data_4BF8 # _entry.id 4BF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4BF8 pdb_00004bf8 10.2210/pdb4bf8/pdb PDBE EBI-56157 ? ? WWPDB D_1290056157 ? ? BMRB 17713 ? ? # _pdbx_database_related.db_id 17713 _pdbx_database_related.details . _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BF8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-03-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Monneau, Y.' 1 'Mackereth, C.' 2 # _citation.id primary _citation.title ;Structure and Activity of the Peptidyl-Prolyl Isomerase Domain from the Histone Chaperone Fpr4 Towards Histone H3 Proline Isomerization ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 25826 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23888048 _citation.pdbx_database_id_DOI 10.1074/JBC.M113.479964 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Monneau, Y.R.' 1 ? primary 'Soufari, H.' 2 ? primary 'Nelson, C.J.' 3 ? primary 'Mackereth, C.D.' 4 ? # _cell.entry_id 4BF8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BF8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description FPR4 _entity.formula_weight 12502.853 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.2.1.8 _entity.pdbx_mutation ? _entity.pdbx_fragment 'PEPTIDYL PROLINE ISOMERASE (PPI) DOMAIN, RESIDUES 280-392' _entity.details 'C-TERMINAL PEPTIDYL PROLYL CIS-TRANS ISOMERASE DOMAIN FROM YEAST FPR4P' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMAKPKTKLLEGGIIIEDRVTGKGPHAKKGTRVGMRYVGKLKNGKVFDKNTKGKPFVFKLGQGEVIKGWDIGVAGMAVG GERRIVIPAPYAYGKQALPGIPANSELTFDVKLVSMK ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMAKPKTKLLEGGIIIEDRVTGKGPHAKKGTRVGMRYVGKLKNGKVFDKNTKGKPFVFKLGQGEVIKGWDIGVAGMAVG GERRIVIPAPYAYGKQALPGIPANSELTFDVKLVSMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 LYS n 1 6 PRO n 1 7 LYS n 1 8 THR n 1 9 LYS n 1 10 LEU n 1 11 LEU n 1 12 GLU n 1 13 GLY n 1 14 GLY n 1 15 ILE n 1 16 ILE n 1 17 ILE n 1 18 GLU n 1 19 ASP n 1 20 ARG n 1 21 VAL n 1 22 THR n 1 23 GLY n 1 24 LYS n 1 25 GLY n 1 26 PRO n 1 27 HIS n 1 28 ALA n 1 29 LYS n 1 30 LYS n 1 31 GLY n 1 32 THR n 1 33 ARG n 1 34 VAL n 1 35 GLY n 1 36 MET n 1 37 ARG n 1 38 TYR n 1 39 VAL n 1 40 GLY n 1 41 LYS n 1 42 LEU n 1 43 LYS n 1 44 ASN n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 PHE n 1 49 ASP n 1 50 LYS n 1 51 ASN n 1 52 THR n 1 53 LYS n 1 54 GLY n 1 55 LYS n 1 56 PRO n 1 57 PHE n 1 58 VAL n 1 59 PHE n 1 60 LYS n 1 61 LEU n 1 62 GLY n 1 63 GLN n 1 64 GLY n 1 65 GLU n 1 66 VAL n 1 67 ILE n 1 68 LYS n 1 69 GLY n 1 70 TRP n 1 71 ASP n 1 72 ILE n 1 73 GLY n 1 74 VAL n 1 75 ALA n 1 76 GLY n 1 77 MET n 1 78 ALA n 1 79 VAL n 1 80 GLY n 1 81 GLY n 1 82 GLU n 1 83 ARG n 1 84 ARG n 1 85 ILE n 1 86 VAL n 1 87 ILE n 1 88 PRO n 1 89 ALA n 1 90 PRO n 1 91 TYR n 1 92 ALA n 1 93 