data_4AYY # _entry.id 4AYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4AYY PDBE EBI-53011 WWPDB D_1290053011 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4AYV unspecified 'HUMAN THROMBIN - INHIBITOR COMPLEX' PDB 4AZ2 unspecified 'HUMAN THROMBIN - INHIBITOR COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AYY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-06-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Banner, D.W.' 1 ;D'Arcy, A. ; 2 'Winkler, F.K.' 3 'Hilpert, K.' 4 # _citation.id primary _citation.title 'Design and Synthesis of Potent and Highly Selective Thrombin Inhibitors.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 37 _citation.page_first 3889 _citation.page_last ? _citation.year 1994 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7966150 _citation.pdbx_database_id_DOI 10.1021/JM00049A008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hilpert, K.' 1 ? primary 'Ackermann, J.' 2 ? primary 'Banner, D.W.' 3 ? primary 'Gast, A.' 4 ? primary 'Gubernator, K.' 5 ? primary 'Hadvary, P.' 6 ? primary 'Labler, L.' 7 ? primary 'Muller, K.' 8 ? primary 'Schmid, G.' 9 ? primary 'Tschopp, T.B.' 10 ? # _cell.entry_id 4AYY _cell.length_a 90.800 _cell.length_b 90.800 _cell.length_c 132.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AYY _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'THROMBIN LIGHT CHAIN' 3489.881 1 3.4.21.5 ? 'LIGHT CHAIN, RESIDUES 332-361' ? 2 polymer nat 'THROMBIN HEAVY CHAIN' 29594.055 1 3.4.21.5 ? 'HEAVY CHAIN, RESIDUES 364-620' 'ASN B53 IS GLYCOSYLATED' 3 polymer syn "HIRUDIN-3A'" 1411.465 1 ? ? 'C-TERMINUS, RESIDUES 55-65' ? 4 non-polymer syn ;(R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid ; 586.703 1 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 water nat water 18.015 70 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'COAGULATION FACTOR II' 2 'COAGULATION FACTOR II' 3 ;HIRUDIN, HIRUDIN IIIA' ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEADCGLRPLFEKKSLEDKTERELLESYID GEADCGLRPLFEKKSLEDKTERELLESYID A ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQF ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQF ; B ? 3 'polypeptide(L)' no no DFEEIPEEYLQ DFEEIPEEYLQ D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ALA n 1 4 ASP n 1 5 CYS n 1 6 GLY n 1 7 LEU n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 PHE n 1 12 GLU n 1 13 LYS n 1 14 LYS n 1 15 SER n 1 16 LEU n 1 17 GLU n 1 18 ASP n 1 19 LYS n 1 20 THR n 1 21 GLU n 1 22 ARG n 1 23 GLU n 1 24 LEU n 1 25 LEU n 1 26 GLU n 1 27 SER n 1 28 TYR n 1 29 ILE n 1 30 ASP n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 3 1 ASP n 3 2 PHE n 3 3 GLU n 3 4 GLU n 3 5 ILE n 3 6 PRO n 3 7 GLU n 3 8 GLU n 3 9 TYR n 3 10 LEU n 3 11 GLN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? HUMAN 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? HUMAN 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HIRUDO MEDICINALIS' _pdbx_entity_src_syn.organism_common_name 'MEDICINAL LEECH' _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 ? ? P00734 ? 2 UNP THRB_HUMAN 2 ? ? P00734 ? 3 UNP HIR2B_HIRME 3 ? ? P28506 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AYY A 1 ? 30 ? P00734 332 ? 361 ? 5 34 2 2 4AYY B 1 ? 257 ? P00734 364 ? 620 ? 1 257 3 3 4AYY D 1 ? 11 ? P28506 55 ? 