data_4B8V # _entry.id 4B8V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4B8V PDBE EBI-53340 WWPDB D_1290053340 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4B9H _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BETA-1,4-LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER: I3C HEAVY ATOM DERIVATIVE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4B8V _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-08-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saleem-Batcha, R.' 1 'Sanchez-Vallet, A.' 2 'Hansen, G.' 3 'Thomma, B.P.H.J.' 4 'Mesters, J.R.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization' Elife 2 00790 ? 2013 ? US 2050-084X ? ? 23840930 10.7554/ELIFE.00790 1 'Conserved Fungal Lysm Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants.' Science 329 953 ? 2010 SCIEAS US 0036-8075 0038 ? 20724636 10.1126/SCIENCE.1190859 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanchez-Vallet, A.' 1 ? primary 'Saleem-Batcha, R.' 2 ? primary 'Kombrink, A.' 3 ? primary 'Hansen, G.' 4 ? primary 'Valkenburg, D.J.' 5 ? primary 'Thomma, B.P.H.J.' 6 ? primary 'Mesters, J.R.' 7 ? 1 'De Jonge, R.' 8 ? 1 'Van Esse, H.P.' 9 ? 1 'Kombrink, A.' 10 ? 1 'Shinya, T.' 11 ? 1 'Desaki, Y.' 12 ? 1 'Bours, R.' 13 ? 1 'Van Der Krol, S.' 14 ? 1 'Shibuya, N.' 15 ? 1 'Joosten, M.H.A.J.' 16 ? 1 'Thomma, B.P.H.J.' 17 ? # _cell.entry_id 4B8V _cell.length_a 57.500 _cell.length_b 57.500 _cell.length_c 118.730 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B8V _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EXTRACELLULAR PROTEIN 6' 23892.125 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose ; 830.786 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FUNGAL EFFECTOR ECP6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQSMILFAAALMGAAVNGFVLPRTDDPDCETKATDCGSTSNIKYTVVKGDTLTSIAKKFKSGICNIVSVNKLANPNLIEL GATLIIPENCSNPDNKSCVSTPAEPTETCVPGLPGSYTIVSGDTLTNISQDFNITLDSLIAANTQIENPDAIDVGQIITV PVCPSSQCEAVGTYNIVAGDLFVDLAATYHTTIGQIKALNNNVNPSKLKVGQQIILPQDCKNVTTAVA ; _entity_poly.pdbx_seq_one_letter_code_can ;MQSMILFAAALMGAAVNGFVLPRTDDPDCETKATDCGSTSNIKYTVVKGDTLTSIAKKFKSGICNIVSVNKLANPNLIEL GATLIIPENCSNPDNKSCVSTPAEPTETCVPGLPGSYTIVSGDTLTNISQDFNITLDSLIAANTQIENPDAIDVGQIITV PVCPSSQCEAVGTYNIVAGDLFVDLAATYHTTIGQIKALNNNVNPSKLKVGQQIILPQDCKNVTTAVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 SER n 1 4 MET n 1 5 ILE n 1 6 LEU n 1 7 PHE n 1 8 ALA n 1 9 ALA n 1 10 ALA n 1 11 LEU n 1 12 MET n 1 13 GLY n 1 14 ALA n 1 15 ALA n 1 16 VAL n 1 17 ASN n 1 18 GLY n 1 19 PHE n 1 20 VAL n 1 21 LEU n 1 22 PRO n 1 23 ARG n 1 24 THR n 1 25 ASP n 1 26 ASP n 1 27 PRO n 1 28 ASP n 1 29 CYS n 1 30 GLU n 1 31 THR n 1 32 LYS n 1 33 ALA n 1 34 THR n 1 35 ASP n 1 36 CYS n 1 37 GLY n 1 38 SER n 1 39 THR n 1 40 SER n 1 41 ASN n 1 42 ILE n 1 43 LYS n 1 44 TYR n 1 45 THR n 1 46 VAL n 1 47 VAL n 1 48 LYS n 1 49 GLY n 1 50 ASP n 1 51 THR n 1 52 LEU n 1 53 THR n 1 54 SER n 1 55 ILE n 1 56 ALA n 1 57 LYS n 1 58 LYS n 1 59 PHE n 1 60 LYS n 1 61 SER n 1 62 GLY n 1 63 ILE n 1 64 CYS n 1 65 ASN n 1 66 ILE n 1 67 VAL n 1 68 SER n 1 69 VAL n 1 70 ASN n 1 71 LYS n 1 72 LEU n 1 73 ALA n 1 74 ASN n 1 75 PRO n 1 76 ASN n 1 77 LEU n 1 78 ILE n 1 79 GLU n 1 80 LEU n 1 81 GLY n 1 82 ALA n 1 83 THR n 1 84 LEU n 1 85 ILE n 1 86 ILE n 1 87 PRO n 1 88 GLU n 1 89 ASN