data_4B8L # _entry.id 4B8L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4B8L PDBE EBI-53902 WWPDB D_1290053902 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2BFX unspecified 'MECHANISM OF AURORA-B ACTIVATION BY INCENP AND INHIBITION BY HESPERADIN.' PDB 2BFY unspecified 'COMPLEX OF AURORA-B WITH INCENP AND HESPERIDIN.' PDB 2VGO unspecified 'CRYSTAL STRUCTURE OF AURORA B KINASE IN COMPLEX WITH REVERSINE INHIBITOR' PDB 2VGP unspecified 'CRYSTAL STRUCTURE OF AURORA B KINASE IN COMPLEX WITH A AMINOTHIAZOLE INHIBITOR' PDB 2VRX unspecified 'STRUCTURE OF AURORA B KINASE IN COMPLEX WITH ZM447439' PDB 3ZTX unspecified 'AURORA KINASE SELECTIVE INHIBITORS IDENTIFIED USING A TAXOL-INDUCED CHECKPOINT SENSITIVITY SCREEN.' PDB 4B8M unspecified 'AURORA B KINASE IN COMPLEX WITH VX-680' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4B8L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-08-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sessa, F.' 1 'Villa, F.' 2 # _citation.id primary _citation.title 'Structural and Biochemical Analysis of an Aurora B Kinase Mutant Reveals a Multistep Activation Mechanism' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sessa, F.' 1 primary 'Villa, F.' 2 # _cell.entry_id 4B8L _cell.length_a 60.896 _cell.length_b 66.314 _cell.length_c 89.562 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B8L _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'AURORA KINASE B-A' 33603.992 1 2.7.11.1 YES 'RESIDUES 78-361' ? 2 polymer man 'INNER CENTROMERE PROTEIN A' 5073.755 1 ? ? 'RESIDUES 797-840' ? 3 non-polymer syn '9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-alpha-L-arabinofuranosyl}-9H-purin-6-amine' 506.196 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;AURORA/IPL1-RELATED KINASE 2-A, AIRK2-A, XAIRK2-A, SERINE/THREONINE-PROTEIN KINASE 12-A, SERINE/THREONINE-PROTEIN KINASE AURORA-B-A, XAURORA-B ; 2 'XL-INCENP, XINC, XINCENP, MITOTIC PHOSPHOPROTEIN 130' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ATALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRM YNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG WSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGS KDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPGVYQSTQSKD ; ;ATALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRM YNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG WSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGS KDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPGVYQSTQSKD ; A ? 2 'polypeptide(L)' no no PIPAWASGNLLTQAIRQQYYKPIDVDRMYGTIDSPKLEELFNKS PIPAWASGNLLTQAIRQQYYKPIDVDRMYGTIDSPKLEELFNKS D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 ALA n 1 4 LEU n 1 5 ALA n 1 6 GLU n 1 7 MET n 1 8 PRO n 1 9 LYS n 1 10 ARG n 1 11 LYS n 1 12 PHE n 1 13 THR n 1 14 ILE n 1 15 ASP n 1 16 ASP n 1 17 PHE n 1 18 ASP n 1 19 ILE n 1 20 GLY n 1 21 ARG n 1 22 PRO n 1 23 LEU n 1 24 GLY n 1 25 LYS n 1 26 GLY n 1 27 LYS n 1 28 PHE n 1 29 GLY n 1 30 ASN n 1 31 VAL n 1 32 TYR n 1 33 LEU n 1 34 ALA n 1 35 ARG n 1 36 GLU n 1 37 LYS n 1 38 GLN n 1 39 ASN n 1 40 LYS n 1 41 PHE n 1 42 ILE n 1 43 MET n 1 44 ALA n 1 45 LEU n 1 46 LYS n 1 47 VAL n 1 48 LEU n 1 49 PHE n 1 50 LYS n 1 51 SER n 1 52 GLN n 1 53 LEU n 1 54 GLU n 1 55 LYS n 1 56 GLU n 1 57 GLY n 1 58 VAL n 1 59 GLU n 1 60 HIS n 1 61 GLN n 1 62 LEU n 1 63 ARG n 1 64 ARG n 1 65 GLU n 1 66 ILE n 1 67 GLU n 1 68 ILE n 1 69 GLN n 1 70 SER n 1 71 HIS n 1 72 LEU n 1 73 ARG n 1 74 HIS n 1 75 PRO n 1 76 ASN n 1 77 