data_4C4M # _entry.id 4C4M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4C4M PDBE EBI-58034 WWPDB D_1290058034 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4C4N _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE SONIC HEDGEHOG-HEPARIN COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4C4M _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-09-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Whalen, D.M.' 1 'Malinauskas, T.' 2 'Gilbert, R.J.C.' 3 'Siebold, C.' 4 # _citation.id primary _citation.title 'Structural Insights Into Proteoglycan-Shaped Hedgehog Signaling.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 16420 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24062467 _citation.pdbx_database_id_DOI 10.1073/PNAS.1310097110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Whalen, D.M.' 1 ? primary 'Malinauskas, T.' 2 ? primary 'Gilbert, R.J.C.' 3 ? primary 'Siebold, C.' 4 ? # _cell.entry_id 4C4M _cell.length_a 40.350 _cell.length_b 55.660 _cell.length_c 71.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C4M _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SONIC HEDGEHOG PROTEIN' 18768.016 1 ? ? 'N-TEMINAL SIGNALLING DOMAIN, RESIDUES 40-195' ? 2 branched man ;beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose ; 936.774 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 water nat water 18.015 129 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SHH, HHG-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MALTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQ WPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKHH HHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MALTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQ WPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKHH HHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LEU n 1 4 THR n 1 5 PRO n 1 6 LEU n 1 7 ALA n 1 8 TYR n 1 9 LYS n 1 10 GLN n 1 11 PHE n 1 12 ILE n 1 13 PRO n 1 14 ASN n 1 15 VAL n 1 16 ALA n 1 17 GLU n 1 18 LYS n 1 19 THR n 1 20 LEU n 1 21 GLY n 1 22 ALA n 1 23 SER n 1 24 GLY n 1 25 ARG n 1 26 TYR n 1 27 GLU n 1 28 GLY n 1 29 LYS n 1 30 ILE n 1 31 THR n 1 32 ARG n 1 33 ASN n 1 34 SER n 1 35 GLU n 1 36 ARG n 1 37 PHE n 1 38 LYS n 1 39 GLU n 1 40 LEU n 1 41 THR n 1 42 PRO n 1 43 ASN n 1 44 TYR n 1 45 ASN n 1 46 PRO n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 PHE n 1 51 LYS n 1 52 ASP n 1 53 GLU n 1 54 GLU n 1 55 ASN n 1 56 THR n 1 57 GLY n 1 58 ALA n 1 59 ASP n 1 60 ARG n 1 61 LEU n 1 62 MET n 1 63 THR n 1 64 GLN n 1 65 ARG n 1 66 CYS n 1 67 LYS n 1 68 ASP n 1 69 LYS n 1 70 LEU n 1 71 ASN n 1 72 ALA n 1 73 LEU n 1 74 ALA n 1 75 ILE n 1 76 SER n 1 77 VAL n 1 78 MET n 1 79 ASN n 1 80 GLN n 1 81 TRP n 1 82 PRO n 1 83 GLY n 1 84 VAL n 1 85 LYS n 1 86 LEU n 1 87 ARG n 1 88 VAL n 1 89 THR n 1 90 GLU n 1 91 GLY n 1 92 TRP n 1 93 ASP n 1 94 GLU n 1 95 ASP n 1 96 GLY n 1 97 HIS n 1 98 HIS n 1 99 SER n 1 100 GLU n 1 101 GLU n 1 102 SER n 1 103 LEU n 1 104 HIS n 1 105 TYR n 1 106 GLU n 1 107 GLY n 1 108 ARG n 1 109 ALA n 1 110 VAL n 1 111 ASP n 1 112 ILE n 1 113 THR n 1 114 THR n 1 115 SER n 1 116 ASP n 1 117 ARG n 1 118 ASP n 1 119 ARG n 1 120 SER n 1 121 LYS n 1 122 TYR n 1 123 GLY n 1 124 MET n 1 125 LEU n 1 126 ALA n 1 127 ARG n 1 128 LEU n 1 129 ALA n 1 130 VAL n 1 131 GLU n 1 132 ALA n 1 133 GLY n 1 134 PHE n 1 135 ASP n 1 136 TRP n 1 137 VAL n 1 138 TYR n 1 139 TYR n 1 140 GLU n 1 141 SER n 1 142 LYS n 1 143 ALA n 1 144 HIS n 1 145 ILE n 1 146 HIS n 1 147 CYS n 1 148 SER n 1 149 VAL n 1 150 LYS n 1 151 ALA n 1 152 GLU n 1 153 ASN n 1 154 SER n 1 155 VAL n 1 156 ALA n 1 157 ALA n 1 158 LYS n 1 159 HIS n 1 160 HIS n 1 161 HIS n 1 162 HIS n 1 163 HIS n 1 164 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA PLYSS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET22B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SHH_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q62226 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4C4M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q62226 _struct_ref_seq.db_align_beg 40 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 195 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 40 _struct_ref_seq.pdbx_auth_seq_align_end 195 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4C4M MET A 1 ? UNP Q62226 ? ? 