TYR n 1 94 GLY n 1 95 LYS n 1 96 GLN n 1 97 ALA n 1 98 LEU n 1 99 PRO n 1 100 GLY n 1 101 ILE n 1 102 PRO n 1 103 ALA n 1 104 ASN n 1 105 SER n 1 106 GLU n 1 107 LEU n 1 108 THR n 1 109 PHE n 1 110 ASP n 1 111 VAL n 1 112 LYS n 1 113 LEU n 1 114 VAL n 1 115 SER n 1 116 MET n 1 117 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;BAKER'S YEAST ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SACCHAROMYCES CEREVISIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant PLYSY _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'MODIFIED PET-9D' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FKBP4_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q06205 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BF8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q06205 _struct_ref_seq.db_align_beg 280 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 392 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 280 _struct_ref_seq.pdbx_auth_seq_align_end 392 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4BF8 GLY A 1 ? UNP Q06205 ? ? 'expression tag' 276 1 1 4BF8 ALA A 2 ? UNP Q06205 ? ? 'expression tag' 277 2 1 4BF8 MET A 3 ? UNP Q06205 ? ? 'expression tag' 278 3 1 4BF8 ALA A 4 ? UNP Q06205 ? ? 'expression tag' 279 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 1H 1 2 1 '15N-NOESY (120MS MIXING TIME)' 1 3 1 1H 1 4 1 '15N-TROSY (RDC)' 1 5 1 1H 1 6 1 '13C-NOESY (120 MS MIXING TIME)' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 292.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O, 100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AVANCE Bruker 800 2 AVANCE Bruker 700 # _pdbx_nmr_refine.entry_id 4BF8 _pdbx_nmr_refine.method ARIA1.2 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 4BF8 _pdbx_nmr_details.text ;STRUCTURE CALCULATION USED A COMBINATION OF DISTANCE RESTRAINTS (UNAMBIGUOUS AND AMBIGUOUS), DIHEDRAL ANGLE RESTRAINTS, HYDROGEN-BOND RESTRAINTS AND RESIDUAL DIPOLAR COUPLING RESTRAINTS ; # _pdbx_nmr_ensemble.entry_id 4BF8 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST ENERGY' # _pdbx_nmr_representative.entry_id 4BF8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' NMRPipe ? ? 2 'structure solution' Sparky ? ? 3 # _exptl.entry_id 4BF8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 4BF8 _struct.title 'Fpr4 PPI domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BF8 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'ISOMERASE, PROLINE ISOMERIZATION, FKBP, HISTONE CHAPERONE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 67 ? VAL A 74 ? ILE A 342 VAL A 349 1 ? 