HEADER TRANSFERASE 31-MAY-13 4BQN TITLE STRUCTURAL INSIGHTS INTO WCBI, A NOVEL POLYSACCHARIDE TITLE 2 BIOSYNTHESIS ENZYME. NATIVE PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSULAR POLYSACCHARIDE BIOSYNTHESIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: WCBI; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 STRAIN: K96243; SOURCE 5 ATCC: 23343; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE, ACETYLTRANSFERASE, MELIOIDOSIS. EXPDTA X-RAY DIFFRACTION AUTHOR M.VIVOLI,E.AYRES,E.BEAUMONT,M.N.ISUPOV,N.J.HARMER REVDAT 3 13-AUG-14 4BQN 1 JRNL REVDAT 2 26-FEB-14 4BQN 1 JRNL REVDAT 1 06-NOV-13 4BQN 0 JRNL AUTH M.VIVOLI,E.AYRES,E.BEAUMONT,M.N.ISUPOV,N.J.HARMER JRNL TITL STRUCTURAL INSIGHTS INTO WCBI, A NOVEL JRNL TITL 2 POLYSACCHARIDE-BIOSYNTHESIS ENZYME. JRNL REF IUCRJ V. 1 28 2014 JRNL REFN ISSN 2052-2525 JRNL PMID 25075317 JRNL DOI 10.1107/S205225251302695X REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 92.25 REMARK 3 NUMBER OF REFLECTIONS : 132676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.11846 REMARK 3 R VALUE (WORKING SET) : 0.11650 REMARK 3 FREE R VALUE : 0.15502 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 7032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.380 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.416 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.155 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5825 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 1041 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.683 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25 REMARK 3 B22 (A**2) : -0.69 REMARK 3 B33 (A**2) : -0.21 REMARK 3 B12 (A**2) : -0.03 REMARK 3 B13 (A**2) : 0.09 REMARK 3 B23 (A**2) : 0.15 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6237 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8631 ; 1.296 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 854 ; 5.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 331 ;31.143 ;23.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;13.479 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;17.001 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 892 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4978 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2795 ; 2.418 ; 4.391 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3565 ; 3.008 ; 7.446 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3442 ; 4.428 ; 5.389 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6237 ; 1.406 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 47 ;40.556 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6973 ;19.073 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-13. REMARK 100 THE PDBE ID CODE IS EBI-57085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 397472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.38 REMARK 200 RESOLUTION RANGE LOW (A) : 24.15 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 2.8 REMARK 200 R MERGE (I) : 0.02 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.5 REMARK 200 R MERGE FOR SHELL (I) : 0.18 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX,ARP,WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 75 MM LICL, REMARK 280 75 MM MGCL2, 0.05 M HEPES PH 7.0-8.