'expression tag' 38 1 1 4C4M ALA A 2 ? UNP Q62226 ? ? 'expression tag' 39 2 1 4C4M HIS A 159 ? UNP Q62226 ? ? 'expression tag' 196 3 1 4C4M HIS A 160 ? UNP Q62226 ? ? 'expression tag' 197 4 1 4C4M HIS A 161 ? UNP Q62226 ? ? 'expression tag' 198 5 1 4C4M HIS A 162 ? UNP Q62226 ? ? 'expression tag' 199 6 1 4C4M HIS A 163 ? UNP Q62226 ? ? 'expression tag' 200 7 1 4C4M HIS A 164 ? UNP Q62226 ? ? 'expression tag' 201 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASG 'D-saccharide, beta linking' n 2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose ? 'C8 H15 N O9 S' 301.271 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BDP 'D-saccharide, beta linking' . 'beta-D-glucopyranuronic acid' 'D-GLUCURONIC ACID' 'C6 H10 O7' 194.139 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4C4M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.17 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% (W/V) PEG 3350, 100 MM HEPES PH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2012-07-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97630 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.97630 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4C4M _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.80 _reflns.d_resolution_high 1.74 _reflns.number_obs 17037 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.30 _reflns.B_iso_Wilson_estimate 17.84 _reflns.pdbx_redundancy 6.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.74 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.70 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 7.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4C4M _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16992 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.828 _refine.ls_d_res_high 1.740 _refine.ls_percent_reflns_obs 99.88 _refine.ls_R_factor_obs 0.1618 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1602 _refine.ls_R_factor_R_free 0.1934 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 861 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.pdbx_overall_phase_error 18.04 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1424 _refine_hist.d_res_high 1.740 _refine_hist.d_res_low 43.828 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1320 'X-RAY DIFFRACTION' ? f_angle_d 1.118 ? ? 1792 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.064 ? ? 512 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 196 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 232 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7400 1.8490 2608 0.2005 100.00 0.2778 . . 150 . . 'X-RAY DIFFRACTION' . 1.8490 1.9918 2647 0.1758 100.00 0.2186 . . 148 . . 'X-RAY DIFFRACTION' . 1.9918 2.1922 2665 0.1562 100.00 0.1956 . . 129 . . 'X-RAY DIFFRACTION' . 2.1922 2.5094 2665 0.1574 100.00 0.1831 . . 165 . . 'X-RAY DIFFRACTION' . 2.5094 3.1615 2699 0.1748 100.00 0.2025 . . 135 . . 'X-RAY DIFFRACTION' . 3.1615 43.8415 2847 0.1447 100.00 0.1709 . . 134 . . # _struct.entry_id 4C4M _struct.title 'Crystal structure of the Sonic Hedgehog-chondroitin-4-sulphate complex' _struct.pdbx_descriptor 'SONIC HEDGEHOG PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4C4M _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, HEDGEHOG SIGNALLING, MORPHOGENS, HEPARAN SULPHATE PROTEOGLYCANS, GLYCOSAMINOGLYCANS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 36 ? LEU A 40 ? ARG A 73 LEU A 77 5 ? 5 HELX_P HELX_P2 2 GLY A 57 ? ASP A 59 ? GLY A 94 ASP A 96 5 ? 3 HELX_P HELX_P3 3 THR A 63 ? TRP A 81 ? THR A 100 TRP A 118 1 ? 19 HELX_P HELX_P4 4 SER A 102 ? GLY A 107 ? SER A 139 GLY A 144 5 ? 6 HELX_P HELX_P5 5 ASP A 118 ? SER A 120 ? ASP A 155 SER A 157 5 ? 3 HELX_P HELX_P6 6 LYS A 121 ? ALA A 132 ? LYS A 158 ALA A 169 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ASG . O3 ? ? ? 1_555 B BDP . C1 ? ? B ASG 1 B BDP 2 1_555 ? ? ? ? ? ? ? 1.441 sing ? covale2 covale one ? B ASG . O1 ? ? ? 