HEADER HYDROLASE 14-SEP-12 4BAP TITLE HEN EGG-WHITE LYSOZYME STRUCTURE IN COMPLEX WITH THE EUROPIUM TRIS- TITLE 2 HYDROXYETHYLCHOLINETRIAZOLEDIPICOLINATE COMPLEX AT 1.21 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV, GAL D 4, COMPND 5 HEWL, MURAMIDASE, MUCOPEPTIDE N-ACETYLMURAMOYL-HYDROLASE; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKENS, BANTAM; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: EGG; SOURCE 6 OTHER_DETAILS: ROCHE APPLIED SCIENCE POWDER, CATALOG NUMBER SOURCE 7 10837059001 KEYWDS HYDROLASE, CLICK-CHEMISTRY, ANOMALOUS SCATTERING, DE NOVO PHASING, KEYWDS 2 EXPERIMENTAL PHASING, LANTHANIDE COMPLEX, DIPICOLINATE EXPDTA X-RAY DIFFRACTION AUTHOR R.TALON,R.KAHN,A.GAUTIER,L.NAUTON,E.GIRARD REVDAT 4 06-MAR-19 4BAP 1 REMARK REVDAT 3 25-MAR-15 4BAP 1 JRNL REVDAT 2 28-NOV-12 4BAP 1 JRNL REVDAT 1 14-NOV-12 4BAP 0 JRNL AUTH R.TALON,L.NAUTON,J.-L.CANET,R.KAHN,E.GIRARD,A.GAUTIER JRNL TITL CLICKED EUROPIUM DIPICOLINATE COMPLEXES FOR PROTEIN X-RAY JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 48 11886 2012 JRNL REFN ISSN 1359-7345 JRNL PMID 23123834 JRNL DOI 10.1039/C2CC36982F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.POMPIDOR,A.D'ALEO,J.VICAT,L.TOUPET,N.GIRAUD,R.KAHN,O.MAURY REMARK 1 TITL PROTEIN CRYSTALLOGRAPHY THROUGH SUPRAMOLECULAR INTERACTIONS REMARK 1 TITL 2 BETWEEN A LANTHANIDE COMPLEX AND ARGININE. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. V. 47 3388 2008 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 18350532 REMARK 1 DOI 10.1002/ANIE.200704683 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.POMPIDOR,O.MAURY,J.VICAT,R.KAHN REMARK 1 TITL A DIPICOLINATE LANTHANIDE COMPLEX FOR SOLVING PROTEIN REMARK 1 TITL 2 STRUCTURES USING ANOMALOUS DIFFRACTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 762 2010 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 20606256 REMARK 1 DOI 10.1107/S0907444910010954 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.GIRARD,L.CHANTALAT,J.VICAT,R.KAHN REMARK 1 TITL GD-HPDO3A, A COMPLEX TO OBTAIN HIGH-PHASING-POWER HEAVY-ATOM REMARK 1 TITL 2 DERIVATIVES FOR SAD AND MAD EXPERIMENTS: RESULTS WITH REMARK 1 TITL 3 TETRAGONAL HEN EGG-WHITE LYSOZYME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11752774 REMARK 1 DOI 10.1107/S0907444901016444 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7745 - 2.8380 0.97 2807 150 0.1707 0.1692 REMARK 3 2 2.8380 - 2.2526 1.00 2724 142 0.1551 0.1816 REMARK 3 3 2.2526 - 1.9679 1.00 2698 143 0.1438 0.1642 REMARK 3 4 1.9679 - 1.7880 1.00 2674 141 0.1405 0.1871 REMARK 3 5 1.7880 - 1.6598 1.00 2660 139 0.1329 0.1882 REMARK 3 6 1.6598 - 1.5620 1.00 2666 141 0.1349 0.1545 REMARK 3 7 1.5620 - 1.4837 1.00 2646 140 0.1367 0.1625 REMARK 3 8 1.4837 - 1.4191 1.00 2629 138 0.1464 0.1596 REMARK 3 9 1.4191 - 1.3645 1.00 2649 139 0.1611 0.2138 REMARK 3 10 1.3645 - 1.3174 1.00 2625 138 0.1784 0.2069 REMARK 3 11 1.3174 - 1.2762 1.00 2620 138 0.1867 0.2059 REMARK 3 12 1.2762 - 1.2397 1.00 2627 138 0.2115 0.1922 REMARK 3 13 1.2397 - 1.2071 0.98 2576 136 0.2342 0.2749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07300 REMARK 3 B22 (A**2) : 0.07300 REMARK 3 B33 (A**2) : -0.14590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1236 REMARK 3 ANGLE : 1.252 1689 REMARK 3 CHIRALITY : 0.088 161 REMARK 3 PLANARITY : 0.005 221 REMARK 3 DIHEDRAL : 25.572 526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:43) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9973 