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 MET B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 312 CA C O CB OG REMARK 470 SER B 312 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ B LYS A 7 O HOH A 2003 1.98 REMARK 500 CD A GLU A 47 O HOH A 2109 2.03 REMARK 500 OE1A GLU A 47 O HOH A 2109 0.84 REMARK 500 OE1B GLU A 47 O HOH A 2123 1.94 REMARK 500 NH1A ARG A 51 O HOH A 2142 2.12 REMARK 500 CD1B LEU A 53 O HOH A 2129 1.23 REMARK 500 OD2A ASP A 134 OE1A GLU A 136 1.41 REMARK 500 OD1B ASP A 134 O HOH A 2331 1.58 REMARK 500 OE2B GLU A 136 O HOH A 2335 2.10 REMARK 500 OE2B GLU A 136 O HOH A 2337 1.85 REMARK 500 NH1A ARG A 140 O HOH A 2338 1.98 REMARK 500 CZ B ARG A 140 O HOH A 2345 1.97 REMARK 500 NH1B ARG A 140 O HOH A 2345 1.39 REMARK 500 NH2B ARG A 140 O HOH A 2345 2.11 REMARK 500 OE1A GLU A 143 O HOH A 2344 1.96 REMARK 500 OE2B GLU A 144 O1 PEG A 1313 1.66 REMARK 500 NH1A ARG A 150 O HOH A 2349 1.21 REMARK 500 NH1B ARG A 150 O HOH A 2350 1.38 REMARK 500 OD1B ASP A 162 O HOH A 2379 1.81 REMARK 500 OD2B ASP A 162 O HOH A 2383 2.05 REMARK 500 CG B GLU A 168 O HOH A 2267 1.63 REMARK 500 CD B GLU A 168 O HOH A 2387 1.84 REMARK 500 OE2B GLU A 168 O HOH A 2387 1.12 REMARK 500 NE2B GLN A 177 O HOH A 2406 1.59 REMARK 500 NE2 HIS A 201 O HOH A 2030 2.02 REMARK 500 OG1B THR A 221 O HOH A 2461 1.38 REMARK 500 CZ B ARG A 246 O B ASN A 255 1.63 REMARK 500 NH2B ARG A 246 CA B ASN A 255 2.10 REMARK 500 NH2B ARG A 246 C B ASN A 255 1.07 REMARK 500 NH2B ARG A 246 O B ASN A 255 0.59 REMARK 500 NH2B ARG A 246 N B ARG A 256 2.16 REMARK 500 N A GLU A 253 O HOH A 2493 1.67 REMARK 500 CD A GLU A 253 O HOH A 2493 1.80 REMARK 500 OE1A GLU A 253 O HOH A 2493 0.91 REMARK 500 NH2B ARG A 256 O HOH A 2339 1.05 REMARK 500 CE1B TYR A 269 O HOH A 2519 2.17 REMARK 500 OH B TYR A 269 O HOH A 2519 2.07 REMARK 500 NE B ARG A 282 O HOH A 2540 2.12 REMARK 500 CZ B ARG A 282 O HOH A 2540 1.31 REMARK 500 NH2B ARG A 282 O HOH A 2540 0.40 REMARK 500 NH1B ARG A 307 O HOH A 2577 1.18 REMARK 500 OE2B GLU A 311 O HOH A 2327 1.70 REMARK 500 N A SER A 312 O HOH A 2582 1.97 REMARK 500 NZ B LYS B 6 C1 PGE B 1312 1.47 REMARK 500 NZ B LYS B 6 C2 PGE B 1312 1.58 REMARK 500 OE1B GLU B 37 O HOH A 2547 2.17 REMARK 500 CD B GLU B 46 O HOH B 2067 2.01 REMARK 500 OE1B GLU B 46 O HOH B 2067 0.95 REMARK 500 REMARK 500 THIS ENTRY HAS 105 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1B GLU A 143 NH2A ARG B 150 2565 1.34 REMARK 500 OE1B GLN A 192 O4 PGE B 1312 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -169.75 -74.85 REMARK 500 THR A 56 -62.80 -94.31 REMARK 500 ASN A 108 -159.73 -148.50 REMARK 500 ILE A 244 -55.45 72.68 REMARK 500 GLU A 253 -80.08 -111.47 REMARK 500 ARG A 256 84.86 47.99 REMARK 500 MET A 257 123.11 71.56 REMARK 500 SER B 13 -168.82 -75.46 REMARK 500 THR B 56 -63.07 -94.87 REMARK 500 ILE B 244 -55.74 70.55 REMARK 500 ASN B 255 154.67 178.