HEADER VIRAL PROTEIN 01-DEC-13 4CHD TITLE CRYSTAL STRUCTURE OF THE '627' DOMAIN OF THE PB2 SUBUNIT OF TITLE 2 THOGOTO VIRUS POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CENTRAL '627' DOMAIN, RESIDUES 543-701; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THOGOTO VIRUS; SOURCE 3 ORGANISM_TAXID: 11569; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CODON PLUS-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-M11 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GUILLIGAY,J.KADLEC,T.CREPIN,T.LUNARDI,D.BOUVIER,G.KOCHS, AUTHOR 2 R.W.H.RUIGROK,S.CUSACK REVDAT 1 05-FEB-14 4CHD 0 JRNL AUTH D.GUILLIGAY,J.KADLEC,T.CREPIN,T.LUNARDI,D.BOUVIER,G.KOCHS, JRNL AUTH 2 R.W.H.RUIGROK,S.CUSACK JRNL TITL COMPARATIVE STRUCTURAL AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 ORTHOMYXOVIRUS POLYMERASE CAP-SNATCHING DOMAINS. JRNL REF PLOS ONE V. 9 84973 2014 JRNL REFN ISSN 1932-6203 JRNL PMID 24454773 JRNL DOI 10.1371/JOURNAL.PONE.0084973 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.36 REMARK 3 NUMBER OF REFLECTIONS : 6288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20891 REMARK 3 R VALUE (WORKING SET) : 0.20738 REMARK 3 FREE R VALUE : 0.23904 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.400 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.462 REMARK 3 REFLECTION IN BIN (WORKING SET) : 455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.308 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.499 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.362 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29 REMARK 3 B22 (A**2) : -1.29 REMARK 3 B33 (A**2) : 2.58 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.384 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1090 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1075 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1468 ; 1.054 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2476 ; 0.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 5.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;39.652 ;23.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 210 ;14.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 165 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1210 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 547 A 581 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0095 21.9808 14.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.2837 REMARK 3 T33: 0.1201 T12: -0.0465 REMARK 3 T13: -0.0041 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.4500 L22: 11.2047 REMARK 3 L33: 7.2048 L12: -3.1279 REMARK 3 L13: -0.9433 L23: -1.3676 REMARK 3 S TENSOR REMARK 3 S11: -0.2106 S12: -0.1068 S13: -0.2697 REMARK 3 S21: 0.2335 S22: -0.0746 S23: -0.5828 REMARK 3 S31: 0.0160 S32: 0.7065 S33: 0.2852 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 582 A 644 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5147 23.7204 19.5117 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1690 REMARK 3 T33: 0.0368 T12: 0.0188 REMARK 3 T13: -0.0084 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 9.2941 L22: 5.1207 REMARK 3 L33: 4.4701 L12: -0.2299 REMARK 3 L13: -1.9753 L23: 0.1201 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: -0.5147 S13: 0.1827 REMARK 3 S21: 0.3124 S22: 0.0016 S23: -0.0720 REMARK 3 S31: -0.3857 S32: 0.0091 S33: 0.1271 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 645 A 681 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5147 10.5996 23.0517 REMARK 3 T TENSOR REMARK 3 T11: 0.2867 T22: 0.3272 REMARK 3 T33: 0.2568 T12: 0.1206 REMARK 3 T13: 0.0397 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 14.8770 L22: 7.0585 REMARK 3 L33: 8.4513 L12: -1.8005 REMARK 3 L13: 1.7350 L23: -2.4540 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.9868 S13: -0.8054 REMARK 3 S21: 0.6067 S22: 0.0570 S23: -0.4276 REMARK 3 S31: 0.6949 S32: 0.6310 S33: 0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4CHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-13. REMARK 100 THE PDBE ID CODE IS EBI-59130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.95 