data_4BLF # _entry.id 4BLF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BLF PDBE EBI-56281 WWPDB D_1290056281 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-2339 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details 'VARIABLE INTERNAL FLEXIBILITY CHARACTERIZES THE HELICAL HELICAL CAPSID FORMED BY AGROBACTERIUM VIRE2 PROTEIN ON SINGLE-STRANDED DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BLF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-05-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bharat, T.A.M.' 1 'Zbaida, D.' 2 'Eisenstein, M.' 3 'Frankenstein, Z.' 4 'Mehlman, T.' 5 'Weiner, L.' 6 'Sorzano, C.O.S.' 7 'Barak, Y.' 8 'Albeck, S.' 9 'Briggs, J.A.G.' 10 'Wolf, S.G.' 11 'Elbaum, M.' 12 # _citation.id primary _citation.title 'Variable Internal Flexibility Characterizes the Helical Capsid Formed by Agrobacterium Vire2 Protein on Single-Stranded DNA.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1158 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23769668 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.04.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bharat, T.A.M.' 1 primary 'Zbaida, D.' 2 primary 'Eisenstein, M.' 3 primary 'Frankenstein, Z.' 4 primary 'Mehlman, T.' 5 primary 'Weiner, L.' 6 primary 'Sorzano, C.O.S.' 7 primary 'Barak, Y.' 8 primary 'Albeck, S.' 9 primary 'Briggs, J.A.G.' 10 primary 'Wolf, S.G.' 11 primary 'Elbaum, M.' 12 # _cell.entry_id 4BLF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BLF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SINGLE-STRAND DNA-BINDING PROTEIN' _entity.formula_weight 26667.943 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-TERMINAL DOMAIN, RESIDUES 112-337' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '63.5 KDA VIRULENCE PROTEIN, VIRE2 PROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RRTDEYILVRQTGQDKFAGTTKCNLDHLPTKAEFNASCRLYRDGVGNYYPPPLAFERIDLPEQLAAQLHNLEPREQSKQC FQYKLEVWNRAHAEMGITGTDIFYQTDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKRYEHQFQAGSLLPDILIKTPQND IHFSYRFAGDAYANKRFEEFERAIKTKYGSDTEIKLKSKSGIMHDSKYLESWERGSADIRFAEFAG ; _entity_poly.pdbx_seq_one_letter_code_can ;RRTDEYILVRQTGQDKFAGTTKCNLDHLPTKAEFNASCRLYRDGVGNYYPPPLAFERIDLPEQLAAQLHNLEPREQSKQC FQYKLEVWNRAHAEMGITGTDIFYQTDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKRYEHQFQAGSLLPDILIKTPQND IHFSYRFAGDAYANKRFEEFERAIKTKYGSDTEIKLKSKSGIMHDSKYLESWERGSADIRFAEFAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ARG n 1 3 THR n 1 4 ASP n 1 5 GLU n 1 6 TYR n 1 7 ILE n 1 8 LEU n 1 9 VAL n 1 10 ARG n 1 11 GLN n 1 12 THR n 1 13 GLY n 1 14 GLN n 1 15 ASP n 1 16 LYS n 1 17 PHE n 1 18 ALA n 1 19 GLY n 1 20 THR n 1 21 THR n 1 22 LYS n 1 23 CYS n 1 24 ASN n 1 25 LEU n 1 26 ASP n 1 27 HIS n 1 28 LEU n 1 29 PRO n 1 30 THR n 1 31 LYS n 1 32 ALA n 1 33 GLU n 1 34 PHE n 1 35 ASN n 1 36 ALA n 1 37 SER n 1 38 CYS n 1 39 ARG n 1 40 LEU n 1 41 TYR n 1 42 ARG n 1 43 ASP n 1 44 GLY n 1 45 VAL n 1 46 GLY n 1 47 ASN n 1 48 TYR n 1 49 TYR n 1 50 PRO n 1 51 PRO n 1 52 PRO n 1 53 LEU n 1 54 ALA n 1 55 PHE n 1 56 GLU n 1 57 ARG n 1 58 ILE n 1 59 ASP n 1 60 LEU n 1 61 PRO n 1 62 GLU n 1 63 GLN n 1 64 LEU n 1 65 ALA n 1 66 ALA n 1 67 GLN n 1 68 LEU n 1 69 HIS n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 PRO n 1 74 ARG n 1 75 GLU n 1 76 GLN n 1 77 SER n 1 78 LYS n 1 79 GLN n 1 80 CYS n 1 81 PHE n 1 82 GLN n 1 83 TYR n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 VAL n 1 88 TRP n 1 89 ASN n 1 90 ARG n 1 91 ALA n 1 92 HIS n 1 93 ALA n 1 94 GLU n 1 95 MET n 1 96 GLY n 1 97 ILE n 1 98 THR n 1 99 GLY n 1 100 