1_555 B BDP . C4 ? ? B ASG 1 B BDP 4 4_555 ? ? ? ? ? ? ? 2.276 ? ? covale3 covale one ? B ASG . O1 ? ? ? 4_455 B BDP . C4 ? ? B ASG 1 B BDP 4 1_555 ? ? ? ? ? ? ? 2.276 ? ? covale4 covale both ? B BDP . O4 ? ? ? 1_555 B ASG . C1 ? ? B BDP 2 B ASG 3 1_555 ? ? ? ? ? ? ? 1.438 sing ? covale5 covale both ? B ASG . O3 ? ? ? 1_555 B BDP . C1 ? ? B ASG 3 B BDP 4 1_555 ? ? ? ? ? ? ? 1.435 sing ? metalc1 metalc ? ? A GLU 53 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 90 A CA 1195 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc2 metalc ? ? A GLU 53 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 90 A CA 1195 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc3 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 D CA . CA ? ? A GLU 91 A CA 1194 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc4 metalc ? ? A GLU 54 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 91 A CA 1195 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc5 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 91 A CA 1195 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc6 metalc ? ? A ASP 59 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 96 A CA 1195 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc7 metalc ? ? A ASP 59 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 96 A CA 1195 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc8 metalc ? ? A THR 89 O ? ? ? 1_555 E CA . CA ? ? A THR 126 A CA 1195 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc9 metalc ? ? A GLU 90 OE2 ? ? ? 1_555 D CA . CA ? ? A GLU 127 A CA 1194 1_555 ? ? ? ? ? ? ? 2.684 ? ? metalc10 metalc ? ? A GLU 90 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 127 A CA 1194 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc11 metalc ? ? A GLU 90 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 127 A CA 1195 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc12 metalc ? ? A ASP 93 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 130 A CA 1194 1_555 ? ? ? ? ? ? ? 2.382 ? ? metalc13 metalc ? ? A ASP 95 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 132 A CA 1194 1_555 ? ? ? ? ? ? ? 2.676 ? ? metalc14 metalc ? ? A HIS 104 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 141 A ZN 1193 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc15 metalc ? ? A ASP 111 OD1 ? ? ? 1_555 C ZN . ZN ? ? A ASP 148 A ZN 1193 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc16 metalc ? ? A HIS 146 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 183 A ZN 1193 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc17 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 1193 A HOH 2106 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc18 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 1194 A HOH 2076 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 1194 A HOH 2077 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 1194 A HOH 2103 1_555 ? ? ? ? ? ? ? 2.943 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 49 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 50 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 11 ? ILE A 12 ? PHE A 48 ILE A 49 AA 2 TRP A 136 ? SER A 141 ? TRP A 173 SER A 178 AA 3 HIS A 144 ? SER A 148 ? HIS A 181 SER A 185 AA 4 ALA A 109 ? THR A 114 ? ALA A 146 THR A 151 AA 5 LEU A 86 ? GLU A 90 ? LEU A 123 GLU A 127 AA 6 ILE A 48 ? PHE A 50 ? ILE A 85 PHE A 87 AB 1 THR A 41 ? PRO A 42 ? THR A 78 PRO A 79 AB 2 LEU A 61 ? MET A 62 ? LEU A 98 MET A 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 12 ? N ILE A 49 O VAL A 137 ? O VAL A 174 AA 2 3 N SER A 141 ? N SER A 178 O HIS A 144 ? O HIS A 181 AA 3 4 N CYS A 147 ? N CYS A 184 O VAL A 110 ? O VAL A 147 AA 4 5 N THR A 113 ? N THR A 150 O ARG A 87 ? O ARG A 124 AA 5 6 N VAL A 88 ? N VAL A 125 O ILE A 49 ? O ILE A 86 AB 1 2 N THR A 41 ? N THR A 78 O MET A 62 ? O MET A 99 # _database_PDB_matrix.entry_id 4C4M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4C4M _atom_sites.fract_transf_matrix[1][1] 0.024783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017966 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014065 