data_4BT1 # _entry.id 4BT1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4BT1 pdb_00004bt1 10.2210/pdb4bt1/pdb PDBE EBI-57291 ? ? WWPDB D_1290057291 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-03 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-08-07 4 'Structure model' 1 3 2017-08-23 5 'Structure model' 1 4 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' em_3d_fitting_list 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' pdbx_struct_oper_list 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.fitting_id' 2 4 'Structure model' '_em_software.image_processing_id' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_em_3d_fitting_list.accession_code' 6 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 7 5 'Structure model' '_em_3d_fitting_list.source_name' 8 5 'Structure model' '_em_3d_fitting_list.type' 9 5 'Structure model' '_pdbx_struct_oper_list.name' 10 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 11 5 'Structure model' '_pdbx_struct_oper_list.type' 12 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BT1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-06-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4BS1 unspecified 'MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION' PDB 4BT0 unspecified 'MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION' EMDB EMD-2400 'associated EM volume' 'MUB IS AN AAA+ ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mizuno, N.' 1 'Dramicanin, M.' 2 'Mizuuchi, M.' 3 'Adam, J.' 4 'Wang, Y.' 5 'Han, Y.W.' 6 'Yang, W.' 7 'Steven, A.C.' 8 'Mizuuchi, K.' 9 'Ramon-Maiques, S.' 10 # _citation.id primary _citation.title 'Mub is an Aaa+ ATPase that Forms Helical Filaments to Control Target Selection for DNA Transposition.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first E2441 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23776210 _citation.pdbx_database_id_DOI 10.1073/PNAS.1309499110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mizuno, N.' 1 ? primary 'Dramicanin, M.' 2 ? primary 'Mizuuchi, M.' 3 ? primary 'Adam, J.' 4 ? primary 'Wang, Y.' 5 ? primary 'Han, Y.W.' 6 ? primary 'Yang, W.' 7 ? primary 'Steven, A.C.' 8 ? primary 'Mizuuchi, K.' 9 ? primary 'Ramon-Maiques, S.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRANSCRIPTIONAL REGULATOR' 8562.894 1 ? ? 'AAAPLUS DOMAIN, RESIDUES 312-384' ? 2 polymer man 'TRANSCRIPTIONAL REGULATOR' 19397.400 1 ? ? 'AAAPLUS DOMAIN, RESIDUES 137-309' ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'MUB AAAPLUS ATPASE' 2 'MUB AAAPLUS ATPASE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV A ? 2 'polypeptide(L)' no no ;EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAF TGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL YYRLGVIEIEIPP ; ;EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAF TGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL YYRLGVIEIEIPP ; B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name "ADENOSINE-5'-DIPHOSPHATE" _pdbx_entity_nonpoly.comp_id ADP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 LYS n 1 4 GLU n 1 5 ASP n 1 6 ILE n 1 7 ILE n 1 8 PRO n 1 9 LEU n 1 10 ALA n 1 11 ASN n 1 12 HIS n 1 13 PHE n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 PHE n 1 18 SER n 1 19 ARG n 1 20 LYS n 1 21 TYR n 