data_4BOQ # _entry.id 4BOQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4BOQ pdb_00004boq 10.2210/pdb4boq/pdb PDBE EBI-56958 ? ? WWPDB D_1290056958 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4BOP _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF OTUD1 OTU DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BOQ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-05-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mevissen, T.E.T.' 1 'Hospenthal, M.K.' 2 'Geurink, P.P.' 3 'Elliott, P.R.' 4 'Akutsu, M.' 5 'Arnaudo, N.' 6 'Ekkebus, R.' 7 'Kulathu, Y.' 8 'Wauer, T.' 9 'El Oualid, F.' 10 'Freund, S.M.V.' 11 'Ovaa, H.' 12 'Komander, D.' 13 # _citation.id primary _citation.title 'Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 154 _citation.page_first 169 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23827681 _citation.pdbx_database_id_DOI 10.1016/J.CELL.2013.05.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mevissen, T.E.T.' 1 ? primary 'Hospenthal, M.K.' 2 ? primary 'Geurink, P.P.' 3 ? primary 'Elliott, P.R.' 4 ? primary 'Akutsu, M.' 5 ? primary 'Arnaudo, N.' 6 ? primary 'Ekkebus, R.' 7 ? primary 'Kulathu, Y.' 8 ? primary 'Wauer, T.' 9 ? primary 'El Oualid, F.' 10 ? primary 'Freund, S.M.V.' 11 ? primary 'Ovaa, H.' 12 ? primary 'Komander, D.' 13 ? # _cell.entry_id 4BOQ _cell.length_a 60.670 _cell.length_b 60.670 _cell.length_c 86.180 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BOQ _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UBIQUITIN THIOESTERASE OTU1' 20732.338 1 3.4.19.12 ? 'RESIDUES 132-314' ? 2 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 3 water nat water 18.015 130 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DUBA-8, HIV-1-INDUCED PROTEASE 7, HIN-7, HSHIN7, OTU DOMAIN-CONTAINING PROTEIN 2, OTUD2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCD WIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDD IVLVQALELADEARRRRQFTDVN ; _entity_poly.pdbx_seq_one_letter_code_can ;AFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCD WIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDD IVLVQALELADEARRRRQFTDVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PHE n 1 3 THR n 1 4 LYS n 1 5 ARG n 1 6 GLY n 1 7 ALA n 1 8 SER n 1 9 SER n 1 10 TYR n 1 11 VAL n 1 12 ARG n 1 13 GLU n 1 14 THR n 1 15 LEU n 1 16 PRO n 1 17 VAL n 1 18 LEU n 1 19 THR n 1 20 ARG n 1 21 THR n 1 22 VAL n 1 23 VAL n 1 24 PRO n 1 25 ALA n 1 26 ASP n 1 27 ASN n 1 28 SER n 1 29 CYS n 1 30 LEU n 1 31 PHE n 1 32 THR n 1 33 SER n 1 34 VAL n 1 35 TYR n 1 36 TYR n 1 37 VAL n 1 38 VAL n 1 39 GLU n 1 40 GLY n 1 41 GLY n 1 42 VAL n 1 43 LEU n 1 44 ASN n 1 45 PRO n 1 46 ALA n 1 47 CYS n 1 48 ALA n 1 49 PRO n 1 50 GLU n 1 51 MET n 1 52 ARG n 1 53 ARG n 1 54 LEU n 1 55 ILE n 1 56 ALA n 1 57 GLN n 1 58 ILE n 1 59 VAL n 1 60 ALA n 1 61 SER n 1 62 ASP n 1 63 PRO n 1 64 ASP n 1 65 PHE n 1 66 TYR n 1 67 SER n 1 68 GLU n 1 69 ALA n 1 70 ILE n 1 71 LEU n 1 72 GLY n 1 73 LYS n 1 74 THR n 1 75 ASN n 1 76 GLN n 1 77 GLU n 1 78 TYR n 1 79 CYS n 1 80 ASP n 1 81 TRP n 1 82 ILE n 1 83 LYS n 1 84 ARG n 1 85 ASP n 1 86 