65 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9MX non-polymer . ;(R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid ; ? 'C28 H38 N6 O6 S' 586.703 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AYY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.14 _exptl_crystal.density_percent_sol 70.3 _exptl_crystal.description 'SOME DATA PROCESSING INFORMATION HAS BEEN LOST.' _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 15 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'MULTIWIRE XENTRONICS' _diffrn_detector.pdbx_collection_date 1993-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-21' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AYY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.60 _reflns.number_obs 16836 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.49 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 68.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AYY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15541 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.75 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 92.69 _refine.ls_R_factor_obs 0.14917 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14674 _refine.ls_R_factor_R_free 0.19663 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 842 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 38.516 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS GENERATED AT RIDING POSITIONS IN REFMAC BUT NOT OUTPUT. RESIDUES B153 AND B154 HAVE ELECTRON DENSITY WHICH IS HARD TO FIT WITH THE PUBLISHED THROMBIN SEQUENCE. ; _refine.pdbx_starting_model 'IN HOUSE STRUCTURES' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.278 _refine.pdbx_overall_ESU_R_Free 0.217 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2424 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 2550 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 24.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.019 ? 2568 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.363 1.985 ? 3478 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.010 5.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.670 23.577 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.486 15.000 ? 448 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.919 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 358 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1968 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.668 _refine_ls_shell.number_reflns_R_work 651 _refine_ls_shell.R_factor_R_work 0.210 _refine_ls_shell.percent_reflns_obs 53.83 _refine_ls_shell.R_factor_R_free 0.301 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AYY _struct.title 'Human thrombin - inhibitor complex' _struct.pdbx_descriptor ;THROMBIN LIGHT CHAIN (E.C.3.4.21.5), THROMBIN HEAVY CHAIN (E.C.3.4.21.5), HIRUDIN-3A' ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AYY _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR _struct_keywords.text 'HYDROLASE-INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 11 ? SER A 15 ? PHE A 15 SER A 19 5 ? 5 HELX_P HELX_P2 2 THR A 20 ? SER A 27 ? THR A 24 SER A 31 1 ? 8 HELX_P HELX_P3 3 TYR A 28 ? ASP A 30 ? TYR A 32 ASP A 34 5 ? 3 HELX_P HELX_P4 4 ALA B 41 ? CYS B 44 ? ALA B 41 CYS B 44 5 ? 4 HELX_P HELX_P5 5 PRO B 48 ? ASP B 51 ? PRO B 48 ASP B 51 5 ? 