n 1 90 CYS n 1 91 SER n 1 92 ASN n 1 93 PRO n 1 94 ASP n 1 95 ASN n 1 96 LYS n 1 97 SER n 1 98 CYS n 1 99 VAL n 1 100 SER n 1 101 THR n 1 102 PRO n 1 103 ALA n 1 104 GLU n 1 105 PRO n 1 106 THR n 1 107 GLU n 1 108 THR n 1 109 CYS n 1 110 VAL n 1 111 PRO n 1 112 GLY n 1 113 LEU n 1 114 PRO n 1 115 GLY n 1 116 SER n 1 117 TYR n 1 118 THR n 1 119 ILE n 1 120 VAL n 1 121 SER n 1 122 GLY n 1 123 ASP n 1 124 THR n 1 125 LEU n 1 126 THR n 1 127 ASN n 1 128 ILE n 1 129 SER n 1 130 GLN n 1 131 ASP n 1 132 PHE n 1 133 ASN n 1 134 ILE n 1 135 THR n 1 136 LEU n 1 137 ASP n 1 138 SER n 1 139 LEU n 1 140 ILE n 1 141 ALA n 1 142 ALA n 1 143 ASN n 1 144 THR n 1 145 GLN n 1 146 ILE n 1 147 GLU n 1 148 ASN n 1 149 PRO n 1 150 ASP n 1 151 ALA n 1 152 ILE n 1 153 ASP n 1 154 VAL n 1 155 GLY n 1 156 GLN n 1 157 ILE n 1 158 ILE n 1 159 THR n 1 160 VAL n 1 161 PRO n 1 162 VAL n 1 163 CYS n 1 164 PRO n 1 165 SER n 1 166 SER n 1 167 GLN n 1 168 CYS n 1 169 GLU n 1 170 ALA n 1 171 VAL n 1 172 GLY n 1 173 THR n 1 174 TYR n 1 175 ASN n 1 176 ILE n 1 177 VAL n 1 178 ALA n 1 179 GLY n 1 180 ASP n 1 181 LEU n 1 182 PHE n 1 183 VAL n 1 184 ASP n 1 185 LEU n 1 186 ALA n 1 187 ALA n 1 188 THR n 1 189 TYR n 1 190 HIS n 1 191 THR n 1 192 THR n 1 193 ILE n 1 194 GLY n 1 195 GLN n 1 196 ILE n 1 197 LYS n 1 198 ALA n 1 199 LEU n 1 200 ASN n 1 201 ASN n 1 202 ASN n 1 203 VAL n 1 204 ASN n 1 205 PRO n 1 206 SER n 1 207 LYS n 1 208 LEU n 1 209 LYS n 1 210 VAL n 1 211 GLY n 1 212 GLN n 1 213 GLN n 1 214 ILE n 1 215 ILE n 1 216 LEU n 1 217 PRO n 1 218 GLN n 1 219 ASP n 1 220 CYS n 1 221 LYS n 1 222 ASN n 1 223 VAL n 1 224 THR n 1 225 THR n 1 226 ALA n 1 227 VAL n 1 228 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'TOMATO LEAF MOLD' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PASSALORA FULVA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5499 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'KOMAGATAELLA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPIC9 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B3VBK9_PASFU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession B3VBK9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4B8V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B3VBK9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -28 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 NDG 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4B8V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 0.44 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;ECP6 IN 20 MM HEPES, PH 7.0, AND 50 MM NACL. CRYSTALS WERE OBTAINED BY MICRO-SEEDING, USING A RESERVOIR WITH 200 MM AMMONIUM SULPHATE, 100 MM SODIUM ACETATE, PH 4.6, AND 20-30% PEG MME 200 (W/V). ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91814 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.91814 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4B8V _reflns.observed_criterion_sigma_I -2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.80 _reflns.d_resolution_high 1.60 _reflns.number_obs 31231 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.59 _reflns_shell.d_res_low 1.68 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 8.