THR n 1 101 ASP n 1 102 ILE n 1 103 PHE n 1 104 TYR n 1 105 GLN n 1 106 THR n 1 107 ASP n 1 108 LYS n 1 109 ASN n 1 110 ILE n 1 111 LYS n 1 112 LEU n 1 113 ASP n 1 114 ARG n 1 115 ASN n 1 116 TYR n 1 117 LYS n 1 118 LEU n 1 119 ARG n 1 120 PRO n 1 121 GLU n 1 122 ASP n 1 123 ARG n 1 124 TYR n 1 125 ILE n 1 126 GLN n 1 127 THR n 1 128 GLU n 1 129 LYS n 1 130 TYR n 1 131 GLY n 1 132 ARG n 1 133 ARG n 1 134 GLU n 1 135 ILE n 1 136 GLN n 1 137 LYS n 1 138 ARG n 1 139 TYR n 1 140 GLU n 1 141 HIS n 1 142 GLN n 1 143 PHE n 1 144 GLN n 1 145 ALA n 1 146 GLY n 1 147 SER n 1 148 LEU n 1 149 LEU n 1 150 PRO n 1 151 ASP n 1 152 ILE n 1 153 LEU n 1 154 ILE n 1 155 LYS n 1 156 THR n 1 157 PRO n 1 158 GLN n 1 159 ASN n 1 160 ASP n 1 161 ILE n 1 162 HIS n 1 163 PHE n 1 164 SER n 1 165 TYR n 1 166 ARG n 1 167 PHE n 1 168 ALA n 1 169 GLY n 1 170 ASP n 1 171 ALA n 1 172 TYR n 1 173 ALA n 1 174 ASN n 1 175 LYS n 1 176 ARG n 1 177 PHE n 1 178 GLU n 1 179 GLU n 1 180 PHE n 1 181 GLU n 1 182 ARG n 1 183 ALA n 1 184 ILE n 1 185 LYS n 1 186 THR n 1 187 LYS n 1 188 TYR n 1 189 GLY n 1 190 SER n 1 191 ASP n 1 192 THR n 1 193 GLU n 1 194 ILE n 1 195 LYS n 1 196 LEU n 1 197 LYS n 1 198 SER n 1 199 LYS n 1 200 SER n 1 201 GLY n 1 202 ILE n 1 203 MET n 1 204 HIS n 1 205 ASP n 1 206 SER n 1 207 LYS n 1 208 TYR n 1 209 LEU n 1 210 GLU n 1 211 SER n 1 212 TRP n 1 213 GLU n 1 214 ARG n 1 215 GLY n 1 216 SER n 1 217 ALA n 1 218 ASP n 1 219 ILE n 1 220 ARG n 1 221 PHE n 1 222 ALA n 1 223 GLU n 1 224 PHE n 1 225 ALA n 1 226 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'AGROBACTERIUM TUMEFACIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 358 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIRE2_AGRT5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P08062 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BLF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08062 _struct_ref_seq.db_align_beg 112 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 112 _struct_ref_seq.pdbx_auth_seq_align_end 337 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4BLF _struct_ref_seq_dif.mon_id LEU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 60 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P08062 _struct_ref_seq_dif.db_mon_id ILE _struct_ref_seq_dif.pdbx_seq_db_seq_num 171 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 171 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4BLF _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4BLF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 20.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1863 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1863 _refine_hist.d_res_high 20.00 _refine_hist.d_res_low . # _struct.entry_id 4BLF _struct.title 'Variable internal flexibility characterizes the helical capsid formed by Agrobacterium VirE2 protein on single-stranded DNA.' _struct.pdbx_descriptor 'SINGLE-STRAND DNA-BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BLF _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA BINDING PROTEIN, TCOMPLEX, AGROBACTERIUM, HELICAL RECONSTRUCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 23 ? LEU A 25 ? CYS A 134 LEU A 136 5 ? 3 HELX_P HELX_P2 2 THR A 30 ? SER A 37 ? THR A 141 SER A 148 1 ? 8 HELX_P HELX_P3 3 PRO A 50 ? ARG A 57 ? PRO A 161 ARG A 168 1 ? 8 HELX_P HELX_P4 4 PRO A 61 ? GLN A 67 ? PRO A 172 GLN A 178 1 ? 7 HELX_P HELX_P5 5 ARG A 74 ? GLY A 96 ? ARG A 185 GLY A 207 1 ? 23 HELX_P HELX_P6 6 ARG A 119 ? ASP A 122 ? ARG A 230 ASP A 233 5 ? 4 HELX_P HELX_P7 7 ARG A 176 ? GLY A 189 ? ARG A 287 GLY A 300 1 ? 