4 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP B 122 LEU B 130 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? SER B 176 ? GLU B 169 SER B 176 1 ? 8 HELX_P HELX_P8 8 LYS B 191 ? GLY B 195 ? LYS B 191 GLY B 195 5 ? 5 HELX_P HELX_P9 9 LEU B 246 ? PHE B 257 ? LEU B 246 PHE B 257 1 ? 12 HELX_P HELX_P10 10 PRO C 6 ? LEU C 10 ? PRO D 6 LEU D 10 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 B CYS 119 SG ? ? A CYS 9 B CYS 119 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? B CYS 28 B CYS 44 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? B CYS 173 B CYS 187 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? B CYS 201 B CYS 231 1_555 ? ? ? ? ? ? ? 2.049 ? ? covale1 covale one ? B ASN 53 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 53 B NAG 1259 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation metalc1 metalc ? ? B ARG 233 O ? ? ? 1_555 F NA . NA ? ? B ARG 233 B NA 1260 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc2 metalc ? ? B LYS 236 O ? ? ? 1_555 F NA . NA ? ? B LYS 236 B NA 1260 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc3 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1260 B HOH 2049 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1260 B HOH 2050 1_555 ? ? ? ? ? ? ? 3.110 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1260 B HOH 2054 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1260 B HOH 2061 1_555 ? ? ? ? ? ? ? 2.081 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 22 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 23 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details BA ? 7 ? BB ? 7 ? BC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BA 6 7 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BB 4 5 ? anti-parallel BB 5 6 ? anti-parallel BB 6 7 ? anti-parallel BC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BA 1 SER B 5 ? ASP B 6 ? SER B 5 ASP B 6 BA 2 GLN B 161 ? PRO B 166 ? GLN B 161 PRO B 166 BA 3 LYS B 135 ? GLY B 140 ? LYS B 135 GLY B 140 BA 4 PRO B 208 ? LYS B 212 ? PRO B 208 LYS B 212 BA 5 TRP B 219 ? TRP B 227 ? TRP B 219 TRP B 227 BA 6 GLY B 238 ? HIS B 242 ? GLY B 238 HIS B 242 BA 7 MET B 185 ? ALA B 188 ? MET B 185 ALA B 188 BB 1 GLN B 15 ? ARG B 20 ? GLN B 15 ARG B 20 BB 2 GLU B 25 ? LEU B 32 ? GLU B 25 LEU B 32 BB 3 TRP B 37 ? THR B 40 ? TRP B 37 THR B 40 BB 4 ALA B 101 ? LEU B 105 ? ALA B 101 LEU B 105 BB 5 LYS B 77 ? ILE B 86 ? LYS B 77 ILE B 86 BB 6 LEU B 59 ? ILE B 63 ? LEU B 59 ILE B 63 BB 7 GLN B 15 ? ARG B 20 ? GLN B 15 ARG B 20 BC 1 LEU B 46 ? TYR B 47 ? LEU B 46 TYR B 47 BC 2 LYS B 52 ? ASN B 53 ? LYS B 52 ASN B 53 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id BA 1 2 N SER B 5 ? N SER B 5 O VAL B 162 ? O VAL B 162 BA 2 3 N LEU B 165 ? N LEU B 165 O GLY B 136 ? O GLY B 136 BA 3 4 N THR B 139 ? N THR B 139 O PRO B 208 ? O PRO B 208 BA 4 5 N MET B 211 ? N MET B 211 O TYR B 220 ? O TYR B 220 BA 5 6 N SER B 226 ? N SER B 226 O PHE B 239 ? O PHE B 239 BA 6 7 N TYR B 240 ? N TYR B 240 O PHE B 186 ? O PHE B 186 BB 1 2 N ARG B 20 ? N ARG B 20 O GLU B 25 ? O GLU B 25 BB 2 3 N SER B 31 ? N SER B 31 O LEU B 39 ? O LEU B 39 BB 3 4 N THR B 40 ? N THR B 40 O ALA B 101 ? O ALA B 101 BB 4 5 O LYS B 104 ? O LYS B 104 N GLU B 82 ? N GLU B 82 BB 5 6 N LEU B 81 ? N LEU B 81 O LEU B 59 ? O LEU B 59 BB 6 7 N ARG B 62 ? N ARG B 