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 38 ? ? ? A . n A 1 2 ALA 2 39 ? ? ? A . n A 1 3 LEU 3 40 40 LEU LEU A . n A 1 4 THR 4 41 41 THR THR A . n A 1 5 PRO 5 42 42 PRO PRO A . n A 1 6 LEU 6 43 43 LEU LEU A . n A 1 7 ALA 7 44 44 ALA ALA A . n A 1 8 TYR 8 45 45 TYR TYR A . n A 1 9 LYS 9 46 46 LYS LYS A . n A 1 10 GLN 10 47 47 GLN GLN A . n A 1 11 PHE 11 48 48 PHE PHE A . n A 1 12 ILE 12 49 49 ILE ILE A . n A 1 13 PRO 13 50 50 PRO PRO A . n A 1 14 ASN 14 51 51 ASN ASN A . n A 1 15 VAL 15 52 52 VAL VAL A . n A 1 16 ALA 16 53 53 ALA ALA A . n A 1 17 GLU 17 54 54 GLU GLU A . n A 1 18 LYS 18 55 55 LYS LYS A . n A 1 19 THR 19 56 56 THR THR A . n A 1 20 LEU 20 57 57 LEU LEU A . n A 1 21 GLY 21 58 58 GLY GLY A . n A 1 22 ALA 22 59 59 ALA ALA A . n A 1 23 SER 23 60 60 SER SER A . n A 1 24 GLY 24 61 61 GLY GLY A . n A 1 25 ARG 25 62 62 ARG ARG A . n A 1 26 TYR 26 63 63 TYR TYR A . n A 1 27 GLU 27 64 64 GLU GLU A . n A 1 28 GLY 28 65 65 GLY GLY A . n A 1 29 LYS 29 66 66 LYS LYS A . n A 1 30 ILE 30 67 67 ILE ILE A . n A 1 31 THR 31 68 68 THR THR A . n A 1 32 ARG 32 69 69 ARG ARG A . n A 1 33 ASN 33 70 70 ASN ASN A . n A 1 34 SER 34 71 71 SER SER A . n A 1 35 GLU 35 72 72 GLU GLU A . n A 1 36 ARG 36 73 73 ARG ARG A . n A 1 37 PHE 37 74 74 PHE PHE A . n A 1 38 LYS 38 75 75 LYS LYS A . n A 1 39 GLU 39 76 76 GLU GLU A . n A 1 40 LEU 40 77 77 LEU LEU A . n A 1 41 THR 41 78 78 THR THR A . n A 1 42 PRO 42 79 79 PRO PRO A . n A 1 43 ASN 43 80 80 ASN ASN A . n A 1 44 TYR 44 81 81 TYR TYR A . n A 1 45 ASN 45 82 82 ASN ASN A . n A 1 46 PRO 46 83 83 PRO PRO A . n A 1 47 ASP 47 84 84 ASP ASP A . n A 1 48 ILE 48 85 85 ILE ILE A . n A 1 49 ILE 49 86 86 ILE ILE A . n A 1 50 PHE 50 87 87 PHE PHE A . n A 1 51 LYS 51 88 88 LYS LYS A . n A 1 52 ASP 52 89 89 ASP ASP A . n A 1 53 GLU 53 90 90 GLU GLU A . n A 1 54 GLU 54 91 91 GLU GLU A . n A 1 55 ASN 55 92 92 ASN ASN A . n A 1 56 THR 56 93 93 THR THR A . n A 1 57 GLY 57 94 94 GLY GLY A . n A 1 58 ALA 58 95 95 ALA ALA A . n A 1 59 ASP 59 96 96 ASP ASP A . n A 1 60 ARG 60 97 97 ARG ARG A . n A 1 61 LEU 61 98 98 LEU LEU A . n A 1 62 MET 62 99 99 MET MET A . n A 1 63 THR 63 100 100 THR THR A . n A 1 64 GLN 64 101 101 GLN GLN A . n A 1 65 ARG 65 102 102 ARG ARG A . n A 1 66 CYS 66 103 103 CYS CYS A . n A 1 67 LYS 67 104 104 LYS LYS A . n A 1 68 ASP 68 105 105 ASP ASP A . n A 1 69 LYS 69 106 106 LYS LYS A . n A 1 70 LEU 70 107 107 LEU LEU A . n A 1 71 ASN 71 108 108 ASN ASN A . n A 1 72 ALA 72 109 109 ALA ALA A . n A 1 73 LEU 73 110 110 LEU LEU A . n A 1 74 ALA 74 111 111 ALA ALA A . n A 1 75 ILE 75 112 112 ILE ILE A . n A 1 76 SER 76 113 113 SER SER A . n A 1 77 VAL 77 114 114 VAL VAL A . n A 1 78 MET 78 115 115 MET MET A . n A 1 79 ASN 79 116 116 ASN ASN A . n A 1 80 GLN 80 117 117 GLN GLN A . n A 1 81 TRP 81 118 118 TRP TRP A . n A 1 82 PRO 82 119 119 PRO PRO A . n A 1 83 GLY 83 120 120 GLY GLY A . n A 1 84 VAL 84 121 121 VAL VAL A . n A 1 85 LYS 85 122 122 LYS LYS A . n A 1 86 LEU 86 123 123 LEU LEU A . n A 1 87 ARG 87 124 124 ARG ARG A . n A 1 88 VAL 88 125 125 VAL VAL A . n A 1 89 THR 89 126 126 THR THR A . n A 1 90 GLU 90 127 127 GLU GLU A . n A 1 91 GLY 91 128 128 GLY GLY A . n A 1 92 TRP 92 129 129 TRP TRP A . n A 1 93 ASP 93 130 130 ASP ASP A . n A 1 94 GLU 94 131 131 GLU GLU A . n A 1 95 ASP 95 132 132 ASP ASP A . n A 1 96 GLY 96 133 133 GLY GLY A . n A 1 97 HIS 97 134 134 HIS HIS A . n A 1 98 HIS 98 135 135 HIS HIS A . n A 1 99 SER 99 136 136 SER SER A . n A 1 100 GLU 100 137 137 GLU GLU A . n A 1 101 GLU 101 138 138 GLU GLU A . n A 1 102 SER 102 139 139 SER SER A . n A 1 103 LEU 103 140 140 LEU LEU A . n A 1 104 HIS 104 141 141 HIS HIS A . n A 1 105 TYR 105 142 142 TYR TYR A . n A 1 106 GLU 106 143 143 GLU GLU A . n A 1 107 GLY 107 144 144 GLY GLY A . n A 1 108 ARG 108 145 145 ARG ARG A . n A 1 109 ALA 109 146 146 ALA ALA A . n A 1 110 VAL 110 147 147 VAL VAL A . n A 1 111 ASP 111 148 148 ASP ASP A . n A 1 112 ILE 112 149 149 ILE ILE A . n A 1 113 THR 113 150 150 THR THR A . n A 1 114 THR 114 151 151 THR THR A . n A 1 115 SER 115 152 152 SER SER A . n A 1 116 ASP 