HEADER IMMUNE SYSTEM 03-AUG-12 4B5E TITLE CRYSTAL STRUCTURE OF AN AMYLOID-BETA BINDING SINGLE CHAIN ANTIBODY TITLE 2 PS2-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PS2-8; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TG1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMEK220 KEYWDS IMMUNE SYSTEM, VHH, ALZHEIMER'S DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR D.X.BERINGER,B.DORRESTEIJN,L.RUTTEN,H.WIENK,M.EL KHATTABI, AUTHOR 2 L.M.J.KROON-BATENBURG,C.T.VERRIPS REVDAT 4 20-DEC-23 4B5E 1 REMARK REVDAT 3 08-MAY-19 4B5E 1 REMARK REVDAT 2 19-APR-17 4B5E 1 REMARK REVDAT 1 21-AUG-13 4B5E 0 JRNL AUTH D.X.BERINGER,B.DORRESTEIJN,L.RUTTEN,H.WIENK,M.EL KHATTABI, JRNL AUTH 2 L.M.J.KROON-BATENBURG,C.T.VERRIPS JRNL TITL AMYLOID-BETA BINDING SINGLE CHAIN ANTIBODY PS2-8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 27693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3256 - 4.1710 1.00 2656 144 0.1679 0.1998 REMARK 3 2 4.1710 - 3.3109 1.00 2684 146 0.1498 0.1807 REMARK 3 3 3.3109 - 2.8925 1.00 2660 139 0.1725 0.2055 REMARK 3 4 2.8925 - 2.6281 1.00 2676 143 0.1853 0.3139 REMARK 3 5 2.6281 - 2.4397 0.99 2629 138 0.2030 0.2846 REMARK 3 6 2.4397 - 2.2959 1.00 2681 140 0.1982 0.2911 REMARK 3 7 2.2959 - 2.1809 0.98 2636 140 0.2011 0.2451 REMARK 3 8 2.1809 - 2.0860 1.00 2644 137 0.2093 0.2811 REMARK 3 9 2.0860 - 2.0057 0.97 2619 138 0.2222 0.3050 REMARK 3 10 2.0057 - 1.9365 0.90 2416 127 0.2355 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.00 REMARK 3 B_SOL : 0.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2001 REMARK 3 ANGLE : 1.221 2701 REMARK 3 CHIRALITY : 0.077 282 REMARK 3 PLANARITY : 0.006 357 REMARK 3 DIHEDRAL : 11.840 721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3369 -5.4148 -17.6448 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1981 REMARK 3 T33: 0.3705 T12: -0.0483 REMARK 3 T13: 0.0722 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 1.6681 L22: 3.8432 REMARK 3 L33: 8.2546 L12: -0.8637 REMARK 3 L13: 0.3169 L23: 1.6964 REMARK 3 S TENSOR REMARK 3 S11: 0.2475 S12: -0.3979 S13: -0.5470 REMARK 3 S21: 0.4280 S22: 0.2179 S23: 0.5357 REMARK 3 S31: 0.7952 S32: -1.3966 S33: -0.3562 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9420 -5.7200 -30.4381 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.2227 REMARK 3 T33: 0.2455 T12: 0.0791 REMARK 3 T13: -0.0335 T23: -0.1035 REMARK 3 L TENSOR REMARK 3 L11: 3.4287 L22: 6.0381 REMARK 3 L33: 2.0821 L12: -0.8500 REMARK 3 L13: 2.8247 L23: 2.3386 REMARK 3 S TENSOR REMARK 3 S11: 0.4358 S12: 0.4714 S13: -0.3274 REMARK 3 S21: -0.5919 S22: -0.1726 S23: 0.1731 REMARK 3 S31: 0.7707 S32: 0.2472 S33: -0.3666 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 33 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8025 6.5456 -21.5503 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1636 REMARK 3 T33: 0.1911 T12: 0.0114 REMARK 3 T13: 0.0062 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.9674 L22: 0.9367 REMARK 3 L33: 4.8822 L12: 0.2102 REMARK 3 L13: -2.8414 L23: 0.3573 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.1771 S13: 0.4024 REMARK 3 S21: 0.1123 S22: -0.1235 S23: 0.1041 REMARK 3 S31: -0.1453 S32: -0.3461 S33: -0.0507 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 53 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1474 