ASP n 1 87 THR n 1 88 TRP n 1 89 GLY n 1 90 GLY n 1 91 ALA n 1 92 ILE n 1 93 GLU n 1 94 ILE n 1 95 SER n 1 96 ILE n 1 97 LEU n 1 98 SER n 1 99 LYS n 1 100 PHE n 1 101 TYR n 1 102 GLN n 1 103 CYS n 1 104 GLU n 1 105 ILE n 1 106 CYS n 1 107 VAL n 1 108 VAL n 1 109 ASP n 1 110 THR n 1 111 GLN n 1 112 THR n 1 113 VAL n 1 114 ARG n 1 115 ILE n 1 116 ASP n 1 117 ARG n 1 118 PHE n 1 119 GLY n 1 120 GLU n 1 121 ASP n 1 122 ALA n 1 123 GLY n 1 124 TYR n 1 125 THR n 1 126 LYS n 1 127 ARG n 1 128 VAL n 1 129 LEU n 1 130 LEU n 1 131 ILE n 1 132 TYR n 1 133 ASP n 1 134 GLY n 1 135 ILE n 1 136 HIS n 1 137 TYR n 1 138 ASP n 1 139 PRO n 1 140 LEU n 1 141 GLN n 1 142 ARG n 1 143 ASN n 1 144 PHE n 1 145 PRO n 1 146 ASP n 1 147 PRO n 1 148 ASP n 1 149 THR n 1 150 PRO n 1 151 PRO n 1 152 LEU n 1 153 THR n 1 154 ILE n 1 155 PHE n 1 156 SER n 1 157 SER n 1 158 ASN n 1 159 ASP n 1 160 ASP n 1 161 ILE n 1 162 VAL n 1 163 LEU n 1 164 VAL n 1 165 GLN n 1 166 ALA n 1 167 LEU n 1 168 GLU n 1 169 LEU n 1 170 ALA n 1 171 ASP n 1 172 GLU n 1 173 ALA n 1 174 ARG n 1 175 ARG n 1 176 ARG n 1 177 ARG n 1 178 GLN n 1 179 PHE n 1 180 THR n 1 181 ASP n 1 182 VAL n 1 183 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA PLACI' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTU1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q5VVQ6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BOQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VVQ6 _struct_ref_seq.db_align_beg 132 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 314 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 132 _struct_ref_seq.pdbx_auth_seq_align_end 314 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4BOQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.03 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.8M SODIUM PHOSPHATE MONOBASIC MONOHYDRATE, 0.1 M TRIS PH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 287 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 0.97920 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4BOQ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.32 _reflns.d_resolution_high 1.47 _reflns.number_obs 30915 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.50 _reflns.B_iso_Wilson_estimate 17.49 _reflns.pdbx_redundancy 4.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.62 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.pdbx_redundancy 4.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4BOQ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30876 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.727 _refine.ls_d_res_high 1.470 _refine.ls_percent_reflns_obs 97.05 _refine.ls_R_factor_obs 0.1721 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1709 _refine.ls_R_factor_R_free 0.1950 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1554 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.4328 _refine.aniso_B[2][2] 2.4328 _refine.aniso_B[3][3] -4.8656 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.405 _refine.solvent_model_param_bsol 51.266 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3BY4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.pdbx_overall_phase_error 18.43 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1390 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 1544 _refine_hist.d_res_high 1.470 _refine_hist.d_res_low 28.727 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.020 ? ? 