8 HELX_P HELX_P2 2 PRO A 88 ? ALA A 92 ? PRO A 363 ALA A 367 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 6 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 8 ? LEU A 10 ? THR A 283 LEU A 285 AA 2 ILE A 16 ? VAL A 21 ? ILE A 291 VAL A 296 AA 3 GLU A 82 ? ILE A 87 ? GLU A 357 ILE A 362 AA 4 LEU A 107 ? MET A 116 ? LEU A 382 MET A 391 AA 5 ARG A 33 ? LEU A 42 ? ARG A 308 LEU A 317 AA 6 VAL A 47 ? ASN A 51 ? VAL A 322 ASN A 326 AB 1 THR A 8 ? LEU A 10 ? THR A 283 LEU A 285 AB 2 ILE A 16 ? VAL A 21 ? ILE A 291 VAL A 296 AB 3 GLU A 82 ? ILE A 87 ? GLU A 357 ILE A 362 AB 4 LEU A 107 ? MET A 116 ? LEU A 382 MET A 391 AB 5 ARG A 33 ? LEU A 42 ? ARG A 308 LEU A 317 AB 6 PHE A 57 ? LYS A 60 ? PHE A 332 LYS A 335 AC 1 VAL A 47 ? ASN A 51 ? VAL A 322 ASN A 326 AC 2 ARG A 33 ? LEU A 42 ? ARG A 308 LEU A 317 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 9 ? N LYS A 284 O ILE A 17 ? O ILE A 292 AA 2 3 N VAL A 21 ? N VAL A 296 O GLU A 82 ? O GLU A 357 AA 3 4 N ILE A 87 ? N ILE A 362 O LEU A 107 ? O LEU A 382 AA 4 5 N VAL A 114 ? N VAL A 389 O GLY A 35 ? O GLY A 310 AA 5 6 O GLY A 40 ? O GLY A 315 N PHE A 48 ? N PHE A 323 AB 1 2 N LYS A 9 ? N LYS A 284 O ILE A 17 ? O ILE A 292 AB 2 3 N VAL A 21 ? N VAL A 296 O GLU A 82 ? O GLU A 357 AB 3 4 N ILE A 87 ? N ILE A 362 O LEU A 107 ? O LEU A 382 AB 4 5 N VAL A 114 ? N VAL A 389 O GLY A 35 ? O GLY A 310 AB 5 6 N MET A 36 ? N MET A 311 O PHE A 57 ? O PHE A 332 AC 1 2 N ASN A 51 ? N ASN A 326 O TYR A 38 ? O TYR A 313 # _database_PDB_matrix.entry_id 4BF8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BF8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 276 276 GLY GLY A . n A 1 2 ALA 2 277 277 ALA ALA A . n A 1 3 MET 3 278 278 MET MET A . n A 1 4 ALA 4 279 279 ALA ALA A . n A 1 5 LYS 5 280 280 LYS LYS A . n A 1 6 PRO 6 281 281 PRO PRO A . n A 1 7 LYS 7 282 282 LYS LYS A . n A 1 8 THR 8 283 283 THR THR A . n A 1 9 LYS 9 284 284 LYS LYS A . n A 1 10 LEU 10 285 285 LEU LEU A . n A 1 11 LEU 11 286 286 LEU LEU A . n A 1 12 GLU 12 287 287 GLU GLU A . n A 1 13 GLY 13 288 288 GLY GLY A . n A 1 14 GLY 14 289 289 GLY GLY A . n A 1 15 ILE 15 290 290 ILE ILE A . n A 1 16 ILE 16 291 291 ILE ILE A . n A 1 17 ILE 17 292 292 ILE ILE A . n A 1 18 GLU 18 293 293 GLU GLU A . n A 1 19 ASP 19 294 294 ASP ASP A . n A 1 20 ARG 20 295 295 ARG ARG A . n A 1 21 VAL 21 296 296 VAL VAL A . n A 1 22 THR 22 297 297 THR THR A . n A 1 23 GLY 23 298 298 GLY GLY A . n A 1 24 LYS 24 299 299 LYS LYS A . n A 1 25 GLY 25 300 300 GLY GLY A . n A 1 26 PRO 26 301 301 PRO PRO A . n A 1 27 HIS 27 302 302 HIS HIS A . n A 1 28 ALA 28 303 303 ALA ALA A . n A 1 29 LYS 29 304 304 LYS LYS A . n A 1 30 LYS 30 305 305 LYS LYS A . n A 1 31 GLY 31 306 306 GLY GLY A . n A 1 32 THR 32 307 307 THR THR A . n A 1 33 ARG 33 308 308 ARG ARG A . n A 1 34 VAL 34 309 309 VAL VAL A . n A 1 35 GLY 35 310 310 GLY GLY A . n A 1 36 MET 36 311 311 MET MET A . n A 1 37 ARG 37 312 312 