A 1 195 TYR 195 220 220 TYR TYR A . n A 1 196 TYR 196 221 221 TYR TYR A . n A 1 197 ASP 197 222 222 ASP ASP A . n A 1 198 GLU 198 223 223 GLU GLU A . n A 1 199 LYS 199 224 224 LYS LYS A . n A 1 200 ARG 200 225 225 ARG ARG A . n A 1 201 SER 201 226 226 SER SER A . n A 1 202 THR 202 227 227 THR THR A . n A 1 203 TYR 203 228 228 TYR TYR A . n A 1 204 LEU 204 229 229 LEU LEU A . n A 1 205 GLY 205 230 230 GLY GLY A . n A 1 206 ASP 206 231 231 ASP ASP A . n A 1 207 TRP 207 232 232 TRP TRP A . n A 1 208 TYR 208 233 233 TYR TYR A . n A 1 209 SER 209 234 234 SER SER A . n A 1 210 VAL 210 235 235 VAL VAL A . n A 1 211 ASN 211 236 236 ASN ASN A . n A 1 212 TRP 212 237 237 TRP TRP A . n A 1 213 MET 213 238 238 MET MET A . n A 1 214 GLU 214 239 239 GLU GLU A . n A 1 215 ASP 215 240 240 ASP ASP A . n A 1 216 SER 216 241 241 SER SER A . n A 1 217 ASP 217 242 242 ASP ASP A . n A 1 218 VAL 218 243 243 VAL VAL A . n A 1 219 GLU 219 244 244 GLU GLU A . n A 1 220 ASP 220 245 245 ASP ASP A . n A 1 221 LEU 221 246 246 LEU LEU A . n A 1 222 THR 222 247 247 THR THR A . n A 1 223 LYS 223 248 248 LYS LYS A . n A 1 224 GLU 224 249 249 GLU GLU A . n A 1 225 THR 225 250 250 THR THR A . n A 1 226 LEU 226 251 251 LEU LEU A . n A 1 227 HIS 227 252 252 HIS HIS A . n A 1 228 LYS 228 253 253 LYS LYS A . n A 1 229 GLN 229 254 254 GLN GLN A . n A 1 230 TYR 230 255 255 TYR TYR A . n A 1 231 HIS 231 256 256 HIS HIS A . n A 1 232 LEU 232 257 257 LEU LEU A . n A 1 233 VAL 233 258 258 VAL VAL A . n A 1 234 LYS 234 259 259 LYS LYS A . n A 1 235 SER 235 260 260 SER SER A . n A 1 236 HIS 236 261 261 HIS HIS A . n A 1 237 THR 237 262 262 THR THR A . n A 1 238 GLN 238 263 263 GLN GLN A . n A 1 239 THR 239 264 264 THR THR A . n A 1 240 SER 240 265 265 SER SER A . n A 1 241 HIS 241 266 266 HIS HIS A . n A 1 242 VAL 242 267 267 VAL VAL A . n A 1 243 MET 243 268 268 MET MET A . n A 1 244 GLN 244 269 269 GLN GLN A . n A 1 245 TYR 245 270 270 TYR TYR A . n A 1 246 GLY 246 271 271 GLY GLY A . n A 1 247 ASN 247 272 272 ASN ASN A . n A 1 248 LYS 248 273 273 LYS LYS A . n A 1 249 THR 249 274 274 THR THR A . n A 1 250 ILE 250 275 275 ILE ILE A . n A 1 251 SER 251 276 276 SER SER A . n A 1 252 THR 252 277 277 THR THR A . n A 1 253 MET 253 278 278 MET MET A . n A 1 254 LYS 254 279 279 LYS LYS A . n A 1 255 VAL 255 280 280 VAL VAL A . n A 1 256 MET 256 281 281 MET MET A . n A 1 257 GLN 257 282 282 GLN GLN A . n A 1 258 PHE 258 283 283 PHE PHE A . n A 1 259 GLN 259 284 284 GLN GLN A . n A 1 260 GLY 260 285 285 GLY GLY A . n A 1 261 MET 261 286 286 MET MET A . n A 1 262 LYS 262 287 287 LYS LYS A . n A 1 263 ARG 263 288 288 ARG ARG A . n A 1 264 LYS 264 289 ? ? ? A . n A 1 265 ALA 265 290 ? ? ? A . n A 1 266 SER 266 291 ? ? ? A . n A 1 267 SER 267 292 ? ? ? A . n A 1 268 PRO 268 293 ? ? ? A . n A 1 269 VAL 269 294 ? ? ? A . n A 1 270 PRO 270 295 ? ? ? A . n A 1 271 LEU 271 296 ? ? ? A . n A 1 272 PRO 272 297 ? ? ? A . n A 1 273 PRO 273 298 ? ? ? A . n A 1 274 VAL 274 299 ? ? ? A . n A 1 275 THR 275 300 ? ? ? A . n A 1 276 HIS 276 301 ? ? ? A . n A 1 277 LEU 277 302 ? ? ? A . n A 1 278 ASP 278 303 ? ? ? A . n A 1 279 LEU 279 304 ? ? ? A . n A 1 280 THR 280 305 ? ? ? A . n A 1 281 PRO 281 306 ? ? ? A . n A 1 282 SER 282 307 ? ? ? A . n A 1 283 PRO 283 308 ? ? ? A . n A 1 284 ASP 284 309 ? ? ? A . n B 2 1 ACE 1 300 300 ACE ACE I . n B 2 2 TYR 2 301 301 TYR TYR I . n B 2 3 VAL 3 302 302 VAL VAL I . n B 2 4 ALA 4 303 303 ALA ALA I . n B 2 5 ASP 5 304 304 ASP ASP I . n B 2 6 0QE 6 305 305 0QE 0QE I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 310 310 NAG NAG A . D 3 NAG 1 311 311 NAG NAG A . E 3 NAG 1 312 312 NAG NAG A . F 4 SO4 1 315 315 SO4 SO4 A . G 4 SO4 1 316 316 SO4 SO4 A . H 4 SO4 1 317 317 SO4 SO4 A . I 5 HOH 1 2001 2001 HOH HOH A . I 5 HOH 2 2002 2002 HOH HOH A . I 5 HOH 3 2003 2003 HOH HOH A . I 5 HOH 4 2004 2004 HOH HOH A . I 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 6 2006 2006 HOH HOH A . I 5 HOH 7 2007 2007 HOH HOH A . I 5 HOH 8 2008 2008 HOH HOH A . I 5 HOH 9 2009 2009 HOH HOH A . I 5 HOH 10 2010 2010 HOH HOH A . I 5 HOH 11 2011 2011 HOH HOH A . I 5 HOH 12 2012 2012 HOH HOH A . I 5 HOH 13 2013 2013 HOH HOH A . I 5 HOH 14 2014 2014 HOH HOH A . I 5 HOH 15 2015 2015 HOH HOH A . I 5 HOH 16 2016 2016 HOH HOH A . I 5 HOH 17 2017 2017 HOH HOH A . I 5 HOH 18 2018 2018 HOH HOH A . I 5 HOH 19 2019 2019 HOH HOH A . I 5 HOH 20 2020 2020 HOH HOH A . I 5 HOH 21 2021 2021 HOH HOH A . I 5 HOH 22 2022 2022 HOH HOH A . I 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 24 2024 2024 HOH HOH A . I 5 HOH 25 2025 2025 HOH HOH A . I 5 HOH 26 2026 2026 HOH HOH A . I 5 HOH 27 2027 2027 HOH HOH A . I 5 HOH 28 2028 2028 HOH HOH A . I 5 HOH 29 2029 2029 HOH HOH A . I 5 HOH 30 2030 2030 HOH HOH A . I 5 HOH 31 2031 2031 HOH HOH A . I 5 HOH 32 2032 2032 HOH HOH A . I 5 HOH 33 2033 2033 HOH HOH A . I 5 HOH 34 2034 2034 HOH HOH A . I 5 HOH 35 2035 2035 HOH HOH A . I 5 HOH 36 2036 2036 HOH HOH A . I 5 HOH 37 2037 2037 HOH HOH A . I 5 HOH 38 2038 2038 HOH HOH A . I 5 HOH 39 2039 2039 HOH HOH A . I 5 HOH 40 2040 2040 HOH HOH A . I 5 HOH 41 2041 2041 HOH HOH A . I 5 HOH 42 2042 2042 HOH HOH A . I 5 HOH 43 2043 2043 HOH HOH A . I 5 HOH 44 2044 2044 HOH HOH A . I 5 HOH 45 2045 2045 HOH HOH A . I 5 HOH 46 2046 2046 HOH HOH A . I 5 HOH 47 2047 2047 HOH HOH A . I 5 HOH 48 2048 2048 HOH HOH A . I 5 HOH 49 2049 2049 HOH HOH A . I 5 HOH 50 2050 2050 HOH HOH A . I 5 HOH 51 2051 2051 HOH HOH A . I 5 HOH 52 2052 2052 HOH HOH A . I 5 HOH 53 2053 2053 HOH HOH A . I 5 HOH 54 2054 2054 HOH HOH A . I 5 HOH 55 2055 2055 