14 HELX_P HELX_P8 8 SER A 206 ? GLU A 213 ? SER A 317 GLU A 324 1 ? 8 HELX_P HELX_P9 9 GLY A 215 ? ALA A 225 ? GLY A 326 ALA A 336 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 72 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 183 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 73 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 184 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -29.73 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 2 ? AC ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 16 ? THR A 21 ? LYS A 127 THR A 132 AA 2 TYR A 6 ? GLY A 13 ? TYR A 117 GLY A 124 AA 3 CYS A 38 ? ARG A 42 ? CYS A 149 ARG A 153 AA 4 TYR A 48 ? TYR A 49 ? TYR A 159 TYR A 160 AB 1 TYR A 124 ? GLN A 126 ? TYR A 235 GLN A 237 AB 2 ARG A 132 ? GLU A 134 ? ARG A 243 GLU A 245 AC 1 ILE A 161 ? SER A 164 ? ILE A 272 SER A 275 AC 2 ILE A 152 ? LYS A 155 ? ILE A 263 LYS A 266 AC 3 GLU A 193 ? LYS A 197 ? GLU A 304 LYS A 308 AC 4 MET A 203 ? ASP A 205 ? MET A 314 ASP A 316 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 20 ? N THR A 131 O LEU A 8 ? O LEU A 119 AA 2 3 N VAL A 9 ? N VAL A 120 O CYS A 38 ? O CYS A 149 AA 3 4 N TYR A 41 ? N TYR A 152 O TYR A 49 ? O TYR A 160 AB 1 2 N ILE A 125 ? N ILE A 236 O ARG A 133 ? O ARG A 244 AC 1 2 N SER A 164 ? N SER A 275 O ILE A 152 ? O ILE A 263 AC 2 3 N LYS A 155 ? N LYS A 266 O GLU A 193 ? O GLU A 304 AC 3 4 N LEU A 196 ? N LEU A 307 O HIS A 204 ? O HIS A 315 # _database_PDB_matrix.entry_id 4BLF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BLF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 112 112 ARG ARG A . n A 1 2 ARG 2 113 113 ARG ARG A . n A 1 3 THR 3 114 114 THR THR A . n A 1 4 ASP 4 115 115 ASP ASP A . n A 1 5 GLU 5 116 116 GLU GLU A . n A 1 6 TYR 6 117 117 TYR TYR A . n A 1 7 ILE 7 118 118 ILE ILE A . n A 1 8 LEU 8 119 119 LEU LEU A . n A 1 9 VAL 9 120 120 VAL VAL A . n A 1 10 ARG 10 121 121 ARG ARG A . n A 1 11 GLN 11 122 122 GLN GLN A . n A 1 12 THR 12 123 123 THR THR A . n A 1 13 GLY 13 124 124 GLY GLY A . n A 1 14 GLN 14 125 125 GLN GLN A . n A 1 15 ASP 15 126 126 ASP ASP A . n A 1 16 LYS 16 127 127 LYS LYS A . n A 1 17 PHE 17 128 128 PHE PHE A . n A 1 18 ALA 18 129 129 ALA ALA A . n A 1 19 GLY 19 130 130 GLY GLY A . n A 1 20 THR 20 131 131 THR THR A . n A 1 21 THR 21 132 132 THR THR A . n A 1 22 LYS 22 133 133 LYS LYS A . n A 1 23 CYS 23 134 134 CYS CYS A . n A 1 24 ASN 24 135 135 ASN ASN A . n A 1 25 LEU 25 136 136 LEU LEU A . n A 1 26 ASP 26 137 137 ASP ASP A . n A 1 27 HIS 27 138 138 HIS HIS A . n A 1 28 LEU 28 139 139 LEU LEU A . n A 1 29 PRO 29 140 140 PRO PRO A . n A 1 30 THR 30 141 141 THR THR A . n A 1 31 LYS 31 142 142 LYS LYS A . n A 1 32 ALA 32 143 143 ALA ALA A . n A 1 33 GLU 33 144 144 GLU GLU A . n A 1 34 PHE 34 145 145 PHE PHE A . n A 1 35 ASN 35 146 146 ASN ASN A . n A 1 36 ALA 36 147 147 ALA ALA A . n A 1 37 SER 37 148 148 SER SER A . n A 1 38 CYS 38 149 149 CYS CYS A . n A 1 39 ARG 39 150 150 ARG ARG A . n A 1 40 LEU 40 151 151 LEU LEU A . n A 1 41 TYR 41 152 152 TYR TYR A . n A 1 42 ARG 42 153 153 ARG ARG A . n A 1 43 ASP 43 154 154 ASP ASP A . n A 1 44 GLY 44 155 155 GLY GLY A . n A 1 45 VAL 45 156 156 VAL VAL A . n A 1 46 GLY 46 157 157 GLY GLY A . n A 1 47 ASN 47 158 158 ASN ASN A . n A 1 48 TYR 48 159 159 TYR TYR A . n A 1 49 TYR 49 160 160 TYR TYR A . n A 1 50 PRO 50 161 161 PRO PRO A . n A 1 51 PRO 51 162 162 PRO PRO A . n A 1 52 PRO 52 163 163 PRO PRO A . n A 1 53 LEU 53 164 164 LEU LEU A . n A 1 54 ALA 54 165 165 ALA ALA A . n A 1 55 PHE 55 166 166 PHE PHE