data_4C3Q # _entry.id 4C3Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4C3Q PDBE EBI-58178 WWPDB D_1290058178 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4C3Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-08-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coates, L.' 1 'Tomanicek, S.J.' 2 'Schrader, T.' 3 'Weiss, K.L.' 4 'Ng, J.D.' 5 'Ostermann, A.' 6 # _citation.id primary _citation.title 'Cryogenic Neutron Protein Crystallography: Routine Methods and Potential Benefits' _citation.journal_abbrev J.Appl.Crystallogr. _citation.journal_volume 47 _citation.page_first ? _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM JACGAR _citation.country US _citation.journal_id_ISSN 1600-5767 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1107/S1600576714010772 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Coates, L.' 1 primary 'Tomanicek, S.J.' 2 primary 'Schrader, T.' 3 primary 'Weiss, K.L.' 4 primary 'Ng, J.D.' 5 primary 'Ostermann, A.' 6 # _cell.entry_id 4C3Q _cell.length_a 72.889 _cell.length_b 72.889 _cell.length_c 98.189 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C3Q _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BETA-LACTAMASE TOHO-1' 28104.713 1 3.5.2.6 YES ? PERDEUTERATED 2 non-polymer syn 'BENZO[B]THIOPHENE-2-BORONIC ACID' 178.016 1 ? ? ? ? 3 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TOHO-1 BETA-LACTAMASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NSVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNP IAEKHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPGDPRDTTTPLAMA QTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPE QKAENRNDILAAAAKIVTHGF ; _entity_poly.pdbx_seq_one_letter_code_can ;NSVQQQLEALEKSSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNP IAEKHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPGDPRDTTTPLAMA QTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPE QKAENRNDILAAAAKIVTHGF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 SER n 1 3 VAL n 1 4 GLN n 1 5 GLN n 1 6 GLN n 1 7 LEU n 1 8 GLU n 1 9 ALA n 1 10 LEU n 1 11 GLU n 1 12 LYS n 1 13 SER n 1 14 SER n 1 15 GLY n 1 16 GLY n 1 17 ARG n 1 18 LEU n 1 19 GLY n 1 20 VAL n 1 21 ALA n 1 22 LEU n 1 23 ILE n 1 24 ASN n 1 25 THR n 1 26 ALA n 1 27 ASP n 1 28 ASN n 1 29 SER n 1 30 GLN n 1 31 ILE n 1 32 LEU n 1 33 TYR n 1 34 ARG n 1 35 ALA n 1 36 ASP n 1 37 GLU n 1 38 ARG n 1 39 PHE n 1 40 ALA n 1 41 MET n 1 42 CYS n 1 43 SER n 1 44 THR n 1 45 SER n 1 46 LYS n 1 47 VAL n 1 48 MET n 1 49 ALA n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 VAL n 1 54 LEU n 1 55 LYS n 1 56 GLN n 1 57 SER n 1 58 GLU n 1 59 SER n 1 60 ASP n 1 61 LYS n 1 62 HIS n 1 63 LEU n 1 64 LEU n 1 65 ASN n 1 66 GLN n 1 67 ARG n 1 68 VAL n 1 69 GLU n 1 70 ILE n 1 71 LYS n 1 72 LYS n 1 73 SER n 1 74 ASP n 1 75 LEU n 1 76 VAL n 1 77 ASN n 1 78 TYR n 1 79 ASN n 1 80 PRO n 1 81 ILE n 1 82 ALA n 1 83 GLU n 1 84 LYS n 1 85 HIS n 1 86 VAL n 1 87 ASN n 1 88 GLY n 1 89 THR n 1 90 MET n 1 91 THR n 1 92 LEU n 1 93 ALA n 1 94 GLU n 1 95 LEU n 1 96 GLY n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 LEU n 1 101 GLN n 1 102 TYR n 1 103 SER n 1 104 ASP n 1 105 ASN n 1 106 THR n 1 107 ALA n 1 108 MET n 1 109 ASN n 1 110 LYS n 1 111 LEU n 1 112 ILE n 1 113 ALA n 1 114 HIS n 1 115 LEU n 1 116 GLY n 1 117 GLY n 1 118 PRO n 1 119 ASP n 1 120 LYS n 1 121 VAL n 1 122 THR n 1 123 ALA n 1 124 PHE n 1 125 ALA n 1 126 ARG n 1 