1520 'X-RAY DIFFRACTION' ? f_angle_d 2.065 ? ? 2084 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.830 ? ? 580 'X-RAY DIFFRACTION' ? f_chiral_restr 0.147 ? ? 236 'X-RAY DIFFRACTION' ? f_plane_restr 0.011 ? ? 272 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.4701 1.5175 2687 0.3124 99.00 0.3541 . . 140 . . 'X-RAY DIFFRACTION' . 1.5175 1.5718 2700 0.2719 100.00 0.2971 . . 133 . . 'X-RAY DIFFRACTION' . 1.5718 1.6347 2713 0.2325 100.00 0.2567 . . 147 . . 'X-RAY DIFFRACTION' . 1.6347 1.7091 2696 0.1871 100.00 0.2155 . . 141 . . 'X-RAY DIFFRACTION' . 1.7091 1.7992 2688 0.1698 99.00 0.2126 . . 140 . . 'X-RAY DIFFRACTION' . 1.7992 1.9119 2702 0.1613 98.00 0.1958 . . 149 . . 'X-RAY DIFFRACTION' . 1.9119 2.0595 2646 0.1522 97.00 0.1900 . . 142 . . 'X-RAY DIFFRACTION' . 2.0595 2.2666 2625 0.1563 97.00 0.1997 . . 169 . . 'X-RAY DIFFRACTION' . 2.2666 2.5944 2646 0.1582 96.00 0.1931 . . 145 . . 'X-RAY DIFFRACTION' . 2.5944 3.2680 2658 0.1530 95.00 0.1736 . . 144 . . 'X-RAY DIFFRACTION' . 3.2680 28.7323 2561 0.1678 87.00 0.1661 . . 104 . . # _struct.entry_id 4BOQ _struct.title 'Structure of OTUD2 OTU domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BOQ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 6 ? TYR A 10 ? GLY A 137 TYR A 141 5 ? 5 HELX_P HELX_P2 2 SER A 28 ? GLU A 39 ? SER A 159 GLU A 170 1 ? 12 HELX_P HELX_P3 3 CYS A 47 ? ASP A 62 ? CYS A 178 ASP A 193 1 ? 16 HELX_P HELX_P4 4 SER A 67 ? GLY A 72 ? SER A 198 GLY A 203 1 ? 6 HELX_P HELX_P5 5 THR A 74 ? LYS A 83 ? THR A 205 LYS A 214 1 ? 10 HELX_P HELX_P6 6 GLY A 90 ? GLN A 102 ? GLY A 221 GLN A 233 1 ? 13 HELX_P HELX_P7 7 ASP A 160 ? GLN A 178 ? ASP A 291 GLN A 309 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 17 ? ARG A 20 ? VAL A 148 ARG A 151 AA 2 TYR A 137 ? ASN A 143 ? TYR A 268 ASN A 274 AA 3 LYS A 126 ? TYR A 132 ? LYS A 257 TYR A 263 AA 4 PHE A 155 ? SER A 156 ? PHE A 286 SER A 287 AB 1 VAL A 17 ? ARG A 20 ? VAL A 148 ARG A 151 AB 2 TYR A 137 ? ASN A 143 ? TYR A 268 ASN A 274 AB 3 LYS A 126 ? TYR A 132 ? LYS A 257 TYR A 263 AB 4 GLU A 104 ? ASP A 109 ? GLU A 235 ASP A 240 AB 5 ARG A 114 ? PHE A 118 ? ARG A 245 PHE A 249 AC 1 PHE A 155 ? SER A 156 ? PHE A 286 SER A 287 AC 2 LYS A 126 ? TYR A 132 ? LYS A 257 TYR A 263 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 19 ? N THR A 150 O GLN A 141 ? O GLN A 272 AA 2 3 N LEU A 140 ? N LEU A 271 O LEU A 129 ? O LEU A 260 AA 3 4 N ARG A 127 ? N ARG A 258 O PHE A 155 ? O PHE A 286 AB 1 2 N THR A 19 ? N THR A 150 O GLN A 141 ? O GLN A 272 AB 2 3 N LEU A 140 ? N LEU A 271 O LEU A 129 ? O LEU A 260 AB 3 4 N VAL A 128 ? N VAL A 259 O GLU A 104 ? O GLU A 235 AB 4 5 N ASP A 109 ? N ASP A 240 O ARG A 114 ? O ARG A 245 AC 1 2 N PHE A 155 ? N PHE A 286 O ARG A 127 ? O ARG A 258 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1310 ? 