A . n A 1 56 GLU 56 167 167 GLU GLU A . n A 1 57 ARG 57 168 168 ARG ARG A . n A 1 58 ILE 58 169 169 ILE ILE A . n A 1 59 ASP 59 170 170 ASP ASP A . n A 1 60 LEU 60 171 171 LEU LEU A . n A 1 61 PRO 61 172 172 PRO PRO A . n A 1 62 GLU 62 173 173 GLU GLU A . n A 1 63 GLN 63 174 174 GLN GLN A . n A 1 64 LEU 64 175 175 LEU LEU A . n A 1 65 ALA 65 176 176 ALA ALA A . n A 1 66 ALA 66 177 177 ALA ALA A . n A 1 67 GLN 67 178 178 GLN GLN A . n A 1 68 LEU 68 179 179 LEU LEU A . n A 1 69 HIS 69 180 ? ? ? A . n A 1 70 ASN 70 181 ? ? ? A . n A 1 71 LEU 71 182 182 LEU LEU A . n A 1 72 GLU 72 183 183 GLU GLU A . n A 1 73 PRO 73 184 184 PRO PRO A . n A 1 74 ARG 74 185 185 ARG ARG A . n A 1 75 GLU 75 186 186 GLU GLU A . n A 1 76 GLN 76 187 187 GLN GLN A . n A 1 77 SER 77 188 188 SER SER A . n A 1 78 LYS 78 189 189 LYS LYS A . n A 1 79 GLN 79 190 190 GLN GLN A . n A 1 80 CYS 80 191 191 CYS CYS A . n A 1 81 PHE 81 192 192 PHE PHE A . n A 1 82 GLN 82 193 193 GLN GLN A . n A 1 83 TYR 83 194 194 TYR TYR A . n A 1 84 LYS 84 195 195 LYS LYS A . n A 1 85 LEU 85 196 196 LEU LEU A . n A 1 86 GLU 86 197 197 GLU GLU A . n A 1 87 VAL 87 198 198 VAL VAL A . n A 1 88 TRP 88 199 199 TRP TRP A . n A 1 89 ASN 89 200 200 ASN ASN A . n A 1 90 ARG 90 201 201 ARG ARG A . n A 1 91 ALA 91 202 202 ALA ALA A . n A 1 92 HIS 92 203 203 HIS HIS A . n A 1 93 ALA 93 204 204 ALA ALA A . n A 1 94 GLU 94 205 205 GLU GLU A . n A 1 95 MET 95 206 206 MET MET A . n A 1 96 GLY 96 207 207 GLY GLY A . n A 1 97 ILE 97 208 208 ILE ILE A . n A 1 98 THR 98 209 209 THR THR A . n A 1 99 GLY 99 210 210 GLY GLY A . n A 1 100 THR 100 211 211 THR THR A . n A 1 101 ASP 101 212 212 ASP ASP A . n A 1 102 ILE 102 213 213 ILE ILE A . n A 1 103 PHE 103 214 214 PHE PHE A . n A 1 104 TYR 104 215 215 TYR TYR A . n A 1 105 GLN 105 216 216 GLN GLN A . n A 1 106 THR 106 217 217 THR THR A . n A 1 107 ASP 107 218 218 ASP ASP A . n A 1 108 LYS 108 219 219 LYS LYS A . n A 1 109 ASN 109 220 220 ASN ASN A . n A 1 110 ILE 110 221 221 ILE ILE A . n A 1 111 LYS 111 222 222 LYS LYS A . n A 1 112 LEU 112 223 223 LEU LEU A . n A 1 113 ASP 113 224 224 ASP ASP A . n A 1 114 ARG 114 225 225 ARG ARG A . n A 1 115 ASN 115 226 226 ASN ASN A . n A 1 116 TYR 116 227 227 TYR TYR A . n A 1 117 LYS 117 228 228 LYS LYS A . n A 1 118 LEU 118 229 229 LEU LEU A . n A 1 119 ARG 119 230 230 ARG ARG A . n A 1 120 PRO 120 231 231 PRO PRO A . n A 1 121 GLU 121 232 232 GLU GLU A . n A 1 122 ASP 122 233 233 ASP ASP A . n A 1 123 ARG 123 234 234 ARG ARG A . n A 1 124 TYR 124 235 235 TYR TYR A . n A 1 125 ILE 125 236 236 ILE ILE A . n A 1 126 GLN 126 237 237 GLN GLN A . n A 1 127 THR 127 238 238 THR THR A . n A 1 128 GLU 128 239 239 GLU GLU A . n A 1 129 LYS 129 240 240 LYS LYS A . n A 1 130 TYR 130 241 241 TYR TYR A . n A 1 131 GLY 131 242 242 GLY GLY A . n A 1 132 ARG 132 243 243 ARG ARG A . n A 1 133 ARG 133 244 244 ARG ARG A . n A 1 134 GLU 134 245 245 GLU GLU A . n A 1 135 ILE 135 246 246 ILE ILE A . n A 1 136 GLN 136 247 247 GLN GLN A . n A 1 137 LYS 137 248 248 LYS LYS A . n A 1 138 ARG 138 249 249 ARG ARG A . n A 1 139 TYR 139 250 250 TYR TYR A . n A 1 140 GLU 140 251 251 GLU GLU A . n A 1 141 HIS 141 252 252 HIS HIS A . n A 1 142 GLN 142 253 253 GLN GLN A . n A 1 143 PHE 143 254 254 PHE PHE A . n A 1 144 GLN 144 255 255 GLN GLN A . n A 1 145 ALA 145 256 256 ALA ALA A . n A 1 146 GLY 146 257 257 GLY GLY A . n A 1 147 SER 147 258 258 SER SER A . n A 1 148 LEU 148 259 259 LEU LEU A . n A 1 149 LEU 149 260 260 LEU LEU A . n A 1 150 PRO 150 261 261 PRO PRO A . n A 1 151 ASP 151 262 262 ASP ASP A . n A 