116 153 153 ASP ASP A . n A 1 117 ARG 117 154 154 ARG ARG A . n A 1 118 ASP 118 155 155 ASP ASP A . n A 1 119 ARG 119 156 156 ARG ARG A . n A 1 120 SER 120 157 157 SER SER A . n A 1 121 LYS 121 158 158 LYS LYS A . n A 1 122 TYR 122 159 159 TYR TYR A . n A 1 123 GLY 123 160 160 GLY GLY A . n A 1 124 MET 124 161 161 MET MET A . n A 1 125 LEU 125 162 162 LEU LEU A . n A 1 126 ALA 126 163 163 ALA ALA A . n A 1 127 ARG 127 164 164 ARG ARG A . n A 1 128 LEU 128 165 165 LEU LEU A . n A 1 129 ALA 129 166 166 ALA ALA A . n A 1 130 VAL 130 167 167 VAL VAL A . n A 1 131 GLU 131 168 168 GLU GLU A . n A 1 132 ALA 132 169 169 ALA ALA A . n A 1 133 GLY 133 170 170 GLY GLY A . n A 1 134 PHE 134 171 171 PHE PHE A . n A 1 135 ASP 135 172 172 ASP ASP A . n A 1 136 TRP 136 173 173 TRP TRP A . n A 1 137 VAL 137 174 174 VAL VAL A . n A 1 138 TYR 138 175 175 TYR TYR A . n A 1 139 TYR 139 176 176 TYR TYR A . n A 1 140 GLU 140 177 177 GLU GLU A . n A 1 141 SER 141 178 178 SER SER A . n A 1 142 LYS 142 179 179 LYS LYS A . n A 1 143 ALA 143 180 180 ALA ALA A . n A 1 144 HIS 144 181 181 HIS HIS A . n A 1 145 ILE 145 182 182 ILE ILE A . n A 1 146 HIS 146 183 183 HIS HIS A . n A 1 147 CYS 147 184 184 CYS CYS A . n A 1 148 SER 148 185 185 SER SER A . n A 1 149 VAL 149 186 186 VAL VAL A . n A 1 150 LYS 150 187 187 LYS LYS A . n A 1 151 ALA 151 188 188 ALA ALA A . n A 1 152 GLU 152 189 189 GLU GLU A . n A 1 153 ASN 153 190 190 ASN ASN A . n A 1 154 SER 154 191 191 SER SER A . n A 1 155 VAL 155 192 192 VAL VAL A . n A 1 156 ALA 156 193 193 ALA ALA A . n A 1 157 ALA 157 194 ? ? ? A . n A 1 158 LYS 158 195 ? ? ? A . n A 1 159 HIS 159 196 ? ? ? A . n A 1 160 HIS 160 197 ? ? ? A . n A 1 161 HIS 161 198 ? ? ? A . n A 1 162 HIS 162 199 ? ? ? A . n A 1 163 HIS 163 200 ? ? ? A . n A 1 164 HIS 164 201 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1193 1193 ZN ZN A . D 4 CA 1 1194 1194 CA CA A . E 4 CA 1 1195 1195 CA CA A . F 5 ACT 1 1200 1200 ACT ACT A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2037 2037 HOH HOH A . G 6 HOH 38 2038 2038 HOH HOH A . G 6 HOH 39 2039 2039 HOH HOH A . G 6 HOH 40 2040 2040 HOH HOH A . G 6 HOH 41 2041 2041 HOH HOH A . G 6 HOH 42 2042 2042 HOH HOH A . G 6 HOH 43 2043 2043 HOH HOH A . G 6 HOH 44 2044 2044 HOH HOH A . G 6 HOH 45 2045 2045 HOH HOH A . G 6 HOH 46 2046 2046 HOH HOH A . G 6 HOH 47 2047 2047 HOH HOH A . G 6 HOH 48 2048 2048 HOH HOH A . G 6 HOH 49 2049 2049 HOH HOH A . G 6 HOH 50 2050 2050 HOH HOH A . G 6 HOH 51 2051 2051 HOH HOH A . G 6 HOH 52 2052 2052 HOH HOH A . G 6 HOH 53 2053 2053 HOH HOH A . G 6 HOH 54 2054 2054 HOH HOH A . G 6 HOH 55 2055 2055 HOH HOH A . G 6 HOH 56 2056 2056 HOH HOH A . G 6 HOH 57 2057 2057 HOH HOH A . G 6 HOH 58 2058 2058 HOH HOH A . G 6 HOH 59 2059 2059 HOH HOH A . G 6 HOH 60 2060 2060 HOH HOH A . G 6 HOH 61 2061 2061 HOH HOH A . G 6 HOH 62 2062 2062 HOH HOH A . G 6 HOH 63 2063 2063 HOH HOH A . G 6 HOH 64 2064 2064 HOH HOH A . G 6 HOH 65 2065 2065 HOH HOH A . G 6 HOH 66 2066 2066 HOH HOH A . G 6 HOH 67 2067 2067 HOH HOH A . G 6 HOH 68 2068 2068 HOH HOH A . G 6 HOH 69 2069 2069 HOH HOH A . G 6 HOH 70 2070 2070 HOH HOH A . G 6 HOH 71 2071 2071 HOH HOH A . G 6 HOH 72 2072 2072 HOH HOH A . G 6 HOH 73 2073 2073 HOH HOH A . G 6 HOH 74 2074 2074 HOH HOH A . G 6 HOH 75 2075 2075 HOH HOH A . G 6 HOH 76 2076 2076 HOH HOH A . G 6 HOH 77 2077 2077 HOH HOH A . G 6 HOH 78 2078 2078 HOH HOH A . G 6 HOH 79 2079 2079 HOH HOH A . G 6 HOH 80 2080 2080 HOH HOH A . G 6 HOH 81 2081 2081 HOH HOH A . G 6 HOH 82 2082 2082 HOH HOH A . G 6 HOH 83 2083 2083 HOH HOH A . G 6 HOH 84 2084 2084 HOH HOH A . G 6 HOH 85 2085 2085 HOH HOH A . G 6 HOH 86 2086 2086 HOH HOH A . G 6 HOH 87 2087 2087 HOH HOH A . G 6 HOH 88 2088 2088 HOH HOH A . G 6 HOH 89 2089 2089 HOH HOH A . G 6 HOH 90 2090 2090 HOH HOH A . G 6 HOH 91 2091 2091 HOH HOH A . G 6 HOH 92 2092 2092 HOH HOH A . G 6 HOH 93 2093 2093 HOH HOH A . G 6 HOH 94 2094 2094 HOH HOH A . G 6 HOH 95 2095 2095 HOH HOH A . G 6 HOH 96 2096 2096 HOH HOH A . G 6 HOH 97 2097 2097 HOH HOH A . G 6 HOH 98 2098 2098 HOH HOH A . G 6 HOH 99 2099 2099 HOH HOH A . G 6 HOH 100 2100 2100 HOH HOH A . G 6 HOH 101 2101 2101 HOH HOH A . G 6 HOH 102 2102 2102 HOH HOH A . G 6 HOH 103 2103 2103 HOH HOH A . G 6 HOH 104 2104 2104 HOH HOH A . G 6 HOH 105 2105 2105 HOH HOH A . G 6 HOH 106 2106 2106 HOH HOH A . G 6 HOH 107 2107 2107 HOH HOH A . G 6 HOH 108 2108 2108 HOH HOH A . G 6 HOH 109 2109 2109 HOH HOH A . G 6 HOH 110 2110 2110 HOH HOH A . G 6 HOH 111 2111 2111 HOH HOH A . G 6 HOH 112 2112 2112 HOH HOH A . G 6 HOH 113 2113 2113 HOH HOH A . G 6 HOH 114 2114 2114 HOH HOH A . G 6 HOH 115 2115 2115 HOH HOH A . G 6 HOH 116 2116 2116 HOH HOH A . G 6 HOH 117 2117 2117 HOH HOH A . G 6 HOH 118 2118 2118 HOH HOH A . G 6 HOH 119 2119 2119 HOH HOH A . G 6 HOH 120 2120 2120 HOH HOH A . G 6 HOH 121 2121 2121 HOH HOH A . G 6 HOH 122 2122 2122 HOH HOH A . G 6 HOH 123 2123 2123 HOH HOH A . G 6 HOH 124 2124 2124 HOH HOH A . G 6 HOH 125 2125 2125 HOH HOH A . G 6 HOH 126 2126 2126 HOH HOH A . G 6 HOH 127 2127 2127 HOH HOH A . G 6 HOH 128 2128 2128 HOH HOH A . G 6 HOH 129 2129 2129 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 51.6 ? 2 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 81.1 ? 3 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 75.2 ? 4 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 75.4 ? 5 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 108.4 ? 6 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 49.4 ? 7 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 163.0 ? 8 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 136.9 ? 9 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 87.5 ? 10 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 87.6 ? 11 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 136.3 ? 12 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 85.3 ? 13 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 80.9 ? 14 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 119.0 ? 15 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 52.7 ? 16 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 105.3 ? 17 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 93.1 ? 18 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 159.3 ? 19 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 151.0 ? 20 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 89.8 ? 21 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 O ? A THR 89 ? A THR 126 ? 1_555 81.1 ? 22 OE2 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 88.0 ? 23 OE1 ? A GLU 53 ? A GLU 90 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 137.0 ? 24 OE1 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 117.2 ? 25 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 67.9 ? 26 OD1 ? A ASP 59 ? A ASP 96 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 86.1 ? 27 OD2 ? A ASP 59 ? A ASP 96 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 135.5 ? 28 O ? A THR 89 ? A THR 126 ? 1_555 CA ? E CA . ? A CA 1195 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 83.1 ? 29 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 65.0 ? 30 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 114.4 ? 31 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 49.6 ? 32 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 158.7 ? 33 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 135.7 ? 34 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 86.1 ? 35 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 89.1 ? 36 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 144.1 ? 37 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 149.0 ? 38 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 74.1 ? 39 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2076 ? 1_555 80.8 ? 40 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2076 ? 1_555 79.4 ? 41 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2076 ? 1_555 82.7 ? 42 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2076 ? 1_555 96.9 ? 43 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2076 ? 1_555 122.5 ? 44 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 87.2 ? 45 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 74.7 ? 