1 22 ALA n 1 23 LYS n 1 24 GLU n 1 25 VAL n 1 26 GLU n 1 27 GLY n 1 28 PHE n 1 29 THR n 1 30 LYS n 1 31 SER n 1 32 ALA n 1 33 GLN n 1 34 GLU n 1 35 LEU n 1 36 LEU n 1 37 LEU n 1 38 SER n 1 39 TYR n 1 40 PRO n 1 41 TRP n 1 42 TYR n 1 43 GLY n 1 44 ASN n 1 45 VAL n 1 46 ARG n 1 47 GLU n 1 48 LEU n 1 49 LYS n 1 50 ASN n 1 51 VAL n 1 52 ILE n 1 53 GLU n 1 54 ARG n 1 55 ALA n 1 56 VAL n 1 57 LEU n 1 58 PHE n 1 59 SER n 1 60 GLU n 1 61 GLY n 1 62 LYS n 1 63 PHE n 1 64 ILE n 1 65 ASP n 1 66 ARG n 1 67 GLY n 1 68 GLU n 1 69 LEU n 1 70 SER n 1 71 CYS n 1 72 LEU n 1 73 VAL n 2 1 GLU n 2 2 GLU n 2 3 TYR n 2 4 VAL n 2 5 PHE n 2 6 GLU n 2 7 SER n 2 8 PRO n 2 9 LYS n 2 10 MET n 2 11 LYS n 2 12 GLU n 2 13 ILE n 2 14 LEU n 2 15 GLU n 2 16 LYS n 2 17 ILE n 2 18 LYS n 2 19 LYS n 2 20 ILE n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 GLU n 2 25 CYS n 2 26 PRO n 2 27 VAL n 2 28 LEU n 2 29 ILE n 2 30 THR n 2 31 GLY n 2 32 GLU n 2 33 SER n 2 34 GLY n 2 35 VAL n 2 36 GLY n 2 37 LYS n 2 38 GLU n 2 39 VAL n 2 40 VAL n 2 41 ALA n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 HIS n 2 46 LYS n 2 47 LEU n 2 48 SER n 2 49 ASP n 2 50 ARG n 2 51 SER n 2 52 LYS n 2 53 GLU n 2 54 PRO n 2 55 PHE n 2 56 VAL n 2 57 ALA n 2 58 LEU n 2 59 ASN n 2 60 VAL n 2 61 ALA n 2 62 SER n 2 63 ILE n 2 64 PRO n 2 65 ARG n 2 66 ASP n 2 67 ILE n 2 68 PHE n 2 69 GLU n 2 70 ALA n 2 71 GLU n 2 72 LEU n 2 73 PHE n 2 74 GLY n 2 75 TYR n 2 76 GLU n 2 77 LYS n 2 78 GLY n 2 79 ALA n 2 80 PHE n 2 81 THR n 2 82 GLY n 2 83 ALA n 2 84 VAL n 2 85 SER n 2 86 SER n 2 87 LYS n 2 88 GLU n 2 89 GLY n 2 90 PHE n 2 91 PHE n 2 92 GLU n 2 93 LEU n 2 94 ALA n 2 95 ASP n 2 96 GLY n 2 97 GLY n 2 98 THR n 2 99 LEU n 2 100 PHE n 2 101 LEU n 2 102 ASP n 2 103 GLU n 2 104 ILE n 2 105 GLY n 2 106 GLU n 2 107 LEU n 2 108 SER n 2 109 LEU n 2 110 GLU n 2 111 ALA n 2 112 GLN n 2 113 ALA n 2 114 LYS n 2 115 LEU n 2 116 LEU n 2 117 ARG n 2 118 VAL n 2 119 ILE n 2 120 GLU n 2 121 SER n 2 122 GLY n 2 123 LYS n 2 124 PHE n 2 125 TYR n 2 126 ARG n 2 127 LEU n 2 128 GLY n 2 129 GLY n 2 130 ARG n 2 131 LYS n 2 132 GLU n 2 133 ILE n 2 134 GLU n 2 135 VAL n 2 136 ASN n 2 137 VAL n 2 138 ARG n 2 139 ILE n 2 140 LEU n 2 141 ALA n 2 142 ALA n 2 143 THR n 2 144 ASN n 2 145 ARG n 2 146 ASN n 2 147 ILE n 2 148 LYS n 2 149 GLU n 2 150 LEU n 2 151 VAL n 2 152 LYS n 2 153 GLU n 2 154 GLY n 2 155 LYS n 2 156 PHE n 2 157 ARG n 2 158 GLU n 2 159 ASP n 2 160 LEU n 2 161 TYR n 2 162 TYR n 2 163 ARG n 2 164 LEU n 2 165 GLY n 2 166 VAL n 2 167 ILE n 2 168 GLU n 2 169 ILE n 2 170 GLU n 2 171 ILE n 2 172 PRO n 2 173 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'ENTEROBACTERIA PHAGE MU' 10677 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'ENTEROBACTERIA PHAGE MU' 10677 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 312 312 GLU GLU A . n A 1 2 ARG 2 313 313 ARG ARG A . n A 1 3 LYS 3 314 314 LYS LYS A . n A 1 4 GLU 4 315 315 GLU GLU A . n A 1 5 ASP 5 316 316 ASP ASP A . n A 1 6 ILE 6 317 317 ILE ILE A . n A 1 7 ILE 7 318 318 ILE ILE A . n A 1 8 PRO 8 319 319 PRO PRO A . n A 1 9 LEU 9 320 320 LEU LEU A . n A 1 10 ALA 10 321 321 ALA ALA A . n A 1 11 ASN 11 322 322 ASN ASN A . n A 1 12 HIS 12 323 323 HIS HIS A . n A 1 13 PHE 13 324 324 PHE PHE A . n A 1 14 LEU 14 325 325 LEU LEU A . n A 1 15 LYS 15 326 