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4B8V _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30624 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.80 _refine.ls_d_res_high 1.59 _refine.ls_percent_reflns_obs 98.06 _refine.ls_R_factor_obs 0.20369 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20254 _refine.ls_R_factor_R_free 0.22504 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1546 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 28.975 _refine.aniso_B[1][1] -0.21 _refine.aniso_B[2][2] -0.21 _refine.aniso_B[3][3] 0.32 _refine.aniso_B[1][2] -0.11 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.086 _refine.overall_SU_ML 0.063 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.523 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1387 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1605 _refine_hist.d_res_high 1.59 _refine_hist.d_res_low 49.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.020 ? 1521 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 947 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.805 2.049 ? 2094 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.448 3.007 ? 2352 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.295 5.000 ? 190 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.006 28.400 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.797 15.000 ? 234 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 280 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1614 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.004 0.020 ? 218 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.592 _refine_ls_shell.d_res_low 1.633 _refine_ls_shell.number_reflns_R_work 1850 _refine_ls_shell.R_factor_R_work 0.240 _refine_ls_shell.percent_reflns_obs 91.91 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 105 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4B8V _struct.title 'Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer' _struct.pdbx_descriptor 'EXTRACELLULAR PROTEIN 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4B8V _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'SUGAR BINDING PROTEIN, CHITIN, LYSM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 51 ? PHE A 59 ? THR A 22 PHE A 30 1 ? 9 HELX_P HELX_P2 2 GLY A 62 ? ASN A 70 ? GLY A 33 ASN A 41 1 ? 9 HELX_P HELX_P3 3 THR A 124 ? PHE A 132 ? THR A 95 PHE A 103 1 ? 9 HELX_P HELX_P4 4 THR A 135 ? ALA A 142 ? THR A 106 ALA A 113 1 ? 8 HELX_P HELX_P5 5 LEU A 181 ? HIS A 190 ? LEU A 152 HIS A 161 1 ? 10 HELX_P HELX_P6 6 THR A 192 ? ASN A 200 ? THR A 163 ASN A 171 1 ? 9 HELX_P HELX_P7 7 ASN A 204 ? LEU A 208 ? ASN A 175 LEU A 179 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 7 A CYS 61 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf2 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 35 A CYS 69 1_555 ? ? ? ? ? ? ? 2.089 ? ? disulf3 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 163 SG ? ? A CYS 80 A CYS 134 1_555 ? ? ? ? ? ? ? 2.285 ? ? disulf4 disulf ? ? A CYS 168 SG ? ? ? 1_555 A CYS 220 SG ? ? A CYS 139 A CYS 191 1_555 ? ? ? ? ? ? ? 2.191 ? ? covale1 covale one ? A ASN 133 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 104 B NAG 1 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation covale2 covale one ? A ASN 222 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 193 A NAG 1198 1_555 ? ? ? ? ? ? ? 