127 SER n 1 128 LEU n 1 129 GLY n 1 130 ASP n 1 131 GLU n 1 132 THR n 1 133 PHE n 1 134 ARG n 1 135 LEU n 1 136 ASP n 1 137 ARG n 1 138 THR n 1 139 GLU n 1 140 PRO n 1 141 THR n 1 142 LEU n 1 143 ASN n 1 144 THR n 1 145 ALA n 1 146 ILE n 1 147 PRO n 1 148 GLY n 1 149 ASP n 1 150 PRO n 1 151 ARG n 1 152 ASP n 1 153 THR n 1 154 THR n 1 155 THR n 1 156 PRO n 1 157 LEU n 1 158 ALA n 1 159 MET n 1 160 ALA n 1 161 GLN n 1 162 THR n 1 163 LEU n 1 164 LYS n 1 165 ASN n 1 166 LEU n 1 167 THR n 1 168 LEU n 1 169 GLY n 1 170 LYS n 1 171 ALA n 1 172 LEU n 1 173 ALA n 1 174 GLU n 1 175 THR n 1 176 GLN n 1 177 ARG n 1 178 ALA n 1 179 GLN n 1 180 LEU n 1 181 VAL n 1 182 THR n 1 183 TRP n 1 184 LEU n 1 185 LYS n 1 186 GLY n 1 187 ASN n 1 188 THR n 1 189 THR n 1 190 GLY n 1 191 SER n 1 192 ALA n 1 193 SER n 1 194 ILE n 1 195 ARG n 1 196 ALA n 1 197 GLY n 1 198 LEU n 1 199 PRO n 1 200 LYS n 1 201 SER n 1 202 TRP n 1 203 VAL n 1 204 VAL n 1 205 GLY n 1 206 ASP n 1 207 LYS n 1 208 THR n 1 209 GLY n 1 210 SER n 1 211 GLY n 1 212 ASP n 1 213 TYR n 1 214 GLY n 1 215 THR n 1 216 THR n 1 217 ASN n 1 218 ASP n 1 219 ILE n 1 220 ALA n 1 221 VAL n 1 222 ILE n 1 223 TRP n 1 224 PRO n 1 225 GLU n 1 226 ASN n 1 227 HIS n 1 228 ALA n 1 229 PRO n 1 230 LEU n 1 231 VAL n 1 232 LEU n 1 233 VAL n 1 234 THR n 1 235 TYR n 1 236 PHE n 1 237 THR n 1 238 GLN n 1 239 PRO n 1 240 GLU n 1 241 GLN n 1 242 LYS n 1 243 ALA n 1 244 GLU n 1 245 ASN n 1 246 ARG n 1 247 ASN n 1 248 ASP n 1 249 ILE n 1 250 LEU n 1 251 ALA n 1 252 ALA n 1 253 ALA n 1 254 ALA n 1 255 LYS n 1 256 ILE n 1 257 VAL n 1 258 THR n 1 259 HIS n 1 260 GLY n 1 261 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain BL21 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 511693 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLT1_ECOL _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q47066 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4C3Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q47066 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 290 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4C3Q ASN A 245 ? UNP Q47066 ARG 275 'engineered mutation' 274 1 1 4C3Q ASN A 247 ? UNP Q47066 ARG 277 'engineered mutation' 276 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BZB non-polymer . 'BENZO[B]THIOPHENE-2-BORONIC ACID' ? 'C8 H7 B O2 S' 178.016 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4C3Q _exptl.method 'NEUTRON DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 5.6' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date 2012-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator 'PYROLYTIC GRAPHITE' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type neutron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 2.67 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'NUCLEAR REACTOR' _diffrn_source.type 'FRM II BEAMLINE BIODIFF' _diffrn_source.pdbx_synchrotron_site 'FRM II' _diffrn_source.pdbx_synchrotron_beamline BIODIFF _diffrn_source.pdbx_wavelength 2.67 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4C3Q _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 282104 _reflns.number_all ? _reflns.percent_possible_obs 88.6 _reflns.pdbx_Rmerge_I_obs 0.16 _reflns.pdbx_Rsym_value 0.16 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 # _refine.