HEADER HYDROLASE 20-JUL-13 4BYM TITLE STRUCTURE OF PHAZ7 PHB DEPOLYMERASE Y105E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHB DEPOLYMERASE; COMPND 5 EC: 3.1.1.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: WB800 KEYWDS HYDROLASE, CATALYTIC TRIAD, SUBSTRATE-BINDING CAVITY, BINDING CAVITY, KEYWDS 2 3HB TRIMER BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU,D.JENDROSSEK REVDAT 5 20-DEC-23 4BYM 1 REMARK LINK REVDAT 4 17-JUL-19 4BYM 1 REMARK REVDAT 3 08-MAY-19 4BYM 1 REMARK REVDAT 2 25-DEC-13 4BYM 1 JRNL REVDAT 1 18-SEP-13 4BYM 0 JRNL AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU JRNL TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF JRNL TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) JRNL TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND JRNL TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. JRNL REF MOL.MICROBIOL. V. 90 649 2013 JRNL REFN ISSN 0950-382X JRNL PMID 24007310 JRNL DOI 10.1111/MMI.12391 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 85301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8448 - 4.9409 0.95 2663 141 0.1370 0.1465 REMARK 3 2 4.9409 - 3.9317 0.96 2661 140 0.1158 0.1426 REMARK 3 3 3.9317 - 3.4377 0.97 2655 140 0.1241 0.1385 REMARK 3 4 3.4377 - 3.1247 0.98 2709 142 0.1370 0.1412 REMARK 3 5 3.1247 - 2.9015 0.98 2692 142 0.1430 0.1575 REMARK 3 6 2.9015 - 2.7308 0.98 2713 143 0.1416 0.1626 REMARK 3 7 2.7308 - 2.5944 0.99 2689 141 0.1428 0.1691 REMARK 3 8 2.5944 - 2.4817 0.98 2730 144 0.1420 0.1520 REMARK 3 9 2.4817 - 2.3863 0.98 2729 143 0.1442 0.1700 REMARK 3 10 2.3863 - 2.3041 0.99 2702 143 0.1462 0.1760 REMARK 3 11 2.3041 - 2.2321 0.98 2728 143 0.1449 0.1868 REMARK 3 12 2.2321 - 2.1684 0.99 2747 145 0.1437 0.1726 REMARK 3 13 2.1684 - 2.1114 0.99 2687 141 0.1438 0.1985 REMARK 3 14 2.1114 - 2.0599 0.99 2747 145 0.1481 0.1850 REMARK 3 15 2.0599 - 2.0132 0.99 2710 142 0.1479 0.2015 REMARK 3 16 2.0132 - 1.9703 1.00 2755 145 0.1494 0.1535 REMARK 3 17 1.9703 - 1.9310 0.99 2722 144 0.1554 0.1912 REMARK 3 18 1.9310 - 1.8946 1.00 2749 144 0.1605 0.2048 REMARK 3 19 1.8946 - 1.8607 0.99 2666 141 0.1665 0.2145 REMARK 3 20 1.8607 - 1.8292 0.99 2823 148 0.1641 0.2091 REMARK 3 21 1.8292 - 1.7997 1.00 2668 141 0.1683 0.1954 REMARK 3 22 1.7997 - 1.7721 0.99 2762 145 0.1675 0.1813 REMARK 3 23 1.7721 - 1.7460 0.99 2768 146 0.1702 0.1884 REMARK 3 24 1.7460 - 1.7214 1.00 2661 140 0.1727 0.2304 REMARK 3 25 1.7214 - 1.6982 0.99 2786 147 0.1824 0.1976 REMARK 3 26 1.6982 - 1.6762 1.00 2738 144 0.1822 0.2235 REMARK 3 27 1.6762 - 1.6552 1.00 2694 141 0.1927 0.2322 REMARK 3 28 1.6552 - 1.6353 0.99 2813 148 0.2054 0.2158 REMARK 3 29 1.6353 - 1.6163 1.00 2707 143 0.2215 0.2815 REMARK 3 30 1.6163 - 1.5981 0.80 2161 114 0.2452 0.2893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5335 REMARK 3 ANGLE : 1.037 7261 REMARK 3 CHIRALITY : 0.070 768 REMARK 3 PLANARITY : 0.005 943 REMARK 3 DIHEDRAL : 12.199 1843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BRS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION. PROTEIN REMARK 280 CONCENTRATION 10 MG/ML. 0.1 M NAOAC (PH 5.0), 0.2 M LICL, 18% W/ REMARK 280 V PEG6000, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 100.17000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 294 CG OD1 ND2 REMARK 470 ASN B 294 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2293 O HOH B 2627 1.85 REMARK 500 O HOH A 2046 O HOH A 2100 1.88 REMARK 500 O HOH B 2606 O HOH B 2608 1.91 REMARK 500 OE2 GLU B 333 O HOH A 2129 1.94 REMARK 500 O HOH B 2530 O HOH B 2531 1.96 REMARK 500 O HOH B 2203 O HOH B 2402 1.96 REMARK 500 O HOH A 2158 O HOH A 2339 1.97 REMARK 500 O HOH B 2460 O HOH B 2467 1.97 REMARK 500 O HOH B 2153 O HOH B 2154 1.97 REMARK 500 O HOH B 2194 O HOH B 2388 1.98 REMARK 500 O HOH A 2448 O HOH A 2449 1.99 REMARK 500 O TYR B 293 O HOH B 2577 2.00 REMARK 500 O HOH B 