HEADER SUGAR BINDING PROTEIN 04-SEP-12 4B9H TITLE CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BETA-1,4- TITLE 2 LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER: I3C HEAVY ATOM DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUNGAL EFFECTOR ECP6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH COMPND 7 A BETA-1,4-LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER (CHITIN) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PASSALORA FULVA; SOURCE 3 ORGANISM_COMMON: TOMATO LEAF MOLD; SOURCE 4 ORGANISM_TAXID: 5499; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SALEEM-BATCHA,A.SANCHEZ-VALLET,G.HANSEN,B.P.H.J.THOMMA,J.R.MESTERS REVDAT 3 29-JUL-20 4B9H 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 25-SEP-13 4B9H 1 JRNL REMARK REVDAT 1 17-JUL-13 4B9H 0 JRNL AUTH A.SANCHEZ-VALLET,R.SALEEM-BATCHA,A.KOMBRINK,G.HANSEN, JRNL AUTH 2 D.J.VALKENBURG,B.P.H.J.THOMMA,J.R.MESTERS JRNL TITL FUNGAL EFFECTOR ECP6 OUTCOMPETES HOST IMMUNE RECEPTOR FOR JRNL TITL 2 CHITIN BINDING THROUGH INTRACHAIN LYSM DIMERIZATION JRNL REF ELIFE V. 2 00790 2013 JRNL REFN ESSN 2050-084X JRNL PMID 23840930 JRNL DOI 10.7554/ELIFE.00790 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.DE JONGE,H.P.VAN ESSE,A.KOMBRINK,T.SHINYA,Y.DESAKI, REMARK 1 AUTH 2 R.BOURS,S.VAN DER KROL,N.SHIBUYA,M.H.A.J.JOOSTEN, REMARK 1 AUTH 3 B.P.H.J.THOMMA REMARK 1 TITL CONSERVED FUNGAL LYSM EFFECTOR ECP6 PREVENTS REMARK 1 TITL 2 CHITIN-TRIGGERED IMMUNITY IN PLANTS. REMARK 1 REF SCIENCE V. 329 953 2010 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 20724636 REMARK 1 DOI 10.1126/SCIENCE.1190859 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 13072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : -0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1531 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 947 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2108 ; 1.941 ; 2.061 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2349 ; 1.021 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 188 ; 7.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;40.406 ;28.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 234 ;15.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1622 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 220 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1199 A 1202 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5928 21.7306 62.7378 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.1306 REMARK 3 T33: 0.1243 T12: 0.0226 REMARK 3 T13: -0.0168 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 15.5962 L22: 6.2959 REMARK 3 L33: 1.8236 L12: -1.7458 REMARK 3 L13: 4.3998 L23: -2.3762 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.4196 S13: 0.2076 REMARK 3 S21: 0.3382 S22: -0.1036 S23: -0.1416 REMARK 3 S31: -0.1129 S32: -0.0694 S33: 0.1149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 1963 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8369 20.2714 55.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1766 REMARK 3 T33: 0.1628 T12: -0.0197 REMARK 3 T13: -0.0520 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.3889 L22: 1.7469 REMARK 3 L33: 1.1232 L12: -1.3959 REMARK 3 L13: -0.6257 L23: 0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.3721 S13: 0.2869 REMARK 3 S21: -0.1221 S22: -0.0424 S23: 0.2827 REMARK 3 S31: -0.0736 S32: -0.2319 S33: 0.0675 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1203 A 1203 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0431 32.6989 50.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.5278 T22: 0.3318 REMARK 3 T33: 0.3347 T12: 0.2273 REMARK 3 T13: 0.0707 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 124.5397 L22: 94.5724 REMARK 3 L33: 17.7423 L12:-108.2275 REMARK 3 L13: 46.9362 L23: -40.6239 REMARK 3 S TENSOR REMARK 3 S11: -1.1443 S12: -1.3909 S13: 0.5925 REMARK 3 S21: 0.4832 S22: 0.9346 S23: -0.5743 REMARK 3 S31: -0.5898 S32: -0.5970 S33: 0.2097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.70 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 31.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 18.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.78600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.89300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.89300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.78600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 55.