HOH HOH A . I 5 HOH 56 2056 2056 HOH HOH A . I 5 HOH 57 2057 2057 HOH HOH A . I 5 HOH 58 2058 2058 HOH HOH A . I 5 HOH 59 2059 2059 HOH HOH A . I 5 HOH 60 2060 2060 HOH HOH A . I 5 HOH 61 2061 2061 HOH HOH A . I 5 HOH 62 2062 2062 HOH HOH A . I 5 HOH 63 2063 2063 HOH HOH A . I 5 HOH 64 2064 2064 HOH HOH A . I 5 HOH 65 2065 2065 HOH HOH A . I 5 HOH 66 2066 2066 HOH HOH A . I 5 HOH 67 2067 2067 HOH HOH A . I 5 HOH 68 2068 2068 HOH HOH A . I 5 HOH 69 2069 2069 HOH HOH A . I 5 HOH 70 2070 2070 HOH HOH A . I 5 HOH 71 2071 2071 HOH HOH A . I 5 HOH 72 2072 2072 HOH HOH A . I 5 HOH 73 2073 2073 HOH HOH A . I 5 HOH 74 2074 2074 HOH HOH A . I 5 HOH 75 2075 2075 HOH HOH A . I 5 HOH 76 2076 2076 HOH HOH A . I 5 HOH 77 2077 2077 HOH HOH A . I 5 HOH 78 2078 2078 HOH HOH A . I 5 HOH 79 2079 2079 HOH HOH A . I 5 HOH 80 2080 2080 HOH HOH A . I 5 HOH 81 2081 2081 HOH HOH A . I 5 HOH 82 2082 2082 HOH HOH A . I 5 HOH 83 2083 2083 HOH HOH A . I 5 HOH 84 2084 2084 HOH HOH A . I 5 HOH 85 2085 2085 HOH HOH A . I 5 HOH 86 2086 2086 HOH HOH A . I 5 HOH 87 2087 2087 HOH HOH A . I 5 HOH 88 2088 2088 HOH HOH A . I 5 HOH 89 2089 2089 HOH HOH A . I 5 HOH 90 2090 2090 HOH HOH A . I 5 HOH 91 2091 2091 HOH HOH A . I 5 HOH 92 2092 2092 HOH HOH A . I 5 HOH 93 2093 2093 HOH HOH A . I 5 HOH 94 2094 2094 HOH HOH A . I 5 HOH 95 2095 2095 HOH HOH A . I 5 HOH 96 2096 2096 HOH HOH A . I 5 HOH 97 2097 2097 HOH HOH A . I 5 HOH 98 2098 2098 HOH HOH A . I 5 HOH 99 2099 2099 HOH HOH A . I 5 HOH 100 2100 2100 HOH HOH A . I 5 HOH 101 2101 2101 HOH HOH A . I 5 HOH 102 2102 2102 HOH HOH A . I 5 HOH 103 2103 2103 HOH HOH A . I 5 HOH 104 2104 2104 HOH HOH A . I 5 HOH 105 2105 2105 HOH HOH A . I 5 HOH 106 2106 2106 HOH HOH A . I 5 HOH 107 2107 2107 HOH HOH A . I 5 HOH 108 2108 2108 HOH HOH A . I 5 HOH 109 2109 2109 HOH HOH A . I 5 HOH 110 2110 2110 HOH HOH A . I 5 HOH 111 2111 2111 HOH HOH A . I 5 HOH 112 2112 2112 HOH HOH A . I 5 HOH 113 2113 2113 HOH HOH A . I 5 HOH 114 2114 2114 HOH HOH A . I 5 HOH 115 2115 2115 HOH HOH A . I 5 HOH 116 2116 2116 HOH HOH A . I 5 HOH 117 2117 2117 HOH HOH A . I 5 HOH 118 2118 2118 HOH HOH A . I 5 HOH 119 2119 2119 HOH HOH A . I 5 HOH 120 2120 2120 HOH HOH A . I 5 HOH 121 2121 2121 HOH HOH A . I 5 HOH 122 2122 2122 HOH HOH A . I 5 HOH 123 2123 2123 HOH HOH A . I 5 HOH 124 2124 2124 HOH HOH A . I 5 HOH 125 2125 2125 HOH HOH A . I 5 HOH 126 2126 2126 HOH HOH A . I 5 HOH 127 2127 2127 HOH HOH A . I 5 HOH 128 2128 2128 HOH HOH A . I 5 HOH 129 2129 2129 HOH HOH A . I 5 HOH 130 2130 2130 HOH HOH A . I 5 HOH 131 2131 2131 HOH HOH A . I 5 HOH 132 2132 2132 HOH HOH A . I 5 HOH 133 2133 2133 HOH HOH A . I 5 HOH 134 2134 2134 HOH HOH A . I 5 HOH 135 2135 2135 HOH HOH A . I 5 HOH 136 2136 2136 HOH HOH A . I 5 HOH 137 2137 2137 HOH HOH A . I 5 HOH 138 