HEADER OXIDOREDUCTASE 31-AUG-12 4B8W TITLE CRYSTAL STRUCTURE OF HUMAN GDP-L-FUCOSE SYNTHASE WITH BOUND NADP AND TITLE 2 GDP, TETRAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-L-FUCOSE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDP-4-KETO-6-DEOXY-D-MANNOSE-3\,5-EPIMERASE- 4-REDUCTASE, COMPND 5 PROTEIN FX, RED CELL NADP(H)-BINDING PROTEIN, SHORT-CHAIN COMPND 6 DEHYDROGENASE/REDUCTASE FAMILY 4E MEMBER 1; COMPND 7 EC: 1.1.1.271; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VOLLMAR,T.KROJER,N.SHAFQAT,A.ROJKOVA,G.BUNKOCZI,A.PIKE,A.CHAIKUAT, AUTHOR 2 E.CARPENTER,W.W.YUE,K.KAVANAGH,F.VON DELFT,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 3 C.BOUNTRA,A.EDWARDS,U.OPPERMANN REVDAT 4 20-DEC-23 4B8W 1 REMARK REVDAT 3 24-JAN-18 4B8W 1 JRNL REVDAT 2 05-DEC-12 4B8W 1 AUTHOR REVDAT 1 21-NOV-12 4B8W 0 JRNL AUTH M.VOLLMAR,T.KROJER,N.SHAFQAT,A.ROJKOVA,G.BUNKOCZI,A.PIKE, JRNL AUTH 2 A.CHAIKUAT,E.CARPENTER,W.W.YUE,K.KAVANAGH,F.VON DELFT, JRNL AUTH 3 J.WEIGELT,C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN GDP-L-FUCOSE SYNTHASE WITH BOUND JRNL TITL 2 NADP AND GDP, TETRAGONAL CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 14273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.28 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2880 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2224 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2754 REMARK 3 BIN R VALUE (WORKING SET) : 0.2209 REMARK 3 BIN FREE R VALUE : 0.2539 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.38 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.59010 REMARK 3 B22 (A**2) : 2.59010 REMARK 3 B33 (A**2) : -5.18020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.435 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.397 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4872 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6696 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2096 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 809 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4872 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 661 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5591 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.75 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 25.6232 48.0341 9.8955 REMARK 3 T TENSOR REMARK 3 T11: -0.2483 T22: -0.1525 REMARK 3 T33: -0.0307 T12: -0.0039 REMARK 3 T13: 0.0401 T23: -0.1768 REMARK 3 L TENSOR REMARK 3 L11: 1.5026 L22: 2.6990 REMARK 3 L33: 2.1538 L12: -0.2003 REMARK 3 L13: -0.4323 L23: -0.9062 REMARK 3 S TENSOR REMARK 3 S11: -0.2337 S12: 0.0299 S13: 0.1549 REMARK 3 S21: -0.0663 S22: -0.1465 S23: -0.0886 REMARK 3 S31: 0.0388 S32: -0.2700 S33: 0.3801 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 27.8231 9.6971 12.9622 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: -0.2309 REMARK 3 T33: -0.2809 T12: -0.1838 REMARK 3 T13: 0.1570 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 2.7597 L22: 4.2614 REMARK 3 L33: 1.1155 L12: 1.5637 REMARK 3 L13: 1.3860 L23: -0.