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine.entry_id 4C3Q _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13945 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 9.996 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 89.36 _refine.ls_R_factor_obs 0.1944 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1924 _refine.ls_R_factor_R_free 0.2400 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 758 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1970 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 2107 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 9.996 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.174 ? ? 4226 'NEUTRON DIFFRACTION' ? f_angle_d 0.5290 ? ? 7362 'NEUTRON DIFFRACTION' ? f_dihedral_angle_d 27.457 ? ? 1102 'NEUTRON DIFFRACTION' ? f_chiral_restr 0.043 ? ? 322 'NEUTRON DIFFRACTION' ? f_plane_restr 0.008 ? ? 633 'NEUTRON DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'NEUTRON DIFFRACTION' . 2.2011 2.3686 2244 0.1838 73.00 0.2342 . . 129 . . 'NEUTRON DIFFRACTION' . 2.3686 2.6025 2571 0.1839 83.00 0.2564 . . 134 . . 'NEUTRON DIFFRACTION' . 2.6025 2.9689 2634 0.1987 86.00 0.2670 . . 150 . . 'NEUTRON DIFFRACTION' . 2.9689 3.7030 2845 0.2060 91.00 0.2437 . . 138 . . 'NEUTRON DIFFRACTION' . 3.7030 9.4809 2920 0.1863 91.00 0.1977 . . 139 . . # _struct.entry_id 4C3Q _struct.title ;Neutron structure of a perdeuterated Toho-1 R274N R276N double mutant Beta-lactamase in complex with a fully deuterated boronic acid (BZB) at 100K ; _struct.pdbx_descriptor 'BETA-LACTAMASE TOHO-1 (E.C.3.5.2.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4C3Q _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, TOHO-1, PERDEUTERATED NEUTRON STRUCTURE, EXTENDED-SPECTRUM BETA LACTAMASES, CTX- M-TYPE ESBLS, CRYOGENIC NEUTRON' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLY A 15 ? SER A 28 GLY A 41 1 ? 14 HELX_P HELX_P2 2 CYS A 42 ? THR A 44 ? CYS A 69 THR A 71 5 ? 3 HELX_P HELX_P3 3 SER A 45 ? SER A 59 ? SER A 72 SER A 86 1 ? 15 HELX_P HELX_P4 4 LYS A 71 ? LEU A 75 ? LYS A 98 LEU A 102 5 ? 5 HELX_P HELX_P5 5 ILE A 81 ? VAL A 86 ? ILE A 108 VAL A 113 5 ? 6 HELX_P HELX_P6 6 LEU A 92 ? TYR A 102 ? LEU A 119 TYR A 129 1 ? 11 HELX_P HELX_P7 7 ASP A 104 ? GLY A 116 ? ASP A 131 GLY A 143 1 ? 13 HELX_P HELX_P8 8 GLY A 117 ? LEU A 128 ? GLY A 144 LEU A 155 1 ? 12 HELX_P HELX_P9 9 PRO A 140 ? THR A 144 ? PRO A 167 THR A 171 5 ? 5 HELX_P HELX_P10 10 THR A 155 ? LEU A 168 ? THR A 182 LEU A 195 1 ? 14 HELX_P HELX_P11 11 ALA A 173 ? GLY A 186 ? ALA A 200 GLY A 213 1 ? 14 HELX_P HELX_P12 12 SER A 193 ? LEU A 198 ? SER A 220 LEU A 225 5 ? 6 HELX_P HELX_P13 13 ARG A 246 ? HIS A 259 ? ARG A 275 HIS A 288 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id BZB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id B _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BZB _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.450 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 139 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 166 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 140 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 167 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 30 ? TYR A 33 ? GLN A 56 TYR A 60 AA 2 ARG A 17 ? ASN A 24 ? ARG A 43 ASN A 50 AA 3 LEU A 230 ? THR A 237 ? LEU A 259 THR A 266 AA 4 THR A 216 ? TRP A 223 ? THR A 244 TRP A 251 AA 5 VAL A 203 ? SER A 210 ? VAL A 230 SER A 237 AB 1 PHE A 39 ? ALA A 40 ? PHE A 66 ALA A 67 AB 2 THR A 153 ? THR A 154 ? THR A 180 THR A 181 AC 1 ARG A 67 ? ILE A 70 ? ARG A 94 ILE A 97 AC 2 GLY A 88 ? THR A 91 ? GLY A 115 THR A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 33 ? N TYR A 60 O VAL A 20 ? O VAL A 46 AA 2 3 N ILE A 23 ? N ILE A 49 O VAL A 231 ? O VAL A 260 AA 3 4 O PHE A 236 ? O PHE A 265 N THR A 216 ? N THR A 244 AA 4 5 N TRP A 223 ? N TRP A 251 O VAL A 203 ? O VAL A 230 AB 1 2 N PHE A 39 ? N PHE A 66 O THR A 154 ? O THR A 181 AC 1 2 N ILE A 70 ? N ILE A 97 O GLY A 88 ? O GLY A 115 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE BZB A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 CYS A 42 ? CYS A 69 . ? 1_555 ? 2 AC1 10 SER A 43 ? SER A 70 . ? 1_555 ? 3 AC1 10 ASN A 77 ? ASN A 104 . ? 1_555 ? 4 AC1 10 TYR A 78 ? TYR A 105 . ? 1_555 ? 5 AC1 10 SER A 103 ? SER A 130 . ? 1_555 ? 6 AC1 10 ASN A 105 ? ASN A 132 . ? 1_555 ? 7 AC1 10 PRO A 140 ? PRO A 167 . ? 1_555 ? 8 AC1 10 ASN A 143 ? ASN A 170 . ? 1_555 ? 9 AC1 10 GLY A 209 ? GLY A 236 . ? 1_555 ? 10 AC1 10 SER A 210 ? SER A 237 . ? 1_555 ? # _database_PDB_matrix.entry_id 4C3Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4C3Q _atom_sites.fract_transf_matrix[1][1] 0.013719 _atom_sites.fract_transf_matrix[1][2] 0.007921 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015842 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010184 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol B C D N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 27 27 ASN ASN A . n A 1 2 SER 2 28 28 SER SER A . n A 1 3 VAL 3 29 29 VAL VAL A . n A 1 4 GLN 4 30 30 GLN GLN A . n A 1 5 GLN 5 31 31 GLN GLN A . n A 1 6 GLN 6 32 32 GLN GLN A . n A 1 7 LEU 7 33 33 LEU LEU A . n A 1 8 GLU 8 34 34 GLU GLU A . n A 1 9 ALA 9 35 35 ALA ALA A . n A 1 10 LEU 10 36 36 LEU LEU A . n A 1 11 GLU 11 37 37 GLU GLU A . n A 1 12 LYS 12 38 38 LYS LYS A . n A 1 13 SER 13 39 39 SER SER A . n A 1 14 SER 14 40 40 SER SER A . n A 1 15 GLY 15 41 41 GLY GLY A . n A 1 16 GLY 16 42 42 GLY GLY A . n A 1 17 ARG 17 43 43 ARG ARG A . n A 1 18 LEU 18 44 44 LEU LEU A . n A 1 19 GLY 19 45 45 GLY GLY A . n A 1 20 VAL 20 46 46 VAL VAL A . n A 1 21 ALA 21 47 47 ALA ALA A . n A 1 22 LEU 22 48 48 LEU LEU A . n A 1 23 ILE 23 49 49 ILE ILE A . n A 1 24 ASN 24 50 50 ASN ASN A . n A 1 25 THR 25 51 51 THR THR A . n A 1 26 ALA 26 52 52 ALA ALA A . n A 1 27 ASP 27 53 53 ASP ASP A . n A 1 28 ASN 28 54 54 ASN ASN A . n A 1 29 SER 29 55 55 SER SER A . n A 1 30 GLN 30 56 56 GLN GLN A . n A 1 31 ILE 31 57 57 ILE ILE A . n A 1 32 LEU 32 59 59 LEU LEU A . n A 1 33 TYR 33 60 60 TYR TYR A . n A 1 34 ARG 34 61 61 ARG ARG A . n A 1 35 ALA 35 62 62 ALA ALA A . n A 1 36 ASP 36 63 63 ASP ASP A . n A 1 37 GLU 37 64 64 GLU GLU A . n A 1 38 ARG 38 65 65 ARG ARG A . n A 1 39 PHE 39 66 66 PHE PHE A . n A 1 40 ALA 40 67 67 ALA ALA A . n A 1 41 MET 41 68 68 MET MET A . n A 1 42 CYS 42 69 69 CYS CYS A . n A 1 43 SER 43 70 70 SER SER A . n A 1 44 THR 44 71 71 THR THR A . n A 1 45 SER 45 72 72 SER SER A . n A 1 46 LYS 46 73 73 LYS LYS A . n A 1 47 VAL 47 74 74 VAL VAL A . n A 1 48 MET 48 75 75 MET MET A . n A 1 49 ALA 49 76 76 ALA ALA A . n A 1 50 ALA 50 77 77 ALA ALA A . n A 1 51 ALA 51 78 78 ALA ALA A . n A 1 52 ALA 52 79 79 ALA ALA A . n A 1 53 VAL 53 80 80 VAL VAL A . n A 1 54 LEU 54 81 81 LEU LEU A . n A 1 55 LYS 55 82 82 LYS LYS A . n A 1 56 GLN 56 83 83 GLN GLN A . n A 1 57 SER 57 84 84 SER SER A . n A 1 58 GLU 58 85 85 GLU GLU A . n A 1 59 SER 59 