5.3562 4.8874 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0492 REMARK 3 T33: 0.0593 T12: 0.0062 REMARK 3 T13: -0.0118 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.6342 L22: 1.3426 REMARK 3 L33: 1.2629 L12: 0.5555 REMARK 3 L13: 0.6215 L23: -0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.0503 S13: 0.1402 REMARK 3 S21: -0.0859 S22: -0.0028 S23: 0.0487 REMARK 3 S31: -0.1016 S32: -0.0532 S33: 0.0681 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 44:82) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5023 -7.4612 17.8975 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0980 REMARK 3 T33: 0.0680 T12: -0.0079 REMARK 3 T13: -0.0104 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.0029 L22: 3.4325 REMARK 3 L33: 1.9682 L12: -0.0734 REMARK 3 L13: -0.5581 L23: 0.6418 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.2322 S13: -0.1188 REMARK 3 S21: 0.2482 S22: -0.0228 S23: 0.0173 REMARK 3 S31: 0.0931 S32: 0.1445 S33: 0.0585 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 83:122) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7819 2.8706 10.9551 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0447 REMARK 3 T33: 0.0661 T12: -0.0054 REMARK 3 T13: -0.0077 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.2122 L22: 0.9826 REMARK 3 L33: 1.8172 L12: 0.2297 REMARK 3 L13: -0.4642 L23: 0.1444 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.1863 S13: -0.0084 REMARK 3 S21: -0.0082 S22: -0.0130 S23: -0.0096 REMARK 3 S31: 0.0114 S32: 0.0755 S33: -0.0125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 123:129) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4472 12.0806 -4.1369 REMARK 3 T TENSOR REMARK 3 T11: 0.2148 T22: 0.1150 REMARK 3 T33: 0.1779 T12: 0.0175 REMARK 3 T13: 0.0273 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 3.6428 L22: 7.5336 REMARK 3 L33: 2.9304 L12: -3.3188 REMARK 3 L13: 2.2484 L23: -3.2171 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.2203 S13: 0.4740 REMARK 3 S21: -0.1601 S22: 0.0530 S23: -0.0064 REMARK 3 S31: -0.3660 S32: -0.0323 S33: -0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 1133) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0919 1.6918 -8.9968 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1924 REMARK 3 T33: 0.0893 T12: 0.0010 REMARK 3 T13: -0.0125 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.2464 L22: 1.9290 REMARK 3 L33: 1.8424 L12: 0.6288 REMARK 3 L13: 0.5199 L23: 0.8334 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: 0.1502 S13: 0.0952 REMARK 3 S21: -0.1256 S22: 0.0414 S23: 0.1179 REMARK 3 S31: 0.0125 S32: -0.0238 S33: -0.0240 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 1130:1132) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9949 -2.8699 15.7086 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.2072 REMARK 3 T33: 0.2959 T12: -0.0388 REMARK 3 T13: -0.0136 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.0001 REMARK 3 L33: 0.0004 L12: 0.0002 REMARK 3 L13: 0.0003 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.1782 S12: 1.7089 S13: 0.9713 REMARK 3 S21: 0.0727 S22: -1.0882 S23: 2.2093 REMARK 3 S31: 0.2081 S32: -1.5715 S33: 1.2786 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ACCORDING TO THE HIGH RESOLUTION, REMARK 3 ANISOTROPIC ADP REFINEMENT WAS APPLIED FOR ALL ATOMS LIGAND REMARK 3 OCCUPANCIES WERE FIXED ACCORDING TO THE LANTHANIDE ION REMARK 3 OCCUPANCIES REMARK 4 REMARK 4 4BAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : EITHER 111 OR 311 SILICON SINGLE REMARK 200 CRISTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 30 2009 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36469 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 38.