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.3693 S12: -0.2194 S13: -0.2860 REMARK 3 S21: 0.0377 S22: -0.2189 S23: -0.0542 REMARK 3 S31: 0.5074 S32: -0.2179 S33: -0.1504 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4B8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GFS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M BIS-TRIS PH 5.5, 25% REMARK 280 PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.46000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 ASP B 29 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 GLY B 32 REMARK 465 LEU B 33 REMARK 465 GLY B 74 REMARK 465 GLY B 75 REMARK 465 LEU B 76 REMARK 465 PHE B 77 REMARK 465 ARG B 78 REMARK 465 ASN B 79 REMARK 465 ILE B 80 REMARK 465 LYS B 81 REMARK 465 TYR B 82 REMARK 465 GLN B 318 REMARK 465 ALA B 319 REMARK 465 ARG B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -6 CG OD1 ND2 REMARK 470 LEU A -5 CG CD1 CD2 REMARK 470 TYR A -4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A -2 CG CD OE1 NE2 REMARK 470 SER A -1 OG REMARK 470 MET A 8 CG SD CE REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 VAL A 41 CG1 CG2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 ARG A 55 CD NE CZ NH1 NH2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLN A 62 CG CD OE1 NE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 THR A 123 OG1 CG2 REMARK 470 ILE A 131 CG1 CG2 CD1 REMARK 470 ASN A 138 CG OD1 ND2 REMARK 470 SER A 139 OG REMARK 470 GLN A 159 CG CD OE1 NE2 REMARK 470 ILE A 182 CG1 CG2 CD1 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 SER A 200 OG REMARK 470 SER A 201 OG REMARK 470 SER A 203 OG REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 VAL A 250 CG1 CG2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 TYR B -4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B -3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B -2 CG CD OE1 NE2 REMARK 470 SER B -1 OG REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 VAL B 27 CG1 CG2 REMARK 470 ASP B 37 CG OD1 OD2 REMARK 470 SER B 42 OG REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 MET B 72 CG SD CE REMARK 470 VAL B 73 CG1 CG2 REMARK 470 LEU B 84 CD1 CD2 REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 PHE B 86 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 VAL B 104 CG1 CG2 REMARK 470 ARG B 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 THR B 123 OG1 CG2 REMARK 470 ILE B 131 CG1 CG2 CD1 REMARK 470 SER B 139 OG REMARK 470 ASN B 179 CG OD1 ND2 REMARK 470 ASN B 181 CG OD1 ND2 REMARK 470 ILE B 182 CG1 CG2 CD1 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 VAL B 187 CG1 CG2 REMARK 470 LEU B 191 CG CD1 CD2 REMARK 470 ILE B 192 CG1 CG2 CD1 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 