326 LYS LYS A . n A 1 16 LYS 16 327 327 LYS LYS A . n A 1 17 PHE 17 328 328 PHE PHE A . n A 1 18 SER 18 329 329 SER SER A . n A 1 19 ARG 19 330 330 ARG ARG A . n A 1 20 LYS 20 331 331 LYS LYS A . n A 1 21 TYR 21 332 332 TYR TYR A . n A 1 22 ALA 22 333 333 ALA ALA A . n A 1 23 LYS 23 334 334 LYS LYS A . n A 1 24 GLU 24 335 335 GLU GLU A . n A 1 25 VAL 25 336 336 VAL VAL A . n A 1 26 GLU 26 337 337 GLU GLU A . n A 1 27 GLY 27 338 338 GLY GLY A . n A 1 28 PHE 28 339 339 PHE PHE A . n A 1 29 THR 29 340 340 THR THR A . n A 1 30 LYS 30 341 341 LYS LYS A . n A 1 31 SER 31 342 342 SER SER A . n A 1 32 ALA 32 343 343 ALA ALA A . n A 1 33 GLN 33 344 344 GLN GLN A . n A 1 34 GLU 34 345 345 GLU GLU A . n A 1 35 LEU 35 346 346 LEU LEU A . n A 1 36 LEU 36 347 347 LEU LEU A . n A 1 37 LEU 37 348 348 LEU LEU A . n A 1 38 SER 38 349 349 SER SER A . n A 1 39 TYR 39 350 350 TYR TYR A . n A 1 40 PRO 40 351 351 PRO PRO A . n A 1 41 TRP 41 352 352 TRP TRP A . n A 1 42 TYR 42 353 353 TYR TYR A . n A 1 43 GLY 43 354 354 GLY GLY A . n A 1 44 ASN 44 355 355 ASN ASN A . n A 1 45 VAL 45 356 356 VAL VAL A . n A 1 46 ARG 46 357 357 ARG ARG A . n A 1 47 GLU 47 358 358 GLU GLU A . n A 1 48 LEU 48 359 359 LEU LEU A . n A 1 49 LYS 49 360 360 LYS LYS A . n A 1 50 ASN 50 361 361 ASN ASN A . n A 1 51 VAL 51 362 362 VAL VAL A . n A 1 52 ILE 52 363 363 ILE ILE A . n A 1 53 GLU 53 364 364 GLU GLU A . n A 1 54 ARG 54 365 365 ARG ARG A . n A 1 55 ALA 55 366 366 ALA ALA A . n A 1 56 VAL 56 367 367 VAL VAL A . n A 1 57 LEU 57 368 368 LEU LEU A . n A 1 58 PHE 58 369 369 PHE PHE A . n A 1 59 SER 59 370 370 SER SER A . n A 1 60 GLU 60 371 371 GLU GLU A . n A 1 61 GLY 61 372 372 GLY GLY A . n A 1 62 LYS 62 373 373 LYS LYS A . n A 1 63 PHE 63 374 374 PHE PHE A . n A 1 64 ILE 64 375 375 ILE ILE A . n A 1 65 ASP 65 376 376 ASP ASP A . n A 1 66 ARG 66 377 377 ARG ARG A . n A 1 67 GLY 67 378 378 GLY GLY A . n A 1 68 GLU 68 379 379 GLU GLU A . n A 1 69 LEU 69 380 380 LEU LEU A . n A 1 70 SER 70 381 381 SER SER A . n A 1 71 CYS 71 382 382 CYS CYS A . n A 1 72 LEU 72 383 383 LEU LEU A . n A 1 73 VAL 73 384 384 VAL VAL A . n B 2 1 GLU 1 137 137 GLU GLU B . n B 2 2 GLU 2 138 138 GLU GLU B . n B 2 3 TYR 3 139 139 TYR TYR B . n B 2 4 VAL 4 140 140 VAL VAL B . n B 2 5 PHE 5 141 141 PHE PHE B . n B 2 6 GLU 6 142 142 GLU GLU B . n B 2 7 SER 7 143 143 SER SER B . n B 2 8 PRO 8 144 144 PRO PRO B . n B 2 9 LYS 9 145 145 LYS LYS B . n B 2 10 MET 10 146 146 MET MET B . n B 2 11 LYS 11 147 147 LYS LYS B . n B 2 12 GLU 12 148 148 GLU GLU B . n B 2 13 ILE 13 149 149 ILE ILE B . n B 2 14 LEU 14 150 150 LEU LEU B . n B 2 15 GLU 15 151 151 GLU GLU B . n B 2 16 LYS 16 152 152 LYS LYS B . n B 2 17 ILE 17 153 153 ILE ILE B . n B 2 18 LYS 18 154 154 LYS LYS B . n B 2 19 LYS 19 155 155 LYS LYS B . n B 2 20 ILE 20 156 156 ILE ILE B . n B 2 21 SER 21 157 157 SER SER B . n B 2 22 CYS 22 158 158 CYS CYS B . n B 2 23 ALA 23 159 159 ALA ALA B . n B 2 24 GLU 24 160 160 GLU GLU B . n B 2 25 CYS 25 161 161 CYS CYS B . n B 2 26 PRO 26 162 162 PRO PRO B . n B 2 27 VAL 27 163 163 VAL VAL B . n B 2 28 LEU 28 164 164 LEU LEU B . n B 2 29 ILE 29 165 165 ILE ILE B . n B 2 30 THR 30 166 166 THR THR B . n B 2 31 GLY 31 167 167 GLY GLY B . n B 2 32 GLU 32 168 168 GLU GLU B . n B 2 33 SER 33 169 169 SER SER B . n B 2 