6.5635 -24.2301 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.2020 REMARK 3 T33: 0.1815 T12: 0.0067 REMARK 3 T13: 0.0140 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.3774 L22: 2.7211 REMARK 3 L33: 4.7367 L12: 0.9976 REMARK 3 L13: -0.8850 L23: 1.4725 REMARK 3 S TENSOR REMARK 3 S11: 0.1361 S12: 0.0136 S13: 0.1416 REMARK 3 S21: -0.0603 S22: 0.0438 S23: -0.0620 REMARK 3 S31: -0.2722 S32: 0.3565 S33: -0.2512 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 68 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2744 -5.5159 -26.5050 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.2584 REMARK 3 T33: 0.1926 T12: 0.0268 REMARK 3 T13: -0.0043 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.6174 L22: 3.7007 REMARK 3 L33: 5.4133 L12: 0.1743 REMARK 3 L13: -1.3342 L23: 2.9781 REMARK 3 S TENSOR REMARK 3 S11: 0.1012 S12: -0.0379 S13: -0.2633 REMARK 3 S21: -0.0154 S22: 0.1278 S23: -0.2636 REMARK 3 S31: 0.0722 S32: 0.3724 S33: -0.0955 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 77 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8832 -5.7309 -24.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.1947 REMARK 3 T33: 0.2628 T12: 0.0434 REMARK 3 T13: 0.0077 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.6891 L22: 5.4763 REMARK 3 L33: 9.6455 L12: 1.1085 REMARK 3 L13: -0.7005 L23: 5.6480 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.1976 S13: -0.2827 REMARK 3 S21: 0.3081 S22: 0.2673 S23: -0.2024 REMARK 3 S31: 0.6658 S32: 0.8309 S33: -0.0813 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 84 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1119 2.3981 -15.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1398 REMARK 3 T33: 0.2144 T12: -0.0098 REMARK 3 T13: 0.0249 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.1115 L22: 1.7098 REMARK 3 L33: 5.0763 L12: 0.6315 REMARK 3 L13: -0.7682 L23: 0.4273 REMARK 3 S TENSOR REMARK 3 S11: 0.2001 S12: -0.2508 S13: 0.0006 REMARK 3 S21: 0.3197 S22: -0.0927 S23: 0.0689 REMARK 3 S31: 0.1953 S32: -0.1095 S33: 0.0258 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 100 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4852 5.9092 -26.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1006 REMARK 3 T33: 0.2045 T12: 0.0362 REMARK 3 T13: 0.0141 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.7381 L22: 2.6353 REMARK 3 L33: 9.0816 L12: 0.8026 REMARK 3 L13: 0.2360 L23: -0.9542 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.2753 S13: 0.1273 REMARK 3 S21: -0.0208 S22: 0.0075 S23: 0.1331 REMARK 3 S31: 0.0491 S32: -0.0782 S33: 0.0647 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2739 -3.1727 0.9828 REMARK 3 T TENSOR REMARK 3 T11: 0.4321 T22: 0.3771 REMARK 3 T33: 0.2130 T12: 0.0621 REMARK 3 T13: -0.0671 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 3.2579 L22: 6.3398 REMARK 3 L33: 7.5699 L12: -3.1434 REMARK 3 L13: 2.7697 L23: -6.5554 REMARK 3 S TENSOR REMARK 3 S11: 0.7804 S12: 0.2650 S13: -0.3842 REMARK 3 S21: -1.5131 S22: -0.4183 S23: 0.1795 REMARK 3 S31: 1.2346 S32: 0.9350 S33: -0.1184 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 18 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9973 -6.7398 2.