1.421 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale4 covale both ? C NDG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NDG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale5 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 2 C NAG 3 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 3 C NAG 4 1_555 ? ? ? ? ? ? ? 1.396 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 113 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 84 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 114 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 85 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.66 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? AD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 40 ? THR A 45 ? SER A 11 THR A 16 AA 2 THR A 83 ? GLU A 88 ? THR A 54 GLU A 59 AB 1 SER A 116 ? THR A 118 ? SER A 87 THR A 89 AB 2 ILE A 157 ? THR A 159 ? ILE A 128 THR A 130 AC 1 SER A 166 ? CYS A 168 ? SER A 137 CYS A 139 AC 2 CYS A 220 ? ASN A 222 ? CYS A 191 ASN A 193 AD 1 GLY A 172 ? ASN A 175 ? GLY A 143 ASN A 146 AD 2 GLN A 213 ? LEU A 216 ? GLN A 184 LEU A 187 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 44 ? N TYR A 15 O LEU A 84 ? O LEU A 55 AB 1 2 N TYR A 117 ? N TYR A 88 O ILE A 158 ? O ILE A 129 AC 1 2 N GLN A 167 ? N GLN A 138 O LYS A 221 ? O LYS A 192 AD 1 2 N TYR A 174 ? N TYR A 145 O ILE A 214 ? O ILE A 185 # _database_PDB_matrix.entry_id 4B8V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4B8V _atom_sites.fract_transf_matrix[1][1] 0.017391 _atom_sites.fract_transf_matrix[1][2] 0.010041 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020082 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008422 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -28 ? ? ? A . n A 1 2 GLN 2 -27 ? ? ? A . n A 1 3 SER 3 -26 ? ? ? A . n A 1 4 MET 4 -25 ? ? ? A . n A 1 5 ILE 5 -24 ? ? ? A . n A 1 6 LEU 6 -23 ? ? ? A . n A 1 7 PHE 7 -22 ? ? ? A . n A 1 8 ALA 8 -21 ? ? ? A . n A 1 9 ALA 9 -20 ? ? ? A . n A 1 10 ALA 10 -19 ? ? ? A . n A 1 11 LEU 11 -18 ? ? ? A . n A 1 12 MET 12 -17 ? ? ? A . n A 1 13 GLY 13 -16 ? ? ? A . n A 1 14 ALA 14 -15 ? ? ? A . n A 1 15 ALA 15 -14 ? ? ? A . n A 1 16 VAL 16 -13 ? ? ? A . n A 1 17 ASN 17 -12 ? ? ? A . n A 1 18 GLY 18 -11 ? ? ? A . n A 1 19 PHE 19 -10 ? ? ? A . n A 1 20 VAL 20 -9 ? ? ? A . n A 1 21 LEU 21 -8 ? ? ? A . n A 1 22 PRO 22 -7 ? ? ? A . n A 1 23 ARG 23 -6 ? ? ? A . n A 1 24 THR 24 -5 ? ? ? A . n A 1 25 ASP 25 -4 ? ? ? A . n A 1 26 ASP 26 -3 ? ? ? A . n A 1 27 PRO 27 -2 ? ? ? A . n A 1 28 ASP 28 -1 ? ? ? A . n A 1 29 CYS 29 0 ? ? ? A . n A 1 30 GLU 30 1 ? ? ? A . n A 1 31 THR 31 2 ? ? ? A . n A 1 32 LYS 32 3 ? ? ? A . n A 1 33 ALA 33 4 ? ? ? A . n A 1 34 THR 34 5 ? ? ? A . n A 1 35 ASP 35 6 ? ? ? A . n A 1 36 CYS 36 7 7 CYS CYS A . n A 1 37 GLY 37 8 8 GLY GLY A . n A 1 38 SER 38 9 9 SER SER A . n A 1 39 THR 39 10 10 THR THR A . n A 1 40 SER 40 11 11 SER SER A . n A 1 41 ASN 41 12 12 ASN ASN A . n A 1 42 ILE 42 13 13 ILE ILE A . n A 1 43 LYS 43 14 14 LYS LYS A . n A 1 44 TYR 44 15 15 TYR TYR A . n A 1 45 THR 45 16 16 THR THR A . n A 1 46 VAL 46 17 17 VAL VAL A . n A 1 47 VAL 47 18 18 VAL VAL A . n A 1 48 LYS 48 19 19 LYS LYS A . n A 1 49 GLY 49 20 20 GLY GLY A . n A 1 50 ASP 50 21 21 ASP ASP A . n A 1 51 THR 51 22 22 THR THR A . n A 1 52 LEU 52 23 23 LEU LEU A . n A 1 53 THR 53 24 24 THR THR A . n A 1 54 SER 54 25 25 SER SER A . n A 1 55 ILE 55 26 26 ILE ILE A . n A 1 56 ALA 56 27 27 ALA ALA A . n A 1 57 LYS 57 28 28 LYS LYS A . n A 1 58 LYS 58 29 29 LYS LYS A . n A 1 59 PHE 59 30 30 PHE PHE A . n A 1 60 LYS 60 31 31 LYS LYS A . n A 1 61 SER 61 32 32 SER SER A . n A 1 62 GLY 62 33 33 GLY GLY A . n A 1 63 ILE 63 34 34 ILE ILE A . n A 1 64 CYS 64 35 35 CYS CYS A . n A 1 65 ASN 65 36 36 ASN ASN A . n A 1 66 ILE 66 37 37 ILE ILE A . n A 1 67 VAL 67 38 38 VAL VAL A . n A 1 68 SER 68 39 39 SER SER A . n A 1 69 VAL 69 40 40 VAL VAL A . n A 1 70 ASN 70 41 41 ASN ASN A . n A 1 71 LYS 71 42 42 LYS LYS A . n A 1 72 LEU 72 43 43 LEU LEU A . n A 1 73 ALA 73 44 44 ALA ALA A . n A 1 74 ASN 74 45 45 ASN ASN A . n A 1 75 PRO 75 46 46 PRO PRO A . n A 1 76 ASN 76 47 47 ASN ASN A . n A 1 77 LEU 77 48 48 LEU LEU A . n A 1 78 ILE 78 49 49 ILE ILE A . n A 1 79 GLU 79 50 50 GLU GLU A . n A 1 80 LEU 80 51 51 LEU LEU A . n A 1 81 GLY 81 52 52 GLY GLY A . n A 1 82 ALA 82 53 53 ALA ALA A . n A 1 83 THR 83 54 54 THR THR A . n A 1 84 LEU 84 55 55 LEU LEU A . n A 1 85 ILE 85 56 56 ILE ILE A . n A 1 86 ILE 86 57 57 ILE ILE A . n A 1 87 PRO 87 58 58 PRO PRO A . n A 1 88 GLU 88 59 59 GLU GLU A . n A 1 89 ASN 89 60 60 ASN ASN A . n A 1 90 CYS 90 61 61 CYS CYS A . n A 1 91 SER 91 62 62 SER SER A . n A 1 92 ASN 92 63 63 ASN ASN A . n A 1 93 PRO 93 64 64 PRO PRO A . n A 1 94 ASP 94 65 65 ASP ASP A . n A 1 95 ASN 95 66 66 ASN ASN A . n A 1 96 LYS 96 67 67 LYS LYS A . n A 1 97 SER 97 68 68 SER SER A . n A 1 98 CYS 98 69 69 CYS CYS A . n A 1 99 VAL 99 70 70 VAL VAL A . n A 1 100 SER 100 71 71 SER SER A . n A 1 101 THR 101 72 72 THR THR A . n A 1 102 PRO 102 73 73 PRO PRO A . n A 1 103 ALA 103 74 74 ALA ALA A . n A 1 104 GLU 104 75 75 GLU GLU A . n A 1 105 PRO 105 76 76 PRO PRO A . n A 1 106 THR 106 77 77 THR THR A . n A 1 107 GLU 107 78 78 GLU GLU A . n A 1 108 THR 108 79 79 THR THR A . n A 1 109 CYS 109 80 80 CYS CYS A . n A 1 110 VAL 110 81 81 VAL VAL A . n A 1 111 PRO 111 82 82 PRO PRO A . n A 1 112 GLY 112 83 83 GLY GLY A . n A 1 113 LEU 113 84 84 LEU LEU A . n A 1 114 PRO 114 85 85 PRO PRO A . n A 1 115 GLY 115 86 86 GLY GLY A . n A 1 116 SER 116 87 87 SER SER A . n A 1 117 TYR 117 88 88 TYR TYR A . n A 1 118 THR 118 89 89 THR THR A . n A 1 119 ILE 119 90 90 ILE ILE A . n A 1 120 VAL 120 91 91 VAL VAL A . n A 1 121 SER 121 92 92 SER SER A . n A 1 122 GLY 122 93 93 GLY GLY A . n A 1 123 ASP 123 94 94 ASP ASP A . n A 1 124 THR 124 95 95 THR THR A . n A 1 125 LEU 125 96 96 LEU LEU A . n A 1 126 THR 126 97 97 THR THR A . n A 1 127 ASN 127 98 98 ASN ASN A . n A 1 128 ILE 128 99 99 ILE ILE A . n A 1 129 SER 129 100 100 SER SER A . n A 1 130 GLN 130 101 101 GLN GLN A . n A 1 131 ASP 131 102 102 ASP ASP A . n A 1 132 PHE 132 103 103 PHE PHE A . n A 1 133 ASN 133 104 104 ASN ASN A . n A 1 134 ILE 134 105 105 ILE ILE A . n A 1 135 THR 135 106 106 THR THR A . n A 1 136 LEU 136 107 107 LEU LEU A . n A 1 137 ASP 137 108 108 ASP ASP A . n A 1 138 SER 138 109 109 SER SER A . n A 1 139 LEU 139 110 110 LEU LEU A . n A 1 140 ILE 140 111 111 ILE ILE A . n A 1 141 ALA 141 112 112 ALA ALA A . n A 1 142 ALA 142 113 113 ALA ALA A . n A 1 143 ASN 143 114 114 ASN ASN A . n A 1 144 THR 144 115 115 THR THR A . n A 1 145 GLN 145 116 116 GLN GLN A . n A 1 146 ILE 146 117 117 ILE ILE A . n A 1 147 GLU 147 118 118 GLU GLU A . n A 1 148 ASN 148 119 119 ASN ASN A . n A 1 149 PRO 149 120 120 PRO PRO A . n A 1 150 ASP 150 121 121 ASP ASP A . n A 1 151 ALA 151 122 122 ALA ALA A . n A 1 152 ILE 152 123 123 ILE ILE A . n A 1 153 ASP 153 124 124 ASP ASP A . n A 1 154 VAL 154 125 125 VAL VAL A . n A 1 155 GLY 155 126 126 GLY GLY A . n A 1 156 GLN 156 127 127 GLN GLN A . n A 1 157 ILE 157 128 128 ILE ILE A . n A 1 158 ILE 158 129 129 ILE ILE A . n A 1 159 THR 159 130 130 THR THR A . n A 1 160 VAL 160 131 131 VAL VAL A . n A 1 161 PRO 161 132 132 PRO PRO A . n A 1 162 VAL 162 133 133 VAL VAL A . n A 1 163 CYS 163 134 134 CYS CYS A . n A 1 164 PRO 164 135 135 PRO PRO A . n A 1 165 SER 165 136 136 SER SER A . n A 1 166 SER 166 137 137 SER SER A . n A 1 167 GLN 167 138 138 GLN GLN A . n A 1 168 CYS 168 139 139 CYS CYS A . n A 1 169 GLU 169 140 140 GLU GLU A . n A 1 170 ALA 170 141 141 ALA ALA A . n A 1 171 VAL 171 142 142 VAL VAL A . n A 1 172 GLY 172 143 143 GLY GLY A . n A 1 173 THR 173 144 144 THR THR A . n A 1 174 TYR 174 145 145 TYR TYR A . n A 1 175 ASN 175 146 146 ASN ASN A . n A 1 176 ILE 176 147 147 ILE ILE A . n A 1 177 VAL 177 148 148 VAL VAL A . n A 1 178 ALA 178 149 149 ALA ALA A . n A 1 179 GLY 179 150 150 GLY GLY A . n A 1 180 ASP 180 151 151 ASP ASP A . n A 1 181 LEU 181 152 152 LEU LEU A . n A 1 182 PHE 182 153 153 PHE PHE A . n A 1 183 VAL 183 154 154 VAL VAL A . n A 1 184 ASP 184 155 155 ASP ASP A . n A 1 185 LEU 185 156 156 LEU LEU A . n A 1 186 ALA 186 157 157 ALA ALA A . n A 1 187 ALA 187 158 158 ALA ALA A . n A 1 188 THR 188 159 159 THR THR A . n A 1 189 TYR 189 160 160 TYR TYR A . n A 1 190 HIS 190 161 161 HIS HIS A . n A 1 191 THR 191 162 162 THR THR A . n A 1 192 THR 192 163 163 THR THR A . n A 1 193 ILE 193 164 164 ILE ILE A . n A 1 194 GLY 194 165 165 GLY GLY A . n A 1 195 GLN 195 166 166 GLN GLN A . n A 1 196 ILE 196 167 167 ILE ILE A . n A 1 197 LYS 197 168 168 LYS LYS A . n A 1 198 ALA 198 169 169 ALA ALA A . n A 1 199 LEU 199 170 170 LEU LEU A . n A 1 200 ASN 200 171 171 ASN ASN A . n A 1 201 ASN 201 172 172 ASN ASN A . n A 1 202 ASN 202 173 173 ASN ASN A . n A 1 203 VAL 203 174 174 VAL VAL A . n A 1 204 ASN 204 175 175 ASN ASN A . n A 1 205 PRO 205 176 176 PRO PRO A . n A 1 206 SER 206 177 177 SER SER A . n A 1 207 LYS 207 178 178 LYS LYS A . n A 1 208 LEU 208 179 179 LEU LEU A . n A 1 209 LYS 209 180 180 LYS LYS A . n A 1 210 VAL 210 181 181 VAL VAL A . n A 1 211 GLY 211 182 182 GLY GLY A . n A 1 212 GLN 212 183 183 GLN GLN A . n A 1 213 GLN 213 184 184 GLN GLN A . n A 1 214 ILE 214 185 185 ILE ILE A . n A 1 215 ILE 215 186 186 ILE ILE A . n A 1 216 LEU 216 187 187 LEU LEU A . n A 1 217 PRO 217 188 188 PRO PRO A . n A 1 218 GLN 218 189 189 GLN GLN A . n A 1 219 ASP 219 190 190 ASP ASP A . n A 1 220 CYS 220 191 191 CYS CYS A . n A 1 221 LYS 221 192 192 LYS LYS A . n A 1 222 ASN 222 193 193 ASN ASN A . n A 1 223 VAL 223 194 194 VAL VAL A . n A 1 224 THR 224 195 195 THR THR A . n A 1 225 THR 225 196 ? ? ? A . n A 1 226 ALA 226 197 ? ? ? A . n A 1 227 VAL 227 198 ? ? ? A . n A 1 228 ALA 228 199 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 1198 1198 NAG NAG A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . E 5 HOH 82 2082 2082 HOH HOH A . E 5 HOH 