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M REMARK 280 SODIUM CHLORIDE, 0.00067 M PROTEIN, 0.012 M LANTHANIDE COMPLEX, REMARK 280 293 K, 3-7 DAYS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.24100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.75450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.86150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.75450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.62050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.75450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.75450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.86150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.75450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.75450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.62050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.24100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2065 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2088 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2066 O HOH A 2067 1.98 REMARK 500 O HOH A 2129 O HOH A 2130 2.02 REMARK 500 O5 DCJ A 1132 O HOH A 2146 2.09 REMARK 500 NH1 ARG A 21 O HOH A 2037 2.11 REMARK 500 OE1 GLN A 121 O HOH A 2136 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2067 O HOH A 2067 8555 1.80 REMARK 500 O HOH A 2091 O HOH A 2144 1556 1.94 REMARK 500 O HOH A 2059 O HOH A 2086 8555 2.14 REMARK 500 O HOH A 2039 O HOH A 2059 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 28.80 -141.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EU3 A1144 EU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCJ A1131 O3 REMARK 620 2 DCJ A1131 N1 61.7 REMARK 620 3 DCJ A1131 O1 126.8 65.2 REMARK 620 4 DCJ A1132 O3 76.1 133.9 149.3 REMARK 620 5 DCJ A1132 N1 74.1 116.2 135.8 64.4 REMARK 620 6 DCJ A1132 O1 89.5 72.0 76.9 128.1 63.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1142 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD2 REMARK 620 2 ARG A 68 NE 94.3 REMARK 620 3 ARG A 68 NE 108.2 20.1 REMARK 620 4 THR A 69 OG1 69.2 129.8 120.2 REMARK 620 5 THR A 51 OG1 93.9 83.9 97.3 141.8 REMARK 620 6 GLY A 49 O 155.9 106.2 89.0 87.8 100.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1143 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2081 O REMARK 620 2 SER A 72 OG 81.5 REMARK 620 3 HOH A2083 O 79.0 87.6 REMARK 620 4 SER A 60 O 98.7 86.1 173.5 REMARK 620 5 ARG A 73 O 169.2 101.0 90.5 92.0 REMARK 620 6 CYS A 64 O 87.2 167.0 96.7 89.3 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCJ A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCJ A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCJ A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1138 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1142 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EU3 A 1144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BAD RELATED DB: PDB REMARK 900 HEN EGG-WHITE LYSOZYME STRUCTURE IN COMPLEX WITH THE EUROPIUM TRIS- REMARK 900 HYDROXYMETHYLTRIAZOLEDIPICOLINATE COMPLEX AT 1.35 A RESOLUTION. REMARK 900 RELATED ID: 4BAF RELATED DB: PDB REMARK 900 HEN EGG-WHITE LYSOZYME STRUCTURE IN COMPLEX WITH THE EUROPIUM TRIS- REMARK 900 HYDROXYETHYLTRIAZOLEDIPICOLINATE COMPLEX AT 1.51 A RESOLUTION. DBREF 4BAP A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET DCJ A1130 48 HET DCJ A1131 24 HET DCJ A1132 24 HET ACT A1133 4 HET CL A1134 1 HET CL A1135 1 HET CL A1136 1 HET CL A1137 1 HET CL A1138 1 HET CL A1139 1 HET CL A1140 1 HET CL A1141 1 HET NA A1142 1 HET NA A1143 1 HET EU3 A1144 1 HETNAM DCJ N-((1-(2,6-DICARBOXYPYRIDIN-4-YL)-1H-1,2,3-TRIAZOL-4- HETNAM 2 DCJ YL)METHYL)-2-HYDROXY-N,N-DIMETHYLETHANAMINIUM HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EU3 EUROPIUM (III) ION HETSYN DCJ HYDROXYETHYLCHOLINETRIAZOLEDIPICOLINATE FORMUL 2 DCJ 3(C14 H18 N5 O5 1+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 CL 8(CL 1-) FORMUL 14 NA 2(NA 1+) FORMUL 16 EU3 EU 3+ FORMUL 17 HOH *146(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 SER A 24 ASN A 37 1 14 HELIX 3 3 CYS A 80 SER A 85 5 6 HELIX 4 4 ILE A 88 SER A 100 1 13 HELIX 5 5 ASN A 103 ALA A 107 5 5 HELIX 6 6 TRP A 108 CYS A 115 1 8 HELIX 7 7 ASP A 119 ARG A 125 5 7 SHEET 1 AA 3 THR A 43 ARG A 45 0 SHEET 2 AA 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK O3 DCJ A1131 EU EU3 A1144 1555 1555 2.56 LINK N1 DCJ A1131 EU EU3 A1144 1555 1555 2.61 LINK O1 DCJ A1131 EU EU3 A1144 1555 1555 2.51 LINK O3 DCJ A1132 EU EU3 A1144 1555 1555 2.54 LINK N1 DCJ A1132 EU EU3 A1144 1555 1555 2.59 LINK O1 DCJ A1132 EU EU3 A1144 1555 1555 2.57 LINK NA NA A1142 OD2 ASP A 66 1555 1555 2.77 LINK NA NA A1142 NE AARG A 68 1555 1555 3.01 LINK NA NA A1142 NE BARG A 68 1555 1555 2.78 LINK NA NA A1142 OG1 THR A 69 1555 1555 3.04 LINK NA NA A1142 OG1 THR A 51 1555 1555 2.71 LINK NA NA A1142 O GLY A 49 1555 1555 2.85 LINK NA NA A1143 O HOH A2081 1555 1555 2.52 LINK NA NA A1143 OG SER A 72 1555 1555 2.51 LINK NA NA A1143 O HOH A2083 1555 1555 2.53 LINK NA NA A1143 O SER A 60 1555 1555 2.35 LINK NA NA A1143 O ARG A 73 1555 1555 2.51 LINK NA NA A1143 O CYS A 64 1555 1555 2.45 SITE 1 AC1 16 LYS A 1 GLY A 4 ARG A 5 GLU A 7 SITE 2 AC1 16 ARG A 14 ARG A 73 LEU A 75 ASP A 87 SITE 3 AC1 16 THR A 89 DCJ A1131 DCJ A1132 EU3 A1144 SITE 4 AC1 16 HOH A2011 HOH A2091 HOH A2142 HOH A2144 SITE 1 AC2 14 ARG A 5 LYS A 33 PHE A 38 GLY A 117 SITE 2 AC2 14 ALA A 122 TRP A 123 DCJ A1130 DCJ A1132 SITE 3 AC2 14 EU3 A1144 HOH A2013 HOH A2117 HOH A2127 SITE 4 AC2 14 HOH A2132 HOH A2137 SITE 1 AC3 12 TRP A 62 TRP A 63 ASP A 101 ASN A 103 SITE 2 AC3 12 ARG A 125 DCJ A1130 DCJ A1131 EU3 A1144 SITE 3 AC3 12 HOH A2051 HOH A2133 HOH A2143 HOH A2146 SITE 1 AC4 6 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AC4 6 ALA A 107 TRP A 108 SITE 1 AC5 4 SER A 24 GLY A 26 GLN A 121 HOH A2042 SITE 1 AC6 4 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 1 AC7 6 GLY A 22 SER A 24 ASN A 27 ARG A 114 SITE 2 AC7 6 HOH A2031 HOH A2043 SITE 1 AC8 2 ILE A 88 HOH A2024 SITE 1 AC9 4 ALA A 42 ARG A 68 HOH A2055 HOH A2056 SITE 1 BC1 6 ASN A 27 TRP A 111 LYS A 116 GLY A 117 SITE 2 BC1 6 HOH A2122 HOH A2127 SITE 1 BC2 4 ASN A 74 ILE A 78 PRO A 79 HOH A2085 SITE 1 BC3 2 TYR A 23 ASN A 113 SITE 1 BC4 7 ARG A 45 GLY A 49 SER A 50 THR A 51 SITE 2 BC4 7 ASP A 66 ARG A 68 THR A 69 SITE 1 BC5 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 BC5 6 HOH A2081 HOH A2083 SITE 1 BC6 3 DCJ A1130 DCJ A1131 DCJ A1132 CRYST1 77.509 77.509 38.482 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025986 0.00000