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.01 REMARK 200 R MERGE FOR SHELL (I) : 0.56 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: SOLVED WITH SINGLE SITE MERCURY DERIVATIVE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED TO REMARK 280 2.3 MG/ML IN 250 MM NACL, 50 MM TRIS PH 8.0 AND 2 MM DTT REMARK 280 AND CRYSTALS WERE GROWN IN 0.1 M HEPES PH 7.0, 0.2 M REMARK 280 AMMONIUM SULPHATE AND 22% PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.39000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.74000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.08500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.74000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.69500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.08500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.69500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 540 REMARK 465 ALA A 541 REMARK 465 MET A 542 REMARK 465 ASP A 543 REMARK 465 ILE A 544 REMARK 465 TYR A 545 REMARK 465 GLN A 546 REMARK 465 GLY A 682 REMARK 465 LYS A 683 REMARK 465 GLY A 684 REMARK 465 GLY A 685 REMARK 465 PRO A 686 REMARK 465 GLU A 687 REMARK 465 GLY A 688 REMARK 465 TYR A 689 REMARK 465 VAL A 690 REMARK 465 GLN A 691 REMARK 465 THR A 692 REMARK 465 GLY A 693 REMARK 465 VAL A 694 REMARK 465 PHE A 695 REMARK 465 GLU A 696 REMARK 465 GLU A 697 REMARK 465 GLN A 698 REMARK 465 PRO A 699 REMARK 465 ARG A 700 REMARK 465 CYS A 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 681 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 576 71.34 43.90 REMARK 500 GLN A 652 42.11 -102.02 REMARK 500 THR A 668 5.71 -59.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CGS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF DHORI VIRUS POLYMERASE REMARK 900 RELATED ID: 4CGX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 1) REMARK 900 RELATED ID: 4CHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PA REMARK 900 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM 2) REMARK 900 RELATED ID: 4CHE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUTATIVE CAP-BINDING DOMAIN REMARK 900 OF THE PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE REMARK 900 RELATED ID: 4CHF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUTATIVE CAP-BINDING DOMAIN REMARK 900 OF THE PB2 SUBUNIT OF THOGOTO VIRUS POLYMERASE (FORM REMARK 900 2) REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA GAM AT N-TERMINUS AFTER HIS-TAG CLEAVAGE DBREF 4CHD A 543 701 UNP Q9YNA4 PB2_THOGV 543 701 SEQADV 4CHD GLY A 540 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHD ALA A 541 UNP Q9YNA4 EXPRESSION TAG SEQADV 4CHD MET A 542 UNP Q9YNA4 EXPRESSION TAG SEQRES 1 A 162 GLY ALA MET ASP ILE TYR GLN ASP PRO PHE SER ARG ALA SEQRES 2 A 162 LYS SER LEU LEU LYS SER THR ILE LEU HIS ALA GLU ARG SEQRES 3 A 162 CYS LYS GLU PHE VAL GLY ASN MET LEU GLU GLU TYR GLN SEQRES 4 A 162 ASP PRO ALA GLU THR THR VAL GLN SER LEU VAL PRO ILE SEQRES 5 A 162 ASN THR TRP GLY LYS SER ALA LYS ARG LYS LEU GLN GLU SEQRES 6 A 162 GLU ILE THR SER ASP PRO ASP TRP HIS GLN CYS PRO ARG SEQRES 7 A 162 LYS ARG ALA LYS MET SER TYR LEU ALA ILE ILE ALA GLY SEQRES 8 A 162 SER ILE GLN ASP ARG ASP LYS LYS GLN THR ASN VAL PRO SEQRES 9 A 162 ARG ALA PHE MET LEU ARG GLY SER GLN ILE GLU TYR ASP SEQRES 10 A 162 MET LYS ALA THR ARG GLY LEU VAL VAL ASP THR THR ASN SEQRES 11 A 162 ARG ILE ILE VAL GLY GLY GLU THR VAL LEU ARG GLU GLY SEQRES 12 A 162 LYS GLY GLY PRO GLU GLY TYR VAL GLN THR GLY VAL PHE SEQRES 13 A 162 GLU GLU GLN PRO ARG CYS FORMUL 2 HOH *17(H2 O) HELIX 1 1 ASP A 547 LEU A 561 1 15 HELIX 2 2 HIS A 562 GLU A 576 1 15 HELIX 3 3 ALA A 581 VAL A 589 1 9 HELIX 4 4 TRP A 594 ASP A 609 1 16 HELIX 5 5 ASP A 611 GLN A 614 5 4 HELIX 6 6 CYS A 615 GLY A 630 1 16 SHEET 1 AA 2 ALA A 645 MET A 647 0 SHEET 2 AA 2 GLU A 654 ASP A 656 -1 O TYR A 655 N PHE A 646 SHEET 1 AB 3 VAL A 664 THR A 667 0 SHEET 2 AB 3 ARG A 670 VAL A 673 -1 O ARG A 670 N THR A 667 SHEET 3 AB 3 GLU A 676 ARG A 680 -1 O GLU A 676 N VAL A 673 CRYST1 65.480 65.480 74.780 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013373 0.00000