86 86 SER SER A . n A 1 60 ASP 60 87 87 ASP ASP A . n A 1 61 LYS 61 88 88 LYS LYS A . n A 1 62 HIS 62 89 89 HIS HIS A . n A 1 63 LEU 63 90 90 LEU LEU A . n A 1 64 LEU 64 91 91 LEU LEU A . n A 1 65 ASN 65 92 92 ASN ASN A . n A 1 66 GLN 66 93 93 GLN GLN A . n A 1 67 ARG 67 94 94 ARG ARG A . n A 1 68 VAL 68 95 95 VAL VAL A . n A 1 69 GLU 69 96 96 GLU GLU A . n A 1 70 ILE 70 97 97 ILE ILE A . n A 1 71 LYS 71 98 98 LYS LYS A . n A 1 72 LYS 72 99 99 LYS LYS A . n A 1 73 SER 73 100 100 SER SER A . n A 1 74 ASP 74 101 101 ASP ASP A . n A 1 75 LEU 75 102 102 LEU LEU A . n A 1 76 VAL 76 103 103 VAL VAL A . n A 1 77 ASN 77 104 104 ASN ASN A . n A 1 78 TYR 78 105 105 TYR TYR A . n A 1 79 ASN 79 106 106 ASN ASN A . n A 1 80 PRO 80 107 107 PRO PRO A . n A 1 81 ILE 81 108 108 ILE ILE A . n A 1 82 ALA 82 109 109 ALA ALA A . n A 1 83 GLU 83 110 110 GLU GLU A . n A 1 84 LYS 84 111 111 LYS LYS A . n A 1 85 HIS 85 112 112 HIS HIS A . n A 1 86 VAL 86 113 113 VAL VAL A . n A 1 87 ASN 87 114 114 ASN ASN A . n A 1 88 GLY 88 115 115 GLY GLY A . n A 1 89 THR 89 116 116 THR THR A . n A 1 90 MET 90 117 117 MET MET A . n A 1 91 THR 91 118 118 THR THR A . n A 1 92 LEU 92 119 119 LEU LEU A . n A 1 93 ALA 93 120 120 ALA ALA A . n A 1 94 GLU 94 121 121 GLU GLU A . n A 1 95 LEU 95 122 122 LEU LEU A . n A 1 96 GLY 96 123 123 GLY GLY A . n A 1 97 ALA 97 124 124 ALA ALA A . n A 1 98 ALA 98 125 125 ALA ALA A . n A 1 99 ALA 99 126 126 ALA ALA A . n A 1 100 LEU 100 127 127 LEU LEU A . n A 1 101 GLN 101 128 128 GLN GLN A . n A 1 102 TYR 102 129 129 TYR TYR A . n A 1 103 SER 103 130 130 SER SER A . n A 1 104 ASP 104 131 131 ASP ASP A . n A 1 105 ASN 105 132 132 ASN ASN A . n A 1 106 THR 106 133 133 THR THR A . n A 1 107 ALA 107 134 134 ALA ALA A . n A 1 108 MET 108 135 135 MET MET A . n A 1 109 ASN 109 136 136 ASN ASN A . n A 1 110 LYS 110 137 137 LYS LYS A . n A 1 111 LEU 111 138 138 LEU LEU A . n A 1 112 ILE 112 139 139 ILE ILE A . n A 1 113 ALA 113 140 140 ALA ALA A . n A 1 114 HIS 114 141 141 HIS HIS A . n A 1 115 LEU 115 142 142 LEU LEU A . n A 1 116 GLY 116 143 143 GLY GLY A . n A 1 117 GLY 117 144 144 GLY GLY A . n A 1 118 PRO 118 145 145 PRO PRO A . n A 1 119 ASP 119 146 146 ASP ASP A . n A 1 120 LYS 120 147 147 LYS LYS A . n A 1 121 VAL 121 148 148 VAL VAL A . n A 1 122 THR 122 149 149 THR THR A . n A 1 123 ALA 123 150 150 ALA ALA A . n A 1 124 PHE 124 151 151 PHE PHE A . n A 1 125 ALA 125 152 152 ALA ALA A . n A 1 126 ARG 126 153 153 ARG ARG A . n A 1 127 SER 127 154 154 SER SER A . n A 1 128 LEU 128 155 155 LEU LEU A . n A 1 129 GLY 129 156 156 GLY GLY A . n A 1 130 ASP 130 157 157 ASP ASP A . n A 1 131 GLU 131 158 158 GLU GLU A . n A 1 132 THR 132 159 159 THR THR A . n A 1 133 PHE 133 160 160 PHE PHE A . n A 1 134 ARG 134 161 161 ARG ARG A . n A 1 135 LEU 135 162 162 LEU LEU A . n A 1 136 ASP 136 163 163 ASP ASP A . n A 1 137 ARG 137 164 164 ARG ARG A . n A 1 138 THR 138 165 165 THR THR A . n A 1 139 GLU 139 166 166 GLU GLU A . n A 1 140 PRO 140 167 167 PRO PRO A . n A 1 141 THR 141 168 168 THR THR A . n A 1 142 LEU 142 169 169 LEU LEU A . n A 1 143 ASN 143 170 170 ASN ASN A . n A 1 144 THR 144 171 171 THR THR A . n A 1 145 ALA 145 172 172 ALA ALA A . n A 1 146 ILE 146 173 173 ILE ILE A . n A 1 147 PRO 147 174 174 PRO PRO A . n A 1 148 GLY 148 175 175 GLY GLY A . n A 1 149 ASP 149 176 176 ASP ASP A . n A 1 150 PRO 150 177 177 PRO PRO A . n A 1 151 ARG 151 178 178 ARG