2138 2138 HOH HOH A . I 5 HOH 139 2139 2139 HOH HOH A . I 5 HOH 140 2140 2140 HOH HOH A . I 5 HOH 141 2141 2141 HOH HOH A . I 5 HOH 142 2142 2142 HOH HOH A . I 5 HOH 143 2143 2143 HOH HOH A . I 5 HOH 144 2144 2144 HOH HOH A . I 5 HOH 145 2145 2145 HOH HOH A . I 5 HOH 146 2146 2146 HOH HOH A . J 5 HOH 1 2001 2001 HOH HOH I . J 5 HOH 2 2002 2002 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_002086 _pdbx_molecule_features.name ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002086 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 66 A ASN 91 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 142 A ASN 167 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 247 A ASN 272 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -16.5 ? 1 'SSA (A^2)' 11780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2086 ? I HOH . 2 1 A HOH 2106 ? I HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-10-02 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_database_status.status_code_sf' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.pdbx_role' 9 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 iMOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 4AW9 _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO GLN' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'AC-YVAD-CMK (CHAIN I): AC-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C I ASP 304 ? ? C1 I 0QE 305 ? ? 1.53 2 1 O A TRP 232 ? ? O A HOH 2124 ? ? 1.83 3 1 NH2 A ARG 58 ? ? O3 A SO4 317 ? ? 2.14 4 1 ND2 A ASN 91 ? ? O5 A NAG 312 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 72 ? ? 78.27 33.69 2 1 ASN A 91 ? ? 37.51 35.58 3 1 ASP A 147 ? ? 177.59 -154.06 4 1 ASN A 158 ? ? -119.97 -89.47 5 1 ALA A 188 ? ? 179.40 161.26 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id I _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2002 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.27 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 289 ? A LYS 264 2 1 Y 1 A ALA 290 ? A ALA 265 3 1 Y 1 A SER 291 ? A SER 266 4 1 Y 1 A SER 292 ? A SER 267 5 1 Y 1 A PRO 293 ? A PRO 268 6 1 Y 1 A VAL 294 ? A VAL 269 7 1 Y 1 A PRO 295 ? A PRO 270 8 1 Y 1 A LEU 296 ? A LEU 271 9 1 Y 1 A PRO 297 ? A PRO 272 10 1 Y 1 A PRO 298 ? A PRO 273 11 1 Y 1 A VAL 299 ? A VAL 274 12 1 Y 1 A THR 300 ? A THR 275 13 1 Y 1 A HIS 301 ? A HIS 276 14 1 Y 1 A LEU 302 ? A LEU 277 15 1 Y 1 A ASP 303 ? A ASP 278 16 1 Y 1 A LEU 304 ? A LEU 279 17 1 Y 1 A THR 305 ? A THR 280 18 1 Y 1 A PRO 306 ? A PRO 281 19 1 Y 1 A SER 307 ? A SER 282 20 1 Y 1 A PRO 308 ? A PRO 283 21 1 Y 1 A ASP 309 ? A ASP 284 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'SULFATE ION' SO4 5 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? 'H, K, L' 0.663 2 1 1 ? '-H, K, -L' 0.337 #