data_4C0N # _entry.id 4C0N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4C0N PDBE EBI-57890 WWPDB D_1290057890 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4C0N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-08-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hough, M.A.' 1 'Reeder, B.J.' 2 # _citation.id primary _citation.title 'The Structure of a Class 3 Nonsymbiotic Plant Haemoglobin from Arabidopsis Thaliana Reveals a Novel N-Terminal Helical Extension' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 1411 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24816109 _citation.pdbx_database_id_DOI 10.1107/S1399004714004878 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Reeder, B.J.' 1 primary 'Hough, M.A.' 2 # _cell.entry_id 4C0N _cell.length_a 123.373 _cell.length_b 123.373 _cell.length_c 123.373 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C0N _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-ON-2 HEMOGLOBIN' 20223.594 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'HYDROXIDE ION' 17.007 1 ? ? ? ? 4 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 5 water nat water 18.015 115 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NON-SYMBIOTIC PLANT HEMOGLOBIN AHB3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQSLQDKASVLSGVDQAEAFAIDESNLFDKLGLQTFINLSTNFYTRVYDDEEEWFQSIFSNSNKEDAIQNQYEFFVQRMG GPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNALDDSVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQNEKPKHK PQCACKHAANKPAEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MQSLQDKASVLSGVDQAEAFAIDESNLFDKLGLQTFINLSTNFYTRVYDDEEEWFQSIFSNSNKEDAIQNQYEFFVQRMG GPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNALDDSVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQNEKPKHK PQCACKHAANKPAEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 SER n 1 4 LEU n 1 5 GLN n 1 6 ASP n 1 7 LYS n 1 8 ALA n 1 9 SER n 1 10 VAL n 1 11 LEU n 1 12 SER n 1 13 GLY n 1 14 VAL n 1 15 ASP n 1 16 GLN n 1 17 ALA n 1 18 GLU n 1 19 ALA n 1 20 PHE n 1 21 ALA n 1 22 ILE n 1 23 ASP n 1 24 GLU n 1 25 SER n 1 26 ASN n 1 27 LEU n 1 28 PHE n 1 29 ASP n 1 30 LYS n 1 31 LEU n 1 32 GLY n 1 33 LEU n 1 34 GLN n 1 35 THR n 1 36 PHE n 1 37 ILE n 1 38 ASN n 1 39 LEU n 1 40 SER n 1 41 THR n 1 42 ASN n 1 43 PHE n 1 44 TYR n 1 45 THR n 1 46 ARG n 1 47 VAL n 1 48 TYR n 1 49 ASP n 1 50 ASP n 1 51 GLU n 1 52 GLU n 1 53 GLU n 1 54 TRP n 1 55 PHE n 1 56 GLN n 1 57 SER n 1 58 ILE n 1 59 PHE n 1 60 SER n 1 61 ASN n 1 62 SER n 1 63 ASN n 1 64 LYS n 1 65 GLU n 1 66 ASP n 1 67 ALA n 1 68 ILE n 1 69 GLN n 1 70 ASN n 1 71 GLN n 1 72 TYR n 1 73 GLU n 1 74 PHE n 1 75 PHE n 1 76 VAL n 1 77 GLN n 1 78 ARG n 1 79 MET n 1 80 GLY n 1 81 GLY n 1 82 PRO n 1 83 PRO n 1 84 LEU n 1 85 TYR n 1 86 SER n 1 87 GLN n 1 88 ARG n 1 89 LYS n 1 90 GLY n 1 91 HIS n 1 92 PRO n 1 93 ALA n 1 94 LEU n 1 95 ILE n 1 96 GLY n 1 97 ARG n 1 98 HIS n 1 99 ARG n 1 100 PRO n 1 101 PHE n 1 102 PRO n 1 103 VAL n 1 104 THR n 1 105 HIS n 1 106 GLN n 1 107 ALA n 1 108 ALA n 1 109 GLU n 1 110 ARG n 1 111 TRP n 1 112 LEU n 1 113 GLU n 1 114 HIS n 1 115 MET n 1 116 GLN n 1 117 ASN n 1 118 ALA n 1 119 LEU n 1 120 ASP n 1 121 ASP n 1 122 SER n 1 123 VAL n 1 124 ASP n 1 125 ILE n 1 126 ASP n 1 127 GLN n 1 128 ASP n 1 129 SER n 1 130 LYS n 1 131 ILE n 1 132 LYS n 1 133 MET n 1 134 MET n 1 135 LYS n 1 136 PHE n 1 137 PHE n 1 138 ARG n 1 139 HIS n 1 140 THR n 1 141 ALA n 1 142 PHE n 1 143 PHE n 1 144 LEU n 1 145 VAL n 1 146 ALA n 1 147 GLY n 1 148 ASN n 1 149 GLU n 1 150 LEU n 1 151 LYS n 1 152 ASN n 1 153 GLN n 1 154 ASN n 1 155 GLU n 1 156 LYS n 1 157 PRO