ILE n 1 78 LEU n 1 79 ARG n 1 80 MET n 1 81 TYR n 1 82 ASN n 1 83 TYR n 1 84 PHE n 1 85 HIS n 1 86 ASP n 1 87 ARG n 1 88 LYS n 1 89 ARG n 1 90 ILE n 1 91 TYR n 1 92 LEU n 1 93 MET n 1 94 LEU n 1 95 GLU n 1 96 PHE n 1 97 ALA n 1 98 PRO n 1 99 ARG n 1 100 GLY n 1 101 GLU n 1 102 LEU n 1 103 TYR n 1 104 LYS n 1 105 GLU n 1 106 LEU n 1 107 GLN n 1 108 LYS n 1 109 HIS n 1 110 GLY n 1 111 ARG n 1 112 PHE n 1 113 ASP n 1 114 GLU n 1 115 GLN n 1 116 ARG n 1 117 SER n 1 118 ALA n 1 119 THR n 1 120 PHE n 1 121 MET n 1 122 GLU n 1 123 GLU n 1 124 LEU n 1 125 ALA n 1 126 ASP n 1 127 ALA n 1 128 LEU n 1 129 HIS n 1 130 TYR n 1 131 CYS n 1 132 HIS n 1 133 GLU n 1 134 ARG n 1 135 LYS n 1 136 VAL n 1 137 ILE n 1 138 HIS n 1 139 ARG n 1 140 ASP n 1 141 ILE n 1 142 LYS n 1 143 PRO n 1 144 GLU n 1 145 ASN n 1 146 LEU n 1 147 LEU n 1 148 MET n 1 149 GLY n 1 150 TYR n 1 151 LYS n 1 152 GLY n 1 153 GLU n 1 154 LEU n 1 155 LYS n 1 156 ILE n 1 157 ALA n 1 158 ASP n 1 159 PHE n 1 160 GLY n 1 161 TRP n 1 162 SER n 1 163 VAL n 1 164 HIS n 1 165 ALA n 1 166 PRO n 1 167 SER n 1 168 LEU n 1 169 ARG n 1 170 ARG n 1 171 ARG n 1 172 THR n 1 173 MET n 1 174 CYS n 1 175 GLY n 1 176 THR n 1 177 LEU n 1 178 ASP n 1 179 TYR n 1 180 LEU n 1 181 PRO n 1 182 PRO n 1 183 GLU n 1 184 MET n 1 185 ILE n 1 186 GLU n 1 187 GLY n 1 188 LYS n 1 189 THR n 1 190 HIS n 1 191 ASP n 1 192 GLU n 1 193 LYS n 1 194 VAL n 1 195 ASP n 1 196 LEU n 1 197 TRP n 1 198 CYS n 1 199 ALA n 1 200 GLY n 1 201 VAL n 1 202 LEU n 1 203 CYS n 1 204 TYR n 1 205 GLU n 1 206 PHE n 1 207 LEU n 1 208 VAL n 1 209 GLY n 1 210 MET n 1 211 PRO n 1 212 PRO n 1 213 PHE n 1 214 ASP n 1 215 SER n 1 216 PRO n 1 217 SER n 1 218 HIS n 1 219 THR n 1 220 GLU n 1 221 THR n 1 222 HIS n 1 223 ARG n 1 224 ARG n 1 225 ILE n 1 226 VAL n 1 227 ASN n 1 228 VAL n 1 229 ASP n 1 230 LEU n 1 231 LYS n 1 232 PHE n 1 233 PRO n 1 234 PRO n 1 235 PHE n 1 236 LEU n 1 237 SER n 1 238 ASP n 1 239 GLY n 1 240 SER n 1 241 LYS n 1 242 ASP n 1 243 LEU n 1 244 ILE n 1 245 SER n 1 246 LYS n 1 247 LEU n 1 248 LEU n 1 249 ARG n 1 250 TYR n 1 251 HIS n 1 252 PRO n 1 253 PRO n 1 254 GLN n 1 255 ARG n 1 256 LEU n 1 257 PRO n 1 258 LEU n 1 259 LYS n 1 260 GLY n 1 261 VAL n 1 262 MET n 1 263 GLU n 1 264 HIS n 1 265 PRO n 1 266 TRP n 1 267 VAL n 1 268 LYS n 1 269 ALA n 1 270 ASN n 1 271 SER n 1 272 ARG n 1 273 ARG n 1 274 VAL n 1 275 LEU n 1 276 PRO n 1 277 GLY n 1 278 VAL n 1 279 TYR n 1 280 GLN n 1 281 SER n 1 282 THR n 1 283 GLN n 1 284 SER n 1 285 LYS n 1 286 ASP n 2 1 PRO n 2 2 ILE n 2 3 PRO n 2 4 ALA n 2 5 TRP n 2 6 ALA n 2 7 SER n 2 8 GLY n 2 9 ASN n 2 10 LEU n 2 11 LEU n 2 12 THR n 2 13 GLN n 2 14 ALA n 2 15 ILE n 2 16 ARG n 2 17 GLN n 2 18 GLN n 2 19 TYR n 2 20 TYR n 2 21 LYS n 2 22 PRO n 2 23 ILE n 2 24 ASP n 2 25 VAL n 2 26 ASP n 2 27 ARG n 2 28 MET n 2 29 TYR n 2 30 GLY n 2 31 THR n 2 32 ILE n 2 33 ASP n 2 34 SER n 2 35 PRO n 2 36 LYS n 2 37 LEU n 2 38 GLU n 2 39 GLU n 2 40 LEU n 2 41 PHE n 2 42 ASN n 2 43 LYS n 2 44 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'AFRICAN CLAWED FROG' ? ? ? ? ? ? ? ? 'XENOPUS LAEVIS' 8355 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'AFRICAN CLAWED FROG' ? ? ? ? ? ? ? ? 'XENOPUS LAEVIS' 8355 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP AUKBA_XENLA 1 ? ? Q6DE08 ? 2 UNP INCEA_XENLA 2 ? ? O13024 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4B8L A 2 ? 285 ? Q6DE08 78 ? 361 ? 78 361 2 2 4B8L D 1 ? 44 ? O13024 797 ? 840 ? 