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQO RELATED DB: PDB REMARK 900 STRUCTURAL INSIGHTS INTO WCBI, A NOVEL POLYSACCHARIDE REMARK 900 BIOSYNTHESIS ENZYME. NATIVE PROTEIN WITHOUT DISULFIDE BOND REMARK 900 BETWEEN COA AND CYS14. DBREF 4BQN A 1 312 UNP Q63R74 Q63R74_BURPS 1 312 DBREF 4BQN B 1 312 UNP Q63R74 Q63R74_BURPS 1 312 SEQADV 4BQN SER A 1 UNP Q63R74 MET 1 ENGINEERED MUTATION SEQADV 4BQN SER B 1 UNP Q63R74 MET 1 ENGINEERED MUTATION SEQRES 1 A 312 SER MET ALA GLN ARG LYS LYS TYR SER VAL TYR GLY SER SEQRES 2 A 312 CYS GLN ALA PRO ALA LEU ALA LYS MET LEU ASN SER CYS SEQRES 3 A 312 PRO THR PHE ALA ARG ASP TRP GLU LEU VAL GLU MET GLU SEQRES 4 A 312 PRO CYS PHE VAL ALA SER GLU GLU GLN ILE ASP ARG HIS SEQRES 5 A 312 LEU ALA GLU THR ILE PRO LYS LEU ASP LEU PHE LEU TYR SEQRES 6 A 312 GLN PRO VAL SER GLU GLY TYR ARG GLY GLU LYS TYR SER SEQRES 7 A 312 SER VAL PHE LEU ARG ASN SER MET PRO PRO GLY GLY ASN SEQRES 8 A 312 ALA LEU SER VAL GLN TYR MET HIS TRP GLU GLY TYR HIS SEQRES 9 A 312 PRO THR VAL ASN SER PRO TYR GLY LEU PRO PRO HIS PRO SEQRES 10 A 312 GLU GLY TYR VAL ASP ALA LEU ILE ALA GLY ALA VAL VAL SEQRES 11 A 312 MET ASP VAL ASP LYS GLU THR TYR LEU ARG HIS LEU GLU SEQRES 12 A 312 GLU ILE GLY ALA SER LEU ARG ILE ASP ILE ASP GLU ILE SEQRES 13 A 312 GLU SER TRP CYS VAL ASP GLU LEU LYS THR ARG GLU VAL SEQRES 14 A 312 GLY GLU ASN ASP GLY GLY LYS GLN ILE ASP ILE SER VAL SEQRES 15 A 312 THR ASP PHE ILE LEU ALA ASN CYS ARG GLN LYS ARG LEU SEQRES 16 A 312 PHE TYR THR MET ASN HIS PRO THR ALA ALA LEU MET ARG SEQRES 17 A 312 GLU ILE ALA ALA ARG CYS MET LEU ALA LEU GLY TYR THR SEQRES 18 A 312 TYR SER ASP ILE SER PHE ASP GLN ASN LEU ASP PRO LEU SEQRES 19 A 312 ASP VAL THR LYS MET SER LEU TYR PRO ILE TYR ARG ASP SEQRES 20 A 312 CYS PHE ASP PHE SER GLU LEU ASN ARG MET ASN GLU TYR SEQRES 21 A 312 GLN VAL LEU TYR LYS LYS LYS ALA TYR GLU PRO TYR LEU SEQRES 22 A 312 LEU GLU GLN PHE GLU TRP PHE GLU ARG SER PRO LYS ALA SEQRES 23 A 312 ASP VAL SER ALA PHE PHE ASP ARG VAL ALA ALA ASN ARG SEQRES 24 A 312 ARG TRP VAL ARG THR ALA LEU ARG ARG ALA PHE GLU SER SEQRES 1 B 312 SER MET ALA GLN ARG LYS LYS TYR SER VAL TYR GLY SER SEQRES 2 B 312 CYS GLN ALA PRO ALA LEU ALA LYS MET LEU ASN SER CYS SEQRES 3 B 312 PRO THR PHE ALA ARG ASP TRP GLU LEU VAL GLU MET GLU SEQRES 4 B 312 PRO CYS PHE VAL ALA SER GLU GLU GLN ILE ASP ARG HIS SEQRES 5 B 312 LEU ALA GLU THR ILE PRO LYS LEU ASP LEU PHE LEU TYR SEQRES 6 B 312 GLN PRO VAL SER GLU GLY TYR ARG GLY GLU LYS TYR SER SEQRES 7 B 312 SER VAL PHE LEU ARG ASN SER MET PRO PRO GLY GLY ASN