n 1 158 LYS n 1 159 HIS n 1 160 LYS n 1 161 PRO n 1 162 GLN n 1 163 CYS n 1 164 ALA n 1 165 CYS n 1 166 LYS n 1 167 HIS n 1 168 ALA n 1 169 ALA n 1 170 ASN n 1 171 LYS n 1 172 PRO n 1 173 ALA n 1 174 GLU n 1 175 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'THALE CRESS' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ARABIDOPSIS THALIANA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q67XG0_ARATH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q67XG0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4C0N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q67XG0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OH non-polymer . 'HYDROXIDE ION' ? 'H O -1' 17.007 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4C0N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.88 _exptl_crystal.density_percent_sol 68.3 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.6 M AMMONIUM SULFATE, 0.1 M TRIS PH 8.2' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-01-31 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength 0.9686 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4C0N _reflns.observed_criterion_sigma_I -10.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.30 _reflns.d_resolution_high 1.77 _reflns.number_obs 31454 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.77 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 5.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4C0N _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29824 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.42 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 98.57 _refine.ls_R_factor_obs 0.18675 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18574 _refine.ls_R_factor_R_free 0.20530 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1574 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 26.274 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.082 _refine.pdbx_overall_ESU_R_Free 0.082 _refine.overall_SU_ML 0.055 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.765 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1388 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 50.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.019 ? 1371 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1243 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.510 1.972 ? 1877 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.888 3.000 ? 2861 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.507 5.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.010 24.805 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.175 15.000 ? 233 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.865 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 185 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1633 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.011 0.020 ? 365 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.028 2.522 ? 625 'X-RAY DIFFRACTION' ? r_mcbond_other 2.020 2.514 ? 624 'X-RAY DIFFRACTION' ? r_mcangle_it 3.030 3.783 ? 787 'X-RAY DIFFRACTION' ? r_mcangle_other 3.032 3.791 ? 788 'X-RAY DIFFRACTION' ? r_scbond_it 2.274 2.627 ? 746 'X-RAY DIFFRACTION' ? r_scbond_other 2.267 2.627 ? 744 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 3.456 3.866 ? 1082 'X-RAY DIFFRACTION' ? r_long_range_B_refined 5.576 20.664 ? 1757 'X-RAY DIFFRACTION' ? r_long_range_B_other 5.485 20.336 ? 