62 O MET B 17 ? O MET B 17 BC 1 2 N TYR B 47 ? N TYR B 47 O LYS B 52 ? O LYS B 52 # _database_PDB_matrix.entry_id 4AYY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AYY _atom_sites.fract_transf_matrix[1][1] 0.011013 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011013 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 5 5 GLY GLY A . n A 1 2 GLU 2 6 6 GLU GLU A . n A 1 3 ALA 3 7 7 ALA ALA A . n A 1 4 ASP 4 8 8 ASP ASP A . n A 1 5 CYS 5 9 9 CYS CYS A . n A 1 6 GLY 6 10 10 GLY GLY A . n A 1 7 LEU 7 11 11 LEU LEU A . n A 1 8 ARG 8 12 12 ARG ARG A . n A 1 9 PRO 9 13 13 PRO PRO A . n A 1 10 LEU 10 14 14 LEU LEU A . n A 1 11 PHE 11 15 15 PHE PHE A . n A 1 12 GLU 12 16 16 GLU GLU A . n A 1 13 LYS 13 17 17 LYS LYS A . n A 1 14 LYS 14 18 18 LYS LYS A . n A 1 15 SER 15 19 19 SER SER A . n A 1 16 LEU 16 20 20 LEU LEU A . n A 1 17 GLU 17 21 21 GLU GLU A . n A 1 18 ASP 18 22 22 ASP ASP A . n A 1 19 LYS 19 23 23 LYS LYS A . n A 1 20 THR 20 24 24 THR THR A . n A 1 21 GLU 21 25 25 GLU GLU A . n A 1 22 ARG 22 26 26 ARG ARG A . n A 1 23 GLU 23 27 27 GLU GLU A . n A 1 24 LEU 24 28 28 LEU LEU A . n A 1 25 LEU 25 29 29 LEU LEU A . n A 1 26 GLU 26 30 30 GLU GLU A . n A 1 27 SER 27 31 31 SER SER A . n A 1 28 TYR 28 32 32 TYR TYR A . n A 1 29 ILE 29 33 33 ILE ILE A . n A 1 30 ASP 30 34 34 ASP ASP A . n B 2 1 ILE 1 1 1 ILE ILE B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLU 3 3 3 GLU GLU B . n B 2 4 GLY 4 4 4 GLY GLY B . n B 2 5 SER 5 5 5 SER SER B . n B 2 6 ASP 6 6 6 ASP ASP B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 GLU 8 8 8 GLU GLU B . n B 2 9 ILE 9 9 9 ILE ILE B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 MET 11 11 11 MET MET B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 PRO 13 13 13 PRO PRO B . n B 2 14 TRP 14 14 14 TRP TRP B . n B 2 15 GLN 15 15 15 GLN GLN B . n B 2 16 VAL 16 16 16 VAL VAL B . n B 2 17 MET 17 17 17 MET MET B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 PHE 19 19 19 PHE PHE B . n B 2 20 ARG 20 20 20 ARG ARG B . n B 2 21 LYS 21 21 21 LYS LYS B . n B 2 22 SER 22 22 22 SER SER B . n B 2 23 PRO 23 23 23 PRO PRO B . n B 2 24 GLN 24 24 24 GLN GLN B . n B 2 25 GLU 25 25 25 GLU GLU B . n B 2 26 LEU 26 26 26 LEU LEU B . n B 2 27 LEU 27 27 27 LEU LEU B . n B 2 28 CYS 28 28 28 CYS CYS B . n B 2 29 GLY 29 29 29 GLY GLY B . n B 2 30 ALA 30 30 30 ALA ALA B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 LEU 32 32 32 LEU LEU B . n B 2 33 ILE 33 33 33 ILE ILE B . n B 2 34 SER 34 34 34 SER SER B . n B 2 35 ASP 35 35 35 ASP ASP B . n B 2 36 ARG 36 36 36 ARG ARG B . n B 2 37 TRP 37 37 37 TRP TRP B . n B 2 38 VAL 38 38 38 VAL VAL B . n B 2 39 LEU 39 39 39 LEU LEU B . n B 2 40 THR 40 40 40 THR THR B . n B 2 41 ALA 41 41 41 ALA ALA B . n B 2 42 ALA 42 42 42 ALA ALA B . n B 2 43 HIS 43 43 43 HIS HIS B . n B 2 44 CYS 44 44 44 CYS CYS B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 LEU 46 46 46 LEU LEU B . n B 2 47 TYR 47 47 47 TYR TYR B . n B 2 48 PRO 48 48 48 PRO PRO B . n B 2 49 PRO 49 49 49 PRO PRO B . n B 2 50 TRP 50 50 50 TRP TRP B . n B 2 51 ASP 51 51 51 ASP ASP B . n B 2 52 LYS 52 52 52 LYS LYS B . n B 2 53 ASN 53 53 53 ASN ASN B . n B 2 54 PHE 54 54 54 PHE PHE B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 GLU 56 56 56 GLU GLU B . n B 2 57 ASN 57 57 57 ASN ASN B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 