797 840 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4B8L ALA A 1 ? UNP Q6DE08 ? ? 'expression tag' 77 1 1 4B8L GLY A 277 ? UNP Q6DE08 PRO 353 'engineered mutation' 353 2 1 4B8L ASP A 286 ? UNP Q6DE08 ? ? 'expression tag' 362 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A0P non-polymer . '9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-alpha-L-arabinofuranosyl}-9H-purin-6-amine' ? 'C10 H17 N6 O12 P3' 506.196 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4B8L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.39 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-06-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93400 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 _diffrn_source.pdbx_wavelength 0.93400 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4B8L _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 3.00 _reflns.number_obs 7248 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.09 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.80 _reflns_shell.pdbx_redundancy 3.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4B8L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7248 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 99.19 _refine.ls_R_factor_obs 0.23963 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23684 _refine.ls_R_factor_R_free 0.29669 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.870 _refine.B_iso_mean 65.929 _refine.aniso_B[1][1] 0.18 _refine.aniso_B[2][2] -0.82 _refine.aniso_B[3][3] 0.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE AUTHORS NOTICED DURING THE REFINEMENT OF THE A0P LIGAND A DIFFERENCE IN THE CANONICAL CHIRALITY DUE TO THE TORSION OF THE LIGAND ITSELF WITHIN THE ACTIVE SITE OF THE ENZYME, AND THEREFORE DECIDED TO DEPOSIT THE COORDINATES AS THEY APPEAR IN THIS ENTRY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.529 _refine.overall_SU_ML 0.436 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 24.420 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2421 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2452 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.022 ? 2535 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.819 1.983 ? 3424 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.491 5.000 ? 292 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.979 23.071 ? 127 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.221 15.000 ? 462 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.891 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.057 0.200 ? 353 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1917 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.300 ? 1179 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.330 0.500 ? 1669 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.175 0.500 ? 111 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.208 0.300 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.229 0.500 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.406 2.000 ? 1483 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.731 3.000 ? 2365 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.231 2.000 ? 1163 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 0.419 3.000 ? 