2020 O HOH B 2588 2.00 REMARK 500 OG SER B 136 O HOH B 2177 2.02 REMARK 500 O HOH A 2180 O HOH A 2346 2.03 REMARK 500 O HOH B 2389 O HOH B 2390 2.03 REMARK 500 O HOH B 2011 O HOH B 2074 2.03 REMARK 500 O HOH A 2141 O HOH A 2265 2.05 REMARK 500 O HOH A 2120 O HOH A 2121 2.05 REMARK 500 O HOH A 2298 O HOH A 2535 2.06 REMARK 500 O HOH B 2337 O HOH B 2341 2.07 REMARK 500 O HOH B 2299 O HOH B 2537 2.08 REMARK 500 O HOH A 2565 O HOH A 2567 2.08 REMARK 500 O HOH B 2293 O HOH B 2628 2.09 REMARK 500 O HOH A 2179 O HOH A 2180 2.10 REMARK 500 O HOH A 2159 O HOH A 2160 2.10 REMARK 500 O HOH B 2082 O HOH B 2147 2.10 REMARK 500 O HOH B 2180 O HOH B 2361 2.11 REMARK 500 O HOH B 2037 O HOH B 2059 2.11 REMARK 500 O HOH A 2364 O HOH A 2365 2.12 REMARK 500 O HOH B 2526 O HOH B 2529 2.12 REMARK 500 O HOH A 2575 O HOH A 2578 2.12 REMARK 500 O HOH A 2325 O HOH A 2326 2.13 REMARK 500 O HOH A 2357 O HOH A 2540 2.13 REMARK 500 O HOH B 2142 O HOH B 2282 2.14 REMARK 500 O HOH A 2112 O HOH A 2113 2.14 REMARK 500 O HOH B 2017 O HOH B 2025 2.14 REMARK 500 O HOH B 2275 O HOH B 2282 2.14 REMARK 500 O HOH B 2166 O HOH B 2373 2.14 REMARK 500 O HOH B 2177 O HOH B 2380 2.15 REMARK 500 O HOH A 2066 O HOH A 2540 2.15 REMARK 500 O HOH A 2121 O HOH A 2244 2.15 REMARK 500 OG SER A 136 O HOH A 2158 2.16 REMARK 500 O HOH B 2038 O HOH B 2087 2.16 REMARK 500 OE1 GLU B 333 O HOH A 2129 2.16 REMARK 500 O HOH A 2315 O HOH B 2251 2.16 REMARK 500 O HOH A 2321 O HOH A 2322 2.17 REMARK 500 O HOH B 2142 O HOH B 2158 2.17 REMARK 500 O HOH B 2299 O HOH B 2534 2.19 REMARK 500 O HOH A 2539 O HOH A 2540 2.19 REMARK 500 REMARK 500 THIS ENTRY HAS 52 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2529 O HOH B 2584 1455 2.03 REMARK 500 O HOH B 2045 O HOH B 2200 1655 2.04 REMARK 500 O HOH A 2117 O HOH B 2362 1656 2.08 REMARK 500 O HOH B 2214 O HOH B 2339 1656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 136 -129.83 54.75 REMARK 500 ARG A 156 -61.25 -95.75 REMARK 500 ALA A 177 45.89 -142.96 REMARK 500 SER A 186 -157.93 -81.56 REMARK 500 TYR A 204 -115.40 54.13 REMARK 500 ASN A 210 83.25 -155.53 REMARK 500 ALA B 23 84.77 -151.99 REMARK 500 SER B 136 -133.00 58.21 REMARK 500 ARG B 156 -61.84 -92.01 REMARK 500 ALA B 177 40.07 -142.02 REMARK 500 ALA B 181 65.04 -150.25 REMARK 500 SER B 186 -155.83 -83.42 REMARK 500 TYR B 204 -119.27 53.31 REMARK 500 ASN B 210 81.65 -156.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2038 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2058 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A2165 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2189 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A2190 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A2214 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2240 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2323 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2575 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A2576 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2578 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH B2051 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2062 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B2124 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2152 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B2157 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B2159 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B2162 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B2175 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2265 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2269 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B2345 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B2369 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B2630 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH B2632 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH B2633 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B2635 DISTANCE = 8.