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.5171 T22: 0.3024 REMARK 3 T33: 0.3256 T12: 0.0845 REMARK 3 T13: -0.1773 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 6.3996 L22: 9.9751 REMARK 3 L33: 2.1725 L12: -6.0818 REMARK 3 L13: 5.2078 L23: -8.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.7459 S12: 0.2193 S13: -0.8316 REMARK 3 S21: -1.1985 S22: 0.2633 S23: 0.9322 REMARK 3 S31: 1.2200 S32: 0.4229 S33: -0.9902 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 26 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8695 -9.9134 13.5434 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.1866 REMARK 3 T33: 0.1537 T12: 0.0071 REMARK 3 T13: -0.0469 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.8205 L22: 8.4902 REMARK 3 L33: 2.8273 L12: 3.0152 REMARK 3 L13: -0.7516 L23: 0.0658 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.0679 S13: -0.3944 REMARK 3 S21: -0.0335 S22: 0.2227 S23: 0.4626 REMARK 3 S31: 0.4262 S32: -0.0515 S33: -0.1956 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 40 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6980 4.3557 12.7947 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.3216 REMARK 3 T33: 0.3254 T12: 0.0213 REMARK 3 T13: 0.0140 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 8.3235 L22: 9.8698 REMARK 3 L33: 8.3547 L12: 8.6138 REMARK 3 L13: -6.7634 L23: -5.9210 REMARK 3 S TENSOR REMARK 3 S11: 0.7650 S12: -1.1870 S13: -0.1728 REMARK 3 S21: 0.4963 S22: -0.6362 S23: -0.4662 REMARK 3 S31: -0.5917 S32: 0.8766 S33: -0.2369 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESID 53 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1609 -2.0347 14.2373 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.2627 REMARK 3 T33: 0.3821 T12: 0.0121 REMARK 3 T13: 0.0217 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 6.1860 L22: 8.2219 REMARK 3 L33: 5.0189 L12: 4.7149 REMARK 3 L13: -0.7970 L23: -3.4523 REMARK 3 S TENSOR REMARK 3 S11: 0.4853 S12: -0.4814 S13: -0.0853 REMARK 3 S21: 0.3588 S22: -0.1687 S23: 1.1624 REMARK 3 S31: -0.2447 S32: -0.3914 S33: -0.3749 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESID 68 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7784 -8.5518 7.0681 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.2749 REMARK 3 T33: 0.4433 T12: 0.0021 REMARK 3 T13: -0.0917 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 7.6113 L22: 5.2830 REMARK 3 L33: 6.6172 L12: 4.5192 REMARK 3 L13: -0.9248 L23: -4.4973 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.6409 S13: -1.1790 REMARK 3 S21: -0.7917 S22: 0.3264 S23: -0.0466 REMARK 3 S31: 0.7951 S32: -0.1405 S33: -0.1720 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESID 77 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2023 -8.0098 4.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.3826 REMARK 3 T33: 0.4583 T12: -0.0868 REMARK 3 T13: -0.1991 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.0350 L22: 2.0313 REMARK 3 L33: 5.0059 L12: -8.8690 REMARK 3 L13: -1.9520 L23: -4.7172 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0774 S13: -1.4265 REMARK 3 S21: -2.2055 S22: 0.8560 S23: 1.8446 REMARK 3 S31: 1.0119 S32: -0.6135 S33: -0.7560 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESID 84 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6383 4.8790 4.