ARG A . n A 1 152 ASP 152 179 179 ASP ASP A . n A 1 153 THR 153 180 180 THR THR A . n A 1 154 THR 154 181 181 THR THR A . n A 1 155 THR 155 182 182 THR THR A . n A 1 156 PRO 156 183 183 PRO PRO A . n A 1 157 LEU 157 184 184 LEU LEU A . n A 1 158 ALA 158 185 185 ALA ALA A . n A 1 159 MET 159 186 186 MET MET A . n A 1 160 ALA 160 187 187 ALA ALA A . n A 1 161 GLN 161 188 188 GLN GLN A . n A 1 162 THR 162 189 189 THR THR A . n A 1 163 LEU 163 190 190 LEU LEU A . n A 1 164 LYS 164 191 191 LYS LYS A . n A 1 165 ASN 165 192 192 ASN ASN A . n A 1 166 LEU 166 193 193 LEU LEU A . n A 1 167 THR 167 194 194 THR THR A . n A 1 168 LEU 168 195 195 LEU LEU A . n A 1 169 GLY 169 196 196 GLY GLY A . n A 1 170 LYS 170 197 197 LYS LYS A . n A 1 171 ALA 171 198 198 ALA ALA A . n A 1 172 LEU 172 199 199 LEU LEU A . n A 1 173 ALA 173 200 200 ALA ALA A . n A 1 174 GLU 174 201 201 GLU GLU A . n A 1 175 THR 175 202 202 THR THR A . n A 1 176 GLN 176 203 203 GLN GLN A . n A 1 177 ARG 177 204 204 ARG ARG A . n A 1 178 ALA 178 205 205 ALA ALA A . n A 1 179 GLN 179 206 206 GLN GLN A . n A 1 180 LEU 180 207 207 LEU LEU A . n A 1 181 VAL 181 208 208 VAL VAL A . n A 1 182 THR 182 209 209 THR THR A . n A 1 183 TRP 183 210 210 TRP TRP A . n A 1 184 LEU 184 211 211 LEU LEU A . n A 1 185 LYS 185 212 212 LYS LYS A . n A 1 186 GLY 186 213 213 GLY GLY A . n A 1 187 ASN 187 214 214 ASN ASN A . n A 1 188 THR 188 215 215 THR THR A . n A 1 189 THR 189 216 216 THR THR A . n A 1 190 GLY 190 217 217 GLY GLY A . n A 1 191 SER 191 218 218 SER SER A . n A 1 192 ALA 192 219 219 ALA ALA A . n A 1 193 SER 193 220 220 SER SER A . n A 1 194 ILE 194 221 221 ILE ILE A . n A 1 195 ARG 195 222 222 ARG ARG A . n A 1 196 ALA 196 223 223 ALA ALA A . n A 1 197 GLY 197 224 224 GLY GLY A . n A 1 198 LEU 198 225 225 LEU LEU A . n A 1 199 PRO 199 226 226 PRO PRO A . n A 1 200 LYS 200 227 227 LYS LYS A . n A 1 201 SER 201 228 228 SER SER A . n A 1 202 TRP 202 229 229 TRP TRP A . n A 1 203 VAL 203 230 230 VAL VAL A . n A 1 204 VAL 204 231 231 VAL VAL A . n A 1 205 GLY 205 232 232 GLY GLY A . n A 1 206 ASP 206 233 233 ASP ASP A . n A 1 207 LYS 207 234 234 LYS LYS A . n A 1 208 THR 208 235 235 THR THR A . n A 1 209 GLY 209 236 236 GLY GLY A . n A 1 210 SER 210 237 237 SER SER A . n A 1 211 GLY 211 238 238 GLY GLY A . n A 1 212 ASP 212 240 240 ASP ASP A . n A 1 213 TYR 213 241 241 TYR TYR A . n A 1 214 GLY 214 242 242 GLY GLY A . n A 1 215 THR 215 243 243 THR THR A . n A 1 216 THR 216 244 244 THR THR A . n A 1 217 ASN 217 245 245 ASN ASN A . n A 1 218 ASP 218 246 246 ASP ASP A . n A 1 219 ILE 219 247 247 ILE ILE A . n A 1 220 ALA 220 248 248 ALA ALA A . n A 1 221 VAL 221 249 249 VAL VAL A . n A 1 222 ILE 222 250 250 ILE ILE A . n A 1 223 TRP 223 251 251 TRP TRP A . n A 1 224 PRO 224 252 252 PRO PRO A . n A 1 225 GLU 225 254 254 GLU GLU A . n A 1 226 ASN 226 255 255 ASN ASN A . n A 1 227 HIS 227 256 256 HIS HIS A . n A 1 228 ALA 228 257 257 ALA ALA A . n A 1 229 PRO 229 258 258 PRO PRO A . n A 1 230 LEU 230 259 259 LEU LEU A . n A 1 231 VAL 231 260 260 VAL VAL A . n A 1 232 LEU 232 261 261 LEU LEU A . n A 1 233 VAL 233 262 262 VAL VAL A . n A 1 234 THR 234 263 263 THR THR A . n A 1 235 TYR 235 264 264 TYR TYR A . n A 1 236 PHE 236 265 265 PHE PHE A . n A 1 237 THR 237 266 266 THR THR A . n A 1 238 GLN 238 267 267 GLN GLN A . n A 1 239 PRO 239 268 268 PRO PRO A . n A 1 240 GLU 240 269 269 GLU GLU A . n A 1 241 GLN 