1717 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.770 _refine_ls_shell.d_res_low 1.816 _refine_ls_shell.number_reflns_R_work 2197 _refine_ls_shell.R_factor_R_work 0.359 _refine_ls_shell.percent_reflns_obs 99.83 _refine_ls_shell.R_factor_R_free 0.399 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 120 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4C0N _struct.title 'Crystal structure of non symbiotic plant hemoglobin AHb3 (GLB3) from Arabidopsis thaliana' _struct.pdbx_descriptor '2-ON-2 HEMOGLOBIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4C0N _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' _struct_keywords.text 'OXYGEN TRANSPORT, 2-OVER-2 FOLD' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 13 ? SER A 3 GLY A 13 1 ? 11 HELX_P HELX_P2 2 ASP A 15 ? PHE A 20 ? ASP A 15 PHE A 20 1 ? 6 HELX_P HELX_P3 3 ALA A 21 ? SER A 25 ? ALA A 21 SER A 25 5 ? 5 HELX_P HELX_P4 4 ASN A 26 ? GLY A 32 ? ASN A 26 GLY A 32 1 ? 7 HELX_P HELX_P5 5 GLY A 32 ? ASP A 49 ? GLY A 32 ASP A 49 1 ? 18 HELX_P HELX_P6 6 GLU A 52 ? SER A 57 ? GLU A 52 SER A 57 1 ? 6 HELX_P HELX_P7 7 ILE A 58 ? SER A 60 ? ILE A 58 SER A 60 5 ? 3 HELX_P HELX_P8 8 ASN A 63 ? MET A 79 ? ASN A 63 MET A 79 1 ? 17 HELX_P HELX_P9 9 PRO A 83 ? GLY A 90 ? PRO A 83 GLY A 90 1 ? 8 HELX_P HELX_P10 10 ALA A 93 ? ARG A 99 ? ALA A 93 ARG A 99 1 ? 7 HELX_P HELX_P11 11 THR A 104 ? SER A 122 ? THR A 104 SER A 122 1 ? 19 HELX_P HELX_P12 12 ASP A 126 ? GLU A 149 ? ASP A 126 GLU A 149 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D HEM . FE ? ? ? 1_555 A HIS 98 NE2 ? ? A HEM 1157 A HIS 98 1_555 ? ? ? ? ? ? ? 2.104 ? metalc2 metalc ? ? D HEM . FE ? ? ? 1_555 C OH . O ? ? A HEM 1157 A OH 1153 1_555 ? ? ? ? ? ? ? 1.852 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE HEM A 1157' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE CL A 1152' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OH A 1153' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ILE A 58 ? ILE A 58 . ? 1_555 ? 2 AC1 20 PHE A 59 ? PHE A 59 . ? 1_555 ? 3 AC1 20 ALA A 67 ? ALA A 67 . ? 1_555 ? 4 AC1 20 ASN A 70 ? ASN A 70 . ? 1_555 ? 5 AC1 20 PHE A 74 ? PHE A 74 . ? 1_555 ? 6 AC1 20 TYR A 85 ? TYR A 85 . ? 1_555 ? 7 AC1 20 LYS A 89 ? LYS A 89 . ? 1_555 ? 8 AC1 20 HIS A 98 ? HIS A 98 . ? 1_555 ? 9 AC1 20 PHE A 101 ? PHE A 101 . ? 1_555 ? 10 AC1 20 VAL A 103 ? VAL A 103 . ? 1_555 ? 11 AC1 20 TRP A 111 ? TRP A 111 . ? 1_555 ? 12 AC1 20 PHE A 137 ? PHE A 137 . ? 1_555 ? 13 AC1 20 ALA A 141 ? ALA A 141 . ? 1_555 ? 14 AC1 20 LEU A 144 ? LEU A 144 . ? 1_555 ? 15 AC1 20 OH C . ? OH A 1153 . ? 1_555 ? 16 AC1 20 HOH E . ? HOH A 2048 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH A 2059 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH A 2068 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH A 2092 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH A 2093 . ? 1_555 ? 21 AC2 8 ALA A 93 ? ALA A 93 . ? 1_555 ? 22 AC2 8 ALA A 93 ? ALA A 93 . ? 19_666 ? 23 AC2 8 LEU A 94 ? LEU A 94 . ? 19_666 ? 24 AC2 8 LEU A 94 ? LEU A 94 . ? 1_555 ? 25 AC2 8 ILE A 95 ? ILE A 95 . ? 1_555 ? 26 AC2 8 ILE A 95 ? ILE A 95 . ? 19_666 ? 27 AC2 8 GLY A 96 ? GLY A 96 . ? 1_555 ? 28 AC2 8 GLY A 96 ? GLY A 96 . ? 19_666 ? 29 AC3 4 TYR A 44 ? TYR A 44 . ? 1_555 ? 30 AC3 4 TRP A 111 ? TRP A 111 . ? 1_555 ? 31 AC3 4 HEM D . ? HEM A 1157 . ? 1_555 ? 32 AC3 4 HOH E . ? HOH A 2047 . ? 