LEU 59 59 59 LEU LEU B . n B 2 60 LEU 60 60 60 LEU LEU B . n B 2 61 VAL 61 61 61 VAL VAL B . n B 2 62 ARG 62 62 62 ARG ARG B . n B 2 63 ILE 63 63 63 ILE ILE B . n B 2 64 GLY 64 64 64 GLY GLY B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 HIS 66 66 66 HIS HIS B . n B 2 67 SER 67 67 67 SER SER B . n B 2 68 ARG 68 68 68 ARG ARG B . n B 2 69 THR 69 69 69 THR THR B . n B 2 70 ARG 70 70 70 ARG ARG B . n B 2 71 TYR 71 71 71 TYR TYR B . n B 2 72 GLU 72 72 72 GLU GLU B . n B 2 73 ARG 73 73 73 ARG ARG B . n B 2 74 ASN 74 74 74 ASN ASN B . n B 2 75 ILE 75 75 75 ILE ILE B . n B 2 76 GLU 76 76 76 GLU GLU B . n B 2 77 LYS 77 77 77 LYS LYS B . n B 2 78 ILE 78 78 78 ILE ILE B . n B 2 79 SER 79 79 79 SER SER B . n B 2 80 MET 80 80 80 MET MET B . n B 2 81 LEU 81 81 81 LEU LEU B . n B 2 82 GLU 82 82 82 GLU GLU B . n B 2 83 LYS 83 83 83 LYS LYS B . n B 2 84 ILE 84 84 84 ILE ILE B . n B 2 85 TYR 85 85 85 TYR TYR B . n B 2 86 ILE 86 86 86 ILE ILE B . n B 2 87 HIS 87 87 87 HIS HIS B . n B 2 88 PRO 88 88 88 PRO PRO B . n B 2 89 ARG 89 89 89 ARG ARG B . n B 2 90 TYR 90 90 90 TYR TYR B . n B 2 91 ASN 91 91 91 ASN ASN B . n B 2 92 TRP 92 92 92 TRP TRP B . n B 2 93 ARG 93 93 93 ARG ARG B . n B 2 94 GLU 94 94 94 GLU GLU B . n B 2 95 ASN 95 95 95 ASN ASN B . n B 2 96 LEU 96 96 96 LEU LEU B . n B 2 97 ASP 97 97 97 ASP ASP B . n B 2 98 ARG 98 98 98 ARG ARG B . n B 2 99 ASP 99 99 99 ASP ASP B . n B 2 100 ILE 100 100 100 ILE ILE B . n B 2 101 ALA 101 101 101 ALA ALA B . n B 2 102 LEU 102 102 102 LEU LEU B . n B 2 103 MET 103 103 103 MET MET B . n B 2 104 LYS 104 104 104 LYS LYS B . n B 2 105 LEU 105 105 105 LEU LEU B . n B 2 106 LYS 106 106 106 LYS LYS B . n B 2 107 LYS 107 107 107 LYS LYS B . n B 2 108 PRO 108 108 108 PRO PRO B . n B 2 109 VAL 109 109 109 VAL VAL B . n B 2 110 ALA 110 110 110 ALA ALA B . n B 2 111 PHE 111 111 111 PHE PHE B . n B 2 112 SER 112 112 112 SER SER B . n B 2 113 ASP 113 113 113 ASP ASP B . n B 2 114 TYR 114 114 114 TYR TYR B . n B 2 115 ILE 115 115 115 ILE ILE B . n B 2 116 HIS 116 116 116 HIS HIS B . n B 2 117 PRO 117 117 117 PRO PRO B . n B 2 118 VAL 118 118 118 VAL VAL B . n B 2 119 CYS 119 119 119 CYS CYS B . n B 2 120 LEU 120 120 120 LEU LEU B . n B 2 121 PRO 121 121 121 PRO PRO B . n B 2 122 ASP 122 122 122 ASP ASP B . n B 2 123 ARG 123 123 123 ARG ARG B . n B 2 124 GLU 124 124 124 GLU GLU B . n B 2 125 THR 125 125 125 THR THR B . n B 2 126 ALA 126 126 126 ALA ALA B . n B 2 127 ALA 127 127 127 ALA ALA B . n B 2 128 SER 128 128 128 SER SER B . n B 2 129 LEU 129 129 129 LEU LEU B . n B 2 130 LEU 130 130 130 LEU LEU B . n B 2 131 GLN 131 131 131 GLN GLN B . n B 2 132 ALA 132 132 132 ALA ALA B . n B 2 133 GLY 133 133 133 GLY GLY B . n B 2 134 TYR 134 134 134 TYR TYR B . n B 2 135 LYS 135 135 135 LYS LYS B . n B 2 136 GLY 136 136 136 GLY GLY B . n B 2 137 ARG 137 137 137 ARG ARG B . n B 2 138 VAL 138 138 138 VAL VAL B . n B 2 139 THR 139 139 139 THR THR B . n B 2 140 GLY 140 140 140 GLY GLY B . n B 2 141 TRP 141 141 141 TRP TRP B . n B 2 142 GLY 142 142 142 GLY GLY B . n B 2 143 ASN 143 143 143 ASN ASN B . n B 2 144 LEU 144 144 144 LEU LEU B . n B 2 145 LYS 145 145 145 LYS LYS B . n B 2 146 GLU 146 146 146 GLU GLU B . n B 2 147 THR 147 147 147 THR THR B . n B 2 148 TRP 148 148 148 TRP TRP B . n B 2 149 THR 149 149 149 THR THR B . n B 2 