1 152 ILE 152 263 263 ILE ILE A . n A 1 153 LEU 153 264 264 LEU LEU A . n A 1 154 ILE 154 265 265 ILE ILE A . n A 1 155 LYS 155 266 266 LYS LYS A . n A 1 156 THR 156 267 267 THR THR A . n A 1 157 PRO 157 268 268 PRO PRO A . n A 1 158 GLN 158 269 269 GLN GLN A . n A 1 159 ASN 159 270 270 ASN ASN A . n A 1 160 ASP 160 271 271 ASP ASP A . n A 1 161 ILE 161 272 272 ILE ILE A . n A 1 162 HIS 162 273 273 HIS HIS A . n A 1 163 PHE 163 274 274 PHE PHE A . n A 1 164 SER 164 275 275 SER SER A . n A 1 165 TYR 165 276 276 TYR TYR A . n A 1 166 ARG 166 277 277 ARG ARG A . n A 1 167 PHE 167 278 278 PHE PHE A . n A 1 168 ALA 168 279 279 ALA ALA A . n A 1 169 GLY 169 280 280 GLY GLY A . n A 1 170 ASP 170 281 281 ASP ASP A . n A 1 171 ALA 171 282 282 ALA ALA A . n A 1 172 TYR 172 283 283 TYR TYR A . n A 1 173 ALA 173 284 284 ALA ALA A . n A 1 174 ASN 174 285 285 ASN ASN A . n A 1 175 LYS 175 286 286 LYS LYS A . n A 1 176 ARG 176 287 287 ARG ARG A . n A 1 177 PHE 177 288 288 PHE PHE A . n A 1 178 GLU 178 289 289 GLU GLU A . n A 1 179 GLU 179 290 290 GLU GLU A . n A 1 180 PHE 180 291 291 PHE PHE A . n A 1 181 GLU 181 292 292 GLU GLU A . n A 1 182 ARG 182 293 293 ARG ARG A . n A 1 183 ALA 183 294 294 ALA ALA A . n A 1 184 ILE 184 295 295 ILE ILE A . n A 1 185 LYS 185 296 296 LYS LYS A . n A 1 186 THR 186 297 297 THR THR A . n A 1 187 LYS 187 298 298 LYS LYS A . n A 1 188 TYR 188 299 299 TYR TYR A . n A 1 189 GLY 189 300 300 GLY GLY A . n A 1 190 SER 190 301 301 SER SER A . n A 1 191 ASP 191 302 302 ASP ASP A . n A 1 192 THR 192 303 303 THR THR A . n A 1 193 GLU 193 304 304 GLU GLU A . n A 1 194 ILE 194 305 305 ILE ILE A . n A 1 195 LYS 195 306 306 LYS LYS A . n A 1 196 LEU 196 307 307 LEU LEU A . n A 1 197 LYS 197 308 308 LYS LYS A . n A 1 198 SER 198 309 309 SER SER A . n A 1 199 LYS 199 310 310 LYS LYS A . n A 1 200 SER 200 311 311 SER SER A . n A 1 201 GLY 201 312 312 GLY GLY A . n A 1 202 ILE 202 313 313 ILE ILE A . n A 1 203 MET 203 314 314 MET MET A . n A 1 204 HIS 204 315 315 HIS HIS A . n A 1 205 ASP 205 316 316 ASP ASP A . n A 1 206 SER 206 317 317 SER SER A . n A 1 207 LYS 207 318 318 LYS LYS A . n A 1 208 TYR 208 319 319 TYR TYR A . n A 1 209 LEU 209 320 320 LEU LEU A . n A 1 210 GLU 210 321 321 GLU GLU A . n A 1 211 SER 211 322 322 SER SER A . n A 1 212 TRP 212 323 323 TRP TRP A . n A 1 213 GLU 213 324 324 GLU GLU A . n A 1 214 ARG 214 325 325 ARG ARG A . n A 1 215 GLY 215 326 326 GLY GLY A . n A 1 216 SER 216 327 327 SER SER A . n A 1 217 ALA 217 328 328 ALA ALA A . n A 1 218 ASP 218 329 329 ASP ASP A . n A 1 219 ILE 219 330 330 ILE ILE A . n A 1 220 ARG 220 331 331 ARG ARG A . n A 1 221 PHE 221 332 332 PHE PHE A . n A 1 222 ALA 222 333 333 ALA ALA A . n A 1 223 GLU 223 334 334 GLU GLU A . n A 1 224 PHE 224 335 335 PHE PHE A . n A 1 225 ALA 225 336 336 ALA ALA A . n A 1 226 GLY 226 337 337 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2017-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_3d_fitting 2 3 'Structure model' em_image_scans 3 3 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_3d_fitting.target_criteria' 2 3 'Structure model' '_em_software.fitting_id' 3 3 'Structure model' '_em_software.image_processing_id' 4 3 'Structure model' '_em_software.name' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4BLF _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3BTP _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 4BLF _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 8019 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size 4.32 _em_3d_reconstruction.actual_pixel_size 4.32 _em_3d_reconstruction.resolution 20 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;PARTICLES WERE PRE-SELECTED USING XMIPP, AND RECONSTRUCTION WAS CARRIED OUT USING IHRSR PROGRAM IMPLEMENTED IN THE SPIDER PACKAGE. THIS ATOMIC STRUCTURE WAS FITTED INTO THE CRYOEM ENVELOPE USING FITPDB2EM. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2339. (DEPOSITION ID: 11520). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM TRIS, 500 MM NACL' _em_buffer.pH 8 _em_buffer.details '50 MM TRIS, 500 MM NACL' # _em_entity_assembly.id 1 _em_entity_assembly.name 'CRYOEM RECONSTRUCTION OF THE AGROBACTERIUM T-COMPLEX' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'MICROGRAPHS IN WHICH THON RINGS WERE VISIBLE BEYOND 13 ANGSTROEMS WERE SELECTED.' _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 4BLF _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2008-06-06 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3200 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4BLF _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 95, INSTRUMENT- HOMEMADE PLUNGER' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4BLF _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 167 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NZ _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 195 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.88 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 116 ? ? CD A GLU 116 ? ? 1.609 1.515 0.094 0.015 N 2 1 CA A ALA 165 ? ? CB A ALA 165 ? ? 1.661 1.520 0.141 0.021 N 3 1 C A GLU 167 ? ? N A ARG 168 ? ? 1.612 1.336 0.276 0.023 Y 4 1 N A ASP 170 ? ? CA A ASP 170 ? ? 1.621 1.459 0.162 0.020 N 5 1 CG A ASP 170 ? ? OD2 A ASP 170 ? ? 1.397 1.249 0.148 0.023 N 6 1 CA A LEU 171 ? ? CB A LEU 171 ? ? 1.671 1.533 0.138 0.023 N 7 1 CB A LEU 171 ? ? CG A LEU 171 ? ? 1.705 1.521 0.184 0.029 N 8 1 N A PRO 172 ? ? CA A PRO 172 ? ? 1.704 1.468 0.236 0.017 N 9 1 CG A PRO 172 ? ? CD A PRO 172 ? ? 1.787 1.502 0.285 0.033 N 10 1 CD A PRO 172 ? ? N A PRO 172 ? ? 1.634 1.474 0.160 0.014 N 11 1 CA A PRO 172 ? ? C A PRO 172 ? ? 1.783 1.524 0.259 0.020 N 12 1 C A PRO 172 ? ? O A PRO 172 ? ? 1.349 1.228 0.121 0.020 N 13 1 N A GLU 173 ? ? CA A GLU 173 ? ? 1.734 1.459 0.275 0.020 N 14 1 CA A GLU 173 ? ? CB A GLU 173 ? ? 1.723 1.535 0.188 0.022 N 15 1 CB A GLU 173 ? ? CG A GLU 173 ? ? 1.842 1.517 0.325 0.019 N 16 1 CG A GLU 173 ? ? CD A GLU 173 ? ? 1.806 1.515 0.291 0.015 N 17 1 CD A GLU 173 ? ? OE1 A GLU 173 ? ? 1.447 1.252 0.195 0.011 N 18 1 CD A GLU 173 ? ? OE2 A GLU 173 ? ? 1.461 1.252 0.209 0.011 N 19 1 C A GLU 173 ? ? O A GLU 173 ? ? 1.417 1.229 0.188 0.019 N 20 1 CA A GLN 174 ? ? CB A GLN 174 ? ? 1.777 1.535 0.242 0.022 N 21 1 CB A GLN 174 ? ? CG A GLN 174 ? ? 1.773 1.521 0.252 0.027 N 22 1 CG A GLN 174 ? ? CD A GLN 174 ? ? 1.809 1.506 0.303 0.023 N 23 1 CD A GLN 174 ? ? OE1 A GLN 174 ? ? 1.405 1.235 0.170 0.022 N 24 1 C A GLN 174 ? ? O A GLN 174 ? ? 1.396 1.229 0.167 0.019 N 25 1 C A GLN 174 ? ? N A LEU 175 ? ? 1.560 1.336 0.224 0.023 Y 26 1 N A LEU 175 ? ? CA A LEU 175 ? ? 1.624 1.459 0.165 0.020 N 27 1 CA A LEU 175 ? ? CB A LEU 175 ? ? 1.793 1.533 0.260 0.023 N 28 1 CG A LEU 175 ? ? CD1 A LEU 175 ? ? 1.770 1.514 0.256 0.037 N 29 1 CG A LEU 175 ? ? CD2 A LEU 175 ? ? 1.806 1.514 0.292 0.037 N 30 1 CA A LEU 175 ? ? C A LEU 175 ? ? 1.766 1.525 0.241 0.026 N 31 1 N A ALA 176 ? ? CA A ALA 176 ? ? 1.696 1.459 0.237 0.020 N 32 1 CA A ALA 176 ? ? C A ALA 176 ? ? 1.796 1.525 0.271 0.026 N 33 1 C A ALA 176 ? ? O A ALA 176 ? ? 1.352 1.229 0.123 0.019 N 34 1 C A ALA 176 ? ? N A ALA 177 ? ? 