241 270 270 GLN GLN A . n A 1 242 LYS 242 271 271 LYS LYS A . n A 1 243 ALA 243 272 272 ALA ALA A . n A 1 244 GLU 244 273 273 GLU GLU A . n A 1 245 ASN 245 274 274 ASN ASN A . n A 1 246 ARG 246 275 275 ARG ARG A . n A 1 247 ASN 247 276 276 ASN ASN A . n A 1 248 ASP 248 277 277 ASP ASP A . n A 1 249 ILE 249 278 278 ILE ILE A . n A 1 250 LEU 250 279 279 LEU LEU A . n A 1 251 ALA 251 280 280 ALA ALA A . n A 1 252 ALA 252 281 281 ALA ALA A . n A 1 253 ALA 253 282 282 ALA ALA A . n A 1 254 ALA 254 283 283 ALA ALA A . n A 1 255 LYS 255 284 284 LYS LYS A . n A 1 256 ILE 256 285 285 ILE ILE A . n A 1 257 VAL 257 286 286 VAL VAL A . n A 1 258 THR 258 287 287 THR THR A . n A 1 259 HIS 259 288 288 HIS HIS A . n A 1 260 GLY 260 289 289 GLY GLY A . n A 1 261 PHE 261 290 290 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BZB 1 300 300 BZB BZB A . C 3 DOD 1 1001 1001 DOD DOD A . C 3 DOD 2 1002 1002 DOD DOD A . C 3 DOD 3 1003 1003 DOD DOD A . C 3 DOD 4 1005 1005 DOD DOD A . C 3 DOD 5 1006 1006 DOD DOD A . C 3 DOD 6 1007 1007 DOD DOD A . C 3 DOD 7 1008 1008 DOD DOD A . C 3 DOD 8 1009 1009 DOD DOD A . C 3 DOD 9 1010 1010 DOD DOD A . C 3 DOD 10 1011 1011 DOD DOD A . C 3 DOD 11 1012 1012 DOD DOD A . C 3 DOD 12 1013 1013 DOD DOD A . C 3 DOD 13 1014 1014 DOD DOD A . C 3 DOD 14 1015 1015 DOD DOD A . C 3 DOD 15 1016 1016 DOD DOD A . C 3 DOD 16 1017 1017 DOD DOD A . C 3 DOD 17 1019 1019 DOD DOD A . C 3 DOD 18 1020 1020 DOD DOD A . C 3 DOD 19 1021 1021 DOD DOD A . C 3 DOD 20 1022 1022 DOD DOD A . C 3 DOD 21 1023 1023 DOD DOD A . C 3 DOD 22 1025 1025 DOD DOD A . C 3 DOD 23 1027 1027 DOD DOD A . C 3 DOD 24 1028 1028 DOD DOD A . C 3 DOD 25 1029 1029 DOD DOD A . C 3 DOD 26 1031 1031 DOD DOD A . C 3 DOD 27 1032 1032 DOD DOD A . C 3 DOD 28 1033 1033 DOD DOD A . C 3 DOD 29 1034 1034 DOD DOD A . C 3 DOD 30 1035 1035 DOD DOD A . C 3 DOD 31 1036 1036 DOD DOD A . C 3 DOD 32 1037 1037 DOD DOD A . C 3 DOD 33 1038 1038 DOD DOD A . C 3 DOD 34 1039 1039 DOD DOD A . C 3 DOD 35 1040 1040 DOD DOD A . C 3 DOD 36 1041 1041 DOD DOD A . C 3 DOD 37 1043 1043 DOD DOD A . C 3 DOD 38 1044 1044 DOD DOD A . C 3 DOD 39 1046 1046 DOD DOD A . C 3 DOD 40 1047 1047 DOD DOD A . C 3 DOD 41 1048 1048 DOD DOD A . C 3 DOD 42 1049 1049 DOD DOD A . C 3 DOD 43 1050 1050 DOD DOD A . C 3 DOD 44 1051 1051 DOD DOD A . C 3 DOD 45 1053 1053 DOD DOD A . C 3 DOD 46 1054 1054 DOD DOD A . C 3 DOD 47 1055 1055 DOD DOD A . C 3 DOD 48 1056 1056 DOD DOD A . C 3 DOD 49 1057 1057 DOD DOD A . C 3 DOD 50 1058 1058 DOD DOD A . C 3 DOD 51 1060 1060 DOD DOD A . C 3 DOD 52 1061 1061 DOD DOD A . C 3 DOD 53 1062 1062 DOD DOD A . C 3 DOD 54 1063 1063 DOD DOD A . C 3 DOD 55 1064 1064 DOD DOD A . C 3 DOD 56 1065 1065 DOD DOD A . C 3 DOD 57 1066 1066 DOD DOD A . C 3 DOD 58 1067 1067 DOD DOD A . C 3 DOD 59 1068 1068 DOD DOD A . C 3 DOD 60 1069 1069 DOD DOD A . C 3 DOD 61 1070 1070 DOD DOD A . C 3 DOD 62 1071 1071 DOD DOD A . C 3 DOD 63 1072 1072 DOD DOD A . C 3 DOD 64 1073 1073 DOD DOD A . C 3 DOD 65 1074 1074 DOD DOD A . C 3 DOD 66 1075 1075 DOD DOD A . C 3 DOD 67 1076 1076 DOD DOD A . C 3 DOD 68 1077 1077 DOD DOD A . C 3 DOD 69 1078 1078 DOD DOD A . C 3 DOD 70 1079 1079 DOD DOD A . C 3 DOD 71 1082 1082 DOD DOD A . C 3 DOD 72 1084 1084 DOD DOD A . C 3 DOD 73 1085 1085 DOD DOD A . C 3 DOD 74 1086 1086 DOD DOD A . C 3 DOD 75 1087 1087 DOD DOD A . C 3 DOD 76 1089 1089 DOD DOD A . C 3 DOD 77 1091 1091 DOD DOD A . C 3 DOD 78 1092 