150 ALA 150 150 150 ALA ALA B . n B 2 151 ASN 151 151 151 ASN ASN B . n B 2 152 VAL 152 152 152 VAL VAL B . n B 2 153 GLY 153 153 153 GLY GLY B . n B 2 154 LYS 154 154 154 LYS LYS B . n B 2 155 GLY 155 155 155 GLY GLY B . n B 2 156 GLN 156 156 156 GLN GLN B . n B 2 157 PRO 157 157 157 PRO PRO B . n B 2 158 SER 158 158 158 SER SER B . n B 2 159 VAL 159 159 159 VAL VAL B . n B 2 160 LEU 160 160 160 LEU LEU B . n B 2 161 GLN 161 161 161 GLN GLN B . n B 2 162 VAL 162 162 162 VAL VAL B . n B 2 163 VAL 163 163 163 VAL VAL B . n B 2 164 ASN 164 164 164 ASN ASN B . n B 2 165 LEU 165 165 165 LEU LEU B . n B 2 166 PRO 166 166 166 PRO PRO B . n B 2 167 ILE 167 167 167 ILE ILE B . n B 2 168 VAL 168 168 168 VAL VAL B . n B 2 169 GLU 169 169 169 GLU GLU B . n B 2 170 ARG 170 170 170 ARG ARG B . n B 2 171 PRO 171 171 171 PRO PRO B . n B 2 172 VAL 172 172 172 VAL VAL B . n B 2 173 CYS 173 173 173 CYS CYS B . n B 2 174 LYS 174 174 174 LYS LYS B . n B 2 175 ASP 175 175 175 ASP ASP B . n B 2 176 SER 176 176 176 SER SER B . n B 2 177 THR 177 177 177 THR THR B . n B 2 178 ARG 178 178 178 ARG ARG B . n B 2 179 ILE 179 179 179 ILE ILE B . n B 2 180 ARG 180 180 180 ARG ARG B . n B 2 181 ILE 181 181 181 ILE ILE B . n B 2 182 THR 182 182 182 THR THR B . n B 2 183 ASP 183 183 183 ASP ASP B . n B 2 184 ASN 184 184 184 ASN ASN B . n B 2 185 MET 185 185 185 MET MET B . n B 2 186 PHE 186 186 186 PHE PHE B . n B 2 187 CYS 187 187 187 CYS CYS B . n B 2 188 ALA 188 188 188 ALA ALA B . n B 2 189 GLY 189 189 189 GLY GLY B . n B 2 190 TYR 190 190 190 TYR TYR B . n B 2 191 LYS 191 191 191 LYS LYS B . n B 2 192 PRO 192 192 192 PRO PRO B . n B 2 193 ASP 193 193 193 ASP ASP B . n B 2 194 GLU 194 194 194 GLU GLU B . n B 2 195 GLY 195 195 195 GLY GLY B . n B 2 196 LYS 196 196 196 LYS LYS B . n B 2 197 ARG 197 197 197 ARG ARG B . n B 2 198 GLY 198 198 198 GLY GLY B . n B 2 199 ASP 199 199 199 ASP ASP B . n B 2 200 ALA 200 200 200 ALA ALA B . n B 2 201 CYS 201 201 201 CYS CYS B . n B 2 202 GLU 202 202 202 GLU GLU B . n B 2 203 GLY 203 203 203 GLY GLY B . n B 2 204 ASP 204 204 204 ASP ASP B . n B 2 205 SER 205 205 205 SER SER B . n B 2 206 GLY 206 206 206 GLY GLY B . n B 2 207 GLY 207 207 207 GLY GLY B . n B 2 208 PRO 208 208 208 PRO PRO B . n B 2 209 PHE 209 209 209 PHE PHE B . n B 2 210 VAL 210 210 210 VAL VAL B . n B 2 211 MET 211 211 211 MET MET B . n B 2 212 LYS 212 212 212 LYS LYS B . n B 2 213 SER 213 213 213 SER SER B . n B 2 214 PRO 214 214 214 PRO PRO B . n B 2 215 PHE 215 215 215 PHE PHE B . n B 2 216 ASN 216 216 216 ASN ASN B . n B 2 217 ASN 217 217 217 ASN ASN B . n B 2 218 ARG 218 218 218 ARG ARG B . n B 2 219 TRP 219 219 219 TRP TRP B . n B 2 220 TYR 220 220 220 TYR TYR B . n B 2 221 GLN 221 221 221 GLN GLN B . n B 2 222 MET 222 222 222 MET MET B . n B 2 223 GLY 223 223 223 GLY GLY B . n B 2 224 ILE 224 224 224 ILE ILE B . n B 2 225 VAL 225 225 225 VAL VAL B . n B 2 226 SER 226 226 226 SER SER B . n B 2 227 TRP 227 227 227 TRP TRP B . n B 2 228 GLY 228 228 228 GLY GLY B . n B 2 229 GLU 229 229 229 GLU GLU B . n B 2 230 GLY 230 230 230 GLY GLY B . n B 2 231 CYS 231 231 231 CYS CYS B . n B 2 232 ASP 232 232 232 ASP ASP B . n B 2 233 ARG 233 233 233 ARG ARG B . n B 2 234 ASP 234 234 234 ASP ASP B . n B 2 235 GLY 235 235 235 GLY GLY B . n B 2 236 LYS 236 236 236 LYS LYS B . n B 2 237 TYR 237 