7 'BINDING SITE FOR RESIDUE GOL A 1310' AC2 Software A GOL 1311 ? 7 'BINDING SITE FOR RESIDUE GOL A 1311' AC3 Software A GOL 1312 ? 8 'BINDING SITE FOR RESIDUE GOL A 1312' AC4 Software A GOL 1313 ? 7 'BINDING SITE FOR RESIDUE GOL A 1313' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 104 ? GLU A 235 . ? 1_555 ? 2 AC1 7 ARG A 117 ? ARG A 248 . ? 1_555 ? 3 AC1 7 GLY A 119 ? GLY A 250 . ? 1_555 ? 4 AC1 7 GLU A 120 ? GLU A 251 . ? 1_555 ? 5 AC1 7 GLY A 123 ? GLY A 254 . ? 1_555 ? 6 AC1 7 TYR A 124 ? TYR A 255 . ? 1_555 ? 7 AC1 7 SER A 157 ? SER A 288 . ? 1_555 ? 8 AC2 7 ARG A 142 ? ARG A 273 . ? 1_555 ? 9 AC2 7 LEU A 152 ? LEU A 283 . ? 1_555 ? 10 AC2 7 PHE A 155 ? PHE A 286 . ? 1_555 ? 11 AC2 7 SER A 156 ? SER A 287 . ? 1_555 ? 12 AC2 7 ASP A 159 ? ASP A 290 . ? 1_555 ? 13 AC2 7 HOH F . ? HOH A 2111 . ? 1_555 ? 14 AC2 7 HOH F . ? HOH A 2129 . ? 1_555 ? 15 AC3 8 PRO A 16 ? PRO A 147 . ? 1_555 ? 16 AC3 8 ALA A 46 ? ALA A 177 . ? 2_665 ? 17 AC3 8 ARG A 142 ? ARG A 273 . ? 1_555 ? 18 AC3 8 ILE A 161 ? ILE A 292 . ? 1_555 ? 19 AC3 8 HOH F . ? HOH A 2010 . ? 1_555 ? 20 AC3 8 HOH F . ? HOH A 2111 . ? 1_555 ? 21 AC3 8 HOH F . ? HOH A 2121 . ? 1_555 ? 22 AC3 8 HOH F . ? HOH A 2130 . ? 1_555 ? 23 AC4 7 LYS A 4 ? LYS A 135 . ? 1_555 ? 24 AC4 7 TRP A 81 ? TRP A 212 . ? 5_675 ? 25 AC4 7 GLY A 90 ? GLY A 221 . ? 5_675 ? 26 AC4 7 ALA A 91 ? ALA A 222 . ? 5_675 ? 27 AC4 7 ILE A 92 ? ILE A 223 . ? 5_675 ? 28 AC4 7 GLU A 93 ? GLU A 224 . ? 5_675 ? 29 AC4 7 HOH F . ? HOH A 2062 . ? 5_675 ? # _database_PDB_matrix.entry_id 4BOQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BOQ _atom_sites.fract_transf_matrix[1][1] 0.016483 _atom_sites.fract_transf_matrix[1][2] 0.009516 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019032 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011604 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 132 ? ? ? A . n A 1 2 PHE 2 133 ? ? ? A . n A 1 3 THR 3 134 ? ? ? A . n A 1 4 LYS 4 135 135 LYS LYS A . n A 1 5 ARG 5 136 136 ARG ARG A . n A 1 6 GLY 6 137 137 GLY GLY A . n A 1 7 ALA 7 138 138 ALA ALA A . n A 1 8 SER 8 139 139 SER SER A . n A 1 9 SER 9 140 140 SER SER A . n A 1 10 TYR 10 141 141 TYR TYR A . n A 1 11 VAL 11 142 142 VAL VAL A . n A 1 12 ARG 12 143 143 ARG ARG A . n A 1 13 GLU 13 144 144 GLU GLU A . n A 1 14 THR 14 145 145 THR THR A . n A 1 15 LEU 15 146 146 LEU LEU A . n A 1 16 PRO 16 147 147 PRO PRO A . n A 1 17 VAL 17 148 148 VAL VAL A . n A 1 18 LEU 18 149 149 LEU LEU A . n A 1 19 THR 19 150 150 THR THR A . n A 1 20 ARG 20 151 151 ARG ARG A . n A 1 21 THR 21 152 152 THR THR A . n A 1 22 VAL 22 153 153 VAL VAL A . n A 1 23 VAL 23 154 154 VAL VAL A . n A 1 24 PRO 24 155 155 PRO PRO A . n A 1 25 ALA 25 156 156 ALA ALA A . n A 1 26 ASP 26 157 157 ASP ASP A . n A 1 27 ASN 27 158 158 ASN ASN A . n A 1 28 SER 28 159 159 SER SER A . n A 1 29 CYS 29 160 160 CYS CYS A . n A 1 30 LEU 30 161 161 LEU LEU A . n A 1 31 PHE 31 162 162 PHE PHE A . n A 1 32 THR 32 163 163 THR THR A . n A 1 33 SER 33 164 164 SER SER A . n A 1 34 VAL 34 165 165 VAL VAL A . n A 1 35 TYR 35 166 166 TYR TYR A . n A 1 36 TYR 