1_555 ? # _database_PDB_matrix.entry_id 4C0N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4C0N _atom_sites.fract_transf_matrix[1][1] 0.008106 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008106 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 HIS 98 98 98 HIS HIS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 HIS 114 114 114 HIS HIS A . n A 1 115 MET 115 115 115 MET MET A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 MET 133 133 133 MET MET A . n A 1 134 MET 134 134 134 MET MET A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 HIS 139 139 139 HIS HIS A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 ASN 152 152 ? ? ? A . n A 1 153 GLN 153 153 ? ? ? A . n A 1 154 ASN 154 154 ? ? ? A . n A 1 155 GLU 155 155 ? ? ? A . n A 1 156 LYS 156 156 ? ? ? A . n A 1 157 PRO 157 157 ? ? ? A . n A 1 158 LYS 158 158 ? ? ? A . n A 1 159 HIS 159 159 ? ? ? A . n A 1 160 LYS 160 160 ? ? ? A . n A 1 161 PRO 161 161 ? ? ? A . n A 1 162 GLN 162 162 ? ? ? A . n A 1 163 CYS 163 163 ? ? ? A . n A 1 164 ALA 164 164 ? ? ? A . n A 1 165 CYS 165 165 ? ? ? A . n A 1 166 LYS 166 166 ? ? ? A . n A 1 167 HIS 167 167 ? ? ? A . n A 1 168 ALA 168 168 ? ? ? A . n A 1 169 ALA 169 169 ? ? ? A . n A 1 170 ASN 170 170 ? ? ? A . n A 1 171 LYS 171 171 ? ? ? A . n A 1 172 PRO 172 172 ? ? ? A . n A 1 173 ALA 173 173 ? ? ? A . n A 1 174 GLU 174 174 ? ? ? A . n A 1 175 GLU 175 175 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1152 1152 CL CL A . C 3 OH 1 1153 1153 OH OH A . D 4 HEM 1 1157 1157 HEM HEM A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2050 2050 HOH HOH A . E 5 HOH 50 2051 2051 HOH HOH A . E 5 HOH 51 2052 2052 HOH HOH A . E 5 HOH 52 2053 2053 HOH HOH A . E 5 HOH 53 2054 2054 HOH HOH A . E 5 HOH 54 2055 2055 HOH HOH A . E 5 HOH 55 2056 2056 HOH HOH A . E 5 HOH 56 2057 2057 HOH HOH A . E 5 HOH 57 2058 2058 HOH HOH A . E 5 HOH 58 2059 2059 HOH HOH A . E 5 HOH 59 2060 2060 HOH HOH A . E 5 HOH 60 2061 2061 HOH HOH A . E 5 HOH 61 2062 2062 HOH HOH A . E 5 HOH 62 2063 2063 HOH HOH A . E 5 HOH 63 2064 2064 HOH HOH A . E 5 HOH 64 2065 2065 HOH HOH A . E 5 HOH 65 2066 2066 HOH HOH A . E 5 HOH 66 2067 2067 HOH HOH A . E 5 HOH 67 2068 2068 HOH HOH A . E 5 HOH 68 2069 2069 HOH HOH A . E 5 HOH 69 2070 2070 HOH HOH A . E 5 HOH 70 2071 2071 HOH HOH A . E 5 HOH 71 2072 2072 HOH HOH A . E 5 HOH 72 2073 2073 HOH HOH A . E 5 HOH 73 2074 2074 HOH HOH A . E 5 HOH 74 2075 2075 HOH HOH A . E 5 HOH 75 2076 2076 HOH HOH A . E 5 HOH 76 2077 2077 HOH HOH A . E 5 HOH 77 2078 2078 HOH HOH A . E 5 HOH 78 2079 2079 HOH HOH A . E 5 HOH 79 2080 2080 HOH HOH A . E 5 HOH 80 2081 2081 HOH HOH A . E 5 HOH 81 2082 2082 HOH HOH A . E 5 HOH 82 2083 2083 HOH HOH A . E 5 HOH 83 2084 2084 HOH HOH A . E 5 HOH 84 2085 2085 HOH HOH A . E 5 HOH 85 2086 2086 HOH HOH A . E 5 HOH 86 2087 2087 HOH HOH A . E 5 HOH 87 2088 2088 HOH HOH A . E 5 HOH 88 2089 2089 HOH HOH A . E 5 HOH 89 2090 2090 HOH HOH A . E 5 HOH 90 2091 2091 HOH HOH A . E 5 HOH 91 2092 2092 HOH HOH A . E 5 HOH 92 2093 2093 HOH HOH A . E 5 HOH 93 2094 2094 HOH HOH A . E 5 HOH 94 2095 2095 HOH HOH A . E 5 HOH 95 2096 2096 HOH HOH A . E 5 HOH 96 2097 2097 HOH HOH A . E 5 HOH 97 2098 2098 HOH HOH A . E 5 HOH 98 2099 2099 HOH HOH A . E 5 HOH 99 2100 2100 HOH HOH A . E 5 HOH 100 2101 2101 HOH HOH A . E 5 HOH 101 2102 2102 HOH HOH A . E 5 HOH 102 2103 2103 HOH HOH A . E 5 HOH 103 2104 2104 HOH HOH A . E 5 HOH 104 2105 2105 HOH HOH A . E 5 HOH 105 2106 2106 HOH HOH A . E 5 HOH 106 2107 2107 HOH HOH A . E 5 HOH 107 2108 2108 HOH HOH A . E 5 HOH 108 2109 2109 HOH HOH A . E 5 HOH 109 2110 2110 HOH HOH A . E 5 HOH 110 2111 2111 HOH HOH A . E 5 HOH 111 2112 2112 HOH HOH A . E 5 HOH 112 2113 2113 HOH HOH A . E 5 HOH 113 2114 2114 HOH HOH A . E 5 HOH 114 2115 2115 HOH HOH A . E 5 HOH 115 2116 2116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5010 ? 1 MORE -82.6 ? 