VAL B 195 CG1 CG2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 SER B 200 OG REMARK 470 SER B 201 OG REMARK 470 SER B 203 OG REMARK 470 THR B 210 OG1 CG2 REMARK 470 ASN B 212 CG OD1 ND2 REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 ASP B 248 CG OD1 OD2 REMARK 470 VAL B 250 CG1 CG2 REMARK 470 SER B 251 OG REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 ASP B 264 CG OD1 OD2 REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 THR B 270 OG1 CG2 REMARK 470 THR B 274 OG1 CG2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 SER B 276 OG REMARK 470 ASP B 277 CG OD1 OD2 REMARK 470 GLN B 279 CD OE1 NE2 REMARK 470 SER B 287 OG REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 CYS B 309 SG REMARK 470 THR B 313 OG1 CG2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 11.96 -69.41 REMARK 500 LYS A 60 -71.84 -71.79 REMARK 500 ASN A 133 48.92 -84.08 REMARK 500 THR A 171 -142.55 -87.18 REMARK 500 ILE A 182 5.63 -69.04 REMARK 500 GLU A 183 -38.02 -135.73 REMARK 500 GLU A 233 -37.18 -137.71 REMARK 500 THR A 283 109.35 -29.51 REMARK 500 LYS B 60 -71.72 -71.99 REMARK 500 THR B 171 -145.46 -87.65 REMARK 500 ILE B 182 6.65 -69.70 REMARK 500 GLU B 183 -38.21 -136.43 REMARK 500 GLU B 233 -36.40 -138.10 REMARK 500 THR B 283 106.64 -29.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 901 REMARK 999 REMARK 999 SEQUENCE REMARK 999 INITIAL RESIDUES NLYFQ DUE TO UNCLEAVED EXPRESSION TAG DBREF 4B8W A -1 320 UNP Q13630 FCL_HUMAN 7 320 DBREF 4B8W B -1 320 UNP Q13630 FCL_HUMAN 7 320 SEQADV 4B8W ASN A -6 UNP Q13630 EXPRESSION TAG SEQADV 4B8W LEU A -5 UNP Q13630 EXPRESSION TAG SEQADV 4B8W TYR A -4 UNP Q13630 EXPRESSION TAG SEQADV 4B8W PHE A -3 UNP Q13630 EXPRESSION TAG SEQADV 4B8W GLN A -2 UNP Q13630 EXPRESSION TAG SEQADV 4B8W ASN B -6 UNP Q13630 EXPRESSION TAG SEQADV 4B8W LEU B -5 UNP Q13630 EXPRESSION TAG SEQADV 4B8W TYR B -4 UNP Q13630 EXPRESSION TAG SEQADV 4B8W PHE B -3 UNP Q13630 EXPRESSION TAG SEQADV 4B8W GLN B -2 UNP Q13630 EXPRESSION TAG SEQRES 1 A 319 ASN LEU TYR PHE GLN SER MET ARG ILE LEU VAL THR GLY SEQRES 2 A 319 GLY SER GLY LEU VAL GLY LYS ALA ILE GLN LYS VAL VAL SEQRES 3 A 319 ALA ASP GLY ALA GLY LEU PRO GLY GLU ASP TRP VAL PHE SEQRES 4 A 319 VAL SER SER LYS ASP ALA ASP LEU THR ASP THR ALA GLN SEQRES 5 A 319 THR ARG ALA LEU PHE GLU LYS VAL GLN PRO THR HIS VAL SEQRES 6 A 319 ILE HIS LEU ALA ALA MET VAL GLY GLY LEU PHE ARG ASN SEQRES 7 A 319 ILE LYS TYR ASN LEU ASP PHE TRP ARG LYS ASN VAL HIS SEQRES 8 A 319 MET ASN ASP ASN VAL LEU HIS SER ALA PHE GLU VAL GLY SEQRES 9 A 319 ALA ARG LYS VAL VAL SER CYS LEU SER THR CYS ILE PHE SEQRES 10 A 319 PRO ASP LYS THR THR TYR PRO ILE ASP GLU THR MET ILE SEQRES 11 A 319 HIS ASN GLY PRO PRO HIS ASN SER ASN PHE GLY TYR SER SEQRES 12 A 319 TYR ALA LYS ARG MET ILE ASP VAL GLN ASN ARG ALA TYR SEQRES 13 A 319 PHE GLN GLN TYR GLY CYS THR PHE THR ALA VAL ILE PRO SEQRES 14 A 319 