1.551 1.336 0.215 0.023 Y 35 1 N A ALA 177 ? ? CA A ALA 177 ? ? 1.739 1.459 0.280 0.020 N 36 1 CA A ALA 177 ? ? CB A ALA 177 ? ? 1.807 1.520 0.287 0.021 N 37 1 C A ALA 177 ? ? O A ALA 177 ? ? 1.427 1.229 0.198 0.019 N 38 1 C A ALA 177 ? ? N A GLN 178 ? ? 1.548 1.336 0.212 0.023 Y 39 1 CA A GLN 178 ? ? CB A GLN 178 ? ? 1.785 1.535 0.250 0.022 N 40 1 CG A GLN 178 ? ? CD A GLN 178 ? ? 1.791 1.506 0.285 0.023 N 41 1 CD A GLN 178 ? ? NE2 A GLN 178 ? ? 1.491 1.324 0.167 0.025 N 42 1 CA A GLN 178 ? ? C A GLN 178 ? ? 1.749 1.525 0.224 0.026 N 43 1 C A GLN 178 ? ? O A GLN 178 ? ? 1.357 1.229 0.128 0.019 N 44 1 C A GLN 178 ? ? N A LEU 179 ? ? 1.541 1.336 0.205 0.023 Y 45 1 N A LEU 179 ? ? CA A LEU 179 ? ? 1.729 1.459 0.270 0.020 N 46 1 CA A LEU 179 ? ? CB A LEU 179 ? ? 1.752 1.533 0.219 0.023 N 47 1 CB A LEU 179 ? ? CG A LEU 179 ? ? 1.752 1.521 0.231 0.029 N 48 1 CA A LEU 179 ? ? C A LEU 179 ? ? 1.742 1.525 0.217 0.026 N 49 1 N A LEU 182 ? ? CA A LEU 182 ? ? 1.649 1.459 0.190 0.020 N 50 1 CA A LEU 182 ? ? CB A LEU 182 ? ? 1.689 1.533 0.156 0.023 N 51 1 CG A LEU 182 ? ? CD2 A LEU 182 ? ? 1.769 1.514 0.255 0.037 N 52 1 C A LEU 182 ? ? N A GLU 183 ? ? 1.572 1.336 0.236 0.023 Y 53 1 N A GLU 183 ? ? CA A GLU 183 ? ? 1.597 1.459 0.138 0.020 N 54 1 CA A GLU 183 ? ? CB A GLU 183 ? ? 1.766 1.535 0.231 0.022 N 55 1 CB A GLU 183 ? ? CG A GLU 183 ? ? 1.750 1.517 0.233 0.019 N 56 1 CG A GLU 183 ? ? CD A GLU 183 ? ? 1.742 1.515 0.227 0.015 N 57 1 CD A GLU 183 ? ? OE1 A GLU 183 ? ? 1.391 1.252 0.139 0.011 N 58 1 CD A GLU 183 ? ? OE2 A GLU 183 ? ? 1.371 1.252 0.119 0.011 N 59 1 CA A GLU 183 ? ? C A GLU 183 ? ? 1.811 1.525 0.286 0.026 N 60 1 C A GLU 183 ? ? N A PRO 184 ? ? 1.483 1.338 0.145 0.019 Y 61 1 CA A PRO 184 ? ? CB A PRO 184 ? ? 1.747 1.533 0.214 0.018 N 62 1 CD A PRO 184 ? ? N A PRO 184 ? ? 1.716 1.474 0.242 0.014 N 63 1 CA A PRO 184 ? ? C A PRO 184 ? ? 1.770 1.524 0.246 0.020 N 64 1 C A PRO 184 ? ? N A ARG 185 ? ? 1.539 1.336 0.203 0.023 Y 65 1 N A ARG 185 ? ? CA A ARG 185 ? ? 1.732 1.459 0.273 0.020 N 66 1 CA A ARG 185 ? ? CB A ARG 185 ? ? 1.711 1.535 0.176 0.022 N 67 1 CB A ARG 185 ? ? CG A ARG 185 ? ? 1.759 1.521 0.238 0.027 N 68 1 CD A ARG 185 ? ? NE A ARG 185 ? ? 1.687 1.460 0.227 0.017 N 69 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? 1.536 1.326 0.210 0.013 N 70 1 CZ A ARG 185 ? ? NH1 A ARG 185 ? ? 1.407 1.326 0.081 0.013 N 71 1 CZ A ARG 185 ? ? NH2 A ARG 185 ? ? 1.519 1.326 0.193 0.013 N 72 1 CA A ARG 185 ? ? C A ARG 185 ? ? 1.739 1.525 0.214 0.026 N 73 1 C A ARG 185 ? ? O A ARG 185 ? ? 1.477 1.229 0.248 0.019 N 74 1 N A GLU 186 ? ? CA A GLU 186 ? ? 1.682 1.459 0.223 0.020 N 75 1 CG A GLU 186 ? ? CD A GLU 186 ? ? 1.776 1.515 0.261 0.015 N 76 1 CD A GLU 186 ? ? OE1 A GLU 186 ? ? 1.458 1.252 0.206 0.011 N 77 1 CD A GLU 186 ? ? OE2 A GLU 186 ? ? 1.427 1.252 0.175 0.011 N 78 1 C A GLU 186 ? ? O A GLU 186 ? ? 1.404 1.229 0.175 0.019 N 79 1 CA A GLN 187 ? ? CB A GLN 187 ? ? 1.696 1.535 0.161 0.022 N 80 1 CG A GLN 187 ? ? CD A GLN 187 ? ? 1.790 1.506 0.284 0.023 N 81 1 CA A GLN 187 ? ? C A GLN 187 ? ? 1.730 1.525 0.205 0.026 N 82 1 C A GLN 187 ? ? O A GLN 187 ? ? 1.424 1.229 0.195 0.019 N 83 1 N A SER 188 ? ? CA A SER 188 ? ? 1.667 1.459 0.208 0.020 N 84 1 CA A SER 188 ? ? CB A SER 188 ? ? 1.788 1.525 0.263 0.015 N 85 1 CB A SER 188 ? ? OG A SER 188 ? ? 1.511 1.418 0.093 0.013 N 86 1 CA A SER 188 ? ? C A SER 188 ? ? 1.703 1.525 0.178 0.026 N 87 1 C A SER 188 ? ? O A SER 188 ? ? 1.408 1.229 0.179 0.019 N 88 1 N A LYS 189 ? ? CA A LYS 189 ? ? 