1057 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.000 _refine_ls_shell.d_res_low 3.078 _refine_ls_shell.number_reflns_R_work 503 _refine_ls_shell.R_factor_R_work 0.348 _refine_ls_shell.percent_reflns_obs 97.06 _refine_ls_shell.R_factor_R_free 0.496 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4B8L _struct.title 'Aurora B kinase P353G mutant' _struct.pdbx_descriptor 'AURORA KINASE B-A (E.C.2.7.11.1), INNER CENTROMERE PROTEIN A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4B8L _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE, CANCER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 13 ? ASP A 15 ? THR A 89 ASP A 91 5 ? 3 HELX_P HELX_P2 2 LYS A 50 ? GLU A 56 ? LYS A 126 GLU A 132 1 ? 7 HELX_P HELX_P3 3 VAL A 58 ? GLN A 69 ? VAL A 134 GLN A 145 1 ? 12 HELX_P HELX_P4 4 GLU A 101 ? GLY A 110 ? GLU A 177 GLY A 186 1 ? 10 HELX_P HELX_P5 5 ASP A 113 ? ARG A 134 ? ASP A 189 ARG A 210 1 ? 22 HELX_P HELX_P6 6 LYS A 142 ? GLU A 144 ? LYS A 218 GLU A 220 5 ? 3 HELX_P HELX_P7 7 THR A 176 ? LEU A 180 ? THR A 252 LEU A 256 5 ? 5 HELX_P HELX_P8 8 PRO A 181 ? GLY A 187 ? PRO A 257 GLY A 263 1 ? 7 HELX_P HELX_P9 9 LYS A 193 ? GLY A 209 ? LYS A 269 GLY A 285 1 ? 17 HELX_P HELX_P10 10 SER A 217 ? ASN A 227 ? SER A 293 ASN A 303 1 ? 11 HELX_P HELX_P11 11 SER A 237 ? LEU A 248 ? SER A 313 LEU A 324 1 ? 12 HELX_P HELX_P12 12 HIS A 251 ? ARG A 255 ? HIS A 327 ARG A 331 5 ? 5 HELX_P HELX_P13 13 PRO A 257 ? GLU A 263 ? PRO A 333 GLU A 339 1 ? 7 HELX_P HELX_P14 14 HIS A 264 ? SER A 271 ? HIS A 340 SER A 347 1 ? 8 HELX_P HELX_P15 15 SER B 7 ? LYS B 21 ? SER D 803 LYS D 817 1 ? 15 HELX_P HELX_P16 16 ASP B 24 ? TYR B 29 ? ASP D 820 TYR D 825 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 17 ? LYS A 25 ? PHE A 93 LYS A 101 AA 2 ASN A 30 ? GLU A 36 ? ASN A 106 GLU A 112 AA 3 PHE A 41 ? PHE A 49 ? PHE A 117 PHE A 125 AA 4 ARG A 89 ? LEU A 94 ? ARG A 165 LEU A 170 AA 5 MET A 80 ? PHE A 84 ? MET A 156 PHE A 160 AB 1 LEU A 146 ? MET A 148 ? LEU A 222 MET A 224 AB 2 LEU A 154 ? ILE A 156 ? LEU A 230 ILE A 232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 23 ? N LEU A 99 O VAL A 31 ? O VAL A 107 AA 2 3 N GLU A 36 ? N GLU A 112 O PHE A 41 ? O PHE A 117 AA 3 4 N LEU A 48 ? N LEU A 124 O ILE A 90 ? O ILE A 166 AA 4 5 O MET A 93 ? O MET A 169 N TYR A 81 ? N TYR A 157 AB 1 2 N LEU A 147 ? N LEU A 223 O LYS A 155 ? O LYS A 231 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE A0P A 1352' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 LEU A 23 ? LEU A 99 . ? 1_555 ? 2 AC1 12 GLY A 24 ? GLY A 100 . ? 1_555 ? 3 AC1 12 LYS A 25 ? LYS A 101 . ? 1_555 ? 4 AC1 12 GLY A 26 ? GLY A 102 . ? 1_555 ? 5 AC1 12 LYS A 27 ? LYS A 103 . ? 1_555 ? 6 AC1 12 ALA A 44 ? ALA A 120 . ? 1_555 ? 7 AC1 12 LYS A 46 ? LYS A 122 . ? 1_555 ? 8 AC1 12 GLU A 95 ? GLU A 171 . ? 1_555 ? 9 AC1 12 PHE A 96 ? PHE A 172 . ? 1_555 ? 10 AC1 12 ALA A 97 ? ALA A 173 . ? 1_555 ? 11 AC1 12 GLU A 101 ? GLU A 177 . ? 1_555 ? 12 AC1 12 ASP A 158 ? ASP A 234 . ? 1_555 ? # _database_PDB_matrix.entry_id 4B8L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4B8L _atom_sites.fract_transf_matrix[1][1] 0.016421 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015080 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011165 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 77 ? ? ? A . n A 1 2 THR 2 78 ? ? ? A . n A 1 3 ALA 3 79 ? ? ? A . n A 1 4 LEU 4 80 ? ? ? A . n A 1 5 ALA 5 81 ? ? ? A . n A 1 6 GLU 6 82 ? ? ? A . n A 1 7 MET 7 83 ? ? ? A . n A 1 8 PRO 8 84 ? ? ? A . n A 1 9 LYS 9 85 ? ? ? A . n A 1 10 ARG 10 86 ? ? ? A . n A 1 11 LYS 11 87 87 LYS LYS A . n A 1 12 PHE 12 88 88 PHE PHE A . n A 1 13 THR 13 89 89 THR THR A . n A 1 14 ILE 14 90 90 ILE ILE A . n A 1 15 ASP 15 91 91 ASP ASP A . n A 1 16 ASP 16 