ARG ARG A . n A 1 38 TYR 38 313 313 TYR TYR A . n A 1 39 VAL 39 314 314 VAL VAL A . n A 1 40 GLY 40 315 315 GLY GLY A . n A 1 41 LYS 41 316 316 LYS LYS A . n A 1 42 LEU 42 317 317 LEU LEU A . n A 1 43 LYS 43 318 318 LYS LYS A . n A 1 44 ASN 44 319 319 ASN ASN A . n A 1 45 GLY 45 320 320 GLY GLY A . n A 1 46 LYS 46 321 321 LYS LYS A . n A 1 47 VAL 47 322 322 VAL VAL A . n A 1 48 PHE 48 323 323 PHE PHE A . n A 1 49 ASP 49 324 324 ASP ASP A . n A 1 50 LYS 50 325 325 LYS LYS A . n A 1 51 ASN 51 326 326 ASN ASN A . n A 1 52 THR 52 327 327 THR THR A . n A 1 53 LYS 53 328 328 LYS LYS A . n A 1 54 GLY 54 329 329 GLY GLY A . n A 1 55 LYS 55 330 330 LYS LYS A . n A 1 56 PRO 56 331 331 PRO PRO A . n A 1 57 PHE 57 332 332 PHE PHE A . n A 1 58 VAL 58 333 333 VAL VAL A . n A 1 59 PHE 59 334 334 PHE PHE A . n A 1 60 LYS 60 335 335 LYS LYS A . n A 1 61 LEU 61 336 336 LEU LEU A . n A 1 62 GLY 62 337 337 GLY GLY A . n A 1 63 GLN 63 338 338 GLN GLN A . n A 1 64 GLY 64 339 339 GLY GLY A . n A 1 65 GLU 65 340 340 GLU GLU A . n A 1 66 VAL 66 341 341 VAL VAL A . n A 1 67 ILE 67 342 342 ILE ILE A . n A 1 68 LYS 68 343 343 LYS LYS A . n A 1 69 GLY 69 344 344 GLY GLY A . n A 1 70 TRP 70 345 345 TRP TRP A . n A 1 71 ASP 71 346 346 ASP ASP A . n A 1 72 ILE 72 347 347 ILE ILE A . n A 1 73 GLY 73 348 348 GLY GLY A . n A 1 74 VAL 74 349 349 VAL VAL A . n A 1 75 ALA 75 350 350 ALA ALA A . n A 1 76 GLY 76 351 351 GLY GLY A . n A 1 77 MET 77 352 352 MET MET A . n A 1 78 ALA 78 353 353 ALA ALA A . n A 1 79 VAL 79 354 354 VAL VAL A . n A 1 80 GLY 80 355 355 GLY GLY A . n A 1 81 GLY 81 356 356 GLY GLY A . n A 1 82 GLU 82 357 357 GLU GLU A . n A 1 83 ARG 83 358 358 ARG ARG A . n A 1 84 ARG 84 359 359 ARG ARG A . n A 1 85 ILE 85 360 360 ILE ILE A . n A 1 86 VAL 86 361 361 VAL VAL A . n A 1 87 ILE 87 362 362 ILE ILE A . n A 1 88 PRO 88 363 363 PRO PRO A . n A 1 89 ALA 89 364 364 ALA ALA A . n A 1 90 PRO 90 365 365 PRO PRO A . n A 1 91 TYR 91 366 366 TYR TYR A . n A 1 92 ALA 92 367 367 ALA ALA A . n A 1 93 TYR 93 368 368 TYR TYR A . n A 1 94 GLY 94 369 369 GLY GLY A . n A 1 95 LYS 95 370 370 LYS LYS A . n A 1 96 GLN 96 371 371 GLN GLN A . n A 1 97 ALA 97 372 372 ALA ALA A . n A 1 98 LEU 98 373 373 LEU LEU A . n A 1 99 PRO 99 374 374 PRO PRO A . n A 1 100 GLY 100 375 375 GLY GLY A . n A 1 101 ILE 101 376 376 ILE ILE A . n A 1 102 PRO 102 377 377 PRO PRO A . n A 1 103 ALA 103 378 378 ALA ALA A . n A 1 104 ASN 104 379 379 ASN ASN A . n A 1 105 SER 105 380 380 SER SER A . n A 1 106 GLU 106 381 381 GLU GLU A . n A 1 107 LEU 107 382 382 LEU LEU A . n A 1 108 THR 108 383 383 THR THR A . n A 1 109 PHE 109 384 384 PHE PHE A . n A 1 110 ASP 110 385 385 ASP ASP A . n A 1 111 VAL 111 386 386 VAL VAL A . n A 1 112 LYS 112 387 387 LYS LYS A . n A 1 113 LEU 113 