36 167 167 TYR TYR A . n A 1 37 VAL 37 168 168 VAL VAL A . n A 1 38 VAL 38 169 169 VAL VAL A . n A 1 39 GLU 39 170 170 GLU GLU A . n A 1 40 GLY 40 171 171 GLY GLY A . n A 1 41 GLY 41 172 172 GLY GLY A . n A 1 42 VAL 42 173 173 VAL VAL A . n A 1 43 LEU 43 174 174 LEU LEU A . n A 1 44 ASN 44 175 175 ASN ASN A . n A 1 45 PRO 45 176 176 PRO PRO A . n A 1 46 ALA 46 177 177 ALA ALA A . n A 1 47 CYS 47 178 178 CYS CYS A . n A 1 48 ALA 48 179 179 ALA ALA A . n A 1 49 PRO 49 180 180 PRO PRO A . n A 1 50 GLU 50 181 181 GLU GLU A . n A 1 51 MET 51 182 182 MET MET A . n A 1 52 ARG 52 183 183 ARG ARG A . n A 1 53 ARG 53 184 184 ARG ARG A . n A 1 54 LEU 54 185 185 LEU LEU A . n A 1 55 ILE 55 186 186 ILE ILE A . n A 1 56 ALA 56 187 187 ALA ALA A . n A 1 57 GLN 57 188 188 GLN GLN A . n A 1 58 ILE 58 189 189 ILE ILE A . n A 1 59 VAL 59 190 190 VAL VAL A . n A 1 60 ALA 60 191 191 ALA ALA A . n A 1 61 SER 61 192 192 SER SER A . n A 1 62 ASP 62 193 193 ASP ASP A . n A 1 63 PRO 63 194 194 PRO PRO A . n A 1 64 ASP 64 195 195 ASP ASP A . n A 1 65 PHE 65 196 196 PHE PHE A . n A 1 66 TYR 66 197 197 TYR TYR A . n A 1 67 SER 67 198 198 SER SER A . n A 1 68 GLU 68 199 199 GLU GLU A . n A 1 69 ALA 69 200 200 ALA ALA A . n A 1 70 ILE 70 201 201 ILE ILE A . n A 1 71 LEU 71 202 202 LEU LEU A . n A 1 72 GLY 72 203 203 GLY GLY A . n A 1 73 LYS 73 204 204 LYS LYS A . n A 1 74 THR 74 205 205 THR THR A . n A 1 75 ASN 75 206 206 ASN ASN A . n A 1 76 GLN 76 207 207 GLN GLN A . n A 1 77 GLU 77 208 208 GLU GLU A . n A 1 78 TYR 78 209 209 TYR TYR A . n A 1 79 CYS 79 210 210 CYS CYS A . n A 1 80 ASP 80 211 211 ASP ASP A . n A 1 81 TRP 81 212 212 TRP TRP A . n A 1 82 ILE 82 213 213 ILE ILE A . n A 1 83 LYS 83 214 214 LYS LYS A . n A 1 84 ARG 84 215 215 ARG ARG A . n A 1 85 ASP 85 216 216 ASP ASP A . n A 1 86 ASP 86 217 217 ASP ASP A . n A 1 87 THR 87 218 218 THR THR A . n A 1 88 TRP 88 219 219 TRP TRP A . n A 1 89 GLY 89 220 220 GLY GLY A . n A 1 90 GLY 90 221 221 GLY GLY A . n A 1 91 ALA 91 222 222 ALA ALA A . n A 1 92 ILE 92 223 223 ILE ILE A . n A 1 93 GLU 93 224 224 GLU GLU A . n A 1 94 ILE 94 225 225 ILE ILE A . n A 1 95 SER 95 226 226 SER SER A . n A 1 96 ILE 96 227 227 ILE ILE A . n A 1 97 LEU 97 228 228 LEU LEU A . n A 1 98 SER 98 229 229 SER SER A . n A 1 99 LYS 99 230 230 LYS LYS A . n A 1 100 PHE 100 231 231 PHE PHE A . n A 1 101 TYR 101 232 232 TYR TYR A . n A 1 102 GLN 102 233 233 GLN GLN A . n A 1 103 CYS 103 234 234 CYS CYS A . n A 1 104 GLU 104 235 235 GLU GLU A . n A 1 105 ILE 105 236 236 ILE ILE A . n A 1 106 CYS 106 237 237 CYS CYS A . n A 1 107 VAL 107 238 238 VAL VAL A . n A 1 108 VAL 108 239 239 VAL VAL A . n A 1 109 ASP 109 240 240 ASP ASP A . n A 1 110 THR 110 241 241 THR THR A . n A 1 111 GLN 111 242 242 GLN GLN A . n A 1 112 THR 112 243 243 THR THR A . n A 1 113 VAL 113 244 244 VAL VAL A . n A 1 114 ARG 114 245 245 ARG ARG A . n A 1 115 ILE 115 246 246 ILE ILE A . n A 1 116 ASP 116 247 247 ASP ASP A . n A 1 117 ARG 117 248 248 ARG ARG A . n A 1 118 PHE 118 249 249 PHE PHE A . n A 1 119 GLY 119 250 250 GLY GLY A . n A 1 120 GLU 120 251 251 GLU GLU A . n A 1 121 