SEQRES 8 B 312 ALA LEU SER VAL GLN TYR MET HIS TRP GLU GLY TYR HIS SEQRES 9 B 312 PRO THR VAL ASN SER PRO TYR GLY LEU PRO PRO HIS PRO SEQRES 10 B 312 GLU GLY TYR VAL ASP ALA LEU ILE ALA GLY ALA VAL VAL SEQRES 11 B 312 MET ASP VAL ASP LYS GLU THR TYR LEU ARG HIS LEU GLU SEQRES 12 B 312 GLU ILE GLY ALA SER LEU ARG ILE ASP ILE ASP GLU ILE SEQRES 13 B 312 GLU SER TRP CYS VAL ASP GLU LEU LYS THR ARG GLU VAL SEQRES 14 B 312 GLY GLU ASN ASP GLY GLY LYS GLN ILE ASP ILE SER VAL SEQRES 15 B 312 THR ASP PHE ILE LEU ALA ASN CYS ARG GLN LYS ARG LEU SEQRES 16 B 312 PHE TYR THR MET ASN HIS PRO THR ALA ALA LEU MET ARG SEQRES 17 B 312 GLU ILE ALA ALA ARG CYS MET LEU ALA LEU GLY TYR THR SEQRES 18 B 312 TYR SER ASP ILE SER PHE ASP GLN ASN LEU ASP PRO LEU SEQRES 19 B 312 ASP VAL THR LYS MET SER LEU TYR PRO ILE TYR ARG ASP SEQRES 20 B 312 CYS PHE ASP PHE SER GLU LEU ASN ARG MET ASN GLU TYR SEQRES 21 B 312 GLN VAL LEU TYR LYS LYS LYS ALA TYR GLU PRO TYR LEU SEQRES 22 B 312 LEU GLU GLN PHE GLU TRP PHE GLU ARG SER PRO LYS ALA SEQRES 23 B 312 ASP VAL SER ALA PHE PHE ASP ARG VAL ALA ALA ASN ARG SEQRES 24 B 312 ARG TRP VAL ARG THR ALA LEU ARG ARG ALA PHE GLU SER HET COA A 320 52 HET PEG A1312 14 HET PEG A1313 7 HET COA B 320 52 HET PGE B1312 10 HET PEG B1313 7 HET PEG B1314 7 HET CL A1314 1 HET CL B1315 1 HET CL A1315 1 HET CL A1316 1 HET CL A1317 1 HETNAM COA COENZYME A HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 CL 5(CL 1-) FORMUL 5 PGE C6 H14 O4 FORMUL 6 PEG 4(C4 H10 O3) FORMUL 7 HOH *1041(H2 O) HELIX 1 1 CYS A 14 SER A 25 1 12 HELIX 2 2 CYS A 26 ASP A 32 1 7 HELIX 3 3 SER A 45 THR A 56 1 12 HELIX 4 4 ILE A 57 LEU A 60 5 4 HELIX 5 5 GLY A 74 TYR A 77 5 4 HELIX 6 6 SER A 78 ASN A 84 1 7 HELIX 7 7 ALA A 123 MET A 131 1 9 HELIX 8 8 ASP A 134 HIS A 141 1 8 HELIX 9 9 HIS A 141 ASP A 152 1 12 HELIX 10 10 ASP A 152 GLU A 168 1 17 HELIX 11 11 VAL A 169 GLY A 174 5 6 HELIX 12 12 VAL A 182 CYS A 190 1 9 HELIX 13 13 THR A 203 LEU A 218 1 16 HELIX 14 14 THR A 221 ILE A 225 5 5 HELIX 15 15 ILE A 244 PHE A 249 5 6 HELIX 16 16 ALA A 268 ARG A 282 1 15 HELIX 17 17 PRO A 284 ALA A 297 1 14 HELIX 18 18 ARG A 299 GLU A 311 1 13 HELIX 19 19 CYS B 14 SER B 25 1 12 HELIX 20 20 CYS B 26 ASP B 32 1 7 HELIX 21 21 SER B 45 THR B 56 1 12 HELIX 22 22 ILE B 57 LEU B 60 5 4 HELIX 23 23 GLY B 74 TYR B 77 5 4 HELIX 24 24 SER B 78 ASN B 84 1 7 HELIX 25 25 ALA B 123 MET B 131 1 9 HELIX 26 26 ASP B 134 HIS B 141 1 8 HELIX 27 27 HIS B 141 ASP B 152 1 12 HELIX 28 28 ASP B 152 VAL B 169 1 18 HELIX 29 29 GLY B 170 GLY B 174 5 5 HELIX 30 30 VAL B 182 CYS B 190 1 9 HELIX 31 31 THR B 203 LEU B 218 1 16 HELIX 32 32 THR B 221 ILE B 225 5 5 HELIX 33 33 ILE B 244 PHE B 249 5 6 HELIX 34 34 ALA B 268 SER B 283 1 16 HELIX 35 35 PRO B 284 ALA B 297 1 14 HELIX 36 36 ARG B 299 GLU B 311 1 13 SHEET 1 AA 4 TRP A 33 LEU A 35 0 SHEET 2 AA 4 LYS A 6 TYR A 11 1 O LYS A 6 N GLU A 34 SHEET 3 AA 4 LEU A 62 TYR A 65 1 