92 92 ASP ASP A . n A 1 17 PHE 17 93 93 PHE PHE A . n A 1 18 ASP 18 94 94 ASP ASP A . n A 1 19 ILE 19 95 95 ILE ILE A . n A 1 20 GLY 20 96 96 GLY GLY A . n A 1 21 ARG 21 97 97 ARG ARG A . n A 1 22 PRO 22 98 98 PRO PRO A . n A 1 23 LEU 23 99 99 LEU LEU A . n A 1 24 GLY 24 100 100 GLY GLY A . n A 1 25 LYS 25 101 101 LYS LYS A . n A 1 26 GLY 26 102 102 GLY GLY A . n A 1 27 LYS 27 103 103 LYS LYS A . n A 1 28 PHE 28 104 104 PHE PHE A . n A 1 29 GLY 29 105 105 GLY GLY A . n A 1 30 ASN 30 106 106 ASN ASN A . n A 1 31 VAL 31 107 107 VAL VAL A . n A 1 32 TYR 32 108 108 TYR TYR A . n A 1 33 LEU 33 109 109 LEU LEU A . n A 1 34 ALA 34 110 110 ALA ALA A . n A 1 35 ARG 35 111 111 ARG ARG A . n A 1 36 GLU 36 112 112 GLU GLU A . n A 1 37 LYS 37 113 113 LYS LYS A . n A 1 38 GLN 38 114 114 GLN GLN A . n A 1 39 ASN 39 115 115 ASN ASN A . n A 1 40 LYS 40 116 116 LYS LYS A . n A 1 41 PHE 41 117 117 PHE PHE A . n A 1 42 ILE 42 118 118 ILE ILE A . n A 1 43 MET 43 119 119 MET MET A . n A 1 44 ALA 44 120 120 ALA ALA A . n A 1 45 LEU 45 121 121 LEU LEU A . n A 1 46 LYS 46 122 122 LYS LYS A . n A 1 47 VAL 47 123 123 VAL VAL A . n A 1 48 LEU 48 124 124 LEU LEU A . n A 1 49 PHE 49 125 125 PHE PHE A . n A 1 50 LYS 50 126 126 LYS LYS A . n A 1 51 SER 51 127 127 SER SER A . n A 1 52 GLN 52 128 128 GLN GLN A . n A 1 53 LEU 53 129 129 LEU LEU A . n A 1 54 GLU 54 130 130 GLU GLU A . n A 1 55 LYS 55 131 131 LYS LYS A . n A 1 56 GLU 56 132 132 GLU GLU A . n A 1 57 GLY 57 133 133 GLY GLY A . n A 1 58 VAL 58 134 134 VAL VAL A . n A 1 59 GLU 59 135 135 GLU GLU A . n A 1 60 HIS 60 136 136 HIS HIS A . n A 1 61 GLN 61 137 137 GLN GLN A . n A 1 62 LEU 62 138 138 LEU LEU A . n A 1 63 ARG 63 139 139 ARG ARG A . n A 1 64 ARG 64 140 140 ARG ARG A . n A 1 65 GLU 65 141 141 GLU GLU A . n A 1 66 ILE 66 142 142 ILE ILE A . n A 1 67 GLU 67 143 143 GLU GLU A . n A 1 68 ILE 68 144 144 ILE ILE A . n A 1 69 GLN 69 145 145 GLN GLN A . n A 1 70 SER 70 146 146 SER SER A . n A 1 71 HIS 71 147 147 HIS HIS A . n A 1 72 LEU 72 148 148 LEU LEU A . n A 1 73 ARG 73 149 149 ARG ARG A . n A 1 74 HIS 74 150 150 HIS HIS A . n A 1 75 PRO 75 151 151 PRO PRO A . n A 1 76 ASN 76 152 152 ASN ASN A . n A 1 77 ILE 77 153 153 ILE ILE A . n A 1 78 LEU 78 154 154 LEU LEU A . n A 1 79 ARG 79 155 155 ARG ARG A . n A 1 80 MET 80 156 156 MET MET A . n A 1 81 TYR 81 157 157 TYR TYR A . n A 1 82 ASN 82 158 158 ASN ASN A . n A 1 83 TYR 83 159 159 TYR TYR A . n A 1 84 PHE 84 160 160 PHE PHE A . n A 1 85 HIS 85 161 161 HIS HIS A . n A 1 86 ASP 86 162 162 ASP ASP A . n A 1 87 ARG 87 163 163 ARG ARG A . n A 1 88 LYS 88 164 164 LYS LYS A . n A 1 89 ARG 89 165 165 ARG ARG A . n A 1 90 ILE 90 166 166 ILE ILE A . n A 1 91 TYR 91 167 167 TYR TYR A . n A 1 92 LEU 92 168 168 LEU LEU A . n A 1 93 MET 93 169 169 MET MET A . n A 1 94 LEU 94 170 170 LEU LEU A . n A 1 95 GLU 95 171 171 GLU GLU A . n A 1 96 PHE 96 172 172 PHE PHE A . n A 1 97 ALA 97 173 173 ALA ALA A . n A 1 98 PRO 98 174 174 PRO PRO A . n A 1 99 ARG 99 175 175 ARG ARG A . n A 1 100 GLY 100 176 176 GLY GLY A . n A 1 101 GLU 101 177 177 GLU GLU A . n A 1 102 LEU 102 178 178 LEU LEU A . n A 1 103 TYR 103 179 179 TYR TYR A . n A 1 104 LYS 104 180 180 LYS LYS A . n A 1 105 GLU 105 181 181 GLU GLU A . n A 1 106 LEU 106 182 182 LEU LEU A . n A 1 107 GLN 107 183 183 GLN GLN A . n A 1 108 LYS 108 184 184 LYS LYS A . n A 1 109 HIS 109 185 185 HIS HIS A . n A 1 110 GLY 110 186 186 GLY GLY A . n A 1 111 ARG 111 187 187 ARG ARG A . n A 1 112 PHE 112 188 