ASP 121 252 252 ASP ASP A . n A 1 122 ALA 122 253 253 ALA ALA A . n A 1 123 GLY 123 254 254 GLY GLY A . n A 1 124 TYR 124 255 255 TYR TYR A . n A 1 125 THR 125 256 256 THR THR A . n A 1 126 LYS 126 257 257 LYS LYS A . n A 1 127 ARG 127 258 258 ARG ARG A . n A 1 128 VAL 128 259 259 VAL VAL A . n A 1 129 LEU 129 260 260 LEU LEU A . n A 1 130 LEU 130 261 261 LEU LEU A . n A 1 131 ILE 131 262 262 ILE ILE A . n A 1 132 TYR 132 263 263 TYR TYR A . n A 1 133 ASP 133 264 264 ASP ASP A . n A 1 134 GLY 134 265 265 GLY GLY A . n A 1 135 ILE 135 266 266 ILE ILE A . n A 1 136 HIS 136 267 267 HIS HIS A . n A 1 137 TYR 137 268 268 TYR TYR A . n A 1 138 ASP 138 269 269 ASP ASP A . n A 1 139 PRO 139 270 270 PRO PRO A . n A 1 140 LEU 140 271 271 LEU LEU A . n A 1 141 GLN 141 272 272 GLN GLN A . n A 1 142 ARG 142 273 273 ARG ARG A . n A 1 143 ASN 143 274 274 ASN ASN A . n A 1 144 PHE 144 275 275 PHE PHE A . n A 1 145 PRO 145 276 276 PRO PRO A . n A 1 146 ASP 146 277 277 ASP ASP A . n A 1 147 PRO 147 278 278 PRO PRO A . n A 1 148 ASP 148 279 279 ASP ASP A . n A 1 149 THR 149 280 280 THR THR A . n A 1 150 PRO 150 281 281 PRO PRO A . n A 1 151 PRO 151 282 282 PRO PRO A . n A 1 152 LEU 152 283 283 LEU LEU A . n A 1 153 THR 153 284 284 THR THR A . n A 1 154 ILE 154 285 285 ILE ILE A . n A 1 155 PHE 155 286 286 PHE PHE A . n A 1 156 SER 156 287 287 SER SER A . n A 1 157 SER 157 288 288 SER SER A . n A 1 158 ASN 158 289 289 ASN ASN A . n A 1 159 ASP 159 290 290 ASP ASP A . n A 1 160 ASP 160 291 291 ASP ASP A . n A 1 161 ILE 161 292 292 ILE ILE A . n A 1 162 VAL 162 293 293 VAL VAL A . n A 1 163 LEU 163 294 294 LEU LEU A . n A 1 164 VAL 164 295 295 VAL VAL A . n A 1 165 GLN 165 296 296 GLN GLN A . n A 1 166 ALA 166 297 297 ALA ALA A . n A 1 167 LEU 167 298 298 LEU LEU A . n A 1 168 GLU 168 299 299 GLU GLU A . n A 1 169 LEU 169 300 300 LEU LEU A . n A 1 170 ALA 170 301 301 ALA ALA A . n A 1 171 ASP 171 302 302 ASP ASP A . n A 1 172 GLU 172 303 303 GLU GLU A . n A 1 173 ALA 173 304 304 ALA ALA A . n A 1 174 ARG 174 305 305 ARG ARG A . n A 1 175 ARG 175 306 306 ARG ARG A . n A 1 176 ARG 176 307 307 ARG ARG A . n A 1 177 ARG 177 308 308 ARG ARG A . n A 1 178 GLN 178 309 309 GLN GLN A . n A 1 179 PHE 179 310 ? ? ? A . n A 1 180 THR 180 311 ? ? ? A . n A 1 181 ASP 181 312 ? ? ? A . n A 1 182 VAL 182 313 ? ? ? A . n A 1 183 ASN 183 314 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1310 1310 GOL GOL A . C 2 GOL 1 1311 1311 GOL GOL A . D 2 GOL 1 1312 1312 GOL GOL A . E 2 GOL 1 1313 1313 GOL GOL A . F 3 HOH 1 2001 2001 HOH HOH A . F 3 HOH 2 2002 2002 HOH HOH A . F 3 HOH 3 2003 2003 HOH HOH A . F 3 HOH 4 2004 2004 HOH HOH A . F 3 HOH 5 2005 2005 HOH HOH A . F 3 HOH 6 2006 2006 HOH HOH A . F 3 HOH 7 2007 2007 HOH HOH A . F 3 HOH 8 2008 2008 HOH HOH A . F 3 HOH 9 2009 2009 HOH HOH A . F 3 HOH 10 2010 2010 HOH HOH A . F 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 12 2012 2012 HOH HOH A . F 3 HOH 13 2013 2013 HOH HOH A . F 3 HOH 14 2014 2014 HOH HOH A . F 3 HOH 15 2015 2015 HOH HOH A . F 3 HOH 16 2016 2016 HOH HOH A . F 3 HOH 17 2017 2017 HOH HOH A . F 3 HOH 18 2018 2018 