1092 DOD DOD A . C 3 DOD 79 1093 1093 DOD DOD A . C 3 DOD 80 1094 1094 DOD DOD A . C 3 DOD 81 1095 1095 DOD DOD A . C 3 DOD 82 1096 1096 DOD DOD A . C 3 DOD 83 1097 1097 DOD DOD A . C 3 DOD 84 1098 1098 DOD DOD A . C 3 DOD 85 1100 1100 DOD DOD A . C 3 DOD 86 1102 1102 DOD DOD A . C 3 DOD 87 1103 1103 DOD DOD A . C 3 DOD 88 1105 1105 DOD DOD A . C 3 DOD 89 1106 1106 DOD DOD A . C 3 DOD 90 1107 1107 DOD DOD A . C 3 DOD 91 1108 1108 DOD DOD A . C 3 DOD 92 1109 1109 DOD DOD A . C 3 DOD 93 1110 1110 DOD DOD A . C 3 DOD 94 1111 1111 DOD DOD A . C 3 DOD 95 1113 1113 DOD DOD A . C 3 DOD 96 1114 1114 DOD DOD A . C 3 DOD 97 1115 1115 DOD DOD A . C 3 DOD 98 1118 1118 DOD DOD A . C 3 DOD 99 1121 1121 DOD DOD A . C 3 DOD 100 1124 1124 DOD DOD A . C 3 DOD 101 1125 1125 DOD DOD A . C 3 DOD 102 1126 1126 DOD DOD A . C 3 DOD 103 1127 1127 DOD DOD A . C 3 DOD 104 1128 1128 DOD DOD A . C 3 DOD 105 1129 1129 DOD DOD A . C 3 DOD 106 1130 1130 DOD DOD A . C 3 DOD 107 1131 1131 DOD DOD A . C 3 DOD 108 1133 1133 DOD DOD A . C 3 DOD 109 1134 1134 DOD DOD A . C 3 DOD 110 1135 1135 DOD DOD A . C 3 DOD 111 1136 1136 DOD DOD A . C 3 DOD 112 1139 1139 DOD DOD A . C 3 DOD 113 1140 1140 DOD DOD A . C 3 DOD 114 1142 1142 DOD DOD A . C 3 DOD 115 1144 1144 DOD DOD A . C 3 DOD 116 1145 1145 DOD DOD A . C 3 DOD 117 1146 1146 DOD DOD A . C 3 DOD 118 1147 1147 DOD DOD A . C 3 DOD 119 1149 1149 DOD DOD A . C 3 DOD 120 1151 1151 DOD DOD A . C 3 DOD 121 1154 1154 DOD DOD A . C 3 DOD 122 1157 1157 DOD DOD A . C 3 DOD 123 1158 1158 DOD DOD A . C 3 DOD 124 1159 1159 DOD DOD A . C 3 DOD 125 1160 1160 DOD DOD A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id DOD _pdbx_struct_special_symmetry.auth_seq_id 1017 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id DOD _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-09 2 'Structure model' 1 1 2017-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? # _pdbx_entry_details.entry_id 4C3Q _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;BENZO[B]THIOPHENE-2-BORONIC ACID (BZB): BORON IS ENRICHED 11B ISOTOPE ; _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 D2 A DOD 1108 ? ? D1 A DOD 1126 ? ? 1.37 2 1 O A DOD 1108 ? ? O A DOD 1126 ? ? 1.51 3 1 O A DOD 1041 ? ? D2 A DOD 1128 ? ? 1.54 4 1 O A DOD 1108 ? ? D1 A DOD 1126 ? ? 1.58 5 1 OG A SER 70 ? ? O2 A BZB 300 ? ? 1.99 6 1 O A DOD 1041 ? ? O A DOD 1128 ? ? 2.06 7 1 OD1 A ASN 106 ? ? OG1 A THR 133 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 166 ? ? OE1 A GLU 166 ? ? 1.185 1.252 -0.067 0.011 N 2 1 CD A GLU 166 ? ? OE2 A GLU 166 ? ? 1.327 1.252 0.075 0.011 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 69 ? ? 55.95 -132.62 2 1 VAL A 103 ? ? -80.57 -146.38 3 1 TYR A 105 ? ? 62.21 93.23 4 1 HIS A 112 ? ? -140.43 15.12 5 1 SER A 220 ? ? -97.78 -127.43 6 1 HIS A 288 ? ? -68.58 91.97 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A DOD 1097 ? 5.81 . 2 1 O ? A DOD 1098 ? 7.15 . 3 1 O ? A DOD 1126 ? 5.93 . 4 1 O ? A DOD 1144 ? 6.56 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 27 ? CG ? A ASN 1 CG 2 1 Y 1 A ASN 27 ? OD1 ? A ASN 1 OD1 3 1 Y 1 A ASN 27 ? ND2 ? A ASN 1 ND2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BENZO[B]THIOPHENE-2-BORONIC ACID' BZB 3 water DOD # _pdbx_reflns_twin.domain_id 1 _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 _pdbx_reflns_twin.type ? _pdbx_reflns_twin.operator -h,-k,l _pdbx_reflns_twin.fraction 0.100 #