THR ASN VAL PHE GLY PRO HIS ASP ASN PHE ASN ILE GLU SEQRES 15 A 319 ASP GLY HIS VAL LEU PRO GLY LEU ILE HIS LYS VAL HIS SEQRES 16 A 319 LEU ALA LYS SER SER GLY SER ALA LEU THR VAL TRP GLY SEQRES 17 A 319 THR GLY ASN PRO ARG ARG GLN PHE ILE TYR SER LEU ASP SEQRES 18 A 319 LEU ALA GLN LEU PHE ILE TRP VAL LEU ARG GLU TYR ASN SEQRES 19 A 319 GLU VAL GLU PRO ILE ILE LEU SER VAL GLY GLU GLU ASP SEQRES 20 A 319 GLU VAL SER ILE LYS GLU ALA ALA GLU ALA VAL VAL GLU SEQRES 21 A 319 ALA MET ASP PHE HIS GLY GLU VAL THR PHE ASP THR THR SEQRES 22 A 319 LYS SER ASP GLY GLN PHE LYS LYS THR ALA SER ASN SER SEQRES 23 A 319 LYS LEU ARG THR TYR LEU PRO ASP PHE ARG PHE THR PRO SEQRES 24 A 319 PHE LYS GLN ALA VAL LYS GLU THR CYS ALA TRP PHE THR SEQRES 25 A 319 ASP ASN TYR GLU GLN ALA ARG SEQRES 1 B 319 ASN LEU TYR PHE GLN SER MET ARG ILE LEU VAL THR GLY SEQRES 2 B 319 GLY SER GLY LEU VAL GLY LYS ALA ILE GLN LYS VAL VAL SEQRES 3 B 319 ALA ASP GLY ALA GLY LEU PRO GLY GLU ASP TRP VAL PHE SEQRES 4 B 319 VAL SER SER LYS ASP ALA ASP LEU THR ASP THR ALA GLN SEQRES 5 B 319 THR ARG ALA LEU PHE GLU LYS VAL GLN PRO THR HIS VAL SEQRES 6 B 319 ILE HIS LEU ALA ALA MET VAL GLY GLY LEU PHE ARG ASN SEQRES 7 B 319 ILE LYS TYR ASN LEU ASP PHE TRP ARG LYS ASN VAL HIS SEQRES 8 B 319 MET ASN ASP ASN VAL LEU HIS SER ALA PHE GLU VAL GLY SEQRES 9 B 319 ALA ARG LYS VAL VAL SER CYS LEU SER THR CYS ILE PHE SEQRES 10 B 319 PRO ASP LYS THR THR TYR PRO ILE ASP GLU THR MET ILE SEQRES 11 B 319 HIS ASN GLY PRO PRO HIS ASN SER ASN PHE GLY TYR SER SEQRES 12 B 319 TYR ALA LYS ARG MET ILE ASP VAL GLN ASN ARG ALA TYR SEQRES 13 B 319 PHE GLN GLN TYR GLY CYS THR PHE THR ALA VAL ILE PRO SEQRES 14 B 319 THR ASN VAL PHE GLY PRO HIS ASP ASN PHE ASN ILE GLU SEQRES 15 B 319 ASP GLY HIS VAL LEU PRO GLY LEU ILE HIS LYS VAL HIS SEQRES 16 B 319 LEU ALA LYS SER SER GLY SER ALA LEU THR VAL TRP GLY SEQRES 17 B 319 THR GLY ASN PRO ARG ARG GLN PHE ILE TYR SER LEU ASP SEQRES 18 B 319 LEU ALA GLN LEU PHE ILE TRP VAL LEU ARG GLU TYR ASN SEQRES 19 B 319 GLU VAL GLU PRO ILE ILE LEU SER VAL GLY GLU GLU ASP SEQRES 20 B 319 GLU VAL SER ILE LYS GLU ALA ALA GLU ALA VAL VAL GLU SEQRES 21 B 319 ALA MET ASP PHE HIS GLY GLU VAL THR PHE ASP THR THR SEQRES 22 B 319 LYS SER ASP GLY GLN PHE LYS LYS THR ALA SER ASN SER SEQRES 23 B 319 LYS LEU ARG THR TYR LEU PRO ASP PHE ARG PHE THR PRO SEQRES 24 B 319 PHE LYS GLN ALA VAL LYS GLU THR CYS ALA TRP PHE THR SEQRES 25 B 319 ASP ASN TYR GLU GLN ALA ARG HET NAP A 900 48 HET GDP A 901 28 HET NAP B 900 48 HET GDP B 901 28 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *13(H2 O) HELIX 1 1 GLY A 17 ASP A 29 1 13 HELIX 2 2 ASP A 50 VAL A 61 1 12 HELIX 3 3 GLY A 75 ILE A 80 1 6 HELIX 4 4 TYR A 82 VAL A 104 1 23 HELIX 5 5 SER A 114 PHE A 118 5 5 HELIX 6 6 ASP A 127 HIS A 132 5 6 HELIX 7 7 ASN A 140 GLY A 162 1 23 HELIX 8 8 HIS A 186 GLY A 202 1 17 HELIX 9 9 SER A 220 TYR A 234 1 15 HELIX 10 