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1343 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 122 NZ REMARK 620 2 SER A 128 O 89.7 REMARK 620 3 HOH A2311 O 62.3 143.8 REMARK 620 4 HOH A2329 O 124.7 65.1 111.0 REMARK 620 5 HOH A2574 O 113.2 104.7 107.2 120.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1344 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 167 O REMARK 620 2 HOH B2416 O 72.9 REMARK 620 3 HOH B2418 O 155.2 126.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1343 DBREF 4BYM A 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 DBREF 4BYM B 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 SEQADV 4BYM GLU A 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 4BYM GLU B 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQRES 1 A 342 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 342 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 342 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 342 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 342 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 342 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 342 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 342 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 342 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 342 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 342 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 342 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 342 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 342 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 342 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 342 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 342 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 342 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 342 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 342 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 342 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 342 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 342 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 342 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 342 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 342 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 342 LYS ALA ALA TYR SEQRES 1 B 342 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 342 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 342 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 342 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 342 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 342 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 342 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 342 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 342 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 342 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 342 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 B 342 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 342 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 342 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 342 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 342 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 342 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 342 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 342 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 342 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 342 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 342 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 342 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 342 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 342 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 342 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 342 LYS ALA ALA TYR HET NA A1343 1 HET CL B1343 1 HET NA B1344 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 6 HOH *1210(H2 O) HELIX 1 1 ASN A 52 MET A 58 5 7 HELIX 2 2 SER A 72 ARG A 80 1 9 HELIX 3 3 SER A 94 GLY A 99 1 6 HELIX 4 4 SER A 100 ASN A 104 5 5 HELIX 5 5 SER A 107 GLY A 126 1 20 HELIX 6 6 SER A 136 ASN A 150 1 15 HELIX 7 7 ASN A 151 THR A 153 5 3 HELIX 8 8 LEU A 168 TYR A 172 5 5 HELIX 9 9 ALA A 181 GLY A 185 5 5 HELIX 10 10 SER A 220 ARG A 222 5 3 HELIX 11 11 ASP A 223 ARG A 228 1 6 HELIX 12 12 ALA A 238 ASP A 242 5 5 HELIX 13 13 GLY A 254 ALA A 258 5 5 HELIX 14 14 ASP A 286 GLY A 290 5 5 HELIX 15 15 PHE A 307 ASN A 312 1 6 HELIX 16 16 THR A 313 THR A 323 1 11 HELIX 17 17 THR A 326 ALA A 332 5 7 HELIX 18 18 ASN B 52 MET B 58 5 7 HELIX 19 19 SER B 72 ARG B 80 1 9 HELIX 20 20 SER B 94 GLY B 99 1 6 HELIX 21 21 SER B 100 ASN B 104 5 5 HELIX 22 22 SER B 107 GLY B 126 1 20 HELIX 23 23 SER B 136 ASN B 150 1 15 HELIX 24 24 ASN B 151 THR B 153 5 3 HELIX 25 25 LEU B 168 TYR B 172 5 5 HELIX 26 26 ALA B 181 GLY B 185 5 5 HELIX 27 27 SER B 220 ARG B 228 5 9 HELIX 28 28 ALA B 238 ASP B 242 5 5 HELIX 29 29 GLY B 254 ALA B 258 5 5 HELIX 30 30 ASP B 286 GLY B 290 5 5 HELIX 31 31 PHE B 307 ASN B 312 1 6 HELIX 32 32 THR B 313 THR B 323 1 11 HELIX 33 33 THR B 326 ALA B 332 5 7 SHEET 1 AA 9 THR A 16 TYR A 18 0 SHEET 2 AA 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA 9 VAL A 43 ILE A 46 1 O VAL A 43 N PHE A 88 SHEET 5 AA 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA 9 VAL A 155 LEU A 161 1 N ARG A 156 O VAL A 130 SHEET 7 AA 9 SER A 232 SER A 237 1 O SER A 232 N PHE A 158 SHEET 8 AA 9 VAL A 268 ASN A 273 1 N LYS A 269 O PHE A 233 SHEET 9 AA 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AB 2 GLY A 201 TYR A 203 0 SHEET 2 AB 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 BA 9 THR B 16 TYR B 18 0 SHEET 2 BA 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 BA 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 BA 9 VAL B 43 ILE B 46 1 O VAL B 43 N PHE B 88 SHEET 5 BA 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 BA 9 VAL B 155 LEU B 161 1 N ARG B 156 O VAL B 130 SHEET 7 BA 9 SER B 232 SER B 237 1 O SER B 232 N PHE B 158 SHEET 8 BA 9 VAL B 268 ASN B 273 1 N LYS B 269 O PHE B 233 SHEET 9 BA 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 BB 2 GLY B 201 TYR B 203 0 SHEET 2 BB 2 VAL B 206 VAL B 208 -1 O VAL B 206 N TYR B 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.03 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.04 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.04 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.05 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.05 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.03 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.03 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.04 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.05 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.03 LINK NZ LYS A 122 NA NA A1343 1555 1555 2.73 LINK O SER A 128 NA NA A1343 1555 1555 3.03 LINK NA NA A1343 O HOH A2311 1555 1555 2.90 LINK NA NA A1343 O HOH A2329 1555 1555 2.01 LINK NA NA A1343 O HOH A2574 1555 1555 2.54 LINK O GLY B 167 NA NA B1344 1555 1555 3.09 LINK NA NA B1344 O HOH B2416 1555 1555 2.95 LINK NA NA B1344 O HOH B2418 1555 1555 2.71 SITE 1 AC1 3 PHE B 240 ASN B 273 HOH B2517 SITE 1 AC2 6 ARG B 166 GLY B 167 TYR B 169 ALA B 258 SITE 2 AC2 6 HOH B2416 HOH B2418 SITE 1 AC3 5 LYS A 122 SER A 128 HOH A2311 HOH A2329 SITE 2 AC3 5 HOH A2574 CRYST1 41.560 200.340 44.520 90.00 114.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024062 0.000000 0.011001 0.00000 SCALE2 0.000000 0.004992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024698 0.00000