388 388 LEU LEU A . n A 1 114 VAL 114 389 389 VAL VAL A . n A 1 115 SER 115 390 390 SER SER A . n A 1 116 MET 116 391 391 MET MET A . n A 1 117 LYS 117 392 392 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2013-08-07 3 'Structure model' 1 2 2013-09-25 4 'Structure model' 1 3 2016-05-04 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_nmr_software 4 5 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.status_code_cs' 4 5 'Structure model' '_pdbx_database_status.status_code_mr' 5 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 5 'Structure model' '_pdbx_nmr_software.name' 7 5 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_entry_details.entry_id 4BF8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CONTAINS N-TERMINAL GLY-ALA-MET-ALA- RESIDUES FOLLOWING CLEAVAGE OF THE HIS6-TAG BY TEV PROTEAS ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 284 ? ? OD2 A ASP 294 ? ? 1.53 2 4 HZ1 A LYS 318 ? ? OE2 A GLU 381 ? ? 1.60 3 8 HG23 A THR 283 ? ? HG2 A GLU 293 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 280 ? ? 56.51 84.14 2 1 LEU A 286 ? ? -108.32 -161.83 3 1 LYS A 325 ? ? -174.44 135.81 4 1 THR A 327 ? ? -140.63 -46.80 5 1 ALA A 367 ? ? -125.39 -110.81 6 2 THR A 327 ? ? -163.07 -33.92 7 2 ALA A 367 ? ? -119.52 -125.09 8 3 MET A 278 ? ? 66.54 96.29 9 3 LYS A 282 ? ? -156.97 23.47 10 3 THR A 327 ? ? -164.05 -45.04 11 3 ALA A 367 ? ? -116.58 -105.30 12 4 LYS A 282 ? ? -75.30 -166.71 13 4 THR A 327 ? ? -161.84 -42.51 14 4 TYR A 368 ? ? -165.46 -32.46 15 4 ASN A 379 ? ? 73.66 -8.16 16 5 ALA A 279 ? ? 62.22 78.00 17 5 LYS A 280 ? ? 70.67 161.23 18 5 LYS A 325 ? ? -176.55 143.48 19 5 THR A 327 ? ? -150.70 -55.39 20 5 ALA A 367 ? ? -127.56 -116.43 21 6 THR A 327 ? ? -142.16 -40.83 22 6 ALA A 367 ? ? -127.06 -109.60 23 7 LYS A 280 ? ? 70.83 140.82 24 7 THR A 327 ? ? -157.00 -38.89 25 7 ALA A 367 ? ? -122.24 -106.04 26 8 MET A 278 ? ? 69.06 -1.93 27 8 LEU A 286 ? ? -101.78 -169.50 28 8 ARG A 295 ? ? -105.76 -60.30 29 8 THR A 327 ? ? -160.73 -49.44 30 8 ALA A 367 ? ? -110.76 -119.30 31 9 ALA A 277 ? ? 57.46 87.14 32 9 LYS A 280 ? ? 69.65 90.94 33 9 LEU A 286 ? ? -105.62 -166.71 34 9 THR A 327 ? ? -162.26 -43.49 35 9 ALA A 350 ? ? -65.79 96.84 36 9 ALA A 367 ? ? -120.10 -109.22 37 10 LYS A 280 ? ? 70.98 133.32 38 10 LEU A 286 ? ? -108.54 -164.56 39 10 THR A 327 ? ? -148.96 -47.17 40 10 ALA A 367 ? ? -126.59 -108.05 41 11 MET A 278 ? ? 61.53 101.23 42 11 LYS A 280 ? ? -167.37 108.53 43 11 THR A 327 ? ? -155.29 -58.79 44 11 LYS A 328 ? ? -68.05 92.01 45 11 ALA A 367 ? ? -129.23 -107.57 46 11 ASN A 379 ? ? 71.97 32.16 47 12 ALA A 279 ? ? 65.78 153.18 48 12 LYS A 280 ? ? 67.70 127.32 49 12 THR A 327 ? ? -149.76 -69.25 50 12 LYS A 328 ? ? -68.41 97.28 51 12 ALA A 367 ? ? -119.31 -112.52 #