188 PHE PHE A . n A 1 113 ASP 113 189 189 ASP ASP A . n A 1 114 GLU 114 190 190 GLU GLU A . n A 1 115 GLN 115 191 191 GLN GLN A . n A 1 116 ARG 116 192 192 ARG ARG A . n A 1 117 SER 117 193 193 SER SER A . n A 1 118 ALA 118 194 194 ALA ALA A . n A 1 119 THR 119 195 195 THR THR A . n A 1 120 PHE 120 196 196 PHE PHE A . n A 1 121 MET 121 197 197 MET MET A . n A 1 122 GLU 122 198 198 GLU GLU A . n A 1 123 GLU 123 199 199 GLU GLU A . n A 1 124 LEU 124 200 200 LEU LEU A . n A 1 125 ALA 125 201 201 ALA ALA A . n A 1 126 ASP 126 202 202 ASP ASP A . n A 1 127 ALA 127 203 203 ALA ALA A . n A 1 128 LEU 128 204 204 LEU LEU A . n A 1 129 HIS 129 205 205 HIS HIS A . n A 1 130 TYR 130 206 206 TYR TYR A . n A 1 131 CYS 131 207 207 CYS CYS A . n A 1 132 HIS 132 208 208 HIS HIS A . n A 1 133 GLU 133 209 209 GLU GLU A . n A 1 134 ARG 134 210 210 ARG ARG A . n A 1 135 LYS 135 211 211 LYS LYS A . n A 1 136 VAL 136 212 212 VAL VAL A . n A 1 137 ILE 137 213 213 ILE ILE A . n A 1 138 HIS 138 214 214 HIS HIS A . n A 1 139 ARG 139 215 215 ARG ARG A . n A 1 140 ASP 140 216 216 ASP ASP A . n A 1 141 ILE 141 217 217 ILE ILE A . n A 1 142 LYS 142 218 218 LYS LYS A . n A 1 143 PRO 143 219 219 PRO PRO A . n A 1 144 GLU 144 220 220 GLU GLU A . n A 1 145 ASN 145 221 221 ASN ASN A . n A 1 146 LEU 146 222 222 LEU LEU A . n A 1 147 LEU 147 223 223 LEU LEU A . n A 1 148 MET 148 224 224 MET MET A . n A 1 149 GLY 149 225 225 GLY GLY A . n A 1 150 TYR 150 226 226 TYR TYR A . n A 1 151 LYS 151 227 227 LYS LYS A . n A 1 152 GLY 152 228 228 GLY GLY A . n A 1 153 GLU 153 229 229 GLU GLU A . n A 1 154 LEU 154 230 230 LEU LEU A . n A 1 155 LYS 155 231 231 LYS LYS A . n A 1 156 ILE 156 232 232 ILE ILE A . n A 1 157 ALA 157 233 233 ALA ALA A . n A 1 158 ASP 158 234 234 ASP ASP A . n A 1 159 PHE 159 235 235 PHE PHE A . n A 1 160 GLY 160 236 ? ? ? A . n A 1 161 TRP 161 237 ? ? ? A . n A 1 162 SER 162 238 ? ? ? A . n A 1 163 VAL 163 239 ? ? ? A . n A 1 164 HIS 164 240 ? ? ? A . n A 1 165 ALA 165 241 ? ? ? A . n A 1 166 PRO 166 242 ? ? ? A . n A 1 167 SER 167 243 ? ? ? A . n A 1 168 LEU 168 244 ? ? ? A . n A 1 169 ARG 169 245 ? ? ? A . n A 1 170 ARG 170 246 ? ? ? A . n A 1 171 ARG 171 247 ? ? ? A . n A 1 172 THR 172 248 ? ? ? A . n A 1 173 MET 173 249 ? ? ? A . n A 1 174 CYS 174 250 ? ? ? A . n A 1 175 GLY 175 251 ? ? ? A . n A 1 176 THR 176 252 252 THR THR A . n A 1 177 LEU 177 253 253 LEU LEU A . n A 1 178 ASP 178 254 254 ASP ASP A . n A 1 179 TYR 179 255 255 TYR TYR A . n A 1 180 LEU 180 256 256 LEU LEU A . n A 1 181 PRO 181 257 257 PRO PRO A . n A 1 182 PRO 182 258 258 PRO PRO A . n A 1 183 GLU 183 259 259 GLU GLU A . n A 1 184 MET 184 260 260 MET MET A . n A 1 185 ILE 185 261 261 ILE ILE A . n A 1 186 GLU 186 262 262 GLU GLU A . n A 1 187 GLY 187 263 263 GLY GLY A . n A 1 188 LYS 188 264 264 LYS LYS A . n A 1 189 THR 189 265 265 THR THR A . n A 1 190 HIS 190 266 266 HIS HIS A . n A 1 191 ASP 191 267 267 ASP ASP A . n A 1 192 GLU 192 268 268 GLU GLU A . n A 1 193 LYS 193 269 269 LYS LYS A . n A 1 194 VAL 194 270 270 VAL VAL A . n A 1 195 ASP 195 271 271 ASP ASP A . n A 1 196 LEU 196 272 272 LEU LEU A . n A 1 197 TRP 197 273 273 TRP TRP A . n A 1 198 CYS 198 274 274 CYS CYS A . n A 1 199 ALA 199 275 275 ALA ALA A . n A 1 200 GLY 200 276 276 GLY GLY A . n A 1 201 VAL 201 277 277 VAL VAL A . n A 1 202 LEU 202 278 278 LEU LEU A . n A 1 203 CYS 203 279 279 CYS CYS A . n A 1 204 TYR 204 280 280 TYR TYR A . n A 1 205 GLU 205 281 281 GLU GLU A . n A 1 206 PHE 206 