O LEU A 62 N SER A 9 SHEET 4 AA 4 ASN A 91 SER A 94 1 O ASN A 91 N PHE A 63 SHEET 1 AB 2 VAL A 107 ASN A 108 0 SHEET 2 AB 2 VAL A 121 ASP A 122 -1 O VAL A 121 N ASN A 108 SHEET 1 AC 2 PHE A 196 THR A 198 0 SHEET 2 AC 2 HIS A 201 PRO A 202 -1 O HIS A 201 N TYR A 197 SHEET 1 AD 2 TYR A 260 VAL A 262 0 SHEET 2 AD 2 LYS A 265 LYS A 267 -1 O LYS A 265 N VAL A 262 SHEET 1 BA 4 TRP B 33 LEU B 35 0 SHEET 2 BA 4 LYS B 6 TYR B 11 1 O LYS B 6 N GLU B 34 SHEET 3 BA 4 LEU B 62 TYR B 65 1 O LEU B 62 N SER B 9 SHEET 4 BA 4 ASN B 91 SER B 94 1 O ASN B 91 N PHE B 63 SHEET 1 BB 2 VAL B 107 ASN B 108 0 SHEET 2 BB 2 VAL B 121 ASP B 122 -1 O VAL B 121 N ASN B 108 SHEET 1 BC 2 PHE B 196 THR B 198 0 SHEET 2 BC 2 HIS B 201 PRO B 202 -1 O HIS B 201 N TYR B 197 SHEET 1 BD 2 TYR B 260 VAL B 262 0 SHEET 2 BD 2 LYS B 265 LYS B 267 -1 O LYS B 265 N VAL B 262 LINK S1P COA A 320 SG CYS A 14 1555 1555 1.97 LINK S1P COA B 320 SG CYS B 14 1555 1555 2.00 SITE 1 AC1 34 SER A 13 CYS A 14 GLN A 15 VAL A 68 SITE 2 AC1 34 SER A 69 TYR A 72 TYR A 97 HIS A 99 SITE 3 AC1 34 GLU A 163 ARG A 167 ASN A 172 ASN A 200 SITE 4 AC1 34 ARG A 294 HOH A2028 HOH A2030 HOH A2175 SITE 5 AC1 34 HOH A2270 HOH A2271 HOH A2272 HOH A2290 SITE 6 AC1 34 HOH A2291 HOH A2292 HOH A2293 HOH A2319 SITE 7 AC1 34 HOH A2572 HOH A2585 HOH A2586 HOH A2587 SITE 8 AC1 34 HOH A2588 HOH A2589 HOH A2590 HOH A2591 SITE 9 AC1 34 HOH A2592 HOH A2593 SITE 1 AC2 4 LYS A 6 ASP A 32 TYR A 220 HOH A2078 SITE 1 AC3 9 HIS A 141 GLU A 144 ALA A 309 PHE A 310 SITE 2 AC3 9 GLU A 311 HOH A2347 HOH A2594 ASP B 154 SITE 3 AC3 9 HOH B2224 SITE 1 AC4 25 SER B 13 CYS B 14 PHE B 42 VAL B 68 SITE 2 AC4 25 SER B 69 TYR B 72 TYR B 97 HIS B 99 SITE 3 AC4 25 GLU B 163 ARG B 167 ASN B 172 ASN B 200 SITE 4 AC4 25 ARG B 294 HOH B2100 HOH B2153 HOH B2154 SITE 5 AC4 25 HOH B2155 HOH B2170 HOH B2428 HOH B2437 SITE 6 AC4 25 HOH B2438 HOH B2439 HOH B2440 HOH B2441 SITE 7 AC4 25 HOH B2442 SITE 1 AC5 9 ALA A 188 ASN A 189 LYS B 6 ASP B 32 SITE 2 AC5 9 TRP B 33 LEU B 218 GLY B 219 TYR B 220 SITE 3 AC5 9 HOH B2444 SITE 1 AC6 5 LYS B 59 LEU B 60 ASP B 61 PRO B 87 SITE 2 AC6 5 HOH B2445 SITE 1 AC7 10 GLU B 168 SER B 181 VAL B 182 THR B 183 SITE 2 AC7 10 ASP B 184 PHE B 185 ARG B 213 HOH B2269 SITE 3 AC7 10 HOH B2446 HOH B2447 SITE 1 AC8 4 VAL A 182 ASP A 184 PHE A 185 ARG A 213 SITE 1 AC9 5 ARG B 194 LEU B 241 ASN B 258 HOH B2294 SITE 2 AC9 5 HOH B2368 SITE 1 BC1 4 ARG A 307 ARG A 308 ARG B 307 ARG B 308 SITE 1 BC2 5 ARG A 194 LEU A 241 ASN A 258 HOH A2173 SITE 2 BC2 5 HOH A2440 SITE 1 BC3 1 PRO A 87 CRYST1 46.920 68.000 71.490 63.04 76.45 69.95 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021313 -0.007778 -0.002146 0.00000 SCALE2 0.000000 0.015655 -0.007006 0.00000 SCALE3 0.000000 0.000000 0.015764 0.00000 MTRIX1 1 0.995000 0.019960 0.097850 -28.46154 1 MTRIX2 1 0.027880 -0.996380 -0.080310 179.68954 1 MTRIX3 1 0.095900 0.082640 -0.991960 60.00501 1