1.624 1.459 0.165 0.020 N 89 1 CB A LYS 189 ? ? CG A LYS 189 ? ? 1.712 1.521 0.191 0.027 N 90 1 CD A LYS 189 ? ? CE A LYS 189 ? ? 1.804 1.508 0.296 0.025 N 91 1 CE A LYS 189 ? ? NZ A LYS 189 ? ? 1.711 1.486 0.225 0.025 N 92 1 CA A LYS 189 ? ? C A LYS 189 ? ? 1.793 1.525 0.268 0.026 N 93 1 C A LYS 189 ? ? O A LYS 189 ? ? 1.435 1.229 0.206 0.019 N 94 1 N A GLN 190 ? ? CA A GLN 190 ? ? 1.691 1.459 0.232 0.020 N 95 1 CA A GLN 190 ? ? CB A GLN 190 ? ? 1.756 1.535 0.221 0.022 N 96 1 CG A GLN 190 ? ? CD A GLN 190 ? ? 1.691 1.506 0.185 0.023 N 97 1 CD A GLN 190 ? ? NE2 A GLN 190 ? ? 1.520 1.324 0.196 0.025 N 98 1 C A GLN 190 ? ? O A GLN 190 ? ? 1.419 1.229 0.190 0.019 N 99 1 CB A CYS 191 ? ? SG A CYS 191 ? ? 2.030 1.818 0.212 0.017 N 100 1 CA A CYS 191 ? ? C A CYS 191 ? ? 1.748 1.525 0.223 0.026 N 101 1 C A CYS 191 ? ? O A CYS 191 ? ? 1.375 1.229 0.146 0.019 N 102 1 CE2 A TYR 194 ? ? CD2 A TYR 194 ? ? 1.496 1.389 0.107 0.015 N 103 1 C A LYS 195 ? ? N A LEU 196 ? ? 1.496 1.336 0.160 0.023 Y 104 1 C A ARG 201 ? ? N A ALA 202 ? ? 1.168 1.336 -0.168 0.023 Y 105 1 C A THR 211 ? ? N A ASP 212 ? ? 1.497 1.336 0.161 0.023 Y 106 1 CB A GLU 324 ? ? CG A GLU 324 ? ? 1.646 1.517 0.129 0.019 N 107 1 CG A GLU 324 ? ? CD A GLU 324 ? ? 1.639 1.515 0.124 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 113 ? ? CZ A ARG 113 ? ? NH2 A ARG 113 ? ? 116.69 120.30 -3.61 0.50 N 2 1 CA A ILE 169 ? ? C A ILE 169 ? ? N A ASP 170 ? ? 139.78 117.20 22.58 2.20 Y 3 1 O A ILE 169 ? ? C A ILE 169 ? ? N A ASP 170 ? ? 97.12 122.70 -25.58 1.60 Y 4 1 CA A LEU 179 ? ? CB A LEU 179 ? ? CG A LEU 179 ? ? 134.75 115.30 19.45 2.30 N 5 1 N A GLU 183 ? ? CA A GLU 183 ? ? C A GLU 183 ? ? 132.11 111.00 21.11 2.70 N 6 1 CA A GLU 183 ? ? C A GLU 183 ? ? N A PRO 184 ? ? 135.14 117.10 18.04 2.80 Y 7 1 O A GLU 183 ? ? C A GLU 183 ? ? N A PRO 184 ? ? 109.35 121.10 -11.75 1.90 Y 8 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? NH2 A ARG 185 ? ? 125.25 120.30 4.95 0.50 N 9 1 O A GLN 187 ? ? C A GLN 187 ? ? N A SER 188 ? ? 133.47 122.70 10.77 1.60 Y 10 1 O A CYS 191 ? ? C A CYS 191 ? ? N A PHE 192 ? ? 132.56 122.70 9.86 1.60 Y 11 1 NE A ARG 201 ? ? CZ A ARG 201 ? ? NH1 A ARG 201 ? ? 123.52 120.30 3.22 0.50 N 12 1 NE A ARG 277 ? ? CZ A ARG 277 ? ? NH1 A ARG 277 ? ? 116.40 120.30 -3.90 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 173 ? ? -29.58 -57.09 2 1 GLN A 178 ? ? -62.07 66.19 3 1 GLU A 183 ? ? -143.51 -55.61 4 1 PRO A 184 ? ? -89.39 -130.18 5 1 ARG A 185 ? ? 29.16 -34.36 6 1 PHE A 214 ? ? 70.87 37.69 7 1 LEU A 259 ? ? -146.21 25.31 8 1 ASN A 270 ? ? 80.33 20.22 9 1 ASN A 285 ? ? 55.64 18.15 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 182 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 183 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.14 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LEU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 171 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.18 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A GLU 167 ? ? N A ARG 168 ? ? 1.61 2 1 C A ARG 201 ? ? N A ALA 202 ? ? 1.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 180 ? A HIS 69 2 1 Y 1 A ASN 181 ? A ASN 70 # _em_ctf_correction.id 1 _em_ctf_correction.details PHASE-FLIPPING _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GENERIC TVIPS' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 fitPDB2EM ? 'MODEL FITTING' ? ? ? 1 2 Bsoft ? RECONSTRUCTION ? 1 ? ? 3 EMAN ? RECONSTRUCTION ? 1 ? ? 4 IHRSR ? RECONSTRUCTION ? 1 ? ? 5 SPIDER ? RECONSTRUCTION ? 1 ? ? 6 Xmipp ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? #