HOH HOH A . F 3 HOH 19 2019 2019 HOH HOH A . F 3 HOH 20 2020 2020 HOH HOH A . F 3 HOH 21 2021 2021 HOH HOH A . F 3 HOH 22 2022 2022 HOH HOH A . F 3 HOH 23 2023 2023 HOH HOH A . F 3 HOH 24 2024 2024 HOH HOH A . F 3 HOH 25 2025 2025 HOH HOH A . F 3 HOH 26 2026 2026 HOH HOH A . F 3 HOH 27 2027 2027 HOH HOH A . F 3 HOH 28 2028 2028 HOH HOH A . F 3 HOH 29 2029 2029 HOH HOH A . F 3 HOH 30 2030 2030 HOH HOH A . F 3 HOH 31 2031 2031 HOH HOH A . F 3 HOH 32 2032 2032 HOH HOH A . F 3 HOH 33 2033 2033 HOH HOH A . F 3 HOH 34 2034 2034 HOH HOH A . F 3 HOH 35 2035 2035 HOH HOH A . F 3 HOH 36 2036 2036 HOH HOH A . F 3 HOH 37 2037 2037 HOH HOH A . F 3 HOH 38 2038 2038 HOH HOH A . F 3 HOH 39 2039 2039 HOH HOH A . F 3 HOH 40 2040 2040 HOH HOH A . F 3 HOH 41 2041 2041 HOH HOH A . F 3 HOH 42 2042 2042 HOH HOH A . F 3 HOH 43 2043 2043 HOH HOH A . F 3 HOH 44 2044 2044 HOH HOH A . F 3 HOH 45 2045 2045 HOH HOH A . F 3 HOH 46 2046 2046 HOH HOH A . F 3 HOH 47 2047 2047 HOH HOH A . F 3 HOH 48 2048 2048 HOH HOH A . F 3 HOH 49 2049 2049 HOH HOH A . F 3 HOH 50 2050 2050 HOH HOH A . F 3 HOH 51 2051 2051 HOH HOH A . F 3 HOH 52 2052 2052 HOH HOH A . F 3 HOH 53 2053 2053 HOH HOH A . F 3 HOH 54 2054 2054 HOH HOH A . F 3 HOH 55 2055 2055 HOH HOH A . F 3 HOH 56 2056 2056 HOH HOH A . F 3 HOH 57 2057 2057 HOH HOH A . F 3 HOH 58 2058 2058 HOH HOH A . F 3 HOH 59 2059 2059 HOH HOH A . F 3 HOH 60 2060 2060 HOH HOH A . F 3 HOH 61 2061 2061 HOH HOH A . F 3 HOH 62 2062 2062 HOH HOH A . F 3 HOH 63 2063 2063 HOH HOH A . F 3 HOH 64 2064 2064 HOH HOH A . F 3 HOH 65 2065 2065 HOH HOH A . F 3 HOH 66 2066 2066 HOH HOH A . F 3 HOH 67 2067 2067 HOH HOH A . F 3 HOH 68 2068 2068 HOH HOH A . F 3 HOH 69 2069 2069 HOH HOH A . F 3 HOH 70 2070 2070 HOH HOH A . F 3 HOH 71 2071 2071 HOH HOH A . F 3 HOH 72 2072 2072 HOH HOH A . F 3 HOH 73 2073 2073 HOH HOH A . F 3 HOH 74 2074 2074 HOH HOH A . F 3 HOH 75 2075 2075 HOH HOH A . F 3 HOH 76 2076 2076 HOH HOH A . F 3 HOH 77 2077 2077 HOH HOH A . F 3 HOH 78 2078 2078 HOH HOH A . F 3 HOH 79 2079 2079 HOH HOH A . F 3 HOH 80 2080 2080 HOH HOH A . F 3 HOH 81 2081 2081 HOH HOH A . F 3 HOH 82 2082 2082 HOH HOH A . F 3 HOH 83 2083 2083 HOH HOH A . F 3 HOH 84 2084 2084 HOH HOH A . F 3 HOH 85 2085 2085 HOH HOH A . F 3 HOH 86 2086 2086 HOH HOH A . F 3 HOH 87 2087 2087 HOH HOH A . F 3 HOH 88 2088 2088 HOH HOH A . F 3 HOH 89 2089 2089 HOH HOH A . F 3 HOH 90 2090 2090 HOH HOH A . F 3 HOH 91 2091 2091 HOH HOH A . F 3 HOH 92 2092 2092 HOH HOH A . F 3 HOH 93 2093 2093 HOH HOH A . F 3 HOH 94 2094 2094 HOH HOH A . F 3 HOH 95 2095 2095 HOH HOH A . F 3 HOH 96 2096 2096 HOH HOH A . F 3 HOH 97 2097 2097 HOH HOH A . F 3 HOH 98 2098 2098 HOH HOH A . F 3 HOH 99 2099 2099 HOH HOH A . F 3 HOH 100 2100 2100 HOH HOH A . F 3 HOH 101 2101 2101 HOH HOH A . F 3 HOH 102 2102 2102 HOH HOH A . F 3 HOH 103 2103 2103 HOH HOH A . F 3 HOH 104 2104 2104 HOH HOH A . F 3 HOH 105 2105 2105 HOH HOH A . F 3 HOH 106 2106 2106 HOH HOH A . F 3 HOH 107 2107 2107 HOH HOH A . F 3 HOH 108 2108 2108 HOH HOH A . F 3 HOH 109 2109 2109 HOH HOH A . F 3 HOH 110 2110 2110 HOH HOH A . F 3 HOH 111 2111 2111 HOH HOH A . F 3 