34 GLY 34 170 170 GLY GLY B . n B 2 35 VAL 35 171 171 VAL VAL B . n B 2 36 GLY 36 172 172 GLY GLY B . n B 2 37 LYS 37 173 173 LYS LYS B . n B 2 38 GLU 38 174 174 GLU GLU B . n B 2 39 VAL 39 175 175 VAL VAL B . n B 2 40 VAL 40 176 176 VAL VAL B . n B 2 41 ALA 41 177 177 ALA ALA B . n B 2 42 ARG 42 178 178 ARG ARG B . n B 2 43 LEU 43 179 179 LEU LEU B . n B 2 44 ILE 44 180 180 ILE ILE B . n B 2 45 HIS 45 181 181 HIS HIS B . n B 2 46 LYS 46 182 182 LYS LYS B . n B 2 47 LEU 47 183 183 LEU LEU B . n B 2 48 SER 48 184 184 SER SER B . n B 2 49 ASP 49 185 185 ASP ASP B . n B 2 50 ARG 50 186 186 ARG ARG B . n B 2 51 SER 51 187 187 SER SER B . n B 2 52 LYS 52 188 188 LYS LYS B . n B 2 53 GLU 53 189 189 GLU GLU B . n B 2 54 PRO 54 190 190 PRO PRO B . n B 2 55 PHE 55 191 191 PHE PHE B . n B 2 56 VAL 56 192 192 VAL VAL B . n B 2 57 ALA 57 193 193 ALA ALA B . n B 2 58 LEU 58 194 194 LEU LEU B . n B 2 59 ASN 59 195 195 ASN ASN B . n B 2 60 VAL 60 196 196 VAL VAL B . n B 2 61 ALA 61 197 197 ALA ALA B . n B 2 62 SER 62 198 198 SER SER B . n B 2 63 ILE 63 199 199 ILE ILE B . n B 2 64 PRO 64 200 200 PRO PRO B . n B 2 65 ARG 65 201 201 ARG ARG B . n B 2 66 ASP 66 202 202 ASP ASP B . n B 2 67 ILE 67 203 203 ILE ILE B . n B 2 68 PHE 68 204 204 PHE PHE B . n B 2 69 GLU 69 205 205 GLU GLU B . n B 2 70 ALA 70 206 206 ALA ALA B . n B 2 71 GLU 71 207 207 GLU GLU B . n B 2 72 LEU 72 208 208 LEU LEU B . n B 2 73 PHE 73 209 209 PHE PHE B . n B 2 74 GLY 74 210 210 GLY GLY B . n B 2 75 TYR 75 211 211 TYR TYR B . n B 2 76 GLU 76 212 212 GLU GLU B . n B 2 77 LYS 77 213 213 LYS LYS B . n B 2 78 GLY 78 214 214 GLY GLY B . n B 2 79 ALA 79 215 215 ALA ALA B . n B 2 80 PHE 80 216 216 PHE PHE B . n B 2 81 THR 81 217 217 THR THR B . n B 2 82 GLY 82 218 218 GLY GLY B . n B 2 83 ALA 83 219 219 ALA ALA B . n B 2 84 VAL 84 220 220 VAL VAL B . n B 2 85 SER 85 221 221 SER SER B . n B 2 86 SER 86 222 222 SER SER B . n B 2 87 LYS 87 223 223 LYS LYS B . n B 2 88 GLU 88 224 224 GLU GLU B . n B 2 89 GLY 89 225 225 GLY GLY B . n B 2 90 PHE 90 226 226 PHE PHE B . n B 2 91 PHE 91 227 227 PHE PHE B . n B 2 92 GLU 92 228 228 GLU GLU B . n B 2 93 LEU 93 229 229 LEU LEU B . n B 2 94 ALA 94 230 230 ALA ALA B . n B 2 95 ASP 95 231 231 ASP ASP B . n B 2 96 GLY 96 232 232 GLY GLY B . n B 2 97 GLY 97 233 233 GLY GLY B . n B 2 98 THR 98 234 234 THR THR B . n B 2 99 LEU 99 235 235 LEU LEU B . n B 2 100 PHE 100 236 236 PHE PHE B . n B 2 101 LEU 101 237 237 LEU LEU B . n B 2 102 ASP 102 238 238 ASP ASP B . n B 2 103 GLU 103 239 239 GLU GLU B . n B 2 104 ILE 104 240 240 ILE ILE B . n B 2 105 GLY 105 241 241 GLY GLY B . n B 2 106 GLU 106 242 242 GLU GLU B . n B 2 107 LEU 107 243 243 LEU LEU B . n B 2 108 SER 108 244 244 SER SER B . n B 2 109 LEU 109 245 245 LEU LEU B . n B 2 110 GLU 110 246 246 GLU GLU B . n B 2 111 ALA 111 247 247 ALA ALA B . n B 2 112 GLN 112 248 248 GLN GLN B . n B 2 113 ALA 113 249 249 ALA ALA B . n B 2 114 LYS 114 250 250 LYS LYS B . n B 2 115 LEU 115 251 251 LEU LEU B . n B 2 116 LEU 116 252 252 LEU LEU B . n B 2 117 ARG 117 253 253 ARG ARG B . n B 2 118 VAL 118 254 254 VAL VAL B . n B 2 119 ILE 119 255 255 ILE ILE B . n B 2 120 GLU 120 256 256 GLU GLU B . n B 2 121 SER 121 257 257 SER SER B . n B 2 122 GLY 122 258 258 GLY GLY B . n B 2 123 LYS 123 259 259 LYS LYS B . n B 2 124 PHE 124 260 260 PHE PHE B . n B 2 125 TYR 125 261 261 TYR TYR B . n B 2 126 ARG 126 262 262 ARG ARG B . n B 2 127 LEU 127 263 263 LEU LEU B . n B 2 128 GLY 128 264 264 GLY GLY B . n B 2 129 GLY 129 265 265 GLY GLY B . n B 2 130 ARG 130 266 266 ARG ARG B . n B 2 131 LYS 131 267 267 LYS LYS B . n B 2 132 GLU 132 268 268 GLU GLU B . n B 2 133 ILE 133 269 269 ILE ILE B . n B 2 134 GLU 134 270 270 GLU GLU B . n B 2 135 VAL 135 271 271 VAL VAL B . n B 2 136 ASN 136 272 272 ASN ASN B . n B 2 137 VAL 137 273 273 VAL VAL B . n B 2 138 ARG 138 274 274 ARG ARG B . n B 2 139 ILE 139 275 275 ILE ILE B . n B 2 140 LEU 140 276 276 LEU LEU B . n B 2 141 ALA 141 277 277 ALA ALA B . n B 2 142 ALA 142 278 278 ALA ALA B . n B 2 143 THR 143 279 279 THR THR B . n B 2 144 ASN 144 280 280 ASN ASN B . n B 2 145 ARG 145 281 281 ARG ARG B . n B 2 146 ASN 146 282 282 ASN ASN B . n B 2 147 ILE 147 283 283 ILE ILE B . n B 2 148 LYS 148 284 284 LYS LYS B . n B 2 149 GLU 149 285 285 GLU GLU B . n B 2 150 LEU 150 286 286 LEU LEU B . n B 2 151 VAL 151 287 287 VAL VAL B . n B 2 152 LYS 152 288 288 LYS LYS B . n B 2 153 GLU 153 289 289 GLU GLU B . n B 2 154 GLY 154 290 290 GLY GLY B . n B 2 155 LYS 155 291 291 LYS LYS B . n B 2 156 PHE 156 292 292 PHE PHE B . n B 2 157 ARG 157 293 293 ARG ARG B . n B 2 158 GLU 158 294 294 GLU GLU B . n B 2 159 ASP 159 295 295 ASP ASP B . n B 2 160 LEU 160 296 296 LEU LEU B . n B 2 161 TYR 161 297 297 TYR TYR B . n B 2 162 TYR 162 298 298 TYR TYR B . n B 2 163 ARG 163 299 299 ARG ARG B . n B 2 164 LEU 164 300 300 LEU LEU B . n B 2 165 GLY 165 301 301 GLY GLY B . n B 2 166 VAL 166 302 302 VAL VAL B . n B 2 167 ILE 167 303 303 ILE ILE B . n B 2 168 GLU 168 304 304 GLU GLU B . n B 2 169 ILE 169 305 305 ILE ILE B . n B 2 170 GLU 170 306 306 GLU GLU B . n B 2 171 ILE 171 307 307 ILE ILE B . n B 2 172 PRO 172 308 308 PRO PRO B . n B 2 173 PRO 173 309 309 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP 1 1385 1385 ADP ADP A . D 3 ADP 1 1310 1310 ADP ADP B . # _cell.entry_id 4BT1 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BT1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 4BT1 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4BT1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 16.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1969 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2023 _refine_hist.d_res_high 16.00 _refine_hist.d_res_low . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 generate ? -0.947768 -0.318959 0.000000 0.318959 -0.947768 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 -27.03000 2 generate ? -0.674302 0.738455 0.000000 -0.738455 -0.674302 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 -18.02000 3 generate ? 0.403545 0.914960 0.000000 -0.914960 0.403545 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 -9.01000 4 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5 generate ? 