83 2083 2083 HOH HOH A . E 5 HOH 84 2084 2084 HOH HOH A . E 5 HOH 85 2085 2085 HOH HOH A . E 5 HOH 86 2086 2086 HOH HOH A . E 5 HOH 87 2087 2087 HOH HOH A . E 5 HOH 88 2088 2088 HOH HOH A . E 5 HOH 89 2089 2089 HOH HOH A . E 5 HOH 90 2090 2090 HOH HOH A . E 5 HOH 91 2091 2091 HOH HOH A . E 5 HOH 92 2092 2092 HOH HOH A . E 5 HOH 93 2093 2093 HOH HOH A . E 5 HOH 94 2094 2094 HOH HOH A . E 5 HOH 95 2095 2095 HOH HOH A . E 5 HOH 96 2096 2096 HOH HOH A . E 5 HOH 97 2097 2097 HOH HOH A . E 5 HOH 98 2098 2098 HOH HOH A . E 5 HOH 99 2099 2099 HOH HOH A . E 5 HOH 100 2100 2100 HOH HOH A . E 5 HOH 101 2101 2101 HOH HOH A . E 5 HOH 102 2102 2102 HOH HOH A . E 5 HOH 103 2103 2103 HOH HOH A . E 5 HOH 104 2104 2104 HOH HOH A . E 5 HOH 105 2105 2105 HOH HOH A . E 5 HOH 106 2106 2106 HOH HOH A . E 5 HOH 107 2107 2107 HOH HOH A . E 5 HOH 108 2108 2108 HOH HOH A . E 5 HOH 109 2109 2109 HOH HOH A . E 5 HOH 110 2110 2110 HOH HOH A . E 5 HOH 111 2111 2111 HOH HOH A . E 5 HOH 112 2112 2112 HOH HOH A . E 5 HOH 113 2113 2113 HOH HOH A . E 5 HOH 114 2114 2114 HOH HOH A . E 5 HOH 115 2115 2115 HOH HOH A . E 5 HOH 116 2116 2116 HOH HOH A . E 5 HOH 117 2117 2117 HOH HOH A . E 5 HOH 118 2118 2118 HOH HOH A . E 5 HOH 119 2119 2119 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 133 A ASN 104 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 222 A ASN 193 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7560 ? 1 MORE 53.4 ? 1 'SSA (A^2)' 19210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 39.5766666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-17 2 'Structure model' 1 1 2013-09-25 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' atom_site_anisotrop 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_database_status 8 3 'Structure model' pdbx_entity_branch 9 3 'Structure model' pdbx_entity_branch_descriptor 10 3 'Structure model' pdbx_entity_branch_link 11 3 'Structure model' pdbx_entity_branch_list 12 3 'Structure model' pdbx_entity_nonpoly 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 3 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 3 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 3 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 3 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 3 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 3 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 3 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 3 'Structure model' '_atom_site_anisotrop.type_symbol' 28 3 'Structure model' '_chem_comp.name' 29 3 'Structure model' '_chem_comp.type' 30 3 'Structure model' '_pdbx_database_status.status_code_sf' 31 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 32 3 'Structure model' '_struct_conn.pdbx_dist_value' 33 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 34 3 'Structure model' '_struct_conn.pdbx_role' 35 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 36 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 37 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 38 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 39 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 40 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 41 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 12.4781 21.6547 22.9121 0.0834 0.0434 0.0668 