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1544 REMARK 3 T33: 0.2069 T12: -0.0057 REMARK 3 T13: 0.0399 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 5.8577 L22: 7.7745 REMARK 3 L33: 9.7244 L12: 1.2237 REMARK 3 L13: 1.8088 L23: -6.6818 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: 0.1900 S13: 0.4337 REMARK 3 S21: -0.0201 S22: -0.2558 S23: 0.1459 REMARK 3 S31: -0.4014 S32: 0.3951 S33: 0.1363 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN B AND (RESID 100 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7909 -2.9820 21.7142 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.3358 REMARK 3 T33: 0.1897 T12: 0.0179 REMARK 3 T13: -0.0266 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 8.4498 L22: 5.0580 REMARK 3 L33: 3.7243 L12: 4.0624 REMARK 3 L13: -0.3928 L23: 0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.2530 S12: 0.1144 S13: -0.3287 REMARK 3 S21: 0.6364 S22: 0.0573 S23: -0.0246 REMARK 3 S31: -0.2564 S32: -0.0627 S33: -0.3387 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN B AND (RESID 114 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9326 -1.6678 7.3614 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.1794 REMARK 3 T33: 0.1993 T12: 0.0230 REMARK 3 T13: -0.0509 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 5.0838 L22: 2.9242 REMARK 3 L33: 9.5086 L12: 0.5940 REMARK 3 L13: -0.2733 L23: -8.3776 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.2531 S13: -0.2937 REMARK 3 S21: -0.0665 S22: -0.2752 S23: -0.3142 REMARK 3 S31: -0.0216 S32: 0.4546 S33: 0.1414 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 44.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B41 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M REMARK 280 NACITRATE PH 5.2, 26-28% PEGME5,000 TEMP 18 C, PH 6.5, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.32350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.81750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.60450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.81750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.32350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.60450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 2 CG1 CG2 REMARK 470 SER A 127 OG REMARK 470 GLU B 1 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2040 O HOH A 2043 2.00 REMARK 500 O HOH B 2016 O HOH B 2041 2.15 REMARK 500 O HOH A 2011 O HOH A 2036 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -143.06 -113.09 REMARK 500 ARG A 67 -50.06 -123.46 REMARK 500 ALA A 92 170.34 178.16 REMARK 500 ASP B 32 -147.01 -125.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1131 DBREF 4B5E A 1 127 PDB 4B5E 4B5E 1 127 DBREF 4B5E B 1 127 PDB 4B5E 4B5E 1 127 SEQRES 1 A 127 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 127 ARG SER PHE SER ARG ASP ALA MET GLY TRP PHE ARG GLN SEQRES 4 A 127 ALA PRO GLY LYS GLU ARG ASP VAL VAL ALA ALA ILE ASN SEQRES 5 A 127 LEU ASN GLY GLY ARG THR TYR SER ALA ASP SER VAL LYS SEQRES 6 A 127 GLY ARG PHE THR ILE SER ARG ASP ASN ASP LYS ASN THR SEQRES 7 A 127 VAL TYR LEU GLN MET SER ASN LEU LYS PRO GLU ASP THR SEQRES 8 A 127 ALA VAL TYR TYR CYS ALA ALA ARG GLU GLY ASP VAL GLY SEQRES 9 A 127 LEU VAL SER TYR LYS ARG SER SER ASN TYR PRO TYR TRP SEQRES 10 A 127 GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 B 127 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 127 ARG SER PHE SER ARG ASP ALA MET GLY TRP PHE ARG GLN SEQRES 4 