0.403545 -0.914960 0.000000 0.914960 0.403545 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 9.01000 6 generate ? -0.674302 -0.738455 0.000000 0.738455 -0.674302 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 18.02000 7 generate ? -0.947768 0.318959 0.000000 -0.318959 -0.947768 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 27.03000 # _database_PDB_matrix.entry_id 4BT1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4BT1 _struct.title 'MuB is an AAAplus ATPase that forms helical filaments to control target selection for DNA transposition' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BT1 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, AAAPLUS ATPASE, DNA TRANSPOSITION, SYMMETRY MISMATCH' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP O67198_AQUAE 1 ? ? O67198 ? 2 UNP O67198_AQUAE 2 ? ? O67198 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4BT1 A 1 ? 73 ? O67198 312 ? 384 ? 312 384 2 2 4BT1 B 1 ? 173 ? O67198 137 ? 309 ? 137 309 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 14 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-7)' A,B,C,D 2 4 A,B,C,D 3 H A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.94776841 -0.31895931 0.00000000 0.00000 0.31895931 -0.94776841 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -27.03000 2 'helical symmetry operation' ? ? -0.67430239 0.73845534 0.00000000 0.00000 -0.73845534 -0.67430239 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.02000 3 'helical symmetry operation' ? ? 0.40354530 0.91495967 0.00000000 0.00000 -0.91495967 0.40354530 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.01000 4 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 5 'helical symmetry operation' ? ? 0.40354530 -0.91495967 0.00000000 0.00000 0.91495967 0.40354530 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.01000 6 'helical symmetry operation' ? ? -0.67430239 -0.73845534 0.00000000 0.00000 0.73845534 -0.67430239 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.02000 7 'helical symmetry operation' ? ? -0.94776841 0.31895931 0.00000000 0.00000 -0.31895931 -0.94776841 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 27.03000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? TYR A 21 ? ARG A 313 TYR A 332 1 ? 20 HELX_P HELX_P2 2 THR A 29 ? TYR A 39 ? THR A 340 TYR A 350 1 ? 11 HELX_P HELX_P3 3 ASN A 44 ? SER A 59 ? ASN A 355 SER A 370 1 ? 16 HELX_P HELX_P4 4 ASP A 65 ? CYS A 71 ? ASP A 376 CYS A 382 1 ? 7 HELX_P HELX_P5 5 SER B 7 ? SER B 21 ? SER B 143 SER B 157 1 ? 15 HELX_P HELX_P6 6 GLY B 36 ? SER B 48 ? GLY B 172 SER B 184 1 ? 13 HELX_P HELX_P7 7 ILE B 67 ? LEU B 72 ? ILE B 203 LEU B 208 1 ? 6 HELX_P HELX_P8 8 GLY B 89 ? ALA B 94 ? GLY B 225 ALA B 230 1 ? 6 HELX_P HELX_P9 9 ILE B 104 ? LEU B 107 ? ILE B 240 LEU B 243 5 ? 4 HELX_P HELX_P10 10 SER B 108 ? SER B 121 ? SER B 244 SER B 257 1 ? 14 HELX_P HELX_P11 11 ASN B 146 ? GLU B 153 ? ASN B 282 GLU B 289 1 ? 8 HELX_P HELX_P12 12 ARG B 157 ? GLY B 165 ? ARG B 293 GLY B 301 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? BA ? 5 ? BB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel BA 1 2 ? parallel BA 2 3 ? parallel BA 3 4 ? parallel BA 4 5 ? parallel BB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 27 ? PHE A 28 ? GLY A 338 PHE A 339 AA 2 PHE A 63 ? ILE A 64 ? PHE A 374 ILE A 375 BA 1 PHE B 55 ? ASN B 59 ? PHE B 191 ASN B 195 BA 2 THR B 98 ? ASP B 102 ? THR B 234 ASP B 238 BA 3 ARG B 138 ? THR B 143 ? ARG B 274 THR B 279 BA 4 VAL B 27 ? THR B 30 ? VAL B 163 THR B 166 BA 5 ILE B 167 ? GLU B 170 ? ILE B 303 GLU B 306 BB 1 LYS B 123 ? PHE B 124 ? LYS B 259 PHE B 260 BB 2 ILE B 133 ? GLU B 134 ? ILE B 269 GLU B 270 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 O GLY A 27 ? O GLY A 338 N ILE A 64 ? N ILE A 375 BA 1 2 N VAL B 56 ? N VAL B 192 O THR B 98 ? O THR B 234 BA 2 3 N LEU B 99 ? N LEU B 235 O ARG B 138 ? O ARG B 274 BA 3 4 N ALA B 141 ? N ALA B 277 O VAL B 27 ? O VAL B 163 BA 4 5 N LEU B 28 ? N LEU B 164 O ILE B 167 ? O ILE B 303 BB 1 2 N PHE B 124 ? N PHE B 260 O ILE B 133 ? O ILE B 269 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 1385 ? 