10 GLY A 245 GLU A 249 5 5 HELIX 11 11 ILE A 252 MET A 263 1 12 HELIX 12 12 ASN A 286 LEU A 293 1 8 HELIX 13 13 PRO A 300 ASN A 315 1 16 HELIX 14 14 GLY B 17 ALA B 28 1 12 HELIX 15 15 ASP B 50 VAL B 61 1 12 HELIX 16 16 ASN B 83 VAL B 104 1 22 HELIX 17 17 SER B 114 PHE B 118 5 5 HELIX 18 18 ASP B 127 HIS B 132 5 6 HELIX 19 19 ASN B 140 GLY B 162 1 23 HELIX 20 20 HIS B 186 GLY B 202 1 17 HELIX 21 21 SER B 220 TYR B 234 1 15 HELIX 22 22 GLY B 245 GLU B 249 5 5 HELIX 23 23 ILE B 252 MET B 263 1 12 HELIX 24 24 ASN B 286 LEU B 293 1 8 HELIX 25 25 PRO B 300 ASN B 315 1 16 SHEET 1 AA 6 ASP A 37 PHE A 40 0 SHEET 2 AA 6 ARG A 9 THR A 13 1 O ILE A 10 N VAL A 39 SHEET 3 AA 6 HIS A 65 HIS A 68 1 O HIS A 65 N LEU A 11 SHEET 4 AA 6 LYS A 108 CYS A 112 1 O LYS A 108 N VAL A 66 SHEET 5 AA 6 THR A 164 PRO A 170 1 O THR A 164 N VAL A 109 SHEET 6 AA 6 ILE A 240 LEU A 242 1 O ILE A 240 N ILE A 169 SHEET 1 AB 2 ASN A 172 PHE A 174 0 SHEET 2 AB 2 PHE A 217 TYR A 219 1 O ILE A 218 N PHE A 174 SHEET 1 AC 2 LEU A 205 TRP A 208 0 SHEET 2 AC 2 VAL A 269 ASP A 272 1 O THR A 270 N VAL A 207 SHEET 1 AD 2 ARG A 214 ARG A 215 0 SHEET 2 AD 2 VAL A 250 SER A 251 -1 O VAL A 250 N ARG A 215 SHEET 1 BA 6 GLU B 36 VAL B 41 0 SHEET 2 BA 6 MET B 8 THR B 13 1 O MET B 8 N ASP B 37 SHEET 3 BA 6 HIS B 65 HIS B 68 1 O HIS B 65 N LEU B 11 SHEET 4 BA 6 LYS B 108 CYS B 112 1 O LYS B 108 N VAL B 66 SHEET 5 BA 6 THR B 164 PRO B 170 1 O THR B 164 N VAL B 109 SHEET 6 BA 6 ILE B 240 LEU B 242 1 O ILE B 240 N ILE B 169 SHEET 1 BB 2 ASN B 172 PHE B 174 0 SHEET 2 BB 2 PHE B 217 TYR B 219 1 O ILE B 218 N PHE B 174 SHEET 1 BC 2 LEU B 205 TRP B 208 0 SHEET 2 BC 2 VAL B 269 ASP B 272 1 O THR B 270 N VAL B 207 SHEET 1 BD 2 ARG B 214 ARG B 215 0 SHEET 2 BD 2 VAL B 250 SER B 251 -1 O VAL B 250 N ARG B 215 CISPEP 1 TYR A 124 PRO A 125 0 1.91 CISPEP 2 TYR B 124 PRO B 125 0 5.02 SITE 1 AC1 22 GLY A 14 SER A 16 GLY A 17 LEU A 18 SITE 2 AC1 22 VAL A 19 SER A 42 SER A 43 ALA A 46 SITE 3 AC1 22 ASP A 47 LEU A 48 LEU A 69 ALA A 70 SITE 4 AC1 22 ALA A 71 MET A 93 CYS A 112 LEU A 113 SITE 5 AC1 22 TYR A 143 LYS A 147 THR A 171 VAL A 173 SITE 6 AC1 22 HIS A 186 ARG A 320 SITE 1 AC2 16 GLY A 75 LEU A 76 PHE A 77 ASN A 172 SITE 2 AC2 16 GLY A 185 HIS A 186 VAL A 187 VAL A 207 SITE 3 AC2 16 TRP A 208 PRO A 213 ARG A 215 ILE A 252 SITE 4 AC2 16 SER A 276 ASP A 277 LYS A 282 HOH A2009 SITE 1 AC3 21 GLY B 14 SER B 16 GLY B 17 LEU B 18 SITE 2 AC3 21 VAL B 19 SER B 42 SER B 43 ALA B 46 SITE 3 AC3 21 ASP B 47 LEU B 48 LEU B 69 ALA B 70 SITE 4 AC3 21 ALA B 71 CYS B 112 LEU B 113 TYR B 143 SITE 5 AC3 21 LYS B 147 THR B 171 VAL B 173 HIS B 186 SITE 6 AC3 21 HIS B 266 SITE 1 AC4 10 ASN B 172 GLY B 185 HIS B 186 VAL B 187 SITE 2 AC4 10 VAL B 207 TRP B 208 ARG B 215 SER B 276 SITE 3 AC4 10 ASP B 277 LYS B 282 CRYST1 111.470 111.470 46.920 90.00 90.00 90.00 P 42 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021313 0.00000