237 237 TYR TYR B . n B 2 238 GLY 238 238 238 GLY GLY B . n B 2 239 PHE 239 239 239 PHE PHE B . n B 2 240 TYR 240 240 240 TYR TYR B . n B 2 241 THR 241 241 241 THR THR B . n B 2 242 HIS 242 242 242 HIS HIS B . n B 2 243 VAL 243 243 243 VAL VAL B . n B 2 244 PHE 244 244 244 PHE PHE B . n B 2 245 ARG 245 245 245 ARG ARG B . n B 2 246 LEU 246 246 246 LEU LEU B . n B 2 247 LYS 247 247 247 LYS LYS B . n B 2 248 LYS 248 248 248 LYS LYS B . n B 2 249 TRP 249 249 249 TRP TRP B . n B 2 250 ILE 250 250 250 ILE ILE B . n B 2 251 GLN 251 251 251 GLN GLN B . n B 2 252 LYS 252 252 252 LYS LYS B . n B 2 253 VAL 253 253 253 VAL VAL B . n B 2 254 ILE 254 254 254 ILE ILE B . n B 2 255 ASP 255 255 255 ASP ASP B . n B 2 256 GLN 256 256 256 GLN GLN B . n B 2 257 PHE 257 257 257 PHE PHE B . n C 3 1 ASP 1 1 1 ASP ASP D . n C 3 2 PHE 2 2 2 PHE PHE D . n C 3 3 GLU 3 3 3 GLU GLU D . n C 3 4 GLU 4 4 4 GLU GLU D . n C 3 5 ILE 5 5 5 ILE ILE D . n C 3 6 PRO 6 6 6 PRO PRO D . n C 3 7 GLU 7 7 7 GLU GLU D . n C 3 8 GLU 8 8 8 GLU GLU D . n C 3 9 TYR 9 9 9 TYR TYR D . n C 3 10 LEU 10 10 10 LEU LEU D . n C 3 11 GLN 11 11 11 GLN GLN D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 9MX 1 1258 1258 9MX 9MX B . E 5 NAG 1 1259 1259 NAG NAG B . F 6 NA 1 1260 1260 NA NA B . G 7 HOH 1 2001 2001 HOH HOH A . G 7 HOH 2 2002 2002 HOH HOH A . G 7 HOH 3 2003 2003 HOH HOH A . G 7 HOH 4 2004 2004 HOH HOH A . G 7 HOH 5 2005 2005 HOH HOH A . G 7 HOH 6 2006 2006 HOH HOH A . G 7 HOH 7 2007 2007 HOH HOH A . H 7 HOH 1 2001 2001 HOH HOH B . H 7 HOH 2 2002 2002 HOH HOH B . H 7 HOH 3 2003 2003 HOH HOH B . H 7 HOH 4 2004 2004 HOH HOH B . H 7 HOH 5 2005 2005 HOH HOH B . H 7 HOH 6 2006 2006 HOH HOH B . H 7 HOH 7 2007 2007 HOH HOH B . H 7 HOH 8 2008 2008 HOH HOH B . H 7 HOH 9 2009 2009 HOH HOH B . H 7 HOH 10 2010 2010 HOH HOH B . H 7 HOH 11 2011 2011 HOH HOH B . H 7 HOH 12 2012 2012 HOH HOH B . H 7 HOH 13 2013 2013 HOH HOH B . H 7 HOH 14 2014 2014 HOH HOH B . H 7 HOH 15 2015 2015 HOH HOH B . H 7 HOH 16 2016 2016 HOH HOH B . H 7 HOH 17 2017 2017 HOH HOH B . H 7 HOH 18 2018 2018 HOH HOH B . H 7 HOH 19 2019 2019 HOH HOH B . H 7 HOH 20 2020 2020 HOH HOH B . H 7 HOH 21 2021 2021 HOH HOH B . H 7 HOH 22 2022 2022 HOH HOH B . H 7 HOH 23 2023 2023 HOH HOH B . H 7 HOH 24 2024 2024 HOH HOH B . H 7 HOH 25 2025 2025 HOH HOH B . H 7 HOH 26 2026 2026 HOH HOH B . H 7 HOH 27 2027 2027 HOH HOH B . H 7 HOH 28 2028 2028 HOH HOH B . H 7 HOH 29 2029 2029 HOH HOH B . H 7 HOH 30 2030 2030 HOH HOH B . H 7 HOH 31 2031 2031 HOH HOH B . H 7 HOH 32 2032 2032 HOH HOH B . H 7 HOH 33 2033 2033 HOH HOH B . H 7 HOH 34 2034 2034 HOH HOH B . H 7 HOH 35 2035 2035 HOH HOH B . H 7 HOH 36 2036 2036 HOH HOH B . H 7 HOH 37 2037 2037 HOH HOH B . H 7 HOH 38 2038 2038 HOH HOH B . H 7 HOH 39 2039 2039 HOH HOH B . H 7 HOH 40 2040 2040 HOH HOH B . H 7 HOH 41 2041 2041 HOH HOH B . H 7 HOH 42 2042 2042 HOH HOH B . H 7 HOH 43 2043 2043 HOH HOH B . H 7 HOH 44 2044 2044 HOH HOH B . H 7 HOH 45 2045 2045 HOH HOH B . H 7 HOH 46 2046 2046 HOH HOH B . H 7 HOH 47 2047 2047 HOH HOH B . H 7 HOH 48 2048 2048 HOH HOH B . H 7 HOH 49 2049 2049 HOH HOH B . H 7 HOH 50 2050 2050 HOH HOH B . H 7 HOH 51 2051 2051 HOH HOH B . H 7 HOH 52 2052 2052 HOH HOH B . H 7 HOH 53 2053 2053 HOH HOH B . H 7 HOH 54 2054 2054 HOH HOH B . H 7 HOH 55 2055 2055 HOH HOH B . H 7 HOH 56 2056 2056 HOH HOH B . H 7 HOH 57 2057 2057 HOH HOH B . H 7 HOH 58 2058 2058 HOH HOH B . H 7 HOH 59 2059 2059 HOH HOH B . H 7 HOH 60 2060 2060 HOH HOH B . H 7 HOH 61 2061 2061 HOH HOH B . I 7 HOH 1 2001 2001 HOH HOH D . I 7 HOH 2 2002 2002 HOH HOH D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 53 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3700 ? 