1 'SSA (A^2)' 12710 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 19_666 -x+5/4,-z+5/4,-y+5/4 -1.0000000000 0.0000000000 0.0000000000 154.2162500000 0.0000000000 0.0000000000 -1.0000000000 154.2162500000 0.0000000000 -1.0000000000 0.0000000000 154.2162500000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 1152 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 98 ? A HIS 98 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NA ? D HEM . ? A HEM 1157 ? 1_555 87.1 ? 2 NE2 ? A HIS 98 ? A HIS 98 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NB ? D HEM . ? A HEM 1157 ? 1_555 91.1 ? 3 NA ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NB ? D HEM . ? A HEM 1157 ? 1_555 87.0 ? 4 NE2 ? A HIS 98 ? A HIS 98 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NC ? D HEM . ? A HEM 1157 ? 1_555 92.7 ? 5 NA ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NC ? D HEM . ? A HEM 1157 ? 1_555 179.1 ? 6 NB ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 NC ? D HEM . ? A HEM 1157 ? 1_555 92.1 ? 7 NE2 ? A HIS 98 ? A HIS 98 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 ND ? D HEM . ? A HEM 1157 ? 1_555 88.7 ? 8 NA ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 ND ? D HEM . ? A HEM 1157 ? 1_555 92.8 ? 9 NB ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 ND ? D HEM . ? A HEM 1157 ? 1_555 179.7 ? 10 NC ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 ND ? D HEM . ? A HEM 1157 ? 1_555 88.1 ? 11 NE2 ? A HIS 98 ? A HIS 98 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 O ? C OH . ? A OH 1153 ? 1_555 174.7 ? 12 NA ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 O ? C OH . ? A OH 1153 ? 1_555 87.8 ? 13 NB ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 O ? C OH . ? A OH 1153 ? 1_555 89.9 ? 14 NC ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 O ? C OH . ? A OH 1153 ? 1_555 92.4 ? 15 ND ? D HEM . ? A HEM 1157 ? 1_555 FE ? D HEM . ? A HEM 1157 ? 1_555 O ? C OH . ? A OH 1153 ? 1_555 90.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-14 2 'Structure model' 1 1 2014-05-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0032 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 18 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2011 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2086 ? ? 1_555 O A HOH 2087 ? ? 19_666 0.73 2 1 O A HOH 2030 ? ? 1_555 O A HOH 2030 ? ? 19_666 1.13 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 53 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 53 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.262 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation -0.253 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 53 ? CD ? A GLU 53 CD 2 1 Y 0 A GLU 53 ? OE1 ? A GLU 53 OE1 3 1 Y 0 A GLU 53 ? OE2 ? A GLU 53 OE2 4 1 Y 0 A VAL 123 ? CG1 ? A VAL 123 CG1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 152 ? A ASN 152 3 1 Y 1 A GLN 153 ? A GLN 153 4 1 Y 1 A ASN 154 ? A ASN 154 5 1 Y 1 A GLU 155 ? A GLU 155 6 1 Y 1 A LYS 156 ? A LYS 156 7 1 Y 1 A PRO 157 ? A PRO 157 8 1 Y 1 A LYS 158 ? A LYS 158 9 1 Y 1 A HIS 159 ? A HIS 159 10 1 Y 1 A LYS 160 ? A LYS 160 11 1 Y 1 A PRO 161 ? A PRO 161 12 1 Y 1 A GLN 162 ? A GLN 162 13 1 Y 1 A CYS 163 ? A CYS 163 14 1 Y 1 A ALA 164 ? A ALA 164 15 1 Y 1 A CYS 165 ? A CYS 165 16 1 Y 1 A LYS 166 ? A LYS 166 17 1 Y 1 A HIS 167 ? A HIS 167 18 1 Y 1 A ALA 168 ? A ALA 168 19 1 Y 1 A ALA 169 ? A ALA 169 20 1 Y 1 A ASN 170 ? A ASN 170 21 1 Y 1 A LYS 171 ? A LYS 171 22 1 Y 1 A PRO 172 ? A PRO 172 23 1 Y 1 A ALA 173 ? A ALA 173 24 1 Y 1 A GLU 174 ? A GLU 174 25 1 Y 1 A GLU 175 ? A GLU 175 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'HYDROXIDE ION' OH 4 'PROTOPORPHYRIN IX CONTAINING FE' HEM 5 water HOH #