46 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 81.5 ? 47 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 102.3 ? 48 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 79.8 ? 49 O ? G HOH . ? A HOH 2076 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2077 ? 1_555 154.1 ? 50 OE2 ? A GLU 54 ? A GLU 91 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 89.8 ? 51 OE2 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 140.7 ? 52 OE1 ? A GLU 90 ? A GLU 127 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 137.5 ? 53 OD1 ? A ASP 93 ? A ASP 130 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 70.2 ? 54 OD2 ? A ASP 95 ? A ASP 132 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 56.9 ? 55 O ? G HOH . ? A HOH 2076 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 66.5 ? 56 O ? G HOH . ? A HOH 2077 ? 1_555 CA ? D CA . ? A CA 1194 ? 1_555 O ? G HOH . ? A HOH 2103 ? 1_555 136.7 ? 57 NE2 ? A HIS 104 ? A HIS 141 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 OD1 ? A ASP 111 ? A ASP 148 ? 1_555 107.8 ? 58 NE2 ? A HIS 104 ? A HIS 141 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 ND1 ? A HIS 146 ? A HIS 183 ? 1_555 107.9 ? 59 OD1 ? A ASP 111 ? A ASP 148 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 ND1 ? A HIS 146 ? A HIS 183 ? 1_555 108.8 ? 60 NE2 ? A HIS 104 ? A HIS 141 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 O ? G HOH . ? A HOH 2106 ? 1_555 115.2 ? 61 OD1 ? A ASP 111 ? A ASP 148 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 O ? G HOH . ? A HOH 2106 ? 1_555 113.4 ? 62 ND1 ? A HIS 146 ? A HIS 183 ? 1_555 ZN ? C ZN . ? A ZN 1193 ? 1_555 O ? G HOH . ? A HOH 2106 ? 1_555 103.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2013-10-09 3 'Structure model' 1 2 2013-10-30 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_conn_type 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.pdbx_formal_charge' 15 4 'Structure model' '_atom_site.type_symbol' 16 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 17 4 'Structure model' '_atom_site_anisotrop.U[1][2]' 18 4 'Structure model' '_atom_site_anisotrop.U[1][3]' 19 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 20 4 'Structure model' '_atom_site_anisotrop.U[2][3]' 21 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 22 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 23 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 24 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 25 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 26 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 27 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 28 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 29 4 'Structure model' '_atom_site_anisotrop.type_symbol' 30 4 'Structure model' '_chem_comp.mon_nstd_flag' 31 4 'Structure model' '_chem_comp.name' 32 4 'Structure model' '_chem_comp.type' 33 4 'Structure model' '_pdbx_database_status.status_code_sf' 34 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 36 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 40 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 41 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 42 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 43 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 44 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 45 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 46 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 47 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 48 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 49 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 50 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 51 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 52 4 'Structure model' '_pdbx_struct_conn_angle.value' 53 4 'Structure model' '_struct_conn.conn_type_id' 54 4 'Structure model' '_struct_conn.id' 55 4 'Structure model' '_struct_conn.pdbx_dist_value' 56 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 57 4 'Structure model' '_struct_conn.pdbx_value_order' 58 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 59 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 60 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 61 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 62 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 63 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 64 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 65 4 'Structure model' '_struct_conn.ptnr1_symmetry' 66 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 67 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 68 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 69 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 70 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 71 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 72 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 73 4 'Structure model' '_struct_conn.ptnr2_symmetry' 74 4 'Structure model' '_struct_conn_type.id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.7888 _pdbx_refine_tls.origin_y -3.2345 _pdbx_refine_tls.origin_z -13.0190 _pdbx_refine_tls.T[1][1] 0.0505 _pdbx_refine_tls.T[2][2] 0.0465 _pdbx_refine_tls.T[3][3] 0.0539 _pdbx_refine_tls.T[1][2] -0.0033 _pdbx_refine_tls.T[1][3] 0.0010 _pdbx_refine_tls.T[2][3] 0.0113 _pdbx_refine_tls.L[1][1] 0.6269 _pdbx_refine_tls.L[2][2] 0.6131 _pdbx_refine_tls.L[3][3] 0.8462 _pdbx_refine_tls.L[1][2] -0.2437 _pdbx_refine_tls.L[1][3] 0.0228 _pdbx_refine_tls.L[2][3] -0.4125 _pdbx_refine_tls.S[1][1] -0.0113 _pdbx_refine_tls.S[1][2] 0.0160 _pdbx_refine_tls.S[1][3] -0.0071 _pdbx_refine_tls.S[2][1] -0.0126 _pdbx_refine_tls.S[2][2] -0.0649 _pdbx_refine_tls.S[2][3] -0.1002 _pdbx_refine_tls.S[3][1] 0.0253 _pdbx_refine_tls.S[3][2] 0.0420 _pdbx_refine_tls.S[3][3] -0.2067 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4C4M _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;BETA-D-GLUCOPYRANURONIC ACID (BDP): THE OLIGOSACCHARIDE CHAIN BDP-ASG IS CONTINUOUS RUNNING THROUGH SEVERAL UNIT CELLS. ; _pdbx_entry_details.sequence_details ;CONSTRUCT CONTAINS TWO ADDITIONAL N-TERMINAL RESIDUES (MA) AND 6 ADDITIONAL C-TERMINAL RESIDUES (HHHHHH) ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 138 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2022 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 59 ? ? -107.88 -115.93 2 1 ASN A 70 ? ? -105.81 48.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ALA 193 ? CA ? A ALA 156 CA 2 1 Y 1 A ALA 193 ? C ? A ALA 156 C 3 1 Y 1 A ALA 193 ? O ? A ALA 156 O 4 1 Y 1 A ALA 193 ? CB ? A ALA 156 CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 38 ? A MET 1 2 1 Y 1 A ALA 39 ? A ALA 2 3 1 Y 1 A ALA 194 ? A ALA 157 4 1 Y 1 A LYS 195 ? A LYS 158 5 1 Y 1 A HIS 196 ? A HIS 159 6 1 Y 1 A HIS 197 ? A HIS 160 7 1 Y 1 A HIS 198 ? A HIS 161 8 1 Y 1 A HIS 199 ? A HIS 162 9 1 Y 1 A HIS 200 ? A HIS 163 10 1 Y 1 A HIS 201 ? A HIS 164 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 ASG 1 B ASG 1 A ASG 1196 n B 2 BDP 2 B BDP 2 A BDP 1197 n B 2 ASG 3 B ASG 3 A ASG 1198 n B 2 BDP 4 B BDP 4 A BDP 1199 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGalpNAc[4S]b' ASG 'COMMON NAME' GMML 1.0 N-acetyl-4-sulfo-b-D-galactopyranose ASG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc4SO3 BDP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAb BDP 'COMMON NAME' GMML 1.0 'b-D-glucopyranuronic acid' BDP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpA BDP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpAb1-3DGalpNAc[4S]b1-4DGlcpAb1-3DGalpNAc[4S]b1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,4,3/[a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O][a2122A-1b_1-5]/1-2-1-2/a3-b1_b4-c1_c3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GalpNAc4SO3]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GalpNAc4SO3]{[(3+1)][b-D-4-deoxy-GlcpA]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 BDP C1 O1 1 ASG O3 HO3 sing ? 2 2 3 ASG C1 O1 2 BDP O4 HO4 sing ? 3 2 4 BDP C1 O1 3 ASG O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 ASG 1 n 2 BDP 2 n 2 ASG 3 n 2 BDP 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'CALCIUM ION' CA 5 'ACETATE ION' ACT 6 water HOH #