1 MORE -26.6 ? 1 'SSA (A^2)' 14370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ARG 233 ? B ARG 233 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? B LYS 236 ? B LYS 236 ? 1_555 92.9 ? 2 O ? B ARG 233 ? B ARG 233 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2049 ? 1_555 150.9 ? 3 O ? B LYS 236 ? B LYS 236 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2049 ? 1_555 71.3 ? 4 O ? B ARG 233 ? B ARG 233 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2050 ? 1_555 76.7 ? 5 O ? B LYS 236 ? B LYS 236 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2050 ? 1_555 83.0 ? 6 O ? H HOH . ? B HOH 2049 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2050 ? 1_555 77.2 ? 7 O ? B ARG 233 ? B ARG 233 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2054 ? 1_555 92.1 ? 8 O ? B LYS 236 ? B LYS 236 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2054 ? 1_555 78.7 ? 9 O ? H HOH . ? B HOH 2049 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2054 ? 1_555 107.9 ? 10 O ? H HOH . ? B HOH 2050 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2054 ? 1_555 157.9 ? 11 O ? B ARG 233 ? B ARG 233 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2061 ? 1_555 97.5 ? 12 O ? B LYS 236 ? B LYS 236 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2061 ? 1_555 166.0 ? 13 O ? H HOH . ? B HOH 2049 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2061 ? 1_555 95.2 ? 14 O ? H HOH . ? B HOH 2050 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2061 ? 1_555 90.5 ? 15 O ? H HOH . ? B HOH 2054 ? 1_555 NA ? F NA . ? B NA 1260 ? 1_555 O ? H HOH . ? B HOH 2061 ? 1_555 110.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-15 2 'Structure model' 1 1 2013-08-07 3 'Structure model' 1 2 2017-06-28 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_wavelength_list' 2 3 'Structure model' '_diffrn_source.type' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_pdbx_entity_nonpoly.name' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.value' 19 4 'Structure model' '_struct_conn.pdbx_dist_value' 20 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 4 'Structure model' '_struct_conn.pdbx_role' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.7.0025 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XDS 'data scaling' . ? 3 ? ? ? ? AMoRE phasing . ? 4 ? ? ? ? # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 4AYY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE N-TERMINAL RESIDUE IS MODIFIED IN CHAIN D. PLEASE REFER TO THE CITATION FOR FURTHER DETAILS. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 15 ? ? -124.84 -87.95 2 1 ILE A 33 ? ? -115.29 55.37 3 1 ASN B 53 ? ? -154.47 78.91 4 1 SER B 112 ? ? -163.42 -167.15 5 1 VAL B 152 ? ? -132.73 -69.86 6 1 LYS B 154 ? ? -66.76 -70.02 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;(R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid ; 9MX 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 'SODIUM ION' NA 7 water HOH #