B 127 ALA PRO GLY LYS GLU ARG ASP VAL VAL ALA ALA ILE ASN SEQRES 5 B 127 LEU ASN GLY GLY ARG THR TYR SER ALA ASP SER VAL LYS SEQRES 6 B 127 GLY ARG PHE THR ILE SER ARG ASP ASN ASP LYS ASN THR SEQRES 7 B 127 VAL TYR LEU GLN MET SER ASN LEU LYS PRO GLU ASP THR SEQRES 8 B 127 ALA VAL TYR TYR CYS ALA ALA ARG GLU GLY ASP VAL GLY SEQRES 9 B 127 LEU VAL SER TYR LYS ARG SER SER ASN TYR PRO TYR TRP SEQRES 10 B 127 GLY GLN GLY THR GLN VAL THR VAL SER SER HET SO4 A1128 5 HET GOL A1129 14 HET SO4 A1130 5 HET GOL A1131 6 HET SO4 B1128 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 8 HOH *106(H2 O) HELIX 1 1 LYS A 87 THR A 91 5 5 HELIX 2 2 VAL A 106 ARG A 110 5 5 HELIX 3 3 ARG A 110 TYR A 114 5 5 HELIX 4 4 ASN B 74 LYS B 76 5 3 HELIX 5 5 LYS B 87 THR B 91 5 5 HELIX 6 6 VAL B 106 ARG B 110 5 5 HELIX 7 7 ARG B 110 TYR B 114 5 5 SHEET 1 AA 4 LEU A 4 SER A 7 0 SHEET 2 AA 4 LEU A 18 ALA A 24 -1 O SER A 21 N SER A 7 SHEET 3 AA 4 THR A 78 MET A 83 -1 O VAL A 79 N CYS A 22 SHEET 4 AA 4 PHE A 68 ASP A 73 -1 O THR A 69 N GLN A 82 SHEET 1 AB 4 GLY A 10 VAL A 12 0 SHEET 2 AB 4 THR A 121 VAL A 125 1 O GLN A 122 N GLY A 10 SHEET 3 AB 4 ALA A 92 ARG A 99 -1 O ALA A 92 N VAL A 123 SHEET 4 AB 4 TYR A 116 TRP A 117 -1 O TYR A 116 N ALA A 98 SHEET 1 AC 6 GLY A 10 VAL A 12 0 SHEET 2 AC 6 THR A 121 VAL A 125 1 O GLN A 122 N GLY A 10 SHEET 3 AC 6 ALA A 92 ARG A 99 -1 O ALA A 92 N VAL A 123 SHEET 4 AC 6 ALA A 33 GLN A 39 -1 O ALA A 33 N ARG A 99 SHEET 5 AC 6 ASP A 46 ASN A 52 -1 O ASP A 46 N ARG A 38 SHEET 6 AC 6 THR A 58 SER A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 AD 2 TYR A 116 TRP A 117 0 SHEET 2 AD 2 ALA A 92 ARG A 99 -1 O ALA A 98 N TYR A 116 SHEET 1 BA 4 GLN B 3 SER B 7 0 SHEET 2 BA 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 BA 4 THR B 78 MET B 83 -1 O VAL B 79 N CYS B 22 SHEET 4 BA 4 PHE B 68 ASP B 73 -1 O THR B 69 N GLN B 82 SHEET 1 BB 4 GLY B 10 GLN B 13 0 SHEET 2 BB 4 THR B 121 SER B 126 1 O GLN B 122 N GLY B 10 SHEET 3 BB 4 ALA B 92 ARG B 99 -1 O ALA B 92 N VAL B 123 SHEET 4 BB 4 TYR B 116 TRP B 117 -1 O TYR B 116 N ALA B 98 SHEET 1 BC 6 GLY B 10 GLN B 13 0 SHEET 2 BC 6 THR B 121 SER B 126 1 O GLN B 122 N GLY B 10 SHEET 3 BC 6 ALA B 92 ARG B 99 -1 O ALA B 92 N VAL B 123 SHEET 4 BC 6 ALA B 33 GLN B 39 -1 O ALA B 33 N ARG B 99 SHEET 5 BC 6 ASP B 46 ASN B 52 -1 O ASP B 46 N ARG B 38 SHEET 6 BC 6 THR B 58 SER B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 BD 2 TYR B 116 TRP B 117 0 SHEET 2 BD 2 ALA B 92 ARG B 99 -1 O ALA B 98 N TYR B 116 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.02 CISPEP 1 GLY B 55 GLY B 56 0 -2.92 CISPEP 2 GLY B 55 GLY B 56 0 0.12 SITE 1 AC1 9 GLN A 39 GLU A 44 ARG A 45 ARG A 57 SITE 2 AC1 9 THR A 58 LYS A 65 GOL A1129 HOH A2038 SITE 3 AC1 9 HOH A2064 SITE 1 AC2 7 GLU A 44 TYR A 59 SER A 60 LYS A 65 SITE 2 AC2 7 TYR A 108 SO4 A1128 HOH A2039 SITE 1 AC3 4 GLN B 39 ARG B 45 LYS B 65 HOH B2023 SITE 1 AC4 5 ALA A 61 ASP A 62 SER A 63 HOH A2034 SITE 2 AC4 5 HOH A2041 SITE 1 AC5 4 GLY A 26 LYS A 109 SER A 111 SER A 112 CRYST1 24.647 59.209 133.635 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.040573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007483 0.00000 MTRIX1 1 -0.999700 0.006300 0.024700 21.26220 1 MTRIX2 1 0.023500 0.604900 0.796000 -4.76050 1 MTRIX3 1 -0.009900 0.796300 -0.604800 -15.57830 1