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 119.67900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -28 REMARK 465 GLN A -27 REMARK 465 SER A -26 REMARK 465 MET A -25 REMARK 465 ILE A -24 REMARK 465 LEU A -23 REMARK 465 PHE A -22 REMARK 465 ALA A -21 REMARK 465 ALA A -20 REMARK 465 ALA A -19 REMARK 465 LEU A -18 REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 ASN A -12 REMARK 465 GLY A -11 REMARK 465 PHE A -10 REMARK 465 VAL A -9 REMARK 465 LEU A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 THR A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASP A -1 REMARK 465 CYS A 0 REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 THR A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 140 O GLU A 140 4556 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 161 CG HIS A 161 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 98 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -165.68 -104.10 REMARK 500 ASN A 171 53.66 -141.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GLMU EXISTS AS A BIFUNCTIONAL ENZYME IN MANY BACTERIA INCLUDING MTU, REMARK 600 CATALYSING TWO CONSECUTIVE REACTIONS-FIRST, ACETYLTRANSFERASE REMARK 600 REACTION CONVERTING ALPHA-D-GLUCOSAMINE-1-PHOSPHATE (GLCN1P)(NAG) REMARK 600 TO N-ACETYL-ALPHA-D-GLUCOSAMINE-1-PHOSPHATE (GLCNAC1P)(NDG). REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B8V RELATED DB: PDB REMARK 900 CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BETA-1,4- REMARK 900 LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER DBREF 4B9H A -28 199 UNP B3VBK9 B3VBK9_PASFU 1 228 SEQRES 1 A 228 MET GLN SER MET ILE LEU PHE ALA ALA ALA LEU MET GLY SEQRES 2 A 228 ALA ALA VAL ASN GLY PHE VAL LEU PRO ARG THR ASP ASP SEQRES 3 A 228 PRO ASP CYS GLU THR LYS ALA THR ASP CYS GLY SER THR SEQRES 4 A 228 SER ASN ILE LYS TYR THR VAL VAL LYS GLY ASP THR LEU SEQRES 5 A 228 THR SER ILE ALA LYS LYS PHE LYS SER GLY ILE CYS ASN SEQRES 6 A 228 ILE VAL SER VAL ASN LYS LEU ALA ASN PRO ASN LEU ILE SEQRES 7 A 228 GLU LEU GLY ALA THR LEU ILE ILE PRO GLU ASN CYS SER SEQRES 8 A 228 ASN PRO ASP ASN LYS SER CYS VAL SER THR PRO ALA GLU SEQRES 9 A 228 PRO THR GLU THR CYS VAL PRO GLY LEU PRO GLY SER TYR SEQRES 10 A 228 THR ILE VAL SER GLY ASP THR LEU THR ASN ILE SER GLN SEQRES 11 A 228 ASP PHE ASN ILE THR LEU ASP SER LEU ILE ALA ALA ASN SEQRES 12 A 228 THR GLN ILE GLU ASN PRO ASP ALA ILE ASP VAL GLY GLN SEQRES 13 A 228 ILE ILE THR VAL PRO VAL CYS PRO SER SER GLN CYS GLU SEQRES 14 A 228 ALA VAL GLY THR TYR ASN ILE VAL ALA GLY ASP LEU PHE SEQRES 15 A 228 VAL ASP LEU ALA ALA THR TYR HIS THR THR ILE GLY GLN SEQRES 16 A 228 ILE LYS ALA LEU ASN ASN ASN VAL ASN PRO SER LYS LEU SEQRES 17 A 228 LYS VAL GLY GLN GLN ILE ILE LEU PRO GLN ASP CYS LYS SEQRES 18 A 228 ASN VAL THR THR ALA VAL ALA MODRES 4B9H ASN A 104 ASN GLYCOSYLATION SITE MODRES 4B9H ASN A 193 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NDG C 1 15 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NAG A1198 14 HET I3C A1203 16 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM I3C 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID HETSYN I3C 5-AMINO-2,4,6-TRIIODOISOPHTHALIC ACID FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 3 NDG C8 H15 N O6 FORMUL 5 I3C C8 H4 I3 N O4 FORMUL 6 HOH *53(H2 O) HELIX 1 1 THR A 22 LYS A 31 1 10 HELIX 2 2 GLY A 33 LYS A 42 1 10 HELIX 3 3 THR A 95 PHE A 103 1 9 HELIX 4 4 THR A 106 ALA A 113 1 8 HELIX 5 5 LEU A 152 HIS A 161 1 10 HELIX 6 6 THR A 163 ASN A 171 1 9 SHEET 1 AA 2 SER A 11 THR A 16 0 SHEET 2 AA 2 THR A 54 GLU A 59 -1 O LEU A 55 N TYR A 15 SHEET 1 AB 2 SER A 87 THR A 89 0 SHEET 2 AB 2 ILE A 128 THR A 130 -1 O ILE A 129 N TYR A 88 SHEET 1 AC 2 SER A 137 ASN A 146 0 SHEET 2 AC 2 GLN A 184 ASN A 193 -1 O ILE A 185 N TYR A 145 SSBOND 1 CYS A 7 CYS A 61 1555 1555 2.02 SSBOND 2 CYS A 35 CYS A 69 1555 1555 2.06 SSBOND 3 CYS A 80 CYS A 134 1555 1555 2.04 SSBOND 4 CYS A 139 CYS A 191 1555 1555 2.06 LINK ND2 ASN A 104 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 193 C1 NAG A1198 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.47 LINK O4 NDG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.45 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.41 CISPEP 1 LEU A 84 PRO A 85 0 -12.45 CRYST1 57.889 57.889 119.679 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017274 0.009973 0.000000 0.00000 SCALE2 0.000000 0.019947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000