282 282 PHE PHE A . n A 1 207 LEU 207 283 283 LEU LEU A . n A 1 208 VAL 208 284 284 VAL VAL A . n A 1 209 GLY 209 285 285 GLY GLY A . n A 1 210 MET 210 286 286 MET MET A . n A 1 211 PRO 211 287 287 PRO PRO A . n A 1 212 PRO 212 288 288 PRO PRO A . n A 1 213 PHE 213 289 289 PHE PHE A . n A 1 214 ASP 214 290 290 ASP ASP A . n A 1 215 SER 215 291 291 SER SER A . n A 1 216 PRO 216 292 292 PRO PRO A . n A 1 217 SER 217 293 293 SER SER A . n A 1 218 HIS 218 294 294 HIS HIS A . n A 1 219 THR 219 295 295 THR THR A . n A 1 220 GLU 220 296 296 GLU GLU A . n A 1 221 THR 221 297 297 THR THR A . n A 1 222 HIS 222 298 298 HIS HIS A . n A 1 223 ARG 223 299 299 ARG ARG A . n A 1 224 ARG 224 300 300 ARG ARG A . n A 1 225 ILE 225 301 301 ILE ILE A . n A 1 226 VAL 226 302 302 VAL VAL A . n A 1 227 ASN 227 303 303 ASN ASN A . n A 1 228 VAL 228 304 304 VAL VAL A . n A 1 229 ASP 229 305 305 ASP ASP A . n A 1 230 LEU 230 306 306 LEU LEU A . n A 1 231 LYS 231 307 307 LYS LYS A . n A 1 232 PHE 232 308 308 PHE PHE A . n A 1 233 PRO 233 309 309 PRO PRO A . n A 1 234 PRO 234 310 310 PRO PRO A . n A 1 235 PHE 235 311 311 PHE PHE A . n A 1 236 LEU 236 312 312 LEU LEU A . n A 1 237 SER 237 313 313 SER SER A . n A 1 238 ASP 238 314 314 ASP ASP A . n A 1 239 GLY 239 315 315 GLY GLY A . n A 1 240 SER 240 316 316 SER SER A . n A 1 241 LYS 241 317 317 LYS LYS A . n A 1 242 ASP 242 318 318 ASP ASP A . n A 1 243 LEU 243 319 319 LEU LEU A . n A 1 244 ILE 244 320 320 ILE ILE A . n A 1 245 SER 245 321 321 SER SER A . n A 1 246 LYS 246 322 322 LYS LYS A . n A 1 247 LEU 247 323 323 LEU LEU A . n A 1 248 LEU 248 324 324 LEU LEU A . n A 1 249 ARG 249 325 325 ARG ARG A . n A 1 250 TYR 250 326 326 TYR TYR A . n A 1 251 HIS 251 327 327 HIS HIS A . n A 1 252 PRO 252 328 328 PRO PRO A . n A 1 253 PRO 253 329 329 PRO PRO A . n A 1 254 GLN 254 330 330 GLN GLN A . n A 1 255 ARG 255 331 331 ARG ARG A . n A 1 256 LEU 256 332 332 LEU LEU A . n A 1 257 PRO 257 333 333 PRO PRO A . n A 1 258 LEU 258 334 334 LEU LEU A . n A 1 259 LYS 259 335 335 LYS LYS A . n A 1 260 GLY 260 336 336 GLY GLY A . n A 1 261 VAL 261 337 337 VAL VAL A . n A 1 262 MET 262 338 338 MET MET A . n A 1 263 GLU 263 339 339 GLU GLU A . n A 1 264 HIS 264 340 340 HIS HIS A . n A 1 265 PRO 265 341 341 PRO PRO A . n A 1 266 TRP 266 342 342 TRP TRP A . n A 1 267 VAL 267 343 343 VAL VAL A . n A 1 268 LYS 268 344 344 LYS LYS A . n A 1 269 ALA 269 345 345 ALA ALA A . n A 1 270 ASN 270 346 346 ASN ASN A . n A 1 271 SER 271 347 347 SER SER A . n A 1 272 ARG 272 348 348 ARG ARG A . n A 1 273 ARG 273 349 349 ARG ARG A . n A 1 274 VAL 274 350 350 VAL VAL A . n A 1 275 LEU 275 351 351 LEU LEU A . n A 1 276 PRO 276 352 ? ? ? A . n A 1 277 GLY 277 353 ? ? ? A . n A 1 278 VAL 278 354 ? ? ? A . n A 1 279 TYR 279 355 ? ? ? A . n A 1 280 GLN 280 356 ? ? ? A . n A 1 281 SER 281 357 ? ? ? A . n A 1 282 THR 282 358 ? ? ? A . n A 1 283 GLN 283 359 ? ? ? A . n A 1 284 SER 284 360 ? ? ? A . n A 1 285 LYS 285 361 ? ? ? A . n A 1 286 ASP 286 362 ? ? ? A . n B 2 1 PRO 1 797 797 PRO PRO D . n B 2 2 ILE 2 798 798 ILE ILE D . n B 2 3 PRO 3 799 799 PRO PRO D . n B 2 4 ALA 4 800 800 ALA ALA D . n B 2 5 TRP 5 801 801 TRP TRP D . n B 2 6 ALA 6 802 802 ALA ALA D . n B 2 7 SER 7 803 803 SER SER D . n B 2 8 GLY 8 804 804 GLY GLY D . n B 2 9 ASN 9 805 805 ASN ASN D . n B 2 10 LEU 10 806 806 LEU LEU D . n B 2 11 LEU 11 807 807 LEU LEU D . n B 2 12 THR 12 808 808 THR THR D . n B 2 13 GLN 13 809 809 GLN GLN D . n B 2 14 ALA 14 810 810 