HOH 112 2112 2112 HOH HOH A . F 3 HOH 113 2113 2113 HOH HOH A . F 3 HOH 114 2114 2114 HOH HOH A . F 3 HOH 115 2115 2115 HOH HOH A . F 3 HOH 116 2116 2116 HOH HOH A . F 3 HOH 117 2117 2117 HOH HOH A . F 3 HOH 118 2118 2118 HOH HOH A . F 3 HOH 119 2119 2119 HOH HOH A . F 3 HOH 120 2120 2120 HOH HOH A . F 3 HOH 121 2121 2121 HOH HOH A . F 3 HOH 122 2122 2122 HOH HOH A . F 3 HOH 123 2123 2123 HOH HOH A . F 3 HOH 124 2124 2124 HOH HOH A . F 3 HOH 125 2125 2125 HOH HOH A . F 3 HOH 126 2126 2126 HOH HOH A . F 3 HOH 127 2127 2127 HOH HOH A . F 3 HOH 128 2128 2128 HOH HOH A . F 3 HOH 129 2129 2129 HOH HOH A . F 3 HOH 130 2130 2130 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5510 ? 1 MORE -20.6 ? 1 'SSA (A^2)' 15760 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 105.0835224952 0.0000000000 0.0000000000 -1.0000000000 57.4533333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2047 ? F HOH . 2 1 A HOH 2060 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-17 2 'Structure model' 1 1 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_initial_refinement_model 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.8302 44.4455 23.2121 0.0956 0.0755 0.1149 0.0056 -0.0078 0.0176 0.5235 0.7218 3.7130 0.2346 -0.8411 -0.0620 0.0428 -0.0532 -0.0996 0.0531 -0.1212 -0.0704 0.1606 0.0898 0.1124 'X-RAY DIFFRACTION' 2 ? refined 4.7227 45.5018 -0.5157 0.2560 0.1517 0.1490 0.0336 -0.0089 -0.0326 0.6714 3.1287 3.7510 -0.7129 -0.4594 -2.2324 0.0955 0.1843 -0.0743 -0.5684 -0.2476 -0.0049 0.3541 -0.1041 0.0772 'X-RAY DIFFRACTION' 3 ? refined 0.9786 53.4543 8.1367 0.1288 0.1048 0.1225 0.0499 -0.0085 -0.0034 0.7802 1.8299 2.7324 -0.4332 -0.3183 -0.1403 0.1100 0.1267 0.0665 -0.2190 -0.0691 0.0342 -0.2230 -0.2205 -0.0297 'X-RAY DIFFRACTION' 4 ? refined 5.2708 56.3464 25.8232 0.2284 0.1620 0.1700 -0.0230 -0.0130 -0.0071 3.6157 3.2700 2.5837 3.0476 -2.8758 -2.1367 0.1151 -0.4186 -0.0845 0.2516 -0.1918 -0.3125 -0.3211 0.4243 0.0555 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 135:169)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 170:191)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 192:291)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 292:309)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 266 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -131.26 _pdbx_validate_torsion.psi -51.03 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2088 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.22 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 135 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 135 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 135 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 135 ? NZ ? A LYS 4 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 132 ? A ALA 1 2 1 Y 1 A PHE 133 ? A PHE 2 3 1 Y 1 A THR 134 ? A THR 3 4 1 Y 1 A PHE 310 ? A PHE 179 5 1 Y 1 A THR 311 ? A THR 180 6 1 Y 1 A ASP 312 ? A ASP 181 7 1 Y 1 A VAL 313 ? A VAL 182 8 1 Y 1 A ASN 314 ? A ASN 183 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BY4 _pdbx_initial_refinement_model.details 'PDB ENTRY 3BY4' #