4 'BINDING SITE FOR RESIDUE ADP A 1385' AC2 Software B ADP 1310 ? 8 'BINDING SITE FOR RESIDUE ADP B 1310' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LEU A 9 ? LEU A 320 . ? 1_555 ? 2 AC1 4 VAL A 45 ? VAL A 356 . ? 1_555 ? 3 AC1 4 ARG A 46 ? ARG A 357 . ? 1_555 ? 4 AC1 4 LYS A 49 ? LYS A 360 . ? 1_555 ? 5 AC2 8 VAL B 4 ? VAL B 140 . ? 1_555 ? 6 AC2 8 SER B 33 ? SER B 169 . ? 1_555 ? 7 AC2 8 GLY B 34 ? GLY B 170 . ? 1_555 ? 8 AC2 8 VAL B 35 ? VAL B 171 . ? 1_555 ? 9 AC2 8 GLY B 36 ? GLY B 172 . ? 1_555 ? 10 AC2 8 LYS B 37 ? LYS B 173 . ? 1_555 ? 11 AC2 8 GLU B 38 ? GLU B 174 . ? 1_555 ? 12 AC2 8 VAL B 39 ? VAL B 175 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 154 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 157 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 313 ? ? -154.28 44.98 2 1 GLU A 335 ? ? -68.67 46.50 3 1 TRP A 352 ? ? 49.20 71.85 4 1 ASN A 355 ? ? 69.46 -139.91 5 1 VAL A 362 ? ? -39.68 -30.78 6 1 ARG A 377 ? ? -27.68 -38.68 7 1 LEU A 383 ? ? -113.44 -90.24 8 1 GLU B 138 ? ? -134.90 -159.88 9 1 GLU B 142 ? ? -150.17 -18.91 10 1 GLU B 148 ? ? -77.30 -79.48 11 1 ILE B 149 ? ? -31.34 -31.79 12 1 ILE B 156 ? ? -42.89 -17.17 13 1 SER B 157 ? ? -32.40 -75.71 14 1 CYS B 158 ? ? -61.39 29.92 15 1 GLU B 160 ? ? -147.52 -3.97 16 1 LYS B 173 ? ? -50.26 -79.79 17 1 GLU B 174 ? ? -46.01 -8.38 18 1 ARG B 178 ? ? -39.89 -36.56 19 1 ARG B 186 ? ? -98.05 42.24 20 1 ARG B 201 ? ? -37.51 -21.83 21 1 GLU B 205 ? ? -78.84 27.05 22 1 PHE B 209 ? ? -76.54 -83.07 23 1 LYS B 213 ? ? -33.07 160.09 24 1 THR B 217 ? ? -32.27 111.57 25 1 GLU B 224 ? ? -59.28 -161.63 26 1 LEU B 263 ? ? 81.24 -150.78 27 1 GLU B 268 ? ? -141.73 11.85 # _pdbx_helical_symmetry.entry_id 4BT1 _pdbx_helical_symmetry.number_of_operations 7 _pdbx_helical_symmetry.rotation_per_n_subunits 66.200000 _pdbx_helical_symmetry.rise_per_n_subunits 9.010000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4BT1 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 1NY6 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1NY6 # _em_3d_reconstruction.entry_id 4BT1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method IHRSR _em_3d_reconstruction.nominal_pixel_size 1.636 _em_3d_reconstruction.actual_pixel_size 1.636 _em_3d_reconstruction.resolution 16 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;HELICAL ROTATION MATRICES (BIOLOGICAL ASSEMBLY PARAMETERS) ARE INCLUDED IN THE PDB FILE. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2400. (DEPOSITION ID: 11699). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '30 MM TRISHCL PH 8.0, 0.3 M KCL, 5MM MGCL2, 1MM DTT, 1 MM ATP OR ATP-GAMMA-S' _em_buffer.pH 8 _em_buffer.details '30 MM TRISHCL PH 8.0, 0.3 M KCL, 5MM MGCL2, 1MM DTT, 1 MM ATP OR ATP-GAMMA-S' # _em_entity_assembly.id 1 _em_entity_assembly.name 'DELTAN-MUB FILAMENT WITH DNA' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 4BT1 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 50 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4BT1 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM200FEG' _em_imaging.specimen_id 1 _em_imaging.date 2011-06-02 _em_imaging.temperature 82 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 3000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 38000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 120 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4BT1 _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'LIQUID ETHANE' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4BT1 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 ILE N N N N 200 ILE CA C N S 201 ILE C C N N 202 ILE O O N N 203 ILE CB C N S 204 ILE CG1 C N N 205 ILE CG2 C N N 206 ILE CD1 C N N 207 ILE OXT O N N 208 ILE H H N N 209 ILE H2 H N N 210 ILE HA H N N 211 ILE HB H N N 212 ILE HG12 H N N 213 ILE HG13 H N N 214 ILE HG21 H N N 215 ILE HG22 H N N 216 ILE HG23 H N N 217 ILE HD11 H N N 218 ILE HD12 H N N 219 ILE HD13 H N N 220 ILE HXT H N N 221 LEU N N N N 222 LEU CA C N S 223 LEU C C N N 224 LEU O O N N 225 LEU CB C N N 226 LEU CG C N N 227 LEU CD1 C N N 228 LEU CD2 C N N 229 LEU OXT O N N 230 LEU H H N N 231 LEU H2 H N N 232 LEU HA H N N 233 LEU HB2 H N N 234 LEU HB3 H N N 235 LEU HG H N N 236 LEU HD11 H N N 237 LEU HD12 H N N 238 LEU HD13 H N N 239 LEU HD21 H N N 240 LEU HD22 H N N 241 LEU HD23 H N N 242 LEU HXT H N N 243 LYS N N N N 244 LYS CA C N S 245 LYS C C N N 246 LYS O O N N 247 LYS CB C N N 248 LYS CG C N N 249 LYS CD C N N 250 LYS CE C N N 251 LYS NZ N N N 252 LYS OXT O N N 253 LYS H H N N 254 LYS H2 H N N 255 LYS HA H N N 256 LYS HB2 H N N 257 LYS HB3 H N N 258 LYS HG2 H N N 259 LYS HG3 H N N 260 LYS HD2 H N N 261 LYS HD3 H N N 262 LYS HE2 H N N 263 LYS HE3 H N N 264 LYS HZ1 H N N 265 LYS HZ2 H N N 266 LYS HZ3 H N N 267 LYS HXT H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 PRO N N N N 312 PRO CA C N S 313 PRO C C N N 314 PRO O O N N 315 PRO CB C N N 316 PRO CG C N N 317 PRO CD C N N 318 PRO OXT O N N 319 PRO H H N N 320 PRO HA H N N 321 PRO HB2 H N N 322 PRO HB3 H N N 323 PRO HG2 H N N 324 PRO HG3 H N N 325 PRO HD2 H N N 326 PRO HD3 H N N 327 PRO HXT H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 ILE N CA sing N N 194 ILE N H sing N N 195 ILE N H2 sing N N 196 ILE CA C sing N N 197 ILE CA CB sing N N 198 ILE CA HA sing N N 199 ILE C O doub N N 200 ILE C OXT sing N N 201 ILE CB CG1 sing N N 202 ILE CB CG2 sing N N 203 ILE CB HB sing N N 204 ILE CG1 CD1 sing N N 205 ILE CG1 HG12 sing N N 206 ILE CG1 HG13 sing N N 207 ILE CG2 HG21 sing N N 208 ILE CG2 HG22 sing N N 209 ILE CG2 HG23 sing N N 210 ILE CD1 HD11 sing N N 211 ILE CD1 HD12 sing N N 212 ILE CD1 HD13 sing N N 213 ILE OXT HXT sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # _em_ctf_correction.id 1 _em_ctf_correction.details PHASE-FLIPPING _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? ? 1 2 Bsoft ? RECONSTRUCTION ? 1 ? ? 3 EMAN ? RECONSTRUCTION ? 1 ? ? 4 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.07 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NY6 # _atom_sites.entry_id 4BT1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_