ALA ALA D . n B 2 15 ILE 15 811 811 ILE ILE D . n B 2 16 ARG 16 812 812 ARG ARG D . n B 2 17 GLN 17 813 813 GLN GLN D . n B 2 18 GLN 18 814 814 GLN GLN D . n B 2 19 TYR 19 815 815 TYR TYR D . n B 2 20 TYR 20 816 816 TYR TYR D . n B 2 21 LYS 21 817 817 LYS LYS D . n B 2 22 PRO 22 818 818 PRO PRO D . n B 2 23 ILE 23 819 819 ILE ILE D . n B 2 24 ASP 24 820 820 ASP ASP D . n B 2 25 VAL 25 821 821 VAL VAL D . n B 2 26 ASP 26 822 822 ASP ASP D . n B 2 27 ARG 27 823 823 ARG ARG D . n B 2 28 MET 28 824 824 MET MET D . n B 2 29 TYR 29 825 825 TYR TYR D . n B 2 30 GLY 30 826 826 GLY GLY D . n B 2 31 THR 31 827 827 THR THR D . n B 2 32 ILE 32 828 828 ILE ILE D . n B 2 33 ASP 33 829 829 ASP ASP D . n B 2 34 SER 34 830 830 SER SER D . n B 2 35 PRO 35 831 831 PRO PRO D . n B 2 36 LYS 36 832 832 LYS LYS D . n B 2 37 LEU 37 833 833 LEU LEU D . n B 2 38 GLU 38 834 834 GLU GLU D . n B 2 39 GLU 39 835 835 GLU GLU D . n B 2 40 LEU 40 836 836 LEU LEU D . n B 2 41 PHE 41 837 837 PHE PHE D . n B 2 42 ASN 42 838 838 ASN ASN D . n B 2 43 LYS 43 839 ? ? ? D . n B 2 44 SER 44 840 ? ? ? D . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id A0P _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1352 _pdbx_nonpoly_scheme.auth_seq_num 1352 _pdbx_nonpoly_scheme.pdb_mon_id A0P _pdbx_nonpoly_scheme.auth_mon_id A0P _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3810 ? 1 MORE -23.4 ? 1 'SSA (A^2)' 14840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 4B8L _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE LIGAND HAS BEEN DEPOSITED UNDER THE HETEROGEN NAME A0P SEE REMARK 3 FOR DETAILS ON REFINEMENT OF THIS COMPOUND. ; _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 131 ? ? -68.61 4.24 2 1 ASN A 158 ? ? -174.88 -156.75 3 1 HIS A 161 ? ? -168.87 118.20 4 1 ASP A 162 ? ? -86.02 -157.74 5 1 LYS A 184 ? ? -52.11 -70.62 6 1 ARG A 215 ? ? 80.25 -35.32 7 1 ALA A 233 ? ? -81.60 -93.69 8 1 ASP A 267 ? ? -115.56 -165.91 9 1 ASP A 305 ? ? -69.32 79.35 10 1 TYR D 825 ? ? -104.20 66.72 11 1 THR D 827 ? ? -37.65 96.38 12 1 ILE D 828 ? ? -60.63 -75.72 13 1 LYS D 832 ? ? 50.10 178.99 14 1 LEU D 833 ? ? -77.76 -118.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 77 ? A ALA 1 2 1 Y 1 A THR 78 ? A THR 2 3 1 Y 1 A ALA 79 ? A ALA 3 4 1 Y 1 A LEU 80 ? A LEU 4 5 1 Y 1 A ALA 81 ? A ALA 5 6 1 Y 1 A GLU 82 ? A GLU 6 7 1 Y 1 A MET 83 ? A MET 7 8 1 Y 1 A PRO 84 ? A PRO 8 9 1 Y 1 A LYS 85 ? A LYS 9 10 1 Y 1 A ARG 86 ? A ARG 10 11 1 Y 1 A GLY 236 ? A GLY 160 12 1 Y 1 A TRP 237 ? A TRP 161 13 1 Y 1 A SER 238 ? A SER 162 14 1 Y 1 A VAL 239 ? A VAL 163 15 1 Y 1 A HIS 240 ? A HIS 164 16 1 Y 1 A ALA 241 ? A ALA 165 17 1 Y 1 A PRO 242 ? A PRO 166 18 1 Y 1 A SER 243 ? A SER 167 19 1 Y 1 A LEU 244 ? A LEU 168 20 1 Y 1 A ARG 245 ? A ARG 169 21 1 Y 1 A ARG 246 ? A ARG 170 22 1 Y 1 A ARG 247 ? A ARG 171 23 1 Y 1 A THR 248 ? A THR 172 24 1 Y 1 A MET 249 ? A MET 173 25 1 Y 1 A CYS 250 ? A CYS 174 26 1 Y 1 A GLY 251 ? A GLY 175 27 1 Y 1 A PRO 352 ? A PRO 276 28 1 Y 1 A GLY 353 ? A GLY 277 29 1 Y 1 A VAL 354 ? A VAL 278 30 1 Y 1 A TYR 355 ? A TYR 279 31 1 Y 1 A GLN 356 ? A GLN 280 32 1 Y 1 A SER 357 ? A SER 281 33 1 Y 1 A THR 358 ? A THR 282 34 1 Y 1 A GLN 359 ? A GLN 283 35 1 Y 1 A SER 360 ? A SER 284 36 1 Y 1 A LYS 361 ? A LYS 285 37 1 Y 1 A ASP 362 ? A ASP 286 38 1 Y 1 D LYS 839 ? B LYS 43 39 1 Y 1 D SER 840 ? B SER 44 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-alpha-L-arabinofuranosyl}-9H-purin-6-amine' _pdbx_entity_nonpoly.comp_id A0P #