0.0237 -0.0316 -0.0166 5.1041 10.2068 2.1724 -1.3216 1.1822 -4.6337 -0.0794 -0.2093 0.1190 0.4097 0.0658 0.0021 -0.1899 -0.0540 0.0136 'X-RAY DIFFRACTION' 2 ? refined 13.6107 16.9239 15.1726 0.0789 0.0985 0.1916 0.0398 0.0124 0.0697 0.5917 4.0364 0.9510 0.0137 -0.0540 0.3776 0.0325 0.1366 0.3184 -0.1556 -0.0352 -0.2514 -0.2039 -0.0677 0.0027 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1199 ? ? A 1202 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 7 ? ? A 1198 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 4B8V _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;GLMU EXISTS AS A BIFUNCTIONAL ENZYME IN MANY BACTERIA INCLUDING MTU, CATALYSING TWO CONSECUTIVE REACTIONS-FIRST, ACETYLTRANSFERASE REACTION CONVERTING ALPHA-D-GLUCOSAMINE-1-PHOSPHATE (GLCN1P)(NAG) TO N-ACETYL-ALPHA-D-GLUCOSAMINE-1-PHOSPHATE (GLCNAC1P)(NDG). ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 140 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 140 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 1.93 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 32 ? ? -108.22 -169.10 2 1 ALA A 141 ? A -164.13 82.98 3 1 THR A 162 ? ? -135.98 -157.38 4 1 ASN A 171 ? ? -140.17 55.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -28 ? A MET 1 2 1 Y 1 A GLN -27 ? A GLN 2 3 1 Y 1 A SER -26 ? A SER 3 4 1 Y 1 A MET -25 ? A MET 4 5 1 Y 1 A ILE -24 ? A ILE 5 6 1 Y 1 A LEU -23 ? A LEU 6 7 1 Y 1 A PHE -22 ? A PHE 7 8 1 Y 1 A ALA -21 ? A ALA 8 9 1 Y 1 A ALA -20 ? A ALA 9 10 1 Y 1 A ALA -19 ? A ALA 10 11 1 Y 1 A LEU -18 ? A LEU 11 12 1 Y 1 A MET -17 ? A MET 12 13 1 Y 1 A GLY -16 ? A GLY 13 14 1 Y 1 A ALA -15 ? A ALA 14 15 1 Y 1 A ALA -14 ? A ALA 15 16 1 Y 1 A VAL -13 ? A VAL 16 17 1 Y 1 A ASN -12 ? A ASN 17 18 1 Y 1 A GLY -11 ? A GLY 18 19 1 Y 1 A PHE -10 ? A PHE 19 20 1 Y 1 A VAL -9 ? A VAL 20 21 1 Y 1 A LEU -8 ? A LEU 21 22 1 Y 1 A PRO -7 ? A PRO 22 23 1 Y 1 A ARG -6 ? A ARG 23 24 1 Y 1 A THR -5 ? A THR 24 25 1 Y 1 A ASP -4 ? A ASP 25 26 1 Y 1 A ASP -3 ? A ASP 26 27 1 Y 1 A PRO -2 ? A PRO 27 28 1 Y 1 A ASP -1 ? A ASP 28 29 1 Y 1 A CYS 0 ? A CYS 29 30 1 Y 1 A GLU 1 ? A GLU 30 31 1 Y 1 A THR 2 ? A THR 31 32 1 Y 1 A LYS 3 ? A LYS 32 33 1 Y 1 A ALA 4 ? A ALA 33 34 1 Y 1 A THR 5 ? A THR 34 35 1 Y 1 A ASP 6 ? A ASP 35 36 1 Y 1 A THR 196 ? A THR 225 37 1 Y 1 A ALA 197 ? A ALA 226 38 1 Y 1 A VAL 198 ? A VAL 227 39 1 Y 1 A ALA 199 ? A ALA 228 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1196 n B 2 NAG 2 B NAG 2 A NAG 1197 n C 3 NDG 1 C NDG 1 A NDG 1199 n C 3 NAG 2 C NAG 2 A NAG 1200 n C 3 NAG 3 C NAG 3 A NAG 1201 n C 3 NAG 4 C NAG 4 A NAG 1202 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc NDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAca NDG 'COMMON NAME' GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc NDG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAca1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,4,3/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O]/1-2-2-2/a4-b1_b4-c1_c4-d1' WURCS PDB2Glycan 1.1.0 6 3 '[][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 2 NAG C1 O1 1 NDG O4 HO4 sing ? 3 3 3 NAG C1 O1